BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026972
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
Length = 609
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 74 GLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIY 133
GL ++ G++ ++ T G V +R + +E FL + I G EL S Y
Sbjct: 309 GLDEVARISGVMNEILLAQGYTKGTVGERMVALNEEPR--FLYEDSIAGREELLSDINGY 366
Query: 134 FSTAVAKWDADF------YIKVDD-DVHVNLGMVG---STLARHRSKPRVY---IGCMKS 180
+ AK F ++V V V G G ++ A SKP +Y + MK+
Sbjct: 367 ITEVTAKMAPVFRTTPSYQVEVKSFPVEVQDGAPGGQYTSPAVDGSKPGIYWINLRDMKA 426
Query: 181 GPVLGQKGVKYHE 193
P G K + YHE
Sbjct: 427 NPKFGLKTLTYHE 439
>pdb|3SSM|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSN|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSO|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|E Chain E, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|F Chain F, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
Length = 419
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 103 AIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVN 156
+D D+ H D LR+ I+G + F +A+ F I +DD H+N
Sbjct: 252 GLDIMDKSHVDELRIRTIQG-----DQNDAEFLDRIARRYGPFDIVIDDGSHIN 300
>pdb|1N4K|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor Binding Core In Complex With Ip3
Length = 381
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 23 DTEEASPIVTKLGTENLKARRKVFFVMGIITA 54
D EE P++ K+GT LK ++ F ++ + A
Sbjct: 184 DKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPA 215
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 23 DTEEASPIVTKLGTENLKARRKVFFVMGIITA 54
D EE P++ K+GT LK ++ F ++ + A
Sbjct: 407 DKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPA 438
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 23 DTEEASPIVTKLGTENLKARRKVFFVMGIITA 54
D EE P++ K+GT LK ++ F ++ + A
Sbjct: 390 DKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPA 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,861,784
Number of Sequences: 62578
Number of extensions: 285856
Number of successful extensions: 657
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 13
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)