Query 026972
Match_columns 230
No_of_seqs 113 out of 1140
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 8.1E-57 1.8E-61 406.4 23.4 226 2-229 96-323 (408)
2 KOG2287 Galactosyltransferases 100.0 2.9E-47 6.3E-52 344.3 19.7 182 39-229 87-273 (349)
3 PLN03133 beta-1,3-galactosyltr 100.0 3.1E-47 6.7E-52 361.4 20.8 180 38-227 378-558 (636)
4 PF01762 Galactosyl_T: Galacto 100.0 9.4E-45 2E-49 302.9 14.4 162 59-228 1-166 (195)
5 KOG2288 Galactosyltransferases 100.0 4.6E-41 9.9E-46 284.9 16.9 186 42-230 8-194 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 7E-34 1.5E-38 254.2 15.0 170 41-229 76-268 (382)
7 PF02434 Fringe: Fringe-like; 99.6 6E-15 1.3E-19 128.2 8.6 156 45-226 6-164 (252)
8 KOG2246 Galactosyltransferases 99.4 3.8E-12 8.3E-17 115.8 11.1 143 38-227 84-232 (364)
9 PLN03153 hypothetical protein; 98.7 2.8E-07 6E-12 86.6 13.2 149 41-228 118-280 (537)
10 KOG3708 Uncharacterized conser 96.9 0.003 6.5E-08 59.6 6.9 74 132-229 85-161 (681)
11 PF00535 Glycos_transf_2: Glyc 95.3 0.63 1.4E-05 35.5 12.1 135 83-225 27-168 (169)
12 TIGR03472 HpnI hopanoid biosyn 95.2 0.52 1.1E-05 43.0 13.1 167 44-226 40-216 (373)
13 PF01755 Glyco_transf_25: Glyc 95.2 0.47 1E-05 39.0 11.8 93 49-158 4-101 (200)
14 PF13641 Glyco_tranf_2_3: Glyc 95.1 0.59 1.3E-05 38.6 12.1 162 46-226 2-175 (228)
15 cd04192 GT_2_like_e Subfamily 94.5 0.69 1.5E-05 37.8 11.0 136 84-226 29-171 (229)
16 cd06423 CESA_like CESA_like is 92.4 3 6.5E-05 31.6 10.9 95 132-226 68-170 (180)
17 cd04187 DPM1_like_bac Bacteria 91.5 2.5 5.5E-05 33.5 9.8 134 83-228 29-165 (181)
18 cd02520 Glucosylceramide_synth 91.0 7.3 0.00016 31.5 14.8 79 84-167 31-111 (196)
19 cd06532 Glyco_transf_25 Glycos 90.2 3.7 8.1E-05 31.5 9.3 92 49-158 2-98 (128)
20 PRK11204 N-glycosyltransferase 90.0 11 0.00024 34.5 13.9 109 42-167 51-159 (420)
21 PF13506 Glyco_transf_21: Glyc 88.9 1 2.2E-05 36.8 5.4 94 127-225 16-116 (175)
22 cd04179 DPM_DPG-synthase_like 88.7 4.4 9.4E-05 31.9 9.0 132 84-226 29-167 (185)
23 cd04186 GT_2_like_c Subfamily 88.2 9.6 0.00021 29.0 11.9 29 139-167 71-99 (166)
24 TIGR03469 HonB hopene-associat 87.8 13 0.00029 33.9 12.7 114 43-167 38-158 (384)
25 PRK14583 hmsR N-glycosyltransf 87.6 23 0.00049 33.1 14.3 164 44-226 74-246 (444)
26 cd04196 GT_2_like_d Subfamily 86.3 15 0.00034 29.3 13.0 135 83-227 27-169 (214)
27 cd02525 Succinoglycan_BP_ExoA 85.8 18 0.00039 29.7 12.0 77 82-167 30-106 (249)
28 cd06433 GT_2_WfgS_like WfgS an 85.8 3 6.6E-05 32.9 6.5 90 132-226 65-158 (202)
29 COG1215 Glycosyltransferases, 85.8 18 0.00039 32.9 12.5 168 44-226 53-230 (439)
30 PRK10714 undecaprenyl phosphat 85.2 25 0.00055 31.4 12.8 134 83-227 38-174 (325)
31 cd06439 CESA_like_1 CESA_like_ 84.1 23 0.0005 29.4 14.0 112 40-168 24-135 (251)
32 cd06435 CESA_NdvC_like NdvC_li 82.8 25 0.00055 28.9 11.8 37 132-168 72-110 (236)
33 cd04184 GT2_RfbC_Mx_like Myxoc 80.8 26 0.00057 27.8 13.8 36 132-167 73-108 (202)
34 TIGR01556 rhamnosyltran L-rham 78.5 41 0.00088 28.8 11.3 75 87-167 24-98 (281)
35 cd02510 pp-GalNAc-T pp-GalNAc- 78.2 45 0.00097 28.9 14.7 36 133-168 74-109 (299)
36 cd06427 CESA_like_2 CESA_like_ 76.3 44 0.00095 27.8 12.6 37 132-168 74-110 (241)
37 PRK05454 glucosyltransferase M 73.3 67 0.0014 32.2 12.4 131 39-179 118-255 (691)
38 cd06442 DPM1_like DPM1_like re 70.7 55 0.0012 26.4 12.2 92 134-226 70-167 (224)
39 TIGR03111 glyc2_xrt_Gpos1 puta 70.5 93 0.002 29.0 14.0 112 42-168 46-157 (439)
40 cd06434 GT2_HAS Hyaluronan syn 69.8 57 0.0012 26.6 9.7 75 84-168 29-103 (235)
41 cd02526 GT2_RfbF_like RfbF is 67.5 67 0.0014 26.2 11.6 52 111-164 46-97 (237)
42 cd02514 GT13_GLCNAC-TI GT13_GL 66.1 19 0.00042 32.7 6.4 81 133-225 88-174 (334)
43 COG1216 Predicted glycosyltran 64.8 36 0.00078 29.9 7.9 114 111-226 55-183 (305)
44 cd04195 GT2_AmsE_like GT2_AmsE 64.8 69 0.0015 25.4 10.2 35 133-167 71-105 (201)
45 cd04185 GT_2_like_b Subfamily 64.0 72 0.0016 25.4 10.2 36 131-167 69-104 (202)
46 PF13632 Glyco_trans_2_3: Glyc 63.6 14 0.00031 29.5 4.7 76 145-225 1-87 (193)
47 PF03452 Anp1: Anp1; InterPro 61.5 1.1E+02 0.0024 27.1 10.1 125 36-168 16-168 (269)
48 cd04191 Glucan_BSP_ModH Glucan 59.8 1.1E+02 0.0023 26.5 9.7 113 49-168 3-121 (254)
49 cd04188 DPG_synthase DPG_synth 59.4 93 0.002 25.1 10.1 88 83-178 30-119 (211)
50 PF13704 Glyco_tranf_2_4: Glyc 59.1 61 0.0013 22.9 7.5 70 83-159 18-88 (97)
51 cd04190 Chitin_synth_C C-termi 55.3 23 0.0005 29.9 4.8 28 141-168 72-99 (244)
52 PF03071 GNT-I: GNT-I family; 53.5 1.5E+02 0.0033 28.0 10.2 86 129-227 174-271 (434)
53 cd06420 GT2_Chondriotin_Pol_N 52.7 52 0.0011 25.5 6.2 35 133-167 70-104 (182)
54 COG4092 Predicted glycosyltran 52.0 51 0.0011 29.4 6.3 97 58-165 19-117 (346)
55 cd06421 CESA_CelA_like CESA_Ce 51.5 1.3E+02 0.0028 24.3 11.9 90 134-226 76-176 (234)
56 cd06913 beta3GnTL1_like Beta 1 51.3 1.3E+02 0.0028 24.3 10.3 44 134-177 76-119 (219)
57 cd02522 GT_2_like_a GT_2_like_ 47.0 1.1E+02 0.0025 24.4 7.6 42 135-177 65-106 (221)
58 PLN03181 glycosyltransferase; 44.6 1.9E+02 0.0042 27.3 9.2 91 62-155 109-211 (453)
59 cd06438 EpsO_like EpsO protein 43.0 1.6E+02 0.0035 23.1 12.4 88 133-224 71-169 (183)
60 PLN02726 dolichyl-phosphate be 41.8 2E+02 0.0044 23.8 13.3 132 83-227 40-183 (243)
61 PRK14716 bacteriophage N4 adso 39.2 3.6E+02 0.0078 26.0 13.1 107 43-163 64-179 (504)
62 PHA01631 hypothetical protein 37.0 1.1E+02 0.0025 25.1 5.8 90 111-226 39-131 (176)
63 PF09258 Glyco_transf_64: Glyc 34.8 40 0.00087 29.1 3.1 38 141-178 74-111 (247)
64 cd06437 CESA_CaSu_A2 Cellulose 33.9 2.6E+02 0.0056 22.7 12.5 34 133-166 78-111 (232)
65 KOG2571 Chitin synthase/hyalur 32.6 95 0.0021 31.9 5.6 61 129-193 421-487 (862)
66 PLN03182 xyloglucan 6-xylosylt 31.3 4.3E+02 0.0093 25.0 9.2 73 83-155 126-210 (429)
67 cd00761 Glyco_tranf_GTA_type G 30.1 2.1E+02 0.0044 20.4 8.2 35 132-166 67-101 (156)
68 cd06436 GlcNAc-1-P_transferase 29.8 1.5E+02 0.0033 23.6 5.6 80 143-225 90-178 (191)
69 PRK10073 putative glycosyl tra 29.2 4.1E+02 0.0089 23.6 13.6 76 83-167 35-110 (328)
70 PF10111 Glyco_tranf_2_2: Glyc 28.9 3.8E+02 0.0082 23.1 12.6 78 81-165 32-111 (281)
71 PF13712 Glyco_tranf_2_5: Glyc 28.4 65 0.0014 27.1 3.2 32 132-163 44-75 (217)
72 PRK10018 putative glycosyl tra 28.3 4E+02 0.0087 23.2 12.6 35 133-167 76-110 (279)
73 PF12098 DUF3574: Protein of u 26.9 65 0.0014 24.3 2.6 36 36-71 51-87 (104)
74 TIGR02148 Fibro_Slime fibro-sl 26.4 34 0.00074 25.1 1.0 18 142-159 19-36 (90)
75 KOG2547 Ceramide glucosyltrans 25.8 93 0.002 29.0 3.9 82 83-168 114-196 (431)
76 PF00483 NTP_transferase: Nucl 24.5 3.9E+02 0.0084 22.0 7.4 93 129-226 85-191 (248)
77 PF04666 Glyco_transf_54: N-Ac 24.3 3.8E+02 0.0082 24.0 7.5 27 141-167 168-197 (297)
78 PF03490 Varsurf_PPLC: Variant 24.0 38 0.00082 22.1 0.8 27 66-95 9-35 (51)
79 PF05637 Glyco_transf_34: gala 22.8 1.2E+02 0.0026 26.0 3.9 33 126-158 60-92 (239)
80 PTZ00260 dolichyl-phosphate be 21.7 5.8E+02 0.013 22.7 12.5 129 41-178 66-202 (333)
81 cd02511 Beta4Glucosyltransfera 21.6 1.3E+02 0.0028 24.9 3.8 36 132-167 61-96 (229)
82 PRK11498 bcsA cellulose syntha 21.2 9.3E+02 0.02 25.0 12.7 39 127-166 325-363 (852)
83 PF06306 CgtA: Beta-1,4-N-acet 21.0 1.3E+02 0.0029 27.4 3.8 66 101-166 128-199 (347)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=8.1e-57 Score=406.37 Aligned_cols=226 Identities=72% Similarity=1.173 Sum_probs=199.2
Q ss_pred ccchhHHHHHHhHHHHHhhccC--CCCCCccccccccCccccCCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCccccc
Q 026972 2 TLDKTISSLEMQLAAARAAKGD--TEEASPIVTKLGTENLKARRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLE 79 (230)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~ 79 (230)
+|+|+||.|||||+++++. ++ +++ .|.+++.++.+...+++++++|+|+|+|++++||++||+||+++...+.++.
T Consensus 96 ~~~~~~~~le~el~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle 173 (408)
T PLN03193 96 TLDKTISNLEMELAAARAA-QESILNG-SPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLE 173 (408)
T ss_pred HHhhhhhHHhHHHHHHHhh-hhhhccC-CCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccc
Confidence 6899999999999999997 44 444 3665555556777888899999999999999999999999999875545555
Q ss_pred CCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHH
Q 026972 80 NEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGM 159 (230)
Q Consensus 80 ~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~ 159 (230)
...+++++||+|.+.+.+..++++|.+|+++|||||++||.|+|.||++||+++|+|+.++++++|+||+|||+|||+++
T Consensus 174 ~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~ 253 (408)
T PLN03193 174 EEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIAT 253 (408)
T ss_pred cCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHH
Confidence 56789999999998755678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCceEEEEeecCccccCCCCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHHhcC
Q 026972 160 VGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISAHT 229 (230)
Q Consensus 160 L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~n~ 229 (230)
|+.+|..+...+++|+||+..+|+++.+..||+.|++|+|+++++.|||||+|++||||+|+|+.|+.|.
T Consensus 254 L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~ 323 (408)
T PLN03193 254 LGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQ 323 (408)
T ss_pred HHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhCh
Confidence 9999988766668999999877665555677888888888888999999999999999999999999774
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-47 Score=344.31 Aligned_cols=182 Identities=24% Similarity=0.305 Sum_probs=165.6
Q ss_pred cccCCc--eeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEE
Q 026972 39 LKARRK--VFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLR 116 (230)
Q Consensus 39 ~~~~~~--~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~ 116 (230)
..|... ++++++|+|++++++||++||+|||++.. ..+..++++|+||.+++.+ .+++.|++|++.||||||
T Consensus 87 ~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~ 160 (349)
T KOG2287|consen 87 EICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQ 160 (349)
T ss_pred hhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEE
Confidence 334444 79999999999999999999999999863 3567899999999998544 668999999999999999
Q ss_pred EecccccCcchHHHHHHHHHHHh-cCCceEEEEecCceeEeHHHHHHHHhcc-CCCCceEEEEee-cCccccCCCCcccc
Q 026972 117 LNHIEGYHELSSKTQIYFSTAVA-KWDADFYIKVDDDVHVNLGMVGSTLARH-RSKPRVYIGCMK-SGPVLGQKGVKYHE 193 (230)
Q Consensus 117 ~d~~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~-~~~~~~y~G~~~-~~~v~r~~~~K~~v 193 (230)
+||.|+|.|+|+|++++++|+.+ |++++|++|+|||+||++++|+++|... .+.+.+|.|.+. ..+|+|++.+||||
T Consensus 161 ~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyV 240 (349)
T KOG2287|consen 161 VDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYV 240 (349)
T ss_pred EecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCcc
Confidence 99999999999999999999998 8999999999999999999999999998 778889999975 56899999999999
Q ss_pred ccccccCCCCCCCCcCcccceeeeCHHHHHHHHhcC
Q 026972 194 PEYWKFGEEGNKYFRHATGQIYAISKDLATYISAHT 229 (230)
Q Consensus 194 ~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~n~ 229 (230)
|+.. ||.+.|||||+|+|||||+++|+.|+++.
T Consensus 241 p~~~---y~~~~YP~Y~sG~gYvis~~~a~~l~~~s 273 (349)
T KOG2287|consen 241 PESE---YPCSVYPPYASGPGYVISGDAARRLLKAS 273 (349)
T ss_pred CHHH---CCCCCCCCcCCCceeEecHHHHHHHHHHh
Confidence 9764 78899999999999999999999999753
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.1e-47 Score=361.41 Aligned_cols=180 Identities=19% Similarity=0.278 Sum_probs=162.3
Q ss_pred ccccCCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEE
Q 026972 38 NLKARRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRL 117 (230)
Q Consensus 38 ~~~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~ 117 (230)
+-++.++++|+|+|+|+|+|++||++||+|||+... ..+..++++|+||.+. +..+++.|.+|+++||||||+
T Consensus 378 pL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~ 450 (636)
T PLN03133 378 PLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLM 450 (636)
T ss_pred CCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEE
Confidence 344567899999999999999999999999998642 2345689999999986 567889999999999999999
Q ss_pred ecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEee-cCccccCCCCccccccc
Q 026972 118 NHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMK-SGPVLGQKGVKYHEPEY 196 (230)
Q Consensus 118 d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~-~~~v~r~~~~K~~v~~~ 196 (230)
||.|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++. ...|+|++.+|||||.+
T Consensus 451 dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ 530 (636)
T PLN03133 451 PFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE 530 (636)
T ss_pred eeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH
Confidence 99999999999999999999889999999999999999999999999876666789999986 56799999999999976
Q ss_pred cccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 026972 197 WKFGEEGNKYFRHATGQIYAISKDLATYISA 227 (230)
Q Consensus 197 ~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~ 227 (230)
. ||.+.|||||+|+|||||+|+|+.|++
T Consensus 531 e---yp~~~YPpYasG~gYVlS~Dla~~L~~ 558 (636)
T PLN03133 531 E---WPEETYPPWAHGPGYVVSRDIAKEVYK 558 (636)
T ss_pred H---CCCCCCCCCCCcCEEEEcHHHHHHHHH
Confidence 4 688999999999999999999999975
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=9.4e-45 Score=302.88 Aligned_cols=162 Identities=29% Similarity=0.404 Sum_probs=143.8
Q ss_pred HHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHH
Q 026972 59 KRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAV 138 (230)
Q Consensus 59 ~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~ 138 (230)
+||++||+||+++.. ....+++++||||.+++.+..+++.|.+|+++||||||+||.|+|+|+++|++++++|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999863 235799999999999855677888899999999999999999999999999999999999
Q ss_pred h-cCCceEEEEecCceeEeHHHHHHHHhcc--CCCCc-eEEEEeecCccccCCCCccccccccccCCCCCCCCcCcccce
Q 026972 139 A-KWDADFYIKVDDDVHVNLGMVGSTLARH--RSKPR-VYIGCMKSGPVLGQKGVKYHEPEYWKFGEEGNKYFRHATGQI 214 (230)
Q Consensus 139 ~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~--~~~~~-~y~G~~~~~~v~r~~~~K~~v~~~~~~~y~~~~yPpy~~G~~ 214 (230)
+ |++++|++|+|||+|||+++|.++|... ...++ +++++...++|+|++.+|||+|... ||.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~---y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEE---YPDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeee---cccccCCCcCCCCe
Confidence 9 6679999999999999999999999987 33334 4444566788999999999999865 68899999999999
Q ss_pred eeeCHHHHHHHHhc
Q 026972 215 YAISKDLATYISAH 228 (230)
Q Consensus 215 YimS~dl~~~i~~n 228 (230)
|+||+++|+.|+++
T Consensus 153 yvls~~~v~~i~~~ 166 (195)
T PF01762_consen 153 YVLSSDVVKRIYKA 166 (195)
T ss_pred EEecHHHHHHHHHH
Confidence 99999999999875
No 5
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-41 Score=284.94 Aligned_cols=186 Identities=66% Similarity=1.119 Sum_probs=174.7
Q ss_pred CCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEe-cc
Q 026972 42 RRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLN-HI 120 (230)
Q Consensus 42 ~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d-~~ 120 (230)
+++++++|+|.|++++.+||+.+|+||+..+..+.++++..++.++|++|... .+.+...+|.+|.++|+|.+.+| .+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~-~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTAT-LGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCC-ccHHHHHHHHHHHHhcCCeEeechhH
Confidence 78999999999999999999999999999988888888899999999999943 36788899999999999999999 99
Q ss_pred cccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCccccccccccC
Q 026972 121 EGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHEPEYWKFG 200 (230)
Q Consensus 121 D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v~~~~~~~ 200 (230)
|+|.+|+.||+.+|.++..+++++|++|+|||+|||+..|...|......+++|+||+++++++-++++|||.|+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999988789999999999999999999999999 8997
Q ss_pred CCCCCCCcCcccceeeeCHHHHHHHHhcCC
Q 026972 201 EEGNKYFRHATGQIYAISKDLATYISAHTP 230 (230)
Q Consensus 201 y~~~~yPpy~~G~~YimS~dl~~~i~~n~~ 230 (230)
..+. |.||+.|++|+||++++..|+.|.+
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~ 194 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQ 194 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHH
Confidence 6555 9999999999999999999998863
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=7e-34 Score=254.20 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=142.5
Q ss_pred cCCceeEEEEEEcCCCC--HHHHHHHHHhhccCCcCcccccC-CCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEE
Q 026972 41 ARRKVFFVMGIITAFSS--RKRRDSIRETWMPKGDGLLKLEN-EKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRL 117 (230)
Q Consensus 41 ~~~~~~lli~V~S~~~~--~~rR~~IR~TW~~~~~~~~~~~~-~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~ 117 (230)
.+++..++++|+|..++ +.||+++|+||.+-.....+..+ ...+.++|+||.+++.+.+.+++|.+|+++|||||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 45677888999999987 89999999999987543222211 2356789999999987789999999999999999999
Q ss_pred ec------------------ccccCcchHHHHHHHHHHHh-cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEe
Q 026972 118 NH------------------IEGYHELSSKTQIYFSTAVA-KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCM 178 (230)
Q Consensus 118 d~------------------~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~ 178 (230)
|| .|++.|+++||+++++|+.. ||+++|++|+|||+||++++++++|+.. +...+|+|.+
T Consensus 156 pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v 234 (382)
T PTZ00210 156 PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRY 234 (382)
T ss_pred ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEee
Confidence 99 66778899999999999999 7899999999999999999999999765 5556999986
Q ss_pred ec-CccccCCCCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHHhcC
Q 026972 179 KS-GPVLGQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISAHT 229 (230)
Q Consensus 179 ~~-~~v~r~~~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~n~ 229 (230)
.. ..+.| +.+||||+|+||+||+|+|+.|++..
T Consensus 235 ~~~~~p~R------------------d~~PpY~~G~gYvLSrDVA~~Lvs~~ 268 (382)
T PTZ00210 235 NYYNRIWR------------------RNQLTYVNGYCITLSRDTAQAIISYK 268 (382)
T ss_pred CCCCcccc------------------CCCCCccccceeeccHHHHHHHHhhC
Confidence 42 22222 24699999999999999999999864
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.57 E-value=6e-15 Score=128.22 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=79.7
Q ss_pred eeEEEEEEcCCCCHHHH-HHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEeccccc
Q 026972 45 VFFVMGIITAFSSRKRR-DSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGY 123 (230)
Q Consensus 45 ~~lli~V~S~~~~~~rR-~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y 123 (230)
-.++|+|+|++++.+.| .+|++||++... .. .|+..... + ..|..+ ...+++..+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~---------~~--~~ifsd~~--d----~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN---------KQ--TFIFSDAE--D----PSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG---------GG--EEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC---------Cc--eEEecCcc--c----cccccc--cccccccCCCcchh
Confidence 35899999999876555 899999999863 11 35433322 1 223222 33456666666655
Q ss_pred CcchHHHHHHHHHHHh-cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCccccccccccCCC
Q 026972 124 HELSSKTQIYFSTAVA-KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHEPEYWKFGEE 202 (230)
Q Consensus 124 ~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v~~~~~~~y~ 202 (230)
....++.+.++.+-.. .++.+|++++|||+||++++|.++|...++.+++|+|+.....+.... .+ .-+.. .
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~-~~-~~~~~-----~ 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEII-HR-FNPNK-----S 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceee-cc-ccccc-----c
Confidence 4444444444343222 368899999999999999999999999998899999986433222110 00 00000 0
Q ss_pred CCCCCcCc-ccceeeeCHHHHHHHH
Q 026972 203 GNKYFRHA-TGQIYAISKDLATYIS 226 (230)
Q Consensus 203 ~~~yPpy~-~G~~YimS~dl~~~i~ 226 (230)
...-..|+ +|+||+||+.++++|.
T Consensus 140 ~~~~~~f~~GGaG~vlSr~~~~k~~ 164 (252)
T PF02434_consen 140 KDSGFWFATGGAGYVLSRALLKKMS 164 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHH
T ss_pred CcCceEeeCCCeeHHHhHHHHHHHh
Confidence 01122344 6799999999999994
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.8e-12 Score=115.83 Aligned_cols=143 Identities=23% Similarity=0.314 Sum_probs=107.9
Q ss_pred ccccCCceeEEEEEEcCCCCHHHH-HHHHHhhccCCcCcccccCCCceEEEEEe---ecCCCCCchhhhhHHHHHhhCCc
Q 026972 38 NLKARRKVFFVMGIITAFSSRKRR-DSIRETWMPKGDGLLKLENEKGIIMRFVI---GHSATAGGVLDRAIDAEDEQHKD 113 (230)
Q Consensus 38 ~~~~~~~~~lli~V~S~~~~~~rR-~~IR~TW~~~~~~~~~~~~~~~v~~~Fvv---G~~~~~~~~~~~~l~~E~~~~gD 113 (230)
+.--..+.++++.|.|.+.+..-| ..+-+||++.+.. ..|+- .+.. . .+.
T Consensus 84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~---~-----------~f~- 137 (364)
T KOG2246|consen 84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD---S-----------RFP- 137 (364)
T ss_pred hhccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC---C-----------cCc-
Confidence 344667889999999999877766 6999999988641 12333 2221 1 111
Q ss_pred EEEEecccccCcchHHHHHHHHHHHhc--CCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCcc
Q 026972 114 FLRLNHIEGYHELSSKTQIYFSTAVAK--WDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKY 191 (230)
Q Consensus 114 il~~d~~D~y~nlt~Ktl~~l~w~~~~--~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~ 191 (230)
.|..+..|+|+++..|+..+++++.++ .+++|++|+|||||+.++||..+|...++.+.+|+|+.. |-
T Consensus 138 ~v~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~ 207 (364)
T KOG2246|consen 138 TVYYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KS 207 (364)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------cc
Confidence 447889999999999999999999863 699999999999999999999999999999999999742 11
Q ss_pred ccccccccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 026972 192 HEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISA 227 (230)
Q Consensus 192 ~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~ 227 (230)
+... .| --+|+||++|+.+.+.+++
T Consensus 208 ~~~~---------~y--~~g~ag~~ls~aa~~~la~ 232 (364)
T KOG2246|consen 208 YFQN---------GY--SSGGAGYVLSFAALRRLAE 232 (364)
T ss_pred cccc---------cc--ccCCCCcceeHHHHHHHHH
Confidence 1111 11 1467899999888777654
No 9
>PLN03153 hypothetical protein; Provisional
Probab=98.70 E-value=2.8e-07 Score=86.59 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=89.1
Q ss_pred cCCceeEEEEEEcCCCCHH-HHHHHHHhhccCCcCcccccCCCceE-EEEEeecCCCC--CchhhhhHHHHHhhCCcEEE
Q 026972 41 ARRKVFFVMGIITAFSSRK-RRDSIRETWMPKGDGLLKLENEKGII-MRFVIGHSATA--GGVLDRAIDAEDEQHKDFLR 116 (230)
Q Consensus 41 ~~~~~~lli~V~S~~~~~~-rR~~IR~TW~~~~~~~~~~~~~~~v~-~~FvvG~~~~~--~~~~~~~l~~E~~~~gDil~ 116 (230)
...--.++++|.++.+..+ |+..|+.+|.... ++ .+|+.....+. +..+. -|.
T Consensus 118 ~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~-----------~rg~v~ld~~~~~~~~~~~~P-----------~i~- 174 (537)
T PLN03153 118 ELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQ-----------MRGHVWLEEQVSPEEGDDSLP-----------PIM- 174 (537)
T ss_pred CCccccEEEEEEEchhhhhhhhhhhhhhcCccc-----------ceeEEEecccCCCCCCcCCCC-----------CEE-
Confidence 3445568999999888775 5589999998642 22 34554443210 11110 011
Q ss_pred Eecccc---cCc---chHH--HHHHHHHHHh--cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccC
Q 026972 117 LNHIEG---YHE---LSSK--TQIYFSTAVA--KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQ 186 (230)
Q Consensus 117 ~d~~D~---y~n---lt~K--tl~~l~w~~~--~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~ 186 (230)
+.-.-+ |.| .... +..+...... .++++|++++|||+|+.+++|+.+|...++.+..|+|......
T Consensus 175 is~d~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~---- 250 (537)
T PLN03153 175 VSEDTSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH---- 250 (537)
T ss_pred eCCCcccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc----
Confidence 110011 222 1221 1112222222 4899999999999999999999999999999999999653110
Q ss_pred CCCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHHhc
Q 026972 187 KGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISAH 228 (230)
Q Consensus 187 ~~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~n 228 (230)
.....|+| .| ..+|+||+||+.+++.|.++
T Consensus 251 -------~qn~~f~~---~f--A~GGAG~~LSrPLae~L~~~ 280 (537)
T PLN03153 251 -------SANSYFSH---NM--AFGGGGIAISYPLAEALSRI 280 (537)
T ss_pred -------cccccccc---cc--ccCCceEEEcHHHHHHHHHH
Confidence 00000100 11 15899999999999998764
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.003 Score=59.57 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHh--cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCccccccccccCCCCCCCCcC
Q 026972 132 IYFSTAVA--KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHEPEYWKFGEEGNKYFRH 209 (230)
Q Consensus 132 ~~l~w~~~--~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v~~~~~~~y~~~~yPpy 209 (230)
+.++++.+ +-+++|++-+-|++|||...|++.+.+...+.++|+|.-. . .++.=
T Consensus 85 ~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~-------------~--------~gs~r--- 140 (681)
T KOG3708|consen 85 MVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA-------------E--------DGSGR--- 140 (681)
T ss_pred HHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh-------------h--------CccCc---
Confidence 44556555 3699999999999999999999999999888899998310 0 00111
Q ss_pred c-ccceeeeCHHHHHHHHhcC
Q 026972 210 A-TGQIYAISKDLATYISAHT 229 (230)
Q Consensus 210 ~-~G~~YimS~dl~~~i~~n~ 229 (230)
| .|.||++|+.++.+|-+|.
T Consensus 141 C~l~~G~LLS~s~l~~lrnnl 161 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNL 161 (681)
T ss_pred cccccceeecHHHHHHHHhhH
Confidence 6 4699999999999999885
No 11
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.27 E-value=0.63 Score=35.46 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=66.4
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGS 162 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 162 (230)
.+.++++-..+. +...+.+.+-.+....+..+...+.. ++. .++..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-ccc----ccccccccccceeEEEEeCCCceEcHHHHHH
Confidence 345555554442 33344444444334566666665443 222 2333333434556999999999999986666
Q ss_pred HHhccCC-CCceEEEEee---cC-ccccCCCC--ccccccccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 026972 163 TLARHRS-KPRVYIGCMK---SG-PVLGQKGV--KYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYI 225 (230)
Q Consensus 163 ~L~~~~~-~~~~y~G~~~---~~-~v~r~~~~--K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i 225 (230)
.+..... ...+.+|... .. ........ .+..............--+++.|++.++++++.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6655433 3445556532 11 11111111 111110000000112334468899999999998876
No 12
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.22 E-value=0.52 Score=42.99 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=84.0
Q ss_pred ceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCc--EEEEeccc
Q 026972 44 KVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKD--FLRLNHIE 121 (230)
Q Consensus 44 ~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gD--il~~d~~D 121 (230)
.+.+-|+|++.-....-.+.|+ +...+. ...+.++++...+. | ...+.+++=.+.|.+ +..+.-.+
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~--D-~t~~iv~~~~~~~p~~~i~~v~~~~ 107 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPD--D-PALAVVRRLRADFPDADIDLVIDAR 107 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCC--C-cHHHHHHHHHHhCCCCceEEEECCC
Confidence 4556777776654443444553 344432 12367777665543 2 222333333456666 43332111
Q ss_pred ccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCC--------cccc
Q 026972 122 GYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGV--------KYHE 193 (230)
Q Consensus 122 ~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~--------K~~v 193 (230)
-.....|.-...+ +.+..+.+|++.+|+|+.+.++-|...+......+--.+++.....+.....+ -++.
T Consensus 108 -~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (373)
T TIGR03472 108 -RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFL 185 (373)
T ss_pred -CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhh
Confidence 1233356655444 34456899999999999999888877776653222112222211111000000 1112
Q ss_pred ccccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 026972 194 PEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 194 ~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
|... .... ..-+.+|.|+++++.+++.+.+.
T Consensus 186 ~~~~-~~~~-~~~~~~~~G~~~a~RR~~l~~iG 216 (373)
T TIGR03472 186 PSVM-VARA-LGRARFCFGATMALRRATLEAIG 216 (373)
T ss_pred HHHH-HHHh-ccCCccccChhhheeHHHHHHcC
Confidence 2100 0000 01134589999999999998874
No 13
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.21 E-value=0.47 Score=38.98 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=51.9
Q ss_pred EEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEE-----eccccc
Q 026972 49 MGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRL-----NHIEGY 123 (230)
Q Consensus 49 i~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~-----d~~D~y 123 (230)
|.|.|=+...+||+.+.+..... ++.+-|+-|........ .+....+..-... .+.-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~l~~-----~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRDLSE-----DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccccch-----HHHHHHhhhhhhhccccccCCcce
Confidence 45777888899999998887654 23445666665421111 0111112111110 111111
Q ss_pred CcchHHHHHHHHHHHhcCCceEEEEecCceeEeHH
Q 026972 124 HELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLG 158 (230)
Q Consensus 124 ~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~ 158 (230)
-.-.+-.+..|+-+.+ .+.++++-.-||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1224555666666665 467899999999999865
No 14
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.07 E-value=0.59 Score=38.56 Aligned_cols=162 Identities=11% Similarity=-0.001 Sum_probs=70.7
Q ss_pred eEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcE--EEEeccccc
Q 026972 46 FFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDF--LRLNHIEGY 123 (230)
Q Consensus 46 ~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDi--l~~d~~D~y 123 (230)
.+.|+|++.-....-+..|+.--... ...++++++...+. ....+.+.+-...++.. ..+...
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~--- 66 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP--- 66 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---
Confidence 46677776554344444444443211 12356666664443 33445565555666653 333322
Q ss_pred Ccc--hHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc-CCCCceEEEEeecCc---cc----cCCCCcccc
Q 026972 124 HEL--SSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH-RSKPRVYIGCMKSGP---VL----GQKGVKYHE 193 (230)
Q Consensus 124 ~nl--t~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~-~~~~~~y~G~~~~~~---v~----r~~~~K~~v 193 (230)
.|. ..|.- +++++.+..+.+|++.+|||+.+.++-|...+... .+.-....|.....+ .. +.....|+.
T Consensus 67 ~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (228)
T PF13641_consen 67 RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHL 145 (228)
T ss_dssp --HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETT
T ss_pred CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhh
Confidence 222 23433 45666665679999999999999988887777665 233334434332111 00 000011111
Q ss_pred ccccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 026972 194 PEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 194 ~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
... ....... . .++.|++.++.+++++.+.
T Consensus 146 ~~~-~~~~~~~-~-~~~~G~~~~~rr~~~~~~g 175 (228)
T PF13641_consen 146 RFR-SGRRALG-V-AFLSGSGMLFRRSALEEVG 175 (228)
T ss_dssp TS--TT-B------S-B--TEEEEEHHHHHHH-
T ss_pred hhh-hhhcccc-e-eeccCcEEEEEHHHHHHhC
Confidence 100 0000111 1 3468999999999999873
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.47 E-value=0.69 Score=37.82 Aligned_cols=136 Identities=14% Similarity=-0.009 Sum_probs=69.4
Q ss_pred eEEEEEeecCCCCCchhhhhHHHHHhhC--CcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 84 IIMRFVIGHSATAGGVLDRAIDAEDEQH--KDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 84 v~~~FvvG~~~~~~~~~~~~l~~E~~~~--gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
+.++.|-+.+. +...+.+. +...+ ..+..+...... |. -|. .+++++.+....+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~---d~t~~~~~-~~~~~~~~~v~~~~~~~~~-~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST---DGTVQILE-FAAAKPNFQLKILNNSRVS-IS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC---cChHHHHH-HHHhCCCcceEEeeccCcc-cc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 56666655443 22233343 23233 345555554322 22 222 345666666789999999999999988777
Q ss_pred HHHhccCC-CCceEEEEeecCcc----ccCCCCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 026972 162 STLARHRS-KPRVYIGCMKSGPV----LGQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 162 ~~L~~~~~-~~~~y~G~~~~~~v----~r~~~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
..+..... ....+.|.....+. .+...-.+...............+..+.|+++++++++.+.+.
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~g 171 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVG 171 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhc
Confidence 77764432 23344454321100 0000000000000000001224556678999999999998873
No 16
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=92.41 E-value=3 Score=31.56 Aligned_cols=95 Identities=9% Similarity=0.091 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCC--ceEEEEeec---C-ccccC-CCCccccccccccC-CCC
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKP--RVYIGCMKS---G-PVLGQ-KGVKYHEPEYWKFG-EEG 203 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~--~~y~G~~~~---~-~v~r~-~~~K~~v~~~~~~~-y~~ 203 (230)
.+++++.+..+.+|++.+|+|..+....|...+......+ .+..|.... . ..... ...++......... ...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 4555666656899999999999998877777644443222 233333221 1 11110 00111111000000 001
Q ss_pred CCCCcCcccceeeeCHHHHHHHH
Q 026972 204 NKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 204 ~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
....+++.|.++++++++++.+.
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23446689999999999998875
No 17
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.47 E-value=2.5 Score=33.48 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=72.4
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGS 162 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 162 (230)
.+.++.|-+.+. + ...+.+.....++..+..+.....+ . | -.+++.+..+...+|++.+|+|....+..|..
T Consensus 29 ~~eiivvdd~s~--d-~t~~~~~~~~~~~~~i~~i~~~~n~-G---~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST--D-RTLEILRELAARDPRVKVIRLSRNF-G---Q-QAALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC--c-cHHHHHHHHHhhCCCEEEEEecCCC-C---c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 456666655554 2 2333444445556666666554332 1 2 23444444445679999999999998877777
Q ss_pred HHhccCCCCceEEEEeecC--ccccCCCCccccc-cccccCCCCCCCCcCcccceeeeCHHHHHHHHhc
Q 026972 163 TLARHRSKPRVYIGCMKSG--PVLGQKGVKYHEP-EYWKFGEEGNKYFRHATGQIYAISKDLATYISAH 228 (230)
Q Consensus 163 ~L~~~~~~~~~y~G~~~~~--~v~r~~~~K~~v~-~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~n 228 (230)
.+........+.+|..... ...+.-.++.+.. .... ....-+...|+++++++.+++.+..-
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL----SGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH----cCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 7765444445666654211 1000000111110 0000 12333457788999999999988643
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.00 E-value=7.3 Score=31.51 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=45.8
Q ss_pred eEEEEEeecCCCCCchhhhhHHHHHhhCC--cEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 84 IIMRFVIGHSATAGGVLDRAIDAEDEQHK--DFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 84 v~~~FvvG~~~~~~~~~~~~l~~E~~~~g--Dil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
+.+++|...+. ....+.+++-.+.+. ++......... ....|.- .+..+.+....+|++..|+|+.+.++.|.
T Consensus 31 ~eiivVdd~s~---d~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED---DPAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc---chHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67777776664 223344555555665 33222221111 1223432 34444555678999999999999887777
Q ss_pred HHHhcc
Q 026972 162 STLARH 167 (230)
Q Consensus 162 ~~L~~~ 167 (230)
..+...
T Consensus 106 ~l~~~~ 111 (196)
T cd02520 106 RMVAPL 111 (196)
T ss_pred HHHHHh
Confidence 776653
No 19
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=90.17 E-value=3.7 Score=31.53 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=50.6
Q ss_pred EEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHh-----hCCcEEEEeccccc
Q 026972 49 MGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDE-----QHKDFLRLNHIEGY 123 (230)
Q Consensus 49 i~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~-----~~gDil~~d~~D~y 123 (230)
+.|.|=+...+||..+++..... ++.+-|+-|-.... .....+..... .++- +..-+.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~----~l~~gE 64 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGR----PLTPGE 64 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCC----CCChhh
Confidence 45677788899999999865543 33455666666521 11111211111 1111 111122
Q ss_pred CcchHHHHHHHHHHHhcCCceEEEEecCceeEeHH
Q 026972 124 HELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLG 158 (230)
Q Consensus 124 ~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~ 158 (230)
-.-.+-.+..|+-+.+ .+.++.+-..||+.+..+
T Consensus 65 iGC~lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 65 IGCFLSHYKLWQKIVE-SNLEYALILEDDAILDPD 98 (128)
T ss_pred HHHHHHHHHHHHHHHH-cCCCeEEEEccCcEECCC
Confidence 2223445555555554 466889999999998887
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=89.98 E-value=11 Score=34.47 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=62.8
Q ss_pred CCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEeccc
Q 026972 42 RRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIE 121 (230)
Q Consensus 42 ~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D 121 (230)
.+.+.+-|+|++.-+. ..|+++-.+... . ......++ |+.... ++...+.+++..+++..+..++..+
T Consensus 51 ~~~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eii-VvdD~s--~d~t~~~l~~~~~~~~~v~~i~~~~ 118 (420)
T PRK11204 51 KEYPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVI-AINDGS--SDNTGEILDRLAAQIPRLRVIHLAE 118 (420)
T ss_pred CCCCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEE-EEECCC--CccHHHHHHHHHHhCCcEEEEEcCC
Confidence 3445677777776543 334444433211 0 01134444 443333 2334455555566676676665433
Q ss_pred ccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 122 GYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 122 ~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
|.. | -.+++.+.+..+.+|++..|+|+.+.++.|.+.+...
T Consensus 119 ---n~G-k-a~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 119 ---NQG-K-ANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred ---CCC-H-HHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 222 3 3455666666789999999999999999888777665
No 21
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=88.86 E-value=1 Score=36.80 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCC-CCceEEEEeecCccccCCCCc---ccc---cccccc
Q 026972 127 SSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRS-KPRVYIGCMKSGPVLGQKGVK---YHE---PEYWKF 199 (230)
Q Consensus 127 t~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~-~~~~y~G~~~~~~v~r~~~~K---~~v---~~~~~~ 199 (230)
..|+-...+......+.++++..|+|+.++++-|...+..... .-.+..|... ..+.+.-.+. -++ +..+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~-~~~~~~~~~~l~~~~~~~~~~~~-- 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPR-GVPARGFWSRLEAAFFNFLPGVL-- 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEeccc-ccCCcCHHHHHHHHHHhHHHHHH--
Confidence 4466655555443368999999999999999988887766542 2233322111 1111110000 011 1110
Q ss_pred CCCCCCCCcCcccceeeeCHHHHHHH
Q 026972 200 GEEGNKYFRHATGQIYAISKDLATYI 225 (230)
Q Consensus 200 ~y~~~~yPpy~~G~~YimS~dl~~~i 225 (230)
..-.-.++|.|++++|.+++++.+
T Consensus 93 --~a~~~~~~~~G~~m~~rr~~L~~~ 116 (175)
T PF13506_consen 93 --QALGGAPFAWGGSMAFRREALEEI 116 (175)
T ss_pred --HHhcCCCceecceeeeEHHHHHHc
Confidence 001246789999999999999876
No 22
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=88.72 E-value=4.4 Score=31.90 Aligned_cols=132 Identities=9% Similarity=0.010 Sum_probs=70.5
Q ss_pred eEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHH
Q 026972 84 IIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGST 163 (230)
Q Consensus 84 v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~ 163 (230)
+.++.+-..+. ....+.+..-..++..+..+....... .-.++..+.++...+|++..|+|..+.++.|.+.
T Consensus 29 ~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 44444444443 234455555566666665555544432 1234444445445599999999999998888888
Q ss_pred Hhc-cCCCCceEEEEee--cC----ccccCCCCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 026972 164 LAR-HRSKPRVYIGCMK--SG----PVLGQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 164 L~~-~~~~~~~y~G~~~--~~----~v~r~~~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
+.. ......+..|... .+ +..+. ...+........ -...-.....|+++++++++++.+.
T Consensus 101 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 101 LEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRL--LLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHH--HcCCCCcCCCCceeeeHHHHHHHHH
Confidence 876 3334456666532 11 11110 000111100000 0012223367888899999999883
No 23
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.24 E-value=9.6 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=23.9
Q ss_pred hcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 139 AKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 139 ~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
++.+.+|++..|||.++.++.+...+...
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~ 99 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAA 99 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHH
Confidence 33489999999999999988888877643
No 24
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=87.80 E-value=13 Score=33.87 Aligned_cols=114 Identities=12% Similarity=-0.014 Sum_probs=58.5
Q ss_pred CceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCC---cEEEEec
Q 026972 43 RKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHK---DFLRLNH 119 (230)
Q Consensus 43 ~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~g---Dil~~d~ 119 (230)
..+.+-|+|++.-+...-...|+.-- ++.. ...+.+++|-..+. | .+.+.+.+-.+.+. .+.++..
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~-~q~y-------p~~~eIIVVDd~St--D-~T~~i~~~~~~~~~~~~~i~vi~~ 106 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLL-EQDY-------PGKLHVILVDDHST--D-GTADIARAAARAYGRGDRLTVVSG 106 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHH-hCCC-------CCceEEEEEeCCCC--C-cHHHHHHHHHHhcCCCCcEEEecC
Confidence 44567777776654332333333221 1110 11356676665554 2 22223332233343 4554443
Q ss_pred ccccCcchHHHH---HHHHHHHh-cCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 120 IEGYHELSSKTQ---IYFSTAVA-KWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 120 ~D~y~nlt~Ktl---~~l~w~~~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
.+.-.+-.-|.. .+++.+.+ ..+.+|++.+|+|+.+.++.|.+.+...
T Consensus 107 ~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~ 158 (384)
T TIGR03469 107 QPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARA 158 (384)
T ss_pred CCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 222122234533 34555443 2348999999999999998887777654
No 25
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=87.64 E-value=23 Score=33.06 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=85.5
Q ss_pred ceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEeccccc
Q 026972 44 KVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGY 123 (230)
Q Consensus 44 ~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y 123 (230)
.+.+-|+|++.-+...-++.|+. -.++. ...+.+++|-..+. +...+.+.+..+++..+.+.....
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~s-ll~q~--------yp~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~-- 139 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHA-ALAQT--------YTNIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH-- 139 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHH-HHcCC--------CCCeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC--
Confidence 45677777777554333333332 12221 12356555544332 334455555566676665554332
Q ss_pred CcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCC---ccccccccc-c
Q 026972 124 HELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGV---KYHEPEYWK-F 199 (230)
Q Consensus 124 ~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~---K~~v~~~~~-~ 199 (230)
|. -|. .+++.+....+.+|++..|.|+.+..+.+.+.+......++ .|.+.+.+..+++.+ +....+... +
T Consensus 140 -n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~ 214 (444)
T PRK14583 140 -NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSII 214 (444)
T ss_pred -CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHH
Confidence 21 143 45666666678999999999999999988877765432233 244433332222211 111111000 0
Q ss_pred C----CCCCCCCc-CcccceeeeCHHHHHHHH
Q 026972 200 G----EEGNKYFR-HATGQIYAISKDLATYIS 226 (230)
Q Consensus 200 ~----y~~~~yPp-y~~G~~YimS~dl~~~i~ 226 (230)
+ .....-+. .++|.+.++.+++++++.
T Consensus 215 ~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vG 246 (444)
T PRK14583 215 GLIKRTQRVYGQVFTVSGVVAAFRRRALADVG 246 (444)
T ss_pred HHHHHHHHHhCCceEecCceeEEEHHHHHHcC
Confidence 0 00001112 357888999999988763
No 26
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.28 E-value=15 Score=29.30 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=67.3
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCC-cEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHK-DFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~g-Dil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
.+.+++|-..+. | .+.+.+++-..+++ .+.......+. +. ...+..+....+.+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~--d-~t~~~~~~~~~~~~~~~~~~~~~~~~-G~----~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST--D-GTVEIIKEYIDKDPFIIILIRNGKNL-GV----ARNFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC--C-CcHHHHHHHHhcCCceEEEEeCCCCc-cH----HHHHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 466666665554 2 23344444444454 33333333322 22 2233333455689999999999999988888
Q ss_pred HHHhc-cC-CCCceEEEEee----cCccccCCCCcccccc-ccccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 026972 162 STLAR-HR-SKPRVYIGCMK----SGPVLGQKGVKYHEPE-YWKFGEEGNKYFRHATGQIYAISKDLATYISA 227 (230)
Q Consensus 162 ~~L~~-~~-~~~~~y~G~~~----~~~v~r~~~~K~~v~~-~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~ 227 (230)
..+.. .. +...++.|... .+.......-...... ... +.......++.|++.++.+++++.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~ 169 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTS--FNNLLFQNVVTGCTMAFNRELLELALP 169 (214)
T ss_pred HHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccC--HHHHHHhCccCCceeeEEHHHHHhhcc
Confidence 87765 22 22233333221 1111110000000000 000 000122345679999999999988754
No 27
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.85 E-value=18 Score=29.67 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=46.0
Q ss_pred CceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 82 KGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 82 ~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
..+.++.+-+.+. +...+.+....+++..+........ +. -.+++.+.+..+.+|++..|+|..+.+.-|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~----~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQ----SAGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cc----hHHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3556666655554 2333444444444444444432211 11 1356666665689999999999999888777
Q ss_pred HHHhcc
Q 026972 162 STLARH 167 (230)
Q Consensus 162 ~~L~~~ 167 (230)
..+...
T Consensus 101 ~~~~~~ 106 (249)
T cd02525 101 ELVEAL 106 (249)
T ss_pred HHHHHH
Confidence 777554
No 28
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.83 E-value=3 Score=32.92 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccC--CCCceEEEEee--cCccccCCCCccccccccccCCCCCCCC
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHR--SKPRVYIGCMK--SGPVLGQKGVKYHEPEYWKFGEEGNKYF 207 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~--~~~~~y~G~~~--~~~v~r~~~~K~~v~~~~~~~y~~~~yP 207 (230)
.+++.+.+..+.+|++..|+|..+..+.+...+.... +...+..|... ...... ...+...... ...-...
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFL----DKFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchh----hhHHhhc
Confidence 4455566666889999999999999998888773332 23345555432 111100 0011000100 0111334
Q ss_pred cCcccceeeeCHHHHHHHH
Q 026972 208 RHATGQIYAISKDLATYIS 226 (230)
Q Consensus 208 py~~G~~YimS~dl~~~i~ 226 (230)
.++.|++.++++++.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ 158 (202)
T cd06433 140 MPICHQATFFRRSLFEKYG 158 (202)
T ss_pred CcccCcceEEEHHHHHHhC
Confidence 4577888899999998874
No 29
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.80 E-value=18 Score=32.90 Aligned_cols=168 Identities=8% Similarity=0.037 Sum_probs=91.0
Q ss_pred ceeEEEEEEcCCCCHH-HHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccc
Q 026972 44 KVFFVMGIITAFSSRK-RRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEG 122 (230)
Q Consensus 44 ~~~lli~V~S~~~~~~-rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~ 122 (230)
.+.+-|+|++--+..+ ..+.++..-... -....++.|...+. +...+.+.+-..+++..+.+...
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~-- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP-- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--
Confidence 4677777887765552 333333332221 12245666665443 44455666666666533333321
Q ss_pred cCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCce-EEEEee--cC-----ccccCCCCccccc
Q 026972 123 YHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRV-YIGCMK--SG-----PVLGQKGVKYHEP 194 (230)
Q Consensus 123 y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~-y~G~~~--~~-----~v~r~~~~K~~v~ 194 (230)
..-...-..++.++....+.++++..|-|+.+..+.|.+.+......+.. ..|... .+ ...|-..-.+...
T Consensus 119 -~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (439)
T COG1215 119 -EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSA 197 (439)
T ss_pred -cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhh
Confidence 11122335677777776679999999999999999999988777533332 222211 00 0000000000000
Q ss_pred cccccCCC-CCCCCcCcccceeeeCHHHHHHHH
Q 026972 195 EYWKFGEE-GNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 195 ~~~~~~y~-~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
........ ....+.+|.|++.++.+++++.+.
T Consensus 198 ~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g 230 (439)
T COG1215 198 FYFRLRAASKGGLISFLSGSSSAFRRSALEEVG 230 (439)
T ss_pred HHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC
Confidence 00000001 123577899999999999998875
No 30
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=85.25 E-value=25 Score=31.45 Aligned_cols=134 Identities=8% Similarity=0.018 Sum_probs=69.0
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCc-EEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKD-FLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gD-il~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
.+.+++|-..+.+ ...+.+++-.+.+++ ++......++ ... .+++-..++.+.+|++.+|.|...++..+.
T Consensus 38 ~~EIIvVDDgS~D---~T~~il~~~~~~~~~~v~~i~~~~n~-G~~----~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD---NSAEMLVEAAQAPDSHIVAILLNRNY-GQH----SAIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC---cHHHHHHHHHhhcCCcEEEEEeCCCC-CHH----HHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 4677787766652 223334333344454 4444333333 211 123333344578999999999999999888
Q ss_pred HHHhccCCCCceEEEEeec--CccccCCCCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 026972 162 STLARHRSKPRVYIGCMKS--GPVLGQKGVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISA 227 (230)
Q Consensus 162 ~~L~~~~~~~~~y~G~~~~--~~v~r~~~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~ 227 (230)
++++......++..|.... .+..|.-.++.+----..+ .+..++.+++| .-++++++++.|..
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 8887654323444443321 2222222222111100000 12234444333 45899999998853
No 31
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=84.11 E-value=23 Score=29.42 Aligned_cols=112 Identities=8% Similarity=-0.038 Sum_probs=58.9
Q ss_pred ccCCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEec
Q 026972 40 KARRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNH 119 (230)
Q Consensus 40 ~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~ 119 (230)
.+...+.+-|+|++.-....-...|+.-..+.. ....+.++++...+. +...+.+.+..+. .+.+...
T Consensus 24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~---d~t~~~~~~~~~~--~v~~i~~ 91 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGST---DGTAEIAREYADK--GVKLLRF 91 (251)
T ss_pred CCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCC---ccHHHHHHHHhhC--cEEEEEc
Confidence 344555677777776544334445555444321 112355555554433 2233333322222 3444433
Q ss_pred ccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 120 IEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 120 ~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
.+.. -|. .+++.+.+....+|++.+|+|+.+..+-|.+.+....
T Consensus 92 ~~~~----g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 92 PERR----GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred CCCC----ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 2221 132 3445445555679999999999999777777766653
No 32
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.78 E-value=25 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHhc--CCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 132 IYFSTAVAK--WDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 132 ~~l~w~~~~--~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
.++.++.+. .+.+|++..|+|+.+.++.|...+....
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 356666663 3589999999999999998888876653
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.78 E-value=26 Score=27.79 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
.+++++.++...+|++..|+|..+.++.|...+...
T Consensus 73 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 73 AATNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 345555555678999999999999998888877665
No 34
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=78.52 E-value=41 Score=28.80 Aligned_cols=75 Identities=4% Similarity=0.047 Sum_probs=42.1
Q ss_pred EEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhc
Q 026972 87 RFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLAR 166 (230)
Q Consensus 87 ~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~ 166 (230)
++||-..++.+ ..+.+-.+.+..|..+...++. ....=.=.+++++.+ .+.+|++..|||+.+..+.|...+..
T Consensus 24 iiVVDN~S~~~----~~~~~~~~~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~ 97 (281)
T TIGR01556 24 IIAVDNSPHSD----QPLKNARLRGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKL 97 (281)
T ss_pred EEEEECcCCCc----HhHHHHhccCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 56665554211 2222222344566665544322 111111235566654 37899999999999998777766655
Q ss_pred c
Q 026972 167 H 167 (230)
Q Consensus 167 ~ 167 (230)
.
T Consensus 98 ~ 98 (281)
T TIGR01556 98 L 98 (281)
T ss_pred H
Confidence 4
No 35
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=78.15 E-value=45 Score=28.91 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 133 YFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 133 ~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
+.+.+.+....+|++..|+|+.+.+.-|...+....
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~ 109 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIA 109 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHH
Confidence 444545555789999999999998877766665543
No 36
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=76.33 E-value=44 Score=27.82 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
.+++.+.+..+.+|++.+|+|+.+.++.|.+.+....
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 4566666666789999999999999999888887654
No 37
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=73.28 E-value=67 Score=32.22 Aligned_cols=131 Identities=8% Similarity=0.005 Sum_probs=74.6
Q ss_pred cccCCceeEEEEEEcCCCCHH-HHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhh--hhHHHHHhhCC---
Q 026972 39 LKARRKVFFVMGIITAFSSRK-RRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLD--RAIDAEDEQHK--- 112 (230)
Q Consensus 39 ~~~~~~~~lli~V~S~~~~~~-rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~--~~l~~E~~~~g--- 112 (230)
..+...+.+.|+|++.-+..+ -+..|+.++.+... ......+.+ |++..+.+++.... ..+.+-.++++
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 445667788888998876654 33567777654221 001123444 88877653221111 11222233443
Q ss_pred cEEEEecccccCcchHHHHHHHHHHHh-cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEee
Q 026972 113 DFLRLNHIEGYHELSSKTQIYFSTAVA-KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMK 179 (230)
Q Consensus 113 Dil~~d~~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~ 179 (230)
.+.... .-.|.-.|.-..-.|... ..+++|++-.|-|+.+..+.|.+.+.....+++ +|-+.
T Consensus 193 ~i~yr~---R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQ 255 (691)
T PRK05454 193 RIFYRR---RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQ 255 (691)
T ss_pred cEEEEE---CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEe
Confidence 344322 223445566655555544 257899999999999999998888866532333 45554
No 38
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=70.68 E-value=55 Score=26.41 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=49.4
Q ss_pred HHHHHhcCCceEEEEecCceeEeHHHHHHHHhc-cCCCCceEEEEee-cCccccCCCCcc--cccc--ccccCCCCCCCC
Q 026972 134 FSTAVAKWDADFYIKVDDDVHVNLGMVGSTLAR-HRSKPRVYIGCMK-SGPVLGQKGVKY--HEPE--YWKFGEEGNKYF 207 (230)
Q Consensus 134 l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~-~~~~~~~y~G~~~-~~~v~r~~~~K~--~v~~--~~~~~y~~~~yP 207 (230)
++...+....+|++.+|+|..+.++.|...+.. ..+...+..|... ..... .....+ +.+. .+.-......-.
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKV 148 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 333334345699999999999998888887776 3344456666432 11110 000000 0100 000000001112
Q ss_pred cCcccceeeeCHHHHHHHH
Q 026972 208 RHATGQIYAISKDLATYIS 226 (230)
Q Consensus 208 py~~G~~YimS~dl~~~i~ 226 (230)
+.+.|++.++++++++.+.
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 3578888999999999884
No 39
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=70.48 E-value=93 Score=28.98 Aligned_cols=112 Identities=10% Similarity=0.004 Sum_probs=59.4
Q ss_pred CCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEeccc
Q 026972 42 RRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIE 121 (230)
Q Consensus 42 ~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D 121 (230)
...+.+-|+|++--+...-++.|+.--... .+...+.++.|-+.+. +...+.+.+-.+.+..+...-...
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~-------yp~~~~eIiVVDd~St---D~T~~il~~~~~~~~~v~v~~~~~ 115 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQT-------YPIELIDIILANNQST---DDSFQVFCRAQNEFPGLSLRYMNS 115 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcC-------CCCCCeEEEEEECCCC---hhHHHHHHHHHHhCCCeEEEEeCC
Confidence 334556666666544333344444322211 0122344444433332 222333343345555543322222
Q ss_pred ccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 122 GYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 122 ~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
. .-| -.+++++.+..+.+|++..|+|..+.++.|.+.+....
T Consensus 116 ~----~Gk-a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 116 D----QGK-AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred C----CCH-HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 1 123 34566666767889999999999999998888776653
No 40
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=69.78 E-value=57 Score=26.56 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=44.8
Q ss_pred eEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHH
Q 026972 84 IIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGST 163 (230)
Q Consensus 84 v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~ 163 (230)
..+++|...+. +.....+ .+...+..+.+..- +. .+ |. .++..+.+..+.+|++.+|+|+.+.++.|.+.
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~~-~~-~g---~~-~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVITV-PH-PG---KR-RALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEec-CC-CC---hH-HHHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 44555554443 2223333 34556666665542 11 12 33 23344444458999999999999999998888
Q ss_pred HhccC
Q 026972 164 LARHR 168 (230)
Q Consensus 164 L~~~~ 168 (230)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 87764
No 41
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=67.50 E-value=67 Score=26.19 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHH
Q 026972 111 HKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTL 164 (230)
Q Consensus 111 ~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L 164 (230)
...+..+...... ....=.-.+++++.. .+++|++..|+|+.+.++.|...+
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHH
Confidence 3455555443322 122222335555443 378999999999999988888874
No 42
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=66.12 E-value=19 Score=32.73 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHhcCCceEEEEecCceeEeHH---HHHHHHhccCCCCceEEEEeecCccccCCCCcccc---ccccccCCCCCCC
Q 026972 133 YFSTAVAKWDADFYIKVDDDVHVNLG---MVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHE---PEYWKFGEEGNKY 206 (230)
Q Consensus 133 ~l~w~~~~~~~~fvlK~DDD~fvn~~---~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v---~~~~~~~y~~~~y 206 (230)
++.|+-...++++++.++||+.+.++ -+.+.|......+++++-+-.+.. +.+..+ |... .+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Ndn-----G~~~~~~~~~~~l-------yr 155 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDN-----GKEHFVDDTPSLL-------YR 155 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccC-----CcccccCCCcceE-------EE
Confidence 56666554579999999999999998 334444444444554432211111 111111 2211 12
Q ss_pred CcCcccceeeeCHHHHHHH
Q 026972 207 FRHATGQIYAISKDLATYI 225 (230)
Q Consensus 207 Ppy~~G~~YimS~dl~~~i 225 (230)
-.|+.|.|.+|.+++-+.+
T Consensus 156 s~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ecCCCchHHHHHHHHHHHh
Confidence 2357789999988887665
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=64.84 E-value=36 Score=29.88 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=59.7
Q ss_pred CCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCC-ceEEEEee---cCccc--
Q 026972 111 HKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKP-RVYIGCMK---SGPVL-- 184 (230)
Q Consensus 111 ~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~-~~y~G~~~---~~~v~-- 184 (230)
+.++..+...++.- ...=.-.+++.+..... +|++-.++|+.+..+-|.+.+......+ ....|... .++..
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~-~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGD-DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCC-cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 78888876655431 00001145555554222 2999999999999998888887765332 33344321 11111
Q ss_pred -cC-----CCCccccccccccC---CCCCCCCcCcccceeeeCHHHHHHHH
Q 026972 185 -GQ-----KGVKYHEPEYWKFG---EEGNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 185 -r~-----~~~K~~v~~~~~~~---y~~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
+. -...|..+...... .+.....+++.|++.++++++++.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG 183 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVG 183 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhC
Confidence 00 01122121110000 00111222589999999999998874
No 44
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.80 E-value=69 Score=25.36 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=27.4
Q ss_pred HHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 133 YFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 133 ~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
+++.+....+.+|++..|+|.++.++.|...+...
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~ 105 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFI 105 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHH
Confidence 44555555688999999999999998888877664
No 45
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.02 E-value=72 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 131 QIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 131 l~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
-.+++++. ..+.+|++..|||..+..+.|...+...
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 34566665 4688999999999999987766655544
No 46
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=63.62 E-value=14 Score=29.50 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=43.0
Q ss_pred EEEEecCceeEeHHHHHHHHhccCCCCc--eEEEEeecCccccCCC---Cccccccc-ccc-----CCCCCCCCcCcccc
Q 026972 145 FYIKVDDDVHVNLGMVGSTLARHRSKPR--VYIGCMKSGPVLGQKG---VKYHEPEY-WKF-----GEEGNKYFRHATGQ 213 (230)
Q Consensus 145 fvlK~DDD~fvn~~~L~~~L~~~~~~~~--~y~G~~~~~~v~r~~~---~K~~v~~~-~~~-----~y~~~~yPpy~~G~ 213 (230)
||+.+|+|+.+..+-|.+.+.... .++ ...|.... ++.. .++...+. +.. .......+.++.|+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 75 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF----RNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGS 75 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe----cCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCc
Confidence 688999999999988887776654 222 22222211 1111 11111110 000 00112456779999
Q ss_pred eeeeCHHHHHHH
Q 026972 214 IYAISKDLATYI 225 (230)
Q Consensus 214 ~YimS~dl~~~i 225 (230)
+.++++++++.+
T Consensus 76 ~~~~r~~~l~~v 87 (193)
T PF13632_consen 76 GMLFRREALREV 87 (193)
T ss_pred ceeeeHHHHHHh
Confidence 999999999987
No 47
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=61.53 E-value=1.1e+02 Score=27.06 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=73.2
Q ss_pred cCccccCCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHH--------
Q 026972 36 TENLKARRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAE-------- 107 (230)
Q Consensus 36 ~~~~~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E-------- 107 (230)
++..+-+.+..|||+++=.-. ++- +-+-|-+.... ..+...+.+-|+++.+.. ...+.+.|+.+
T Consensus 16 ~~~~~~~~~e~VLILtplrna--~~~--l~~y~~~L~~L---~YP~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~ 87 (269)
T PF03452_consen 16 STSDAARNKESVLILTPLRNA--ASF--LPDYFDNLLSL---TYPHELISLGFLVSDSSE-FDNTLKILEAALKKLQSHG 87 (269)
T ss_pred CCCcccccCCeEEEEEecCCc--hHH--HHHHHHHHHhC---CCCchheEEEEEcCCCch-hHHHHHHHHHHHHHHhccC
Confidence 334445566667766654321 111 44555543210 013457889999999862 23333444433
Q ss_pred --HhhCCcEEEE--ecccc--------c----CcchHHHHHHHH-HHHh---cCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 108 --DEQHKDFLRL--NHIEG--------Y----HELSSKTQIYFS-TAVA---KWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 108 --~~~~gDil~~--d~~D~--------y----~nlt~Ktl~~l~-w~~~---~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
...|+.|.++ ||.+. + ...-.+.++-.+ |+.. .|..+||+-.|-|+.-.++.|++.|..+
T Consensus 88 ~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~ 167 (269)
T PF03452_consen 88 PESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH 167 (269)
T ss_pred cccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhC
Confidence 3456676665 66432 1 122344444333 4443 3689999999999999999999998876
Q ss_pred C
Q 026972 168 R 168 (230)
Q Consensus 168 ~ 168 (230)
+
T Consensus 168 ~ 168 (269)
T PF03452_consen 168 D 168 (269)
T ss_pred C
Confidence 4
No 48
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=59.75 E-value=1.1e+02 Score=26.47 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=59.5
Q ss_pred EEEEcCCCCHH-HHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhh----HHHHHhhCCcEEEEeccccc
Q 026972 49 MGIITAFSSRK-RRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRA----IDAEDEQHKDFLRLNHIEGY 123 (230)
Q Consensus 49 i~V~S~~~~~~-rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~----l~~E~~~~gDil~~d~~D~y 123 (230)
|+|++.-.... -...++..+..... ......+.+ |++..+. ++..... +.+=.+++..-+.+-+...-
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~----~~~~~~~eI-~vldD~~--d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~ 75 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAK----TGLADHFDF-FILSDTR--DPDIWLAEEAAWLDLCEELGAQGRIYYRRRR 75 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHh----cCCcCceEE-EEECCCC--ChHHHHHHHHHHHHHHHHhCCCCcEEEEEcC
Confidence 66777666555 55666666542100 000124555 8885554 3322111 11111223332223333333
Q ss_pred CcchHHHHHHHHHHHhc-CCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 124 HELSSKTQIYFSTAVAK-WDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 124 ~nlt~Ktl~~l~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
.|.-.|+-..-...... .+.+|++-.|-|+.+.++.|.+.+....
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~ 121 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRME 121 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34444555444443332 5789999999999999999888887653
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=59.35 E-value=93 Score=25.06 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=52.0
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCcE-EEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKDF-LRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDi-l~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
.+.++.|-+.+. +...+.+.+..+.++.. ..+...... ... .+++.+.+....+|++.+|+|..+.++.+.
T Consensus 30 ~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 456666655554 23344555555666664 333333221 111 233334444466999999999999999888
Q ss_pred HHHhcc-CCCCceEEEEe
Q 026972 162 STLARH-RSKPRVYIGCM 178 (230)
Q Consensus 162 ~~L~~~-~~~~~~y~G~~ 178 (230)
..+... .....+.+|..
T Consensus 102 ~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 102 KLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHhccCCcEEEEEe
Confidence 888763 33445677763
No 50
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=59.11 E-value=61 Score=22.90 Aligned_cols=70 Identities=11% Similarity=0.207 Sum_probs=40.3
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHh-cCCceEEEEecCceeEeHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVA-KWDADFYIKVDDDVHVNLGM 159 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fvn~~~ 159 (230)
++.-++|+-..+. ....+.| +.+.++-+......+..-... ...++.+.+ ...++|++.+|-|=|+.++.
T Consensus 18 G~d~i~i~d~~s~--D~t~~~l----~~~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 18 GVDHIYIYDDGST--DGTREIL----RALPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEECCCC--ccHHHHH----HhCCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4555566544432 2222223 234556666666666443333 334444444 36899999999999998865
No 51
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=55.28 E-value=23 Score=29.87 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCceEEEEecCceeEeHHHHHHHHhccC
Q 026972 141 WDADFYIKVDDDVHVNLGMVGSTLARHR 168 (230)
Q Consensus 141 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~ 168 (230)
.+.+|++.+|.|+.+..+.|...+....
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~ 99 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMD 99 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHH
Confidence 4899999999999999998888776653
No 52
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=53.52 E-value=1.5e+02 Score=27.99 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=42.3
Q ss_pred HHHHHHHHHHh----cCCceEEEEecCceeEeHHHHHHHHhcc----CCCCceEEEEeecCccccCCCCcccc----ccc
Q 026972 129 KTQIYFSTAVA----KWDADFYIKVDDDVHVNLGMVGSTLARH----RSKPRVYIGCMKSGPVLGQKGVKYHE----PEY 196 (230)
Q Consensus 129 Ktl~~l~w~~~----~~~~~fvlK~DDD~fvn~~~L~~~L~~~----~~~~~~y~G~~~~~~v~r~~~~K~~v----~~~ 196 (230)
|.-.-++|+.+ ..+++.++.+.||.-+-++=+ +|+... ...+.+++-.-.+... .+..+ |..
T Consensus 174 ~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf-~Yf~~~~~ll~~D~sl~ciSawNdnG-----~~~~~~~~~~~~ 247 (434)
T PF03071_consen 174 KIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFF-EYFSATLPLLENDPSLWCISAWNDNG-----KEHFVDDSRPSL 247 (434)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHH-HHHHHHHHHHHH-TTEEEEES--TT------BGGGS-TT-TT-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHH-HHHHHHHHHHhcCCCeEEEEccccCC-----ccccccCCCccc
Confidence 44455667665 247889999999999977643 333222 2345565433222111 11111 111
Q ss_pred cccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 026972 197 WKFGEEGNKYFRHATGQIYAISKDLATYISA 227 (230)
Q Consensus 197 ~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~ 227 (230)
+ |.-+. +.|.|++|++++-..|..
T Consensus 248 l---yRsdf----fpglGWml~r~~w~el~~ 271 (434)
T PF03071_consen 248 L---YRSDF----FPGLGWMLTRELWDELEP 271 (434)
T ss_dssp E---EEESS-------SSEEEEHHHHHHHGG
T ss_pred e---Eeccc----CCchHHHhhHHHHHhhcc
Confidence 1 21223 459999999999887654
No 53
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=52.74 E-value=52 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=26.9
Q ss_pred HHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 133 YFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 133 ~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
+++.+.+....+|++..|+|..+.++-|...+...
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 34444555678999999999999888777777665
No 54
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=51.99 E-value=51 Score=29.38 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEeccc--ccCcchHHHHHHHH
Q 026972 58 RKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIE--GYHELSSKTQIYFS 135 (230)
Q Consensus 58 ~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D--~y~nlt~Ktl~~l~ 135 (230)
.+.|+.-|..-... ......+-++|+=|.. .....|..=...+.-++.+++.+ .+..-+.--..+..
T Consensus 19 ~~~R~f~~~~~~k~------fts~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~ 87 (346)
T COG4092 19 TDSRQFSRTSAVKV------FTSSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGAD 87 (346)
T ss_pred hHHHHHhhHhhhhh------ccccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccch
Confidence 35566665543322 1123455555555443 33456666666777788888755 34443444556777
Q ss_pred HHHhcCCceEEEEecCceeEeHHHHHHHHh
Q 026972 136 TAVAKWDADFYIKVDDDVHVNLGMVGSTLA 165 (230)
Q Consensus 136 w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~ 165 (230)
|+.+.|+..+++..|-|+|.-.+++.+.|.
T Consensus 88 Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 88 YSHEKCESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred hhhccccccEEEEEeccccccHHHHHHHHH
Confidence 877778999999999999999999999883
No 55
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=51.50 E-value=1.3e+02 Score=24.30 Aligned_cols=90 Identities=13% Similarity=0.018 Sum_probs=48.7
Q ss_pred HHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCce--EEEEee--cCcc----ccCC--CCcccccc-ccccCCC
Q 026972 134 FSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRV--YIGCMK--SGPV----LGQK--GVKYHEPE-YWKFGEE 202 (230)
Q Consensus 134 l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~--y~G~~~--~~~v----~r~~--~~K~~v~~-~~~~~y~ 202 (230)
++.+.+..+.+|++..|+|+++.++.|...+......+++ ..|... .... .+.. ....+... ... .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 3444444588999999999999998887777665432322 222211 1110 0000 00001110 000 0
Q ss_pred CCCCCcCcccceeeeCHHHHHHHH
Q 026972 203 GNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 203 ~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
......++.|++.++++++++.+.
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig 176 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIG 176 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhC
Confidence 012245678999999999999875
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=51.29 E-value=1.3e+02 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEE
Q 026972 134 FSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGC 177 (230)
Q Consensus 134 l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~ 177 (230)
...+.+..+.+|++..|+|..+.+..+...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34444556789999999999999988776554443223334555
No 57
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.01 E-value=1.1e+02 Score=24.40 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHhcCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEE
Q 026972 135 STAVAKWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGC 177 (230)
Q Consensus 135 ~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~ 177 (230)
+.+....+.+|++.+|+|..+.++.+.+.+...... ...+|.
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~ 106 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGA 106 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEE
Confidence 334444568999999999999887777765554333 333444
No 58
>PLN03181 glycosyltransferase; Provisional
Probab=44.59 E-value=1.9e+02 Score=27.33 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=52.5
Q ss_pred HHHHHhhccCCcCcccccCCCceEEEEEeecCCCC-----Cchh-hhh---HHHHHhhCC-cEEEEec-cc-ccCcchHH
Q 026972 62 DSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATA-----GGVL-DRA---IDAEDEQHK-DFLRLNH-IE-GYHELSSK 129 (230)
Q Consensus 62 ~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~-----~~~~-~~~---l~~E~~~~g-Dil~~d~-~D-~y~nlt~K 129 (230)
+.-|+.|.+.-. +...+..-+++.|.|..+.. ++.. .+. =.+=+++|| ++...+. .+ .+.....|
T Consensus 109 D~kR~~Wl~~~p---~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaK 185 (453)
T PLN03181 109 DEKRAEWLKLHP---SFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAK 185 (453)
T ss_pred HHHHHHHHHhCC---CCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhH
Confidence 444566765321 01123445677777766321 1111 111 122356777 5554442 23 45556777
Q ss_pred HHHHHHHHHhcCCceEEEEecCceeE
Q 026972 130 TQIYFSTAVAKWDADFYIKVDDDVHV 155 (230)
Q Consensus 130 tl~~l~w~~~~~~~~fvlK~DDD~fv 155 (230)
..+.-.-+.++|+++|+.-+|.|+++
T Consensus 186 ipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 186 LPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 77766666779999999999999887
No 59
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=42.95 E-value=1.6e+02 Score=23.05 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=50.5
Q ss_pred HHHHHHh-cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCccccc---ccccc-------CC
Q 026972 133 YFSTAVA-KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHEP---EYWKF-------GE 201 (230)
Q Consensus 133 ~l~w~~~-~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v~---~~~~~-------~y 201 (230)
+++++.. ..+.+|++.+|.|+.+.++.|...+........+..|+... +++...|.-. ..+.+ ..
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLGR 146 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 24689999999999999888877776664444555665431 1112222100 00000 00
Q ss_pred CCCCCCcCcccceeeeCHHHHHH
Q 026972 202 EGNKYFRHATGQIYAISKDLATY 224 (230)
Q Consensus 202 ~~~~yPpy~~G~~YimS~dl~~~ 224 (230)
..-.-+.++.|.++++++++++.
T Consensus 147 ~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 147 SNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHcCCCeeecCchhhhHHHHHHh
Confidence 00122346789999999999987
No 60
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=41.80 E-value=2e+02 Score=23.82 Aligned_cols=132 Identities=11% Similarity=0.061 Sum_probs=68.1
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCc--EEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKD--FLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMV 160 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gD--il~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L 160 (230)
.+.+++|-..+. | .+.+.+.+-.++|++ +......... +. -.+++.+....+.+|++.+|+|..+.++.|
T Consensus 40 ~~eiivvDdgS~--D-~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~----~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP--D-GTQDVVKQLQKVYGEDRILLRPRPGKL-GL----GTAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC--C-CHHHHHHHHHHhcCCCcEEEEecCCCC-CH----HHHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 566666665554 2 233444444455653 3333222111 21 124444444457899999999999999888
Q ss_pred HHHHhccC-CCCceEEEEee--cCc-----cccCCCCc--cccccccccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 026972 161 GSTLARHR-SKPRVYIGCMK--SGP-----VLGQKGVK--YHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISA 227 (230)
Q Consensus 161 ~~~L~~~~-~~~~~y~G~~~--~~~-----v~r~~~~K--~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~~ 227 (230)
.+.+.... ....+..|... .+. ..|.-.++ ..+.. +.+ . ..-+.+.|++.++++++++.|..
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~---~-~~~~d~~g~~~~~rr~~~~~i~~ 183 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQ-TLL---W-PGVSDLTGSFRLYKRSALEDLVS 183 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHH-HHh---C-CCCCcCCCcccceeHHHHHHHHh
Confidence 77776542 23356666432 111 00100000 00000 000 0 11123678899999999998854
No 61
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=39.19 E-value=3.6e+02 Score=25.96 Aligned_cols=107 Identities=6% Similarity=-0.120 Sum_probs=55.5
Q ss_pred CceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccc
Q 026972 43 RKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEG 122 (230)
Q Consensus 43 ~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~ 122 (230)
+.+.+-|+|+.--+..--.+.|+..=.+. . ....+++++. ... ++.+.+.+++=..+|..+..+-. +
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~l-d-------Y~~~eIiVv~-d~n--dd~T~~~v~~l~~~~p~v~~vv~-~- 130 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLATL-D-------YENYRIFVGT-YPN--DPATLREVDRLAARYPRVHLVIV-P- 130 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHcC-C-------CCCeEEEEEE-CCC--ChhHHHHHHHHHHHCCCeEEEEe-C-
Confidence 35567777776654433334444331111 1 1233444433 222 23334444433566776543332 1
Q ss_pred cCcchHHHHHHHHHHHh-------c--CCceEEEEecCceeEeHHHHHHH
Q 026972 123 YHELSSKTQIYFSTAVA-------K--WDADFYIKVDDDVHVNLGMVGST 163 (230)
Q Consensus 123 y~nlt~Ktl~~l~w~~~-------~--~~~~fvlK~DDD~fvn~~~L~~~ 163 (230)
..+.+.|.- +++|+.+ + .++++++..|-|..+.++.|..+
T Consensus 131 ~~gp~~Ka~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~ 179 (504)
T PRK14716 131 HDGPTSKAD-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLY 179 (504)
T ss_pred CCCCCCHHH-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHH
Confidence 223345664 4444432 1 25699999999999999987654
No 62
>PHA01631 hypothetical protein
Probab=37.00 E-value=1.1e+02 Score=25.07 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=51.2
Q ss_pred CCcEEEEecccccCcchHHHHHHHHHHHh---cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCC
Q 026972 111 HKDFLRLNHIEGYHELSSKTQIYFSTAVA---KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQK 187 (230)
Q Consensus 111 ~gDil~~d~~D~y~nlt~Ktl~~l~w~~~---~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~ 187 (230)
+.+|+.......++.+ ..-.+|..+.+ .-+-+.++.+|-|++|+.-. ..+ +...++.=|.. .+
T Consensus 39 ~~~Ii~~~t~~e~Rr~--RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~~----~~~~v~t~CiP----A~-- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWL--RIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EII----PNERVFTPCYW----LY-- 104 (176)
T ss_pred CCceEEecccchhHHH--HHHHHHHHHHHhhccCCccEEEEeccceEecCcc--ccc----cCCCccceeee----ee--
Confidence 5677776543323322 22233344433 24677888899999987653 111 22233333431 01
Q ss_pred CCccccccccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 026972 188 GVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 188 ~~K~~v~~~~~~~y~~~~yPpy~~G~~YimS~dl~~~i~ 226 (230)
.| |....-+||.|--+++.+..+..|.
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~ 131 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLE 131 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHH
Confidence 01 2245568899999999999888775
No 63
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=34.78 E-value=40 Score=29.12 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEe
Q 026972 141 WDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCM 178 (230)
Q Consensus 141 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~ 178 (230)
...+-|+-+|||+.+..+.|.-.+......+.-++|..
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 36788999999999999999877777665455567754
No 64
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=33.88 E-value=2.6e+02 Score=22.74 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceEEEEecCceeEeHHHHHHHHhc
Q 026972 133 YFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLAR 166 (230)
Q Consensus 133 ~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~ 166 (230)
+++.+.+..+.+|++.+|.|+.+.++.|...+..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhh
Confidence 4556666668999999999999999888884433
No 65
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=32.60 E-value=95 Score=31.95 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHHHHHHHHh------cCCceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCcccc
Q 026972 129 KTQIYFSTAVA------KWDADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHE 193 (230)
Q Consensus 129 Ktl~~l~w~~~------~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v 193 (230)
|.+...+|+.. .+.+.|++-+|-|+-+.++.+...++..+..+++ |+.-+ -|.++.++|.+
T Consensus 421 krw~~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~V--ggaCG--~I~~~~~~w~v 487 (862)
T KOG2571|consen 421 KRWNQHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQV--GGACG--RILNKGGSWVV 487 (862)
T ss_pred hhHHHHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCccc--ceecc--ccccCCCceEE
Confidence 44445555443 2688899999999999999999999988755543 33322 33456677744
No 66
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=31.34 E-value=4.3e+02 Score=24.98 Aligned_cols=73 Identities=12% Similarity=0.017 Sum_probs=47.2
Q ss_pred ceEEEEEeecCCCC------CchhhhhH---HHHHhhCCcEEEEec---ccccCcchHHHHHHHHHHHhcCCceEEEEec
Q 026972 83 GIIMRFVIGHSATA------GGVLDRAI---DAEDEQHKDFLRLNH---IEGYHELSSKTQIYFSTAVAKWDADFYIKVD 150 (230)
Q Consensus 83 ~v~~~FvvG~~~~~------~~~~~~~l---~~E~~~~gDil~~d~---~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~D 150 (230)
.-+++.|.|..+.. +.-+.+.+ .+=+++||=-++.+. .+.......|.-+..+.+.++|+++|+.=+|
T Consensus 126 ~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaKlpaLR~aM~~~PeaEWiWWLD 205 (429)
T PLN03182 126 KPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAKLPLLRKLMLAHPEVEWIWWMD 205 (429)
T ss_pred CCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhHHHHHHHHHHHCCCceEEEEec
Confidence 34788888877642 11111111 223567774344454 2334456778888888888899999999999
Q ss_pred CceeE
Q 026972 151 DDVHV 155 (230)
Q Consensus 151 DD~fv 155 (230)
.|+++
T Consensus 206 sDALI 210 (429)
T PLN03182 206 SDALF 210 (429)
T ss_pred CCcee
Confidence 99987
No 67
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=30.11 E-value=2.1e+02 Score=20.41 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhc
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLAR 166 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~ 166 (230)
.++..+..+.+.+|++.+|+|..+.++.+...+..
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 33444444448999999999999998888776333
No 68
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=29.78 E-value=1.5e+02 Score=23.64 Aligned_cols=80 Identities=10% Similarity=0.017 Sum_probs=42.6
Q ss_pred ceEEEEecCceeEeHHHHHHHHhccCCCCceEEEEeecCccccCCCCccccc----ccccc-----CCCCCCCCcCcccc
Q 026972 143 ADFYIKVDDDVHVNLGMVGSTLARHRSKPRVYIGCMKSGPVLGQKGVKYHEP----EYWKF-----GEEGNKYFRHATGQ 213 (230)
Q Consensus 143 ~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~v~r~~~~K~~v~----~~~~~-----~y~~~~yPpy~~G~ 213 (230)
.+|++..|.|..+.++.|...+.... .+++ |.+.+.....+...+|... +.+.+ ......-..++.|.
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~ 166 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRV--AGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGN 166 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCce--EEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCe
Confidence 47999999999999998888554432 2332 2111111112233333211 00000 00000111236899
Q ss_pred eeeeCHHHHHHH
Q 026972 214 IYAISKDLATYI 225 (230)
Q Consensus 214 ~YimS~dl~~~i 225 (230)
+.++++.+++.+
T Consensus 167 ~~~~r~~~l~~v 178 (191)
T cd06436 167 GQFMRLSALDGL 178 (191)
T ss_pred eEEEeHHHHHHh
Confidence 999999999987
No 69
>PRK10073 putative glycosyl transferase; Provisional
Probab=29.19 E-value=4.1e+02 Score=23.60 Aligned_cols=76 Identities=13% Similarity=0.010 Sum_probs=44.0
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGS 162 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 162 (230)
.+.++.|-..+. | ...+.+.+-.+++..+.++.-. |.- .-.+.+.+.+..+.+|++..|+|-++.++.+..
T Consensus 35 ~~EIIiVdDgSt--D-~t~~i~~~~~~~~~~i~vi~~~----n~G--~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~ 105 (328)
T PRK10073 35 ALEIIIVNDGST--D-NSVEIAKHYAENYPHVRLLHQA----NAG--VSVARNTGLAVATGKYVAFPDADDVVYPTMYET 105 (328)
T ss_pred CeEEEEEeCCCC--c-cHHHHHHHHHhhCCCEEEEECC----CCC--hHHHHHHHHHhCCCCEEEEECCCCccChhHHHH
Confidence 455555554443 2 2223333334455556555421 221 233445555667889999999999999987777
Q ss_pred HHhcc
Q 026972 163 TLARH 167 (230)
Q Consensus 163 ~L~~~ 167 (230)
.+...
T Consensus 106 l~~~~ 110 (328)
T PRK10073 106 LMTMA 110 (328)
T ss_pred HHHHH
Confidence 66543
No 70
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=28.91 E-value=3.8e+02 Score=23.08 Aligned_cols=78 Identities=12% Similarity=0.016 Sum_probs=48.9
Q ss_pred CCceEEEEEeecCCCCCchhhhhHHHHHhhCCcE-EEE-ecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHH
Q 026972 81 EKGIIMRFVIGHSATAGGVLDRAIDAEDEQHKDF-LRL-NHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLG 158 (230)
Q Consensus 81 ~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDi-l~~-d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~ 158 (230)
...+.+++|=+.++ ....+.|.+-.+.++-+ ++- +......+. -.+.+-+.+..+.+|++..|.|+++.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~----a~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSR----AKARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCH----HHHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34566666666554 33345677677777766 322 222111121 2234444455689999999999999999
Q ss_pred HHHHHHh
Q 026972 159 MVGSTLA 165 (230)
Q Consensus 159 ~L~~~L~ 165 (230)
.+.+.+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9888888
No 71
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=28.40 E-value=65 Score=27.15 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHH
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGST 163 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~ 163 (230)
.+++-+.+..+++|++.++||+++.-++++..
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~ 75 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWLED 75 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHHHH
Confidence 47777777789999999999999975554443
No 72
>PRK10018 putative glycosyl transferase; Provisional
Probab=28.33 E-value=4e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 133 YFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 133 ~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
+.+.+.+....+|++..|+|..+.++.|...+...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34444455688999999999999998887766544
No 73
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=26.90 E-value=65 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=27.1
Q ss_pred cCccccCCceeEEEEEE-cCCCCHHHHHHHHHhhccC
Q 026972 36 TENLKARRKVFFVMGII-TAFSSRKRRDSIRETWMPK 71 (230)
Q Consensus 36 ~~~~~~~~~~~lli~V~-S~~~~~~rR~~IR~TW~~~ 71 (230)
+++...+++.++|+++. .++....+-.+||+.|...
T Consensus 51 ~~g~~~rE~Skvv~i~~~~~~~~~~~i~~Ir~~Yk~r 87 (104)
T PF12098_consen 51 ATGRLIRERSKVVIIVHPDTPAAEARIEAIREAYKQR 87 (104)
T ss_pred CCCcEeecccEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 34456788888888887 4555666779999999875
No 74
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=26.38 E-value=34 Score=25.14 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.2
Q ss_pred CceEEEEecCceeEeHHH
Q 026972 142 DADFYIKVDDDVHVNLGM 159 (230)
Q Consensus 142 ~~~fvlK~DDD~fvn~~~ 159 (230)
.-.|-+.+|||++|-+++
T Consensus 19 ~e~F~F~GDDDvWVFIn~ 36 (90)
T TIGR02148 19 GQYFEFRGDDDVWVFINN 36 (90)
T ss_pred CcEEEEEcCCeEEEEECC
Confidence 346788999999999976
No 75
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=25.76 E-value=93 Score=29.01 Aligned_cols=82 Identities=9% Similarity=0.004 Sum_probs=48.2
Q ss_pred ceEEEEEeecCCCCCchhhhhHHHHHhhCCcEEEEeccccc-CcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHH
Q 026972 83 GIIMRFVIGHSATAGGVLDRAIDAEDEQHKDFLRLNHIEGY-HELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVG 161 (230)
Q Consensus 83 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~gDil~~d~~D~y-~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~ 161 (230)
...++|.+-.+. +...+.++.=.++|..+=--=|..+- -.+.-|.-.++-= .+.-+++||+..|||+++.++.+.
T Consensus 114 ~~ElLfcv~s~e---DpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSE---DPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCC---CcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHH-HHHhcCCEEEEecCCeeecCchHH
Confidence 566788887664 33345666667777742111111111 1233444322211 111256799999999999999999
Q ss_pred HHHhccC
Q 026972 162 STLARHR 168 (230)
Q Consensus 162 ~~L~~~~ 168 (230)
+......
T Consensus 190 dm~t~M~ 196 (431)
T KOG2547|consen 190 DMATTMM 196 (431)
T ss_pred HHHHhhh
Confidence 9887764
No 76
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=24.49 E-value=3.9e+02 Score=21.97 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhc----CCceEEEEecCceeEeHHHHHHHHhccCCCC---ceEEEEeec------CccccCCCCcccccc
Q 026972 129 KTQIYFSTAVAK----WDADFYIKVDDDVHVNLGMVGSTLARHRSKP---RVYIGCMKS------GPVLGQKGVKYHEPE 195 (230)
Q Consensus 129 Ktl~~l~w~~~~----~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~---~~y~G~~~~------~~v~r~~~~K~~v~~ 195 (230)
-|-.++.-+... ...+.++-+.+|++.+. .+.++|+.+.... .+.++.... +.+..+..+ .|-.
T Consensus 85 Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~--~V~~ 161 (248)
T PF00483_consen 85 GTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG--RVIR 161 (248)
T ss_dssp CHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS--EEEE
T ss_pred chhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeeccce--eEEE
Confidence 344454444442 12345777899998887 6666666553222 234443321 123333222 2322
Q ss_pred ccccCCCCCCC-CcCcccceeeeCHHHHHHHH
Q 026972 196 YWKFGEEGNKY-FRHATGQIYAISKDLATYIS 226 (230)
Q Consensus 196 ~~~~~y~~~~y-Ppy~~G~~YimS~dl~~~i~ 226 (230)
-..- |.... ..++.++.|+++..+...+.
T Consensus 162 ~~EK--P~~~~~~~~~~~G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 162 IVEK--PDNPNASNLINTGIYIFKPEIFDFLL 191 (248)
T ss_dssp EEES--CSSHSHSSEEEEEEEEEETHHHHHHH
T ss_pred Eecc--CcccccceeccCceEEEcchHHHHHh
Confidence 1100 11112 34688999999999999885
No 77
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=24.30 E-value=3.8e+02 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=19.3
Q ss_pred CCceEEEEecCceeEeHH---HHHHHHhcc
Q 026972 141 WDADFYIKVDDDVHVNLG---MVGSTLARH 167 (230)
Q Consensus 141 ~~~~fvlK~DDD~fvn~~---~L~~~L~~~ 167 (230)
....|++-..||+..... .+..++...
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred hcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 367899999999988775 344445444
No 78
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=23.99 E-value=38 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=20.0
Q ss_pred HhhccCCcCcccccCCCceEEEEEeecCCC
Q 026972 66 ETWMPKGDGLLKLENEKGIIMRFVIGHSAT 95 (230)
Q Consensus 66 ~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~ 95 (230)
++|++.. ++..++..+.-+|++|.+..
T Consensus 9 qSWM~DL---rS~I~~~~I~ql~ipGsHns 35 (51)
T PF03490_consen 9 QSWMSDL---RSSIGEMAITQLFIPGSHNS 35 (51)
T ss_pred HHHHHHH---HHHHhcceeeeEEecccccc
Confidence 6788874 23346788999999999863
No 79
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=22.76 E-value=1.2e+02 Score=25.99 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHhcCCceEEEEecCceeEeHH
Q 026972 126 LSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLG 158 (230)
Q Consensus 126 lt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~ 158 (230)
...|..+.-+.+.++|+++||+-+|.|+++-=+
T Consensus 60 ~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~ 92 (239)
T PF05637_consen 60 SWAKIPALRAAMKKYPEAEWVWWLDSDALIMNP 92 (239)
T ss_dssp HHTHHHHHHHHHHH-TT-SEEEEE-TTEEE---
T ss_pred hhHHHHHHHHHHHhCCCCCEEEEEcCCeEEEec
Confidence 356888887787778999999999999987544
No 80
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=21.72 E-value=5.8e+02 Score=22.75 Aligned_cols=129 Identities=11% Similarity=-0.037 Sum_probs=65.1
Q ss_pred cCCceeEEEEEEcCCCCHHHHHHHHHhhccCCcCcccccCCCceEEEEEeecCCCCCchhhhhHHHHHhhC----CcEEE
Q 026972 41 ARRKVFFVMGIITAFSSRKRRDSIRETWMPKGDGLLKLENEKGIIMRFVIGHSATAGGVLDRAIDAEDEQH----KDFLR 116 (230)
Q Consensus 41 ~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~----gDil~ 116 (230)
....+.+-|+|+.--....-...++++......... ......+.+++|-..+. |. +.+.+.+-.+.+ .++-+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~-~~~~~~~EIIVVDDgSt--D~-T~~i~~~~~~~~~~~~~~i~v 141 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSR-KDPKFKYEIIIVNDGSK--DK-TLKVAKDFWRQNINPNIDIRL 141 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhc-cCCCCCEEEEEEeCCCC--Cc-hHHHHHHHHHhcCCCCCcEEE
Confidence 445667777777765544444556665543110000 00122466666665554 22 222222223333 13544
Q ss_pred EecccccCcchHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhccC----CCCceEEEEe
Q 026972 117 LNHIEGYHELSSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARHR----SKPRVYIGCM 178 (230)
Q Consensus 117 ~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~----~~~~~y~G~~ 178 (230)
+....+. . | -.+++....+...+|++.+|.|....++.+...+.... +.-.+.+|..
T Consensus 142 i~~~~N~-G---~-~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR 202 (333)
T PTZ00260 142 LSLLRNK-G---K-GGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSR 202 (333)
T ss_pred EEcCCCC-C---h-HHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeec
Confidence 4443221 1 1 12333344445779999999999999877655554331 2235677764
No 81
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=21.64 E-value=1.3e+02 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhcc
Q 026972 132 IYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLARH 167 (230)
Q Consensus 132 ~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 167 (230)
.+.+++......+|++..|.|.++.++.+...+...
T Consensus 61 ~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 61 AQRNFALELATNDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred HHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 455677776678899999999999887766555443
No 82
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=21.23 E-value=9.3e+02 Score=24.96 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhcCCceEEEEecCceeEeHHHHHHHHhc
Q 026972 127 SSKTQIYFSTAVAKWDADFYIKVDDDVHVNLGMVGSTLAR 166 (230)
Q Consensus 127 t~Ktl~~l~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~ 166 (230)
..|.- .++.+.++.+.+|++..|.|..+..+-|...+..
T Consensus 325 ~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~ 363 (852)
T PRK11498 325 HAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGW 363 (852)
T ss_pred cchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHH
Confidence 34443 5666666678999999999999998877766543
No 83
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=21.01 E-value=1.3e+02 Score=27.41 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=42.3
Q ss_pred hhhHHHHHhhCCcEEEEec--cccc---CcchHHHHHHHHHHHhc-CCceEEEEecCceeEeHHHHHHHHhc
Q 026972 101 DRAIDAEDEQHKDFLRLNH--IEGY---HELSSKTQIYFSTAVAK-WDADFYIKVDDDVHVNLGMVGSTLAR 166 (230)
Q Consensus 101 ~~~l~~E~~~~gDil~~d~--~D~y---~nlt~Ktl~~l~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~ 166 (230)
.+-|.+=.++|-+-+-+-. .-.. ....-+....+.|+... ++.+|++|+|.|-..+...|.+..-.
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 3445556677777443311 0000 11122455677888874 78999999999999999998876544
Done!