Query 026973
Match_columns 230
No_of_seqs 298 out of 2399
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 1.8E-20 3.9E-25 129.8 9.8 97 56-152 7-103 (103)
2 cd01807 GDX_N ubiquitin-like d 99.8 9.4E-21 2E-25 124.2 7.5 73 1-73 1-73 (74)
3 cd01802 AN1_N ubiquitin-like d 99.8 3.9E-20 8.5E-25 128.1 9.2 95 134-228 9-103 (103)
4 PTZ00044 ubiquitin; Provisiona 99.8 1.1E-19 2.5E-24 119.8 8.0 74 1-74 1-74 (76)
5 cd01793 Fubi Fubi ubiquitin-li 99.8 1.3E-19 2.9E-24 118.7 7.8 73 1-75 1-73 (74)
6 cd01797 NIRF_N amino-terminal 99.8 1.2E-19 2.5E-24 119.7 7.4 75 1-75 1-77 (78)
7 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 2.5E-19 5.5E-24 116.3 7.2 70 1-70 2-71 (73)
8 cd01803 Ubiquitin Ubiquitin. U 99.8 1.1E-18 2.3E-23 115.2 7.9 75 1-75 1-75 (76)
9 cd01806 Nedd8 Nebb8-like ubiq 99.8 1.4E-18 3.1E-23 114.6 8.4 74 1-74 1-74 (76)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 8.6E-19 1.9E-23 114.9 7.2 72 3-74 1-72 (74)
11 cd01804 midnolin_N Ubiquitin-l 99.8 1.2E-18 2.7E-23 115.0 7.8 75 1-76 2-76 (78)
12 cd01805 RAD23_N Ubiquitin-like 99.8 2.4E-18 5.2E-23 113.8 8.2 73 1-73 1-75 (77)
13 cd01794 DC_UbP_C dendritic cel 99.8 1.4E-18 3.1E-23 112.0 6.4 68 4-71 2-69 (70)
14 cd01793 Fubi Fubi ubiquitin-li 99.8 2.5E-18 5.4E-23 112.7 7.6 74 153-228 1-74 (74)
15 cd01807 GDX_N ubiquitin-like d 99.8 1.9E-18 4.1E-23 113.3 7.1 73 77-149 1-73 (74)
16 cd01809 Scythe_N Ubiquitin-lik 99.8 3.2E-18 6.9E-23 111.7 7.5 71 1-71 1-71 (72)
17 cd01798 parkin_N amino-termina 99.7 3.1E-18 6.7E-23 111.0 6.5 70 3-72 1-70 (70)
18 cd01810 ISG15_repeat2 ISG15 ub 99.7 4.7E-18 1E-22 111.3 7.2 74 155-228 1-74 (74)
19 PTZ00044 ubiquitin; Provisiona 99.7 6E-18 1.3E-22 111.6 7.5 76 153-228 1-76 (76)
20 cd01804 midnolin_N Ubiquitin-l 99.7 1.2E-17 2.6E-22 110.3 8.2 77 76-153 1-77 (78)
21 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.2E-17 2.6E-22 110.2 8.1 76 153-228 1-76 (76)
22 cd01797 NIRF_N amino-terminal 99.7 1.1E-17 2.4E-22 110.2 7.5 75 77-151 1-77 (78)
23 cd01803 Ubiquitin Ubiquitin. U 99.7 1.1E-17 2.5E-22 110.3 7.5 76 153-228 1-76 (76)
24 cd01792 ISG15_repeat1 ISG15 ub 99.7 1E-17 2.2E-22 111.4 7.0 73 1-73 3-77 (80)
25 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.9E-17 4.1E-22 107.5 7.6 70 77-146 2-71 (73)
26 KOG0003 Ubiquitin/60s ribosoma 99.7 8.8E-19 1.9E-23 117.0 1.1 76 1-76 1-76 (128)
27 KOG0005 Ubiquitin-like protein 99.7 8.6E-18 1.9E-22 100.1 4.3 70 1-70 1-70 (70)
28 PF00240 ubiquitin: Ubiquitin 99.7 3.3E-17 7.2E-22 106.0 7.2 68 6-73 1-68 (69)
29 cd01808 hPLIC_N Ubiquitin-like 99.7 4.2E-17 9.1E-22 106.0 7.2 71 1-72 1-71 (71)
30 KOG0004 Ubiquitin/40S ribosoma 99.7 8.6E-18 1.9E-22 120.7 4.2 76 1-76 1-76 (156)
31 cd01794 DC_UbP_C dendritic cel 99.7 3.8E-17 8.3E-22 105.4 6.6 69 79-147 1-69 (70)
32 cd01796 DDI1_N DNA damage indu 99.7 3.7E-17 8.1E-22 106.0 6.1 68 3-70 1-70 (71)
33 cd01805 RAD23_N Ubiquitin-like 99.7 1.3E-16 2.8E-21 105.5 7.9 73 77-149 1-75 (77)
34 cd01798 parkin_N amino-termina 99.7 7.5E-17 1.6E-21 104.5 6.5 70 79-148 1-70 (70)
35 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.4E-16 5.3E-21 104.7 7.6 74 77-150 3-78 (80)
36 cd01809 Scythe_N Ubiquitin-lik 99.7 2.5E-16 5.4E-21 102.7 7.1 71 77-147 1-71 (72)
37 cd01812 BAG1_N Ubiquitin-like 99.7 2.5E-16 5.5E-21 102.4 7.0 70 1-71 1-70 (71)
38 cd01800 SF3a120_C Ubiquitin-li 99.7 1.9E-16 4.1E-21 104.2 6.4 68 8-75 5-72 (76)
39 PF00240 ubiquitin: Ubiquitin 99.7 2.7E-16 5.8E-21 101.7 7.0 69 158-226 1-69 (69)
40 cd01800 SF3a120_C Ubiquitin-li 99.6 4.5E-16 9.7E-21 102.4 6.3 70 160-229 5-74 (76)
41 cd01790 Herp_N Homocysteine-re 99.6 5.8E-16 1.3E-20 101.0 6.3 71 1-71 2-78 (79)
42 cd01808 hPLIC_N Ubiquitin-like 99.6 1.1E-15 2.4E-20 99.3 6.7 71 77-148 1-71 (71)
43 cd01763 Sumo Small ubiquitin-r 99.6 2.3E-15 5E-20 101.5 8.5 77 152-228 11-87 (87)
44 cd01796 DDI1_N DNA damage indu 99.6 1.4E-15 3E-20 98.6 6.5 68 79-146 1-70 (71)
45 cd01813 UBP_N UBP ubiquitin pr 99.6 2.1E-15 4.5E-20 98.4 7.0 69 1-70 1-72 (74)
46 cd01790 Herp_N Homocysteine-re 99.6 5.3E-15 1.1E-19 96.5 7.2 72 76-147 1-78 (79)
47 KOG0005 Ubiquitin-like protein 99.6 1.6E-15 3.4E-20 90.4 4.3 70 77-146 1-70 (70)
48 KOG0003 Ubiquitin/60s ribosoma 99.6 1.9E-16 4.1E-21 105.9 0.3 76 154-229 2-77 (128)
49 cd01812 BAG1_N Ubiquitin-like 99.6 6.7E-15 1.5E-19 95.6 7.2 69 77-146 1-69 (71)
50 smart00213 UBQ Ubiquitin homol 99.6 5.9E-15 1.3E-19 93.8 6.5 64 1-65 1-64 (64)
51 cd01763 Sumo Small ubiquitin-r 99.6 1.8E-14 3.9E-19 97.2 8.8 79 74-152 9-87 (87)
52 cd01813 UBP_N UBP ubiquitin pr 99.6 8.3E-15 1.8E-19 95.5 7.0 69 77-146 1-72 (74)
53 cd01799 Hoil1_N Ubiquitin-like 99.5 1.2E-14 2.7E-19 94.8 6.0 64 7-71 9-74 (75)
54 KOG0004 Ubiquitin/40S ribosoma 99.5 1.3E-14 2.8E-19 104.4 4.4 77 153-229 1-77 (156)
55 TIGR00601 rad23 UV excision re 99.5 4.1E-14 8.8E-19 119.1 7.6 73 1-73 1-76 (378)
56 cd01795 USP48_C USP ubiquitin- 99.5 4.9E-14 1.1E-18 93.7 5.7 63 11-73 15-78 (107)
57 smart00213 UBQ Ubiquitin homol 99.5 1.6E-13 3.5E-18 87.1 6.3 64 77-141 1-64 (64)
58 cd01799 Hoil1_N Ubiquitin-like 99.4 4.6E-13 1E-17 87.4 6.5 64 83-147 9-74 (75)
59 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.7E-13 3.7E-18 88.1 4.4 53 19-71 19-74 (75)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 2.9E-13 6.2E-18 87.1 4.2 54 171-224 19-75 (75)
61 TIGR00601 rad23 UV excision re 99.4 6.3E-13 1.4E-17 111.9 7.5 74 77-150 1-77 (378)
62 cd01769 UBL Ubiquitin-like dom 99.4 1.5E-12 3.3E-17 83.8 6.8 67 5-71 2-68 (69)
63 cd01814 NTGP5 Ubiquitin-like N 99.4 1.6E-12 3.5E-17 89.2 5.7 76 75-150 3-92 (113)
64 cd01814 NTGP5 Ubiquitin-like N 99.3 9.8E-13 2.1E-17 90.3 4.4 73 2-74 6-92 (113)
65 cd01769 UBL Ubiquitin-like dom 99.3 6.1E-12 1.3E-16 81.0 7.0 67 81-147 2-68 (69)
66 PF11976 Rad60-SLD: Ubiquitin- 99.3 7E-12 1.5E-16 81.6 6.5 71 1-71 1-72 (72)
67 cd01795 USP48_C USP ubiquitin- 99.3 7.3E-12 1.6E-16 83.4 5.8 61 88-148 16-77 (107)
68 KOG0011 Nucleotide excision re 99.3 7.4E-12 1.6E-16 100.8 6.4 74 1-74 1-76 (340)
69 PF11976 Rad60-SLD: Ubiquitin- 99.3 2.1E-11 4.6E-16 79.3 7.2 71 77-147 1-72 (72)
70 cd01788 ElonginB Ubiquitin-lik 99.3 1.3E-11 2.7E-16 84.4 6.2 72 1-72 1-80 (119)
71 KOG0010 Ubiquitin-like protein 99.3 8.7E-12 1.9E-16 105.5 6.1 73 1-74 16-88 (493)
72 KOG0010 Ubiquitin-like protein 99.2 1.3E-11 2.8E-16 104.5 6.6 74 76-150 15-88 (493)
73 cd01789 Alp11_N Ubiquitin-like 99.2 1.4E-10 3E-15 77.5 7.3 70 2-71 3-80 (84)
74 cd01788 ElonginB Ubiquitin-lik 99.2 9.5E-11 2.1E-15 80.1 6.5 71 160-230 9-86 (119)
75 KOG0011 Nucleotide excision re 99.2 7.7E-11 1.7E-15 95.0 6.7 74 77-150 1-76 (340)
76 cd01811 OASL_repeat1 2'-5' oli 99.1 3.6E-10 7.8E-15 71.0 7.3 72 1-73 1-77 (80)
77 cd01789 Alp11_N Ubiquitin-like 99.1 6.8E-10 1.5E-14 74.2 7.2 69 155-223 4-80 (84)
78 PF14560 Ubiquitin_2: Ubiquiti 99.1 8.3E-10 1.8E-14 74.4 7.4 70 2-71 3-82 (87)
79 KOG0001 Ubiquitin and ubiquiti 99.1 1.1E-09 2.4E-14 70.9 7.8 72 3-74 2-73 (75)
80 PLN02560 enoyl-CoA reductase 99.0 7E-10 1.5E-14 91.4 7.4 70 1-70 1-81 (308)
81 PF14560 Ubiquitin_2: Ubiquiti 98.9 3.8E-09 8.3E-14 71.2 7.0 69 154-222 3-81 (87)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.8 1.2E-08 2.6E-13 71.4 7.0 74 76-149 2-89 (111)
83 KOG4248 Ubiquitin-like protein 98.8 4.9E-09 1.1E-13 95.7 5.6 75 2-77 4-78 (1143)
84 KOG0001 Ubiquitin and ubiquiti 98.8 3.8E-08 8.2E-13 63.6 8.5 72 156-227 3-74 (75)
85 PLN02560 enoyl-CoA reductase 98.8 1.7E-08 3.7E-13 83.3 7.5 70 77-146 1-81 (308)
86 cd01801 Tsc13_N Ubiquitin-like 98.7 4.1E-08 8.8E-13 64.5 6.1 68 2-69 2-74 (77)
87 PF11543 UN_NPL4: Nuclear pore 98.7 2.5E-08 5.4E-13 65.7 4.5 71 151-222 3-78 (80)
88 KOG4248 Ubiquitin-like protein 98.7 2.7E-08 5.9E-13 90.9 5.5 75 78-153 4-78 (1143)
89 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.8E-07 3.9E-12 65.5 8.4 73 153-225 3-89 (111)
90 KOG4495 RNA polymerase II tran 98.7 4.5E-08 9.7E-13 64.6 4.7 65 1-65 1-68 (110)
91 cd01801 Tsc13_N Ubiquitin-like 98.6 1.1E-07 2.3E-12 62.5 6.4 53 94-146 20-75 (77)
92 PF11543 UN_NPL4: Nuclear pore 98.6 1.9E-07 4.2E-12 61.5 6.1 69 1-70 5-78 (80)
93 KOG1769 Ubiquitin-like protein 98.5 8E-07 1.7E-11 59.6 8.4 77 153-229 21-97 (99)
94 cd01811 OASL_repeat1 2'-5' oli 98.5 5.6E-07 1.2E-11 56.8 7.0 71 77-148 1-76 (80)
95 cd00196 UBQ Ubiquitin-like pro 98.5 5.1E-07 1.1E-11 56.0 6.4 67 5-71 2-68 (69)
96 cd00196 UBQ Ubiquitin-like pro 98.4 1.3E-06 2.8E-11 54.1 6.1 64 160-223 5-68 (69)
97 KOG3493 Ubiquitin-like protein 98.3 2.3E-07 4.9E-12 56.7 1.1 69 78-146 3-71 (73)
98 KOG1769 Ubiquitin-like protein 98.3 6.4E-06 1.4E-10 55.3 8.0 79 75-153 19-97 (99)
99 KOG3493 Ubiquitin-like protein 98.3 2.2E-07 4.7E-12 56.7 0.9 69 155-223 4-72 (73)
100 KOG0006 E3 ubiquitin-protein l 98.3 1.8E-06 4E-11 69.5 6.0 73 1-73 1-77 (446)
101 PF11470 TUG-UBL1: GLUT4 regul 98.0 1E-05 2.2E-10 50.9 4.7 62 160-221 4-65 (65)
102 KOG0006 E3 ubiquitin-protein l 98.0 6E-06 1.3E-10 66.7 4.5 63 87-149 14-77 (446)
103 COG5227 SMT3 Ubiquitin-like pr 98.0 4.7E-06 1E-10 54.5 3.0 77 153-229 25-101 (103)
104 KOG1872 Ubiquitin-specific pro 98.0 1.3E-05 2.7E-10 68.3 5.4 69 3-72 6-75 (473)
105 KOG1872 Ubiquitin-specific pro 97.9 3.1E-05 6.8E-10 65.9 6.1 71 78-149 5-76 (473)
106 PF11470 TUG-UBL1: GLUT4 regul 97.8 9.8E-05 2.1E-09 46.4 6.0 63 83-145 3-65 (65)
107 KOG4495 RNA polymerase II tran 97.7 8.1E-05 1.8E-09 49.4 4.8 55 85-139 10-66 (110)
108 PF08817 YukD: WXG100 protein 97.6 0.00022 4.7E-09 46.9 5.5 68 2-69 4-78 (79)
109 PF08817 YukD: WXG100 protein 97.6 0.00018 3.9E-09 47.4 4.9 67 155-221 5-78 (79)
110 PF00789 UBX: UBX domain; Int 97.4 0.00088 1.9E-08 44.3 7.2 69 153-221 7-80 (82)
111 smart00166 UBX Domain present 97.4 0.00075 1.6E-08 44.5 6.5 69 153-221 5-78 (80)
112 PF13019 Telomere_Sde2: Telome 97.4 0.0011 2.4E-08 49.2 7.8 64 1-64 1-72 (162)
113 smart00166 UBX Domain present 97.3 0.0016 3.5E-08 42.9 7.5 71 75-145 3-78 (80)
114 PF00789 UBX: UBX domain; Int 97.3 0.0019 4.1E-08 42.7 7.7 69 2-70 8-81 (82)
115 cd01772 SAKS1_UBX SAKS1-like U 97.2 0.0021 4.6E-08 42.2 6.9 68 153-221 5-77 (79)
116 PF13019 Telomere_Sde2: Telome 97.2 0.0027 5.9E-08 47.1 7.9 76 77-152 1-88 (162)
117 cd01767 UBX UBX (ubiquitin reg 97.1 0.003 6.6E-08 41.2 7.1 66 153-219 3-73 (77)
118 cd01773 Faf1_like1_UBX Faf1 ik 97.1 0.0034 7.4E-08 41.3 7.0 70 153-223 6-80 (82)
119 cd01771 Faf1_UBX Faf1 UBX doma 97.1 0.0033 7.3E-08 41.4 7.1 69 152-221 4-77 (80)
120 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0039 8.5E-08 40.9 7.1 68 2-70 6-78 (79)
121 COG5227 SMT3 Ubiquitin-like pr 97.0 0.00065 1.4E-08 44.7 2.9 77 75-151 23-99 (103)
122 KOG1639 Steroid reductase requ 97.0 0.0012 2.7E-08 51.8 4.9 70 1-70 1-77 (297)
123 cd01770 p47_UBX p47-like ubiqu 97.0 0.0051 1.1E-07 40.4 7.1 66 76-141 4-73 (79)
124 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0025 5.4E-08 43.5 5.8 49 89-137 14-66 (97)
125 KOG0013 Uncharacterized conser 97.0 0.0014 3E-08 50.2 4.7 63 9-71 155-217 (231)
126 cd01774 Faf1_like2_UBX Faf1 ik 96.9 0.0059 1.3E-07 40.7 7.0 69 152-221 4-82 (85)
127 cd01774 Faf1_like2_UBX Faf1 ik 96.9 0.0081 1.7E-07 40.0 7.6 70 75-145 3-82 (85)
128 cd01767 UBX UBX (ubiquitin reg 96.9 0.006 1.3E-07 39.8 6.9 63 2-65 4-71 (77)
129 cd01770 p47_UBX p47-like ubiqu 96.9 0.0066 1.4E-07 39.8 6.8 64 2-65 6-73 (79)
130 cd01773 Faf1_like1_UBX Faf1 ik 96.8 0.012 2.7E-07 38.7 7.5 70 76-146 5-79 (82)
131 PF14533 USP7_C2: Ubiquitin-sp 96.8 0.013 2.8E-07 46.2 8.9 101 12-114 35-160 (213)
132 PF10302 DUF2407: DUF2407 ubiq 96.7 0.0047 1E-07 42.2 5.5 58 3-60 3-65 (97)
133 cd01771 Faf1_UBX Faf1 UBX doma 96.7 0.016 3.5E-07 38.1 7.7 71 75-146 3-78 (80)
134 PRK06437 hypothetical protein; 96.3 0.044 9.6E-07 34.7 7.6 59 161-228 9-67 (67)
135 COG5417 Uncharacterized small 96.2 0.02 4.4E-07 36.4 5.6 68 78-145 8-80 (81)
136 KOG1639 Steroid reductase requ 96.0 0.017 3.7E-07 45.6 5.5 70 77-146 1-77 (297)
137 COG5417 Uncharacterized small 95.8 0.06 1.3E-06 34.3 6.3 67 155-221 9-80 (81)
138 KOG0013 Uncharacterized conser 95.8 0.019 4.1E-07 44.2 4.7 62 85-146 155-216 (231)
139 KOG3206 Alpha-tubulin folding 95.8 0.047 1E-06 42.0 6.8 72 2-73 3-82 (234)
140 PF14836 Ubiquitin_3: Ubiquiti 95.7 0.084 1.8E-06 35.2 6.9 67 163-230 14-86 (88)
141 KOG3206 Alpha-tubulin folding 95.6 0.039 8.4E-07 42.4 5.6 59 165-223 15-80 (234)
142 PF14533 USP7_C2: Ubiquitin-sp 95.5 0.12 2.7E-06 40.6 8.6 102 87-190 34-160 (213)
143 PF11620 GABP-alpha: GA-bindin 95.3 0.055 1.2E-06 35.5 5.0 60 12-71 4-63 (88)
144 PRK06437 hypothetical protein; 95.3 0.14 3.1E-06 32.3 6.9 62 1-71 1-62 (67)
145 PF09379 FERM_N: FERM N-termin 95.2 0.11 2.5E-06 33.8 6.5 67 157-223 1-76 (80)
146 PF12436 USP7_ICP0_bdg: ICP0-b 95.1 0.14 3.1E-06 41.3 8.1 107 90-196 88-223 (249)
147 PF15044 CLU_N: Mitochondrial 95.0 0.054 1.2E-06 35.2 4.4 57 169-225 1-59 (76)
148 PF10790 DUF2604: Protein of U 95.0 0.11 2.4E-06 32.0 5.3 66 161-226 4-73 (76)
149 PF09379 FERM_N: FERM N-termin 95.0 0.22 4.9E-06 32.3 7.4 58 5-62 1-65 (80)
150 PF11620 GABP-alpha: GA-bindin 94.7 0.16 3.6E-06 33.3 5.9 60 165-224 5-64 (88)
151 cd06407 PB1_NLP A PB1 domain i 94.5 0.19 4.1E-06 33.2 6.1 46 1-47 1-47 (82)
152 cd06406 PB1_P67 A PB1 domain i 94.4 0.22 4.7E-06 32.6 5.9 38 88-125 12-49 (80)
153 PF12436 USP7_ICP0_bdg: ICP0-b 94.4 0.21 4.6E-06 40.3 7.3 106 15-120 89-223 (249)
154 cd01760 RBD Ubiquitin-like dom 94.3 0.2 4.4E-06 32.2 5.6 45 155-199 2-46 (72)
155 cd06409 PB1_MUG70 The MUG70 pr 94.2 0.17 3.6E-06 33.7 5.3 44 79-122 3-49 (86)
156 cd06406 PB1_P67 A PB1 domain i 94.1 0.23 4.9E-06 32.5 5.6 38 164-201 12-49 (80)
157 KOG4583 Membrane-associated ER 94.0 0.034 7.3E-07 45.9 1.9 64 75-138 8-75 (391)
158 PF15044 CLU_N: Mitochondrial 93.9 0.12 2.5E-06 33.6 4.1 57 93-149 1-59 (76)
159 PRK08364 sulfur carrier protei 93.7 0.89 1.9E-05 28.9 7.9 56 164-228 15-70 (70)
160 cd00754 MoaD Ubiquitin domain 93.6 0.28 6E-06 31.9 5.6 60 164-228 17-80 (80)
161 cd06409 PB1_MUG70 The MUG70 pr 93.3 0.39 8.4E-06 31.9 5.8 43 3-45 3-48 (86)
162 smart00455 RBD Raf-like Ras-bi 93.3 0.18 3.9E-06 32.2 4.1 44 156-199 3-46 (70)
163 PF14836 Ubiquitin_3: Ubiquiti 93.2 0.62 1.3E-05 31.1 6.6 64 87-151 14-83 (88)
164 cd00565 ThiS ThiaminS ubiquiti 93.1 0.59 1.3E-05 29.2 6.2 58 166-228 8-65 (65)
165 cd00754 MoaD Ubiquitin domain 93.1 0.27 5.8E-06 31.9 4.8 60 88-152 17-80 (80)
166 PF10790 DUF2604: Protein of U 92.7 0.56 1.2E-05 29.0 5.3 65 84-148 3-71 (76)
167 cd06407 PB1_NLP A PB1 domain i 92.4 0.58 1.3E-05 30.8 5.7 42 84-125 7-49 (82)
168 PRK08364 sulfur carrier protei 92.3 1 2.3E-05 28.6 6.7 66 77-152 5-70 (70)
169 TIGR01683 thiS thiamine biosyn 92.3 0.86 1.9E-05 28.3 6.2 57 167-228 8-64 (64)
170 PRK06488 sulfur carrier protei 92.0 1.2 2.6E-05 27.7 6.6 61 160-228 5-65 (65)
171 smart00666 PB1 PB1 domain. Pho 92.0 0.94 2E-05 29.4 6.4 45 2-47 3-47 (81)
172 PF02196 RBD: Raf-like Ras-bin 91.6 0.62 1.3E-05 29.8 5.0 45 155-199 3-47 (71)
173 smart00666 PB1 PB1 domain. Pho 91.6 1.1 2.5E-05 29.0 6.5 46 78-124 3-48 (81)
174 PRK06488 sulfur carrier protei 91.4 0.94 2E-05 28.2 5.7 60 85-152 6-65 (65)
175 cd01760 RBD Ubiquitin-like dom 91.2 0.84 1.8E-05 29.3 5.2 45 3-47 2-46 (72)
176 KOG2086 Protein tyrosine phosp 91.2 0.54 1.2E-05 39.8 5.5 67 75-141 304-374 (380)
177 KOG4250 TANK binding protein k 90.8 0.78 1.7E-05 42.0 6.5 46 7-52 321-366 (732)
178 KOG4598 Putative ubiquitin-spe 90.8 0.93 2E-05 41.5 6.9 182 12-196 878-1105(1203)
179 PF02597 ThiS: ThiS family; I 90.7 0.94 2E-05 29.0 5.3 63 164-228 13-77 (77)
180 smart00455 RBD Raf-like Ras-bi 90.4 1.1 2.5E-05 28.5 5.4 44 4-47 3-46 (70)
181 PF14453 ThiS-like: ThiS-like 90.3 1.1 2.3E-05 27.4 4.8 53 1-69 1-53 (57)
182 KOG4583 Membrane-associated ER 90.0 0.13 2.9E-06 42.4 1.0 60 153-212 10-73 (391)
183 PLN02799 Molybdopterin synthas 90.0 0.98 2.1E-05 29.5 5.0 61 87-152 19-82 (82)
184 cd06408 PB1_NoxR The PB1 domai 89.7 2.2 4.8E-05 28.3 6.4 52 3-57 3-55 (86)
185 PF12754 Blt1: Cell-cycle cont 89.6 0.1 2.2E-06 42.9 0.0 58 172-229 103-182 (309)
186 PF12754 Blt1: Cell-cycle cont 89.5 0.11 2.3E-06 42.8 0.0 78 76-153 78-182 (309)
187 PRK05659 sulfur carrier protei 89.4 2.3 5E-05 26.4 6.2 61 161-228 6-66 (66)
188 PRK07440 hypothetical protein; 89.3 2.2 4.9E-05 27.1 6.1 61 161-228 10-70 (70)
189 KOG2982 Uncharacterized conser 89.0 0.88 1.9E-05 37.7 4.9 54 169-222 354-415 (418)
190 PRK05863 sulfur carrier protei 89.0 2.2 4.8E-05 26.6 5.8 60 161-228 6-65 (65)
191 PRK06083 sulfur carrier protei 88.9 2.3 5E-05 28.2 6.1 62 160-228 23-84 (84)
192 TIGR01682 moaD molybdopterin c 88.6 2 4.4E-05 27.9 5.7 60 88-152 17-80 (80)
193 cd01818 TIAM1_RBD Ubiquitin do 88.5 1.1 2.5E-05 28.8 4.2 41 156-196 3-43 (77)
194 PF02597 ThiS: ThiS family; I 88.2 0.85 1.8E-05 29.2 3.7 63 88-152 13-77 (77)
195 PLN02799 Molybdopterin synthas 88.2 2 4.3E-05 28.1 5.5 61 163-228 19-82 (82)
196 KOG0012 DNA damage inducible p 88.1 0.85 1.8E-05 38.3 4.3 74 1-74 1-78 (380)
197 KOG0012 DNA damage inducible p 88.0 0.87 1.9E-05 38.2 4.4 65 85-149 11-77 (380)
198 smart00295 B41 Band 4.1 homolo 87.8 4.5 9.8E-05 31.1 8.3 37 2-38 5-41 (207)
199 cd06408 PB1_NoxR The PB1 domai 87.8 3.5 7.7E-05 27.4 6.3 53 77-133 3-55 (86)
200 PRK08053 sulfur carrier protei 87.6 4.4 9.6E-05 25.3 6.6 61 161-228 6-66 (66)
201 TIGR01687 moaD_arch MoaD famil 87.5 2.8 6.2E-05 27.7 6.0 62 87-152 16-88 (88)
202 smart00295 B41 Band 4.1 homolo 87.5 4.7 0.0001 31.0 8.1 73 152-224 3-83 (207)
203 TIGR01682 moaD molybdopterin c 87.2 3.8 8.2E-05 26.6 6.4 60 164-228 17-80 (80)
204 PF02196 RBD: Raf-like Ras-bin 87.2 5 0.00011 25.5 6.7 45 3-47 3-47 (71)
205 cd00565 ThiS ThiaminS ubiquiti 87.1 2 4.3E-05 26.7 4.7 61 85-152 5-65 (65)
206 COG2104 ThiS Sulfur transfer p 86.9 3.9 8.4E-05 25.9 6.0 58 166-228 11-68 (68)
207 PRK07696 sulfur carrier protei 86.9 4 8.7E-05 25.6 6.1 61 161-228 6-67 (67)
208 KOG2086 Protein tyrosine phosp 86.3 1.6 3.6E-05 37.0 5.1 65 2-66 307-375 (380)
209 PRK05863 sulfur carrier protei 86.2 4.9 0.00011 25.0 6.2 60 85-152 6-65 (65)
210 TIGR01687 moaD_arch MoaD famil 86.2 5.6 0.00012 26.2 6.9 61 164-228 17-88 (88)
211 PF00564 PB1: PB1 domain; Int 85.8 4 8.7E-05 26.5 6.0 45 78-123 3-48 (84)
212 TIGR01683 thiS thiamine biosyn 85.0 3.5 7.6E-05 25.5 5.1 61 85-152 4-64 (64)
213 KOG4261 Talin [Cytoskeleton] 84.9 4.5 9.7E-05 37.6 7.4 108 86-196 12-129 (1003)
214 TIGR02958 sec_mycoba_snm4 secr 84.2 3.7 8E-05 36.2 6.6 70 155-225 5-81 (452)
215 PRK11840 bifunctional sulfur c 83.9 4.6 9.9E-05 33.8 6.6 63 161-230 6-68 (326)
216 PRK05659 sulfur carrier protei 83.9 6 0.00013 24.5 5.9 61 85-152 6-66 (66)
217 cd06410 PB1_UP2 Uncharacterize 83.7 4.7 0.0001 27.5 5.6 40 5-45 17-56 (97)
218 cd06411 PB1_p51 The PB1 domain 83.7 2.7 5.9E-05 27.3 4.1 36 88-123 8-43 (78)
219 cd01817 RGS12_RBD Ubiquitin do 83.5 2.8 6.2E-05 26.8 4.1 43 157-199 4-46 (73)
220 PRK08053 sulfur carrier protei 83.3 7.3 0.00016 24.3 6.1 61 85-152 6-66 (66)
221 PF10209 DUF2340: Uncharacteri 82.8 2.5 5.3E-05 30.0 4.0 56 16-71 21-107 (122)
222 PF00564 PB1: PB1 domain; Int 82.6 5.8 0.00013 25.7 5.7 39 9-47 9-48 (84)
223 cd06396 PB1_NBR1 The PB1 domai 82.5 5.9 0.00013 26.0 5.5 37 83-121 6-44 (81)
224 KOG2689 Predicted ubiquitin re 82.5 2.9 6.3E-05 33.8 4.8 69 153-221 211-284 (290)
225 cd05992 PB1 The PB1 domain is 82.3 4.2 9.1E-05 26.2 4.9 39 85-123 8-47 (81)
226 cd06411 PB1_p51 The PB1 domain 82.2 3.4 7.4E-05 26.8 4.2 37 11-47 7-43 (78)
227 PRK06083 sulfur carrier protei 82.0 7.1 0.00015 25.8 5.8 66 77-152 19-84 (84)
228 PF14732 UAE_UbL: Ubiquitin/SU 81.9 6.4 0.00014 26.2 5.6 55 167-221 2-66 (87)
229 cd01817 RGS12_RBD Ubiquitin do 81.7 7.4 0.00016 24.9 5.5 42 6-47 5-46 (73)
230 cd01777 SNX27_RA Ubiquitin dom 81.4 2.7 5.9E-05 27.9 3.6 41 153-193 2-42 (87)
231 cd05992 PB1 The PB1 domain is 81.4 7.2 0.00016 25.1 5.8 44 2-46 2-46 (81)
232 PTZ00380 microtubule-associate 81.3 2 4.3E-05 30.5 3.1 48 11-58 41-88 (121)
233 cd06396 PB1_NBR1 The PB1 domai 80.0 9.6 0.00021 25.0 5.8 34 3-37 3-38 (81)
234 PF08337 Plexin_cytopl: Plexin 80.0 2.7 5.9E-05 37.7 4.2 65 162-226 201-291 (539)
235 PRK07440 hypothetical protein; 79.9 12 0.00026 23.7 6.2 67 76-152 4-70 (70)
236 KOG4250 TANK binding protein k 79.5 5.8 0.00013 36.6 6.2 43 84-126 322-364 (732)
237 PRK06944 sulfur carrier protei 79.4 12 0.00026 23.0 6.2 60 85-152 6-65 (65)
238 KOG2689 Predicted ubiquitin re 79.3 6.9 0.00015 31.8 5.9 71 75-145 209-284 (290)
239 TIGR02958 sec_mycoba_snm4 secr 79.1 10 0.00022 33.6 7.5 71 78-149 4-81 (452)
240 cd01777 SNX27_RA Ubiquitin dom 78.1 4.7 0.0001 26.8 3.9 41 2-42 3-43 (87)
241 PF10209 DUF2340: Uncharacteri 76.3 7.6 0.00016 27.5 4.8 55 93-147 22-107 (122)
242 cd06398 PB1_Joka2 The PB1 doma 75.6 22 0.00047 23.9 7.3 40 84-123 7-52 (91)
243 PTZ00380 microtubule-associate 75.4 5.3 0.00011 28.4 3.8 44 92-135 46-89 (121)
244 PF14451 Ub-Mut7C: Mut7-C ubiq 75.2 10 0.00022 24.9 5.0 53 10-71 22-75 (81)
245 PF14453 ThiS-like: ThiS-like 74.9 11 0.00023 23.0 4.6 46 90-146 9-54 (57)
246 cd06410 PB1_UP2 Uncharacterize 74.4 12 0.00026 25.5 5.3 39 82-121 18-56 (97)
247 KOG2982 Uncharacterized conser 74.3 3.7 8E-05 34.2 3.2 55 92-146 353-415 (418)
248 cd01787 GRB7_RA RA (RAS-associ 74.3 13 0.00028 24.7 5.2 43 3-45 5-47 (85)
249 PRK06944 sulfur carrier protei 74.3 17 0.00038 22.2 6.6 56 167-228 10-65 (65)
250 KOG4572 Predicted DNA-binding 74.1 5.6 0.00012 37.3 4.6 64 161-224 3-70 (1424)
251 cd01818 TIAM1_RBD Ubiquitin do 73.3 12 0.00027 24.1 4.7 40 81-120 4-43 (77)
252 PRK07696 sulfur carrier protei 73.0 20 0.00044 22.4 6.6 61 1-71 1-62 (67)
253 cd01787 GRB7_RA RA (RAS-associ 72.5 15 0.00034 24.3 5.2 59 77-135 3-68 (85)
254 KOG3439 Protein conjugation fa 70.6 33 0.00072 23.9 7.1 59 77-135 31-95 (116)
255 PF14451 Ub-Mut7C: Mut7-C ubiq 70.6 15 0.00033 24.0 4.9 53 86-147 22-75 (81)
256 cd01768 RA RA (Ras-associating 69.9 28 0.0006 22.7 7.3 35 162-196 12-48 (87)
257 cd06398 PB1_Joka2 The PB1 doma 69.6 19 0.00042 24.1 5.4 39 9-47 8-52 (91)
258 PF00276 Ribosomal_L23: Riboso 69.5 10 0.00022 25.5 4.0 39 11-49 21-60 (91)
259 COG2104 ThiS Sulfur transfer p 69.0 26 0.00057 22.1 6.8 57 90-151 11-67 (68)
260 cd01764 Urm1 Urm1-like ubuitin 68.9 7.1 0.00015 26.4 3.2 60 91-152 23-94 (94)
261 PF09469 Cobl: Cordon-bleu ubi 68.7 2.2 4.8E-05 27.5 0.6 35 181-215 2-39 (79)
262 COG5100 NPL4 Nuclear pore prot 68.4 16 0.00036 31.4 5.8 68 155-223 3-78 (571)
263 cd01764 Urm1 Urm1-like ubuitin 68.3 15 0.00034 24.7 4.8 56 168-228 24-94 (94)
264 PF02991 Atg8: Autophagy prote 68.3 13 0.00028 25.7 4.4 42 16-58 38-81 (104)
265 KOG3439 Protein conjugation fa 67.8 17 0.00036 25.3 4.7 55 142-202 30-84 (116)
266 PRK05738 rplW 50S ribosomal pr 67.2 11 0.00024 25.4 3.8 40 10-49 20-60 (92)
267 cd01775 CYR1_RA Ubiquitin doma 67.1 27 0.00059 23.7 5.6 42 79-120 5-47 (97)
268 TIGR03636 L23_arch archaeal ri 66.5 12 0.00027 24.3 3.8 34 10-43 14-47 (77)
269 cd01766 Ufm1 Urm1-like ubiquit 66.3 29 0.00062 22.2 5.2 62 166-227 19-81 (82)
270 PF00788 RA: Ras association ( 65.4 17 0.00037 23.8 4.6 42 155-196 5-52 (93)
271 PF10407 Cytokin_check_N: Cdc1 65.1 34 0.00074 22.0 5.6 66 11-81 3-69 (73)
272 KOG4598 Putative ubiquitin-spe 64.9 13 0.00028 34.5 4.8 96 88-185 878-991 (1203)
273 PRK11130 moaD molybdopterin sy 64.7 27 0.0006 22.6 5.3 52 96-152 25-81 (81)
274 PF11069 DUF2870: Protein of u 64.7 8.4 0.00018 26.1 2.8 29 42-71 3-31 (98)
275 PF03671 Ufm1: Ubiquitin fold 63.6 27 0.00059 22.3 4.7 58 165-222 18-76 (76)
276 PRK14548 50S ribosomal protein 62.8 15 0.00033 24.3 3.8 34 10-43 21-54 (84)
277 PF08337 Plexin_cytopl: Plexin 62.7 12 0.00026 33.8 4.2 65 86-150 201-291 (539)
278 cd01775 CYR1_RA Ubiquitin doma 62.5 25 0.00055 23.8 4.8 42 155-196 5-47 (97)
279 KOG4572 Predicted DNA-binding 62.3 13 0.00029 34.9 4.5 62 85-146 3-68 (1424)
280 PF11069 DUF2870: Protein of u 61.8 13 0.00028 25.2 3.3 30 194-224 3-32 (98)
281 PRK09570 rpoH DNA-directed RNA 61.4 9.1 0.0002 25.0 2.5 51 174-230 19-70 (79)
282 KOG2507 Ubiquitin regulatory p 61.2 12 0.00027 32.3 3.9 77 151-227 313-394 (506)
283 PF08783 DWNN: DWNN domain; I 61.1 20 0.00043 23.1 4.0 36 12-47 11-49 (74)
284 cd01611 GABARAP Ubiquitin doma 61.0 16 0.00035 25.6 3.9 42 16-57 46-88 (112)
285 smart00314 RA Ras association 60.6 34 0.00074 22.5 5.3 30 10-39 15-44 (90)
286 PF00788 RA: Ras association ( 60.5 44 0.00096 21.7 6.0 27 12-38 18-44 (93)
287 COG5100 NPL4 Nuclear pore prot 59.3 34 0.00075 29.5 6.1 70 77-147 1-78 (571)
288 KOG2561 Adaptor protein NUB1, 58.9 10 0.00022 33.1 3.0 58 90-147 53-110 (568)
289 cd06397 PB1_UP1 Uncharacterize 58.8 39 0.00084 22.1 5.0 53 84-136 7-64 (82)
290 cd06397 PB1_UP1 Uncharacterize 58.8 17 0.00038 23.7 3.4 53 160-212 7-64 (82)
291 PRK11840 bifunctional sulfur c 58.6 35 0.00076 28.7 6.0 61 85-152 6-66 (326)
292 cd01768 RA RA (Ras-associating 58.5 48 0.001 21.5 5.9 28 10-37 12-39 (87)
293 KOG4146 Ubiquitin-like protein 57.4 56 0.0012 22.0 7.0 85 143-228 5-101 (101)
294 PRK08453 fliD flagellar cappin 56.8 45 0.00097 31.1 6.9 85 8-93 135-236 (673)
295 PF08825 E2_bind: E2 binding d 55.8 40 0.00087 22.3 4.9 55 15-70 1-69 (84)
296 COG0089 RplW Ribosomal protein 55.6 21 0.00045 24.2 3.5 35 10-44 21-55 (94)
297 PF09138 Urm1: Urm1 (Ubiquitin 55.6 12 0.00026 25.4 2.4 78 145-228 2-96 (96)
298 PF02991 Atg8: Autophagy prote 54.8 62 0.0013 22.3 5.9 56 91-146 37-96 (104)
299 PF09469 Cobl: Cordon-bleu ubi 54.2 14 0.00031 23.9 2.4 35 105-139 2-39 (79)
300 PF00276 Ribosomal_L23: Riboso 53.6 19 0.00042 24.1 3.2 39 87-125 21-60 (91)
301 PF01191 RNA_pol_Rpb5_C: RNA p 53.3 12 0.00025 24.2 1.9 49 175-229 17-66 (74)
302 PF02192 PI3K_p85B: PI3-kinase 52.5 19 0.00041 23.4 2.9 26 13-38 2-28 (78)
303 CHL00030 rpl23 ribosomal prote 52.5 26 0.00056 23.7 3.6 39 9-47 18-57 (93)
304 PF02017 CIDE-N: CIDE-N domain 51.7 56 0.0012 21.3 4.9 38 97-134 21-60 (78)
305 KOG4261 Talin [Cytoskeleton] 51.6 56 0.0012 30.9 6.5 101 10-113 12-121 (1003)
306 KOG2507 Ubiquitin regulatory p 51.2 47 0.001 29.0 5.7 77 74-150 312-393 (506)
307 cd01611 GABARAP Ubiquitin doma 51.1 83 0.0018 22.0 6.4 46 90-135 44-90 (112)
308 smart00144 PI3K_rbd PI3-kinase 51.1 80 0.0017 21.8 7.6 73 77-149 18-105 (108)
309 smart00314 RA Ras association 50.8 64 0.0014 21.1 5.4 36 85-120 14-51 (90)
310 PF03671 Ufm1: Ubiquitin fold 50.5 65 0.0014 20.6 5.0 57 89-145 18-75 (76)
311 PRK01777 hypothetical protein; 49.8 68 0.0015 21.7 5.3 62 1-71 4-75 (95)
312 cd01816 Raf_RBD Ubiquitin doma 49.6 48 0.001 21.3 4.2 43 155-197 2-44 (74)
313 PRK05738 rplW 50S ribosomal pr 49.2 41 0.00089 22.6 4.2 40 86-125 20-60 (92)
314 cd01766 Ufm1 Urm1-like ubiquit 48.7 71 0.0015 20.5 5.2 60 90-149 19-79 (82)
315 smart00266 CAD Domains present 48.5 39 0.00085 21.7 3.8 45 173-219 19-65 (74)
316 KOG1364 Predicted ubiquitin re 48.1 15 0.00033 30.9 2.3 66 154-219 279-350 (356)
317 KOG0007 Splicing factor 3a, su 47.7 7.6 0.00017 32.9 0.6 50 83-132 289-339 (341)
318 PF14847 Ras_bdg_2: Ras-bindin 47.6 57 0.0012 22.6 4.8 36 155-190 3-38 (105)
319 cd05484 retropepsin_like_LTR_2 47.0 23 0.00051 23.3 2.8 43 9-51 8-54 (91)
320 PF02017 CIDE-N: CIDE-N domain 46.8 39 0.00085 22.0 3.6 45 173-219 21-67 (78)
321 PF06234 TmoB: Toluene-4-monoo 45.7 88 0.0019 20.7 5.9 60 165-224 17-84 (85)
322 cd01615 CIDE_N CIDE_N domain, 44.9 47 0.001 21.7 3.7 45 173-219 21-67 (78)
323 PRK12280 rplW 50S ribosomal pr 44.6 37 0.00081 25.4 3.7 40 9-48 21-61 (158)
324 KOG2561 Adaptor protein NUB1, 44.4 15 0.00032 32.2 1.7 56 167-222 54-109 (568)
325 TIGR03636 L23_arch archaeal ri 43.0 38 0.00082 22.0 3.1 34 87-120 15-48 (77)
326 smart00144 PI3K_rbd PI3-kinase 42.9 1.1E+02 0.0024 21.1 7.6 62 11-72 29-104 (108)
327 smart00143 PI3K_p85B PI3-kinas 40.8 33 0.00072 22.3 2.6 23 13-35 2-24 (78)
328 TIGR03028 EpsE polysaccharide 40.6 1.9E+02 0.004 23.1 12.2 144 68-222 70-235 (239)
329 cd01612 APG12_C Ubiquitin-like 40.4 1E+02 0.0022 20.5 5.0 61 164-224 17-81 (87)
330 cd06404 PB1_aPKC PB1 domain is 39.7 82 0.0018 20.8 4.3 32 8-39 7-38 (83)
331 PF00794 PI3K_rbd: PI3-kinase 39.7 1.2E+02 0.0026 20.6 6.3 58 3-60 19-85 (106)
332 PF14847 Ras_bdg_2: Ras-bindin 38.4 1.3E+02 0.0029 20.7 5.7 36 79-114 3-38 (105)
333 PF06234 TmoB: Toluene-4-monoo 37.9 1.2E+02 0.0026 20.1 4.9 59 89-147 17-83 (85)
334 KOG1364 Predicted ubiquitin re 37.7 54 0.0012 27.8 4.0 65 78-142 279-349 (356)
335 PRK14548 50S ribosomal protein 37.1 54 0.0012 21.7 3.2 35 86-120 21-55 (84)
336 cd01776 Rin1_RA Ubiquitin doma 37.1 42 0.0009 22.1 2.6 61 164-224 15-85 (87)
337 cd06539 CIDE_N_A CIDE_N domain 37.1 61 0.0013 21.1 3.3 47 173-221 21-69 (78)
338 PF09269 DUF1967: Domain of un 37.0 20 0.00043 22.7 1.1 17 205-221 46-62 (69)
339 cd05722 Ig1_Neogenin First imm 36.4 63 0.0014 21.2 3.7 22 184-205 22-43 (95)
340 PTZ00191 60S ribosomal protein 35.6 65 0.0014 23.7 3.7 33 10-42 82-114 (145)
341 cd01612 APG12_C Ubiquitin-like 35.2 97 0.0021 20.5 4.3 33 15-47 20-52 (87)
342 TIGR03595 Obg_CgtA_exten Obg f 35.0 24 0.00053 22.2 1.3 18 205-222 46-63 (69)
343 cd01782 AF6_RA_repeat1 Ubiquit 34.8 1.6E+02 0.0034 20.5 5.9 37 1-37 24-62 (112)
344 PF11834 DUF3354: Domain of un 34.6 45 0.00098 21.1 2.5 36 21-57 26-61 (69)
345 PF04110 APG12: Ubiquitin-like 34.0 1.3E+02 0.0028 20.0 4.7 48 144-197 3-50 (87)
346 COG1977 MoaD Molybdopterin con 33.9 56 0.0012 21.4 3.0 55 94-152 25-84 (84)
347 PF02824 TGS: TGS domain; Int 33.5 84 0.0018 19.0 3.5 50 3-56 1-50 (60)
348 cd05874 Ig6_NrCAM Sixth immuno 33.2 80 0.0017 19.9 3.6 21 183-203 5-25 (77)
349 COG0089 RplW Ribosomal protein 33.2 87 0.0019 21.2 3.7 39 85-123 20-59 (94)
350 PF04023 FeoA: FeoA domain; I 32.7 1E+02 0.0022 19.1 4.0 36 130-166 26-61 (74)
351 KOG0007 Splicing factor 3a, su 32.1 25 0.00054 29.8 1.3 49 160-208 290-339 (341)
352 PF04126 Cyclophil_like: Cyclo 32.0 41 0.00088 23.8 2.2 29 1-30 1-29 (120)
353 KOG3391 Transcriptional co-rep 31.8 40 0.00087 24.4 2.0 27 124-150 112-138 (151)
354 PF11816 DUF3337: Domain of un 31.7 1.1E+02 0.0024 25.8 5.1 63 165-227 250-330 (331)
355 cd05762 Ig8_MLCK Eighth immuno 31.7 52 0.0011 22.0 2.6 19 187-205 26-44 (98)
356 PHA02090 hypothetical protein 31.6 7.3 0.00016 24.0 -1.4 39 6-44 33-71 (79)
357 PF02505 MCR_D: Methyl-coenzym 30.8 1E+02 0.0022 22.8 4.1 45 12-60 76-121 (153)
358 CHL00030 rpl23 ribosomal prote 30.6 90 0.0019 21.1 3.5 39 86-124 19-58 (93)
359 PLN02593 adrenodoxin-like ferr 30.2 1.1E+02 0.0024 21.5 4.2 34 1-38 1-34 (117)
360 cd05748 Ig_Titin_like Immunogl 30.2 58 0.0013 20.1 2.5 20 185-204 8-27 (74)
361 PF07933 DUF1681: Protein of u 30.2 2.3E+02 0.005 21.3 5.9 93 54-147 64-158 (160)
362 PRK08453 fliD flagellar cappin 29.8 2E+02 0.0042 27.1 6.6 86 84-169 135-236 (673)
363 cd02413 40S_S3_KH K homology R 29.4 1.6E+02 0.0036 19.1 4.8 27 18-44 47-73 (81)
364 PF00794 PI3K_rbd: PI3-kinase 29.1 1.4E+02 0.003 20.3 4.4 72 76-147 16-101 (106)
365 cd05736 Ig2_Follistatin_like S 29.1 1.2E+02 0.0025 18.8 3.9 22 183-204 5-26 (76)
366 cd01666 TGS_DRG_C TGS_DRG_C: 28.9 1.3E+02 0.0028 19.3 4.0 34 1-34 2-38 (75)
367 PF08756 YfkB: YfkB-like domai 28.7 93 0.002 22.7 3.5 82 20-103 12-100 (153)
368 cd06536 CIDE_N_ICAD CIDE_N dom 28.4 94 0.002 20.3 3.2 46 173-220 21-70 (80)
369 KOG4147 Uncharacterized conser 28.2 42 0.00092 23.2 1.6 21 50-70 90-111 (127)
370 PF08299 Bac_DnaA_C: Bacterial 27.8 26 0.00056 22.1 0.5 19 22-40 1-19 (70)
371 PF01376 Enterotoxin_b: Heat-l 26.6 89 0.0019 20.4 2.8 31 3-33 38-68 (102)
372 PF03931 Skp1_POZ: Skp1 family 26.5 84 0.0018 19.1 2.7 26 1-26 1-29 (62)
373 PF02505 MCR_D: Methyl-coenzym 25.5 2.8E+02 0.0062 20.6 6.9 109 13-135 6-120 (153)
374 KOG2660 Locus-specific chromos 25.4 51 0.0011 27.7 1.9 48 164-211 165-214 (331)
375 KOG3391 Transcriptional co-rep 25.4 81 0.0017 22.9 2.7 28 198-225 110-137 (151)
376 PF11305 DUF3107: Protein of u 25.0 1.6E+02 0.0035 19.0 3.8 36 1-37 1-36 (74)
377 KOG3073 Protein required for 1 24.9 71 0.0015 24.9 2.5 76 112-188 156-235 (236)
378 cd05867 Ig4_L1-CAM_like Fourth 24.2 42 0.0009 21.0 1.0 19 186-204 11-29 (76)
379 PF06622 SepQ: SepQ protein; 24.0 3.4E+02 0.0074 21.9 6.1 50 95-146 139-190 (305)
380 cd07693 Ig1_Robo First immunog 23.7 1.5E+02 0.0033 19.0 3.9 19 186-204 26-44 (100)
381 cd05852 Ig5_Contactin-1 Fifth 23.6 70 0.0015 20.0 2.0 20 185-204 10-29 (73)
382 smart00760 Bac_DnaA_C Bacteria 23.5 45 0.00098 20.1 1.0 19 22-40 1-19 (60)
383 cd06538 CIDE_N_FSP27 CIDE_N do 23.4 1.5E+02 0.0033 19.3 3.5 44 173-219 21-66 (79)
384 cd01816 Raf_RBD Ubiquitin doma 23.3 2.2E+02 0.0047 18.4 4.8 42 79-120 2-43 (74)
385 PF10787 YfmQ: Uncharacterised 23.3 1.4E+02 0.003 21.9 3.5 77 92-168 20-109 (149)
386 PF07971 Glyco_hydro_92: Glyco 23.1 1.3E+02 0.0029 27.1 4.2 58 2-73 443-500 (502)
387 TIGR00038 efp translation elon 23.1 1.3E+02 0.0028 23.0 3.7 20 75-94 106-125 (184)
388 COG2012 RPB5 DNA-directed RNA 22.9 71 0.0015 20.8 1.8 49 175-229 23-72 (80)
389 cd05733 Ig6_L1-CAM_like Sixth 22.7 1.5E+02 0.0032 18.5 3.5 22 183-204 5-26 (77)
390 KOG3483 Uncharacterized conser 22.2 2.3E+02 0.005 18.3 4.4 60 169-228 33-93 (94)
391 KOG2660 Locus-specific chromos 22.0 86 0.0019 26.4 2.6 47 90-136 167-215 (331)
392 PRK12280 rplW 50S ribosomal pr 20.9 1.7E+02 0.0037 21.9 3.8 39 87-125 23-62 (158)
393 cd05747 Ig5_Titin_like M5, fif 20.8 1.3E+02 0.0028 19.5 2.9 17 187-203 29-45 (92)
394 PF00550 PP-binding: Phosphopa 20.5 1.2E+02 0.0027 18.1 2.7 37 25-70 2-38 (67)
395 PRK00529 elongation factor P; 20.5 2E+02 0.0042 22.1 4.2 20 75-94 107-126 (186)
396 PTZ00490 Ferredoxin superfamil 20.4 1.7E+02 0.0036 21.5 3.6 30 73-102 32-61 (143)
397 cd05749 Ig2_Tyro3_like Second 20.3 1.7E+02 0.0037 18.8 3.4 20 185-204 22-42 (81)
398 cd05864 Ig2_VEGFR-2 Second imm 20.2 1.6E+02 0.0036 18.2 3.2 22 184-205 6-27 (70)
399 cd05848 Ig1_Contactin-5 First 20.1 1E+02 0.0022 20.3 2.3 18 187-204 30-47 (94)
400 PRK11872 antC anthranilate dio 20.0 5.3E+02 0.011 21.6 8.0 27 2-28 4-30 (340)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=1.8e-20 Score=129.82 Aligned_cols=97 Identities=43% Similarity=0.627 Sum_probs=91.2
Q ss_pred ccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhc
Q 026973 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~ 135 (230)
...+++.+-+++|+.+++.+.|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc
Confidence 34566777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEEEEEecc
Q 026973 136 NIQKESTLHLVLRLRGG 152 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~ 152 (230)
+|.++++|++.+++++|
T Consensus 87 ~I~~~stL~l~~~l~GG 103 (103)
T cd01802 87 NISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCCEEEEEEecCCC
Confidence 99999999999988765
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.84 E-value=9.4e-21 Score=124.23 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=3.9e-20 Score=128.10 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=90.6
Q ss_pred hcccccCCceEEEEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccC
Q 026973 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i 213 (230)
-+++.+-+++++.+++.++|.|+++...|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 35566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeccCC
Q 026973 214 QKESTLHLVLRLRGG 228 (230)
Q Consensus 214 ~~~~~i~l~~~~~~g 228 (230)
++|++|+++.+++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999997
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.81 E-value=1.1e-19 Score=119.83 Aligned_cols=74 Identities=49% Similarity=0.785 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.++..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.81 E-value=1.3e-19 Score=118.72 Aligned_cols=73 Identities=40% Similarity=0.596 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+||+. ++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+++.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 79999999999999999999999999999999999999999999999999999999999988653
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.80 E-value=1.2e-19 Score=119.67 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.3
Q ss_pred CEEEEEccCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|++ +.++ +.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 899999999997 7895 89999999999999999999999999999999999999999999999999999998743
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.79 E-value=2.5e-19 Score=116.30 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+++.|+.+.+++++++||++||++|++..|+|+++|+|.|.|+.|+|+.+|++|||.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.78 E-value=1.1e-18 Score=115.22 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 9
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.77 E-value=1.4e-18 Score=114.58 Aligned_cols=74 Identities=54% Similarity=0.931 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.77 E-value=8.6e-19 Score=114.86 Aligned_cols=72 Identities=31% Similarity=0.575 Sum_probs=69.4
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+++.|+++++++++++||++||++|+...|+|+++|+|+|+|+.|.|+.+|++|||.+++++++..+..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999988753
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.77 E-value=1.2e-18 Score=115.03 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=71.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++..|+.+++++++++||++||++|++..|+|+++|+|.|.|+.|+|+ +|++|||.++++++++.....+
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999 9999999999999998876443
No 12
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.76 E-value=2.4e-18 Score=113.80 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|++..|+ |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988754
No 13
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.76 E-value=1.4e-18 Score=112.03 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.9
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+.++|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999975
No 14
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=2.5e-18 Score=112.67 Aligned_cols=74 Identities=41% Similarity=0.621 Sum_probs=69.5
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.|+|+. ++++.+++++++||+++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|+++++|+++.|++||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4577775 4789999999999999999999999999999999999999999999999999999999999999998
No 15
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=1.9e-18 Score=113.26 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.4
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999874
No 16
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.76 E-value=3.2e-18 Score=111.72 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=69.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+||.++|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++|+..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999875
No 17
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.75 E-value=3.1e-18 Score=111.03 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeee
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|++..|+++.+++++++||.+||++|++..|+|+.+|+|+|+|+.|+|+.+|++|||.+++++|+..+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999753
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=4.7e-18 Score=111.34 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.5
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|+|++..|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++..++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999887
No 19
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=6e-18 Score=111.58 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.6
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.|+|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++..+++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999987
No 20
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.74 E-value=1.2e-17 Score=110.32 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.3
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.|+|+|+...|+.+.+++++++||++||++|++..++|+++|+|+|.|+.|+|+ +|++||+.+|++|+++..+.+|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 478999999999999999999999999999999999999999999999999998 99999999999999999888774
No 21
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.74 E-value=1.2e-17 Score=110.18 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.2
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.|.|+..+|+++.++++++.||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|+++.+.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999987
No 22
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=1.1e-17 Score=110.22 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=70.6
Q ss_pred eeeEEEeccCee-Eeee-cCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 77 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~-~~i~-v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|++.+|+. +.++ +++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||.++++|++++++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 789999999987 6885 89999999999999999999999999999999999999999999999999999988754
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.73 E-value=1.1e-17 Score=110.28 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+++|++|+++.|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999997
No 24
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=1e-17 Score=111.38 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=70.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeE--EecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l--~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|++..|+|+++|+| .|+|+.|.|+.+|++||+.+++++++.++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 789999999999999999999999998763
No 25
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.72 E-value=1.9e-17 Score=107.49 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=67.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
|.|+|++..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 26
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.8e-19 Score=117.03 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=72.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+++++++.|++.++++.|++||..+|.+|++..|||++.|+|.|+|+.|+|..|+++|||...+++|+..++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999886443
No 27
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.6e-18 Score=100.06 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|++++|+.+.+++.|.++|..+|+.|+...||||.+|||.|.|+++.|+.+-++|++..+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999974
No 28
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.71 E-value=3.3e-17 Score=105.97 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.5
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+++|+.+++++++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|||.++++|++..++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999998765
No 29
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.70 E-value=4.2e-17 Score=105.97 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++..|+ ..+++++++||.+||++|++..|+|+.+|+|.|+|+.|.|+.+|++||+.+++++|+.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 599999999999999999999999999999999999999999999999999999999763
No 30
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.6e-18 Score=120.71 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=73.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.|||+++.|++.++++.+++||..+|.+||+..|||+++|+|+|.|++|+|..+|++|+|...+++|+++++.++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987543
No 31
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=3.8e-17 Score=105.38 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=65.9
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEE
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.|+..+|+++.+++++++||+++|++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++|++.+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 357888999999999999999999999999999999999999999999999999999999999999975
No 32
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.70 E-value=3.7e-17 Score=106.02 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.5
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCC-ccccccccccccceeee
Q 026973 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~~l~~~~i~~~~~i~l~ 70 (230)
|+|++. +|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ .+|++|||.+++++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 33
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.69 E-value=1.3e-16 Score=105.48 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=69.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC--CCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i--p~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+.+|++++++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 689999999999999999999999999999999999 9999999999999999999999999999999988764
No 34
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.69 E-value=7.5e-17 Score=104.53 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.8
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
|+|+..+|+.+.+++++++||+++|++|++..|+|+++|+|+|+|++|+|+.+|++|+|+++++++++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5788999999999999999999999999999999999999999999999999999999999999998753
No 35
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=2.4e-16 Score=104.71 Aligned_cols=74 Identities=31% Similarity=0.415 Sum_probs=70.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEE--EEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L--~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+| .|+|+.|.|+.+|++||+.+|++++++++..
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999999999999 7899999999999999999999999998753
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.66 E-value=2.5e-16 Score=102.70 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=68.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|+++++..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 67899999999999999999999999999999999999999999999999999999999999999998875
No 37
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.66 E-value=2.5e-16 Score=102.41 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999998863
No 38
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.66 E-value=1.9e-16 Score=104.18 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=64.7
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
++|+++++++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++.++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999987643
No 39
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.66 E-value=2.7e-16 Score=101.68 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.3
Q ss_pred EeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEecc
Q 026973 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 158 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~ 226 (230)
++.+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|.+|||++|++|+++.|++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 356789999999999999999999999999999999999999999999999999999999999998864
No 40
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=4.5e-16 Score=102.40 Aligned_cols=70 Identities=33% Similarity=0.675 Sum_probs=66.7
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.+|+++.+++++++||.+||++|+..+|+|++.|+|+|+|+.|+|+.+|++|++++|++|+++.+.+||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 3688999999999999999999999999999999999999999999999999999999999999998873
No 41
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.64 E-value=5.8e-16 Score=101.00 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.5
Q ss_pred CEEEEEccCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCCeeEEecCccccCCccccccc--cccccceeeee
Q 026973 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~~l~~~~--i~~~~~i~l~~ 71 (230)
|.++||+.+|+. |++++++++||++||++|++..+ .|+++|+|.|.|+.|.|+.+|++|. +.++.++||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 55555899999999999999875 4579999999999999999999996 99999999974
No 42
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.62 E-value=1.1e-15 Score=99.29 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=65.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
+.|+|+..+|+ ..+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|+++++.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 35888888886 589999999999999999999999999999999999999999999999999999998763
No 43
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.62 E-value=2.3e-15 Score=101.51 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=74.2
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
-+.|.|+..+|+...+++.+++|+..||++++++.|+|++.++|+|+|+.|+++.|+.+|++++||+|+++.+++||
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 46788898999999999999999999999999999999999999999999999999999999999999999999998
No 44
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.61 E-value=1.4e-15 Score=98.61 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.3
Q ss_pred eEEEec-cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCC-ccHhhcccccCCceEEE
Q 026973 79 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 146 (230)
Q Consensus 79 v~v~~~-~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 146 (230)
++|+.. +|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+ .+|++||+++|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467888 899999999999999999999999999999999999999999887 68999999999998774
No 45
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.61 E-value=2.1e-15 Score=98.38 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe---cCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~---~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.||. +|+++++++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|++.+++.++++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 6788876 5899999999999999999999999999999999996 8999999999999999999998875
No 46
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.59 E-value=5.3e-15 Score=96.50 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=63.9
Q ss_pred CeeeEEEeccCee--EeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCccHhhcc--cccCCceEEEE
Q 026973 76 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (230)
Q Consensus 76 ~~~v~v~~~~g~~--~~i~v~~~~tV~~lK~~i~~~~~--ip~~~q~L~~~g~~L~d~~tL~~~~--i~~~~~i~l~~ 147 (230)
.+.++|++++++. +.+++++++||++||++|++..+ .|+++|+|+|.|+.|.|+.+|++|. +.++.+||++.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3689999999988 55566899999999999999885 5579999999999999999999996 99999999874
No 47
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-15 Score=90.43 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=66.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
|.|.+++++|+.+.++++++++|..+|++++++.||||.+|+|+|.|+.+.|+.+-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999873
No 48
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.9e-16 Score=105.90 Aligned_cols=76 Identities=97% Similarity=1.310 Sum_probs=72.8
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.++++...|+++.+++++++||..+|.+|....|+||+.|+|+|+|+.|+|+.||++|+|+.-|+|+++.|++||-
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 4677888999999999999999999999999999999999999999999999999999999999999999999983
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.58 E-value=6.7e-15 Score=95.64 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=64.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
++|.|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|.|+.+|++||+.+|++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46788875 8889999999999999999999999999999999999999999999999999999999876
No 50
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.58 E-value=5.9e-15 Score=93.82 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCcccccccccccc
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~ 65 (230)
|+|+|+..+ +++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|.|+.+|++||+.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998764
No 51
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.57 E-value=1.8e-14 Score=97.17 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=75.1
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|+|++.+|+.+.+++.+++|+..||.+++++.|+|++.++|+|+|+.|+++.|+++|++.+|++|++++++.+|
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999988775
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.57 E-value=8.3e-15 Score=95.53 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=63.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE---cCcccCCCccHhhcccccCCceEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~---~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
+.|.|+ ++|+.+.+++++++||++||++|++.+++|+++|+|+| .|+.+.|+.+|++|++.+|+.|.++
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 356665 67888999999999999999999999999999999996 8999999999999999999999876
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.54 E-value=1.2e-14 Score=94.76 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.4
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCcccc-CCccccccccc-cccceeeee
Q 026973 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~~l~~~~i~-~~~~i~l~~ 71 (230)
...|.++.+++++++||++||++|+..+|||+++|+| |+|+.|. |+.+|++||+. ++++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4568999999999999999999999999999999999 9998885 67999999999 779998864
No 54
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.3e-14 Score=104.41 Aligned_cols=77 Identities=95% Similarity=1.310 Sum_probs=73.6
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
|.|+|+...+++...++++++||..+|.+|++..|||+++|+|+|.|+.|+|..+|+||+|+..++++++++++||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 45788888899999999999999999999999999999999999999999999999999999999999999999996
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=4.1e-14 Score=119.07 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+||++.|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|.++++|++++.-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999988754
No 56
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.49 E-value=4.9e-14 Score=93.73 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=58.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCC-ccccccccccccceeeeeee
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~ 73 (230)
...+++|++++||++||.+|.+.+++||.+|+|.++|+.|.|+ +||++||+.++++++|.+..
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 3567899999999999999999999999999999999999875 99999999999999998753
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.46 E-value=1.6e-13 Score=87.08 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=60.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCC
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~ 141 (230)
|+|+|+..+ +.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++||+.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578898888 6889999999999999999999999999999999999999999999999999875
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.42 E-value=4.6e-13 Score=87.36 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.1
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccC-CCccHhhcccc-cCCceEEEE
Q 026973 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 147 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~-d~~tL~~~~i~-~~~~i~l~~ 147 (230)
...|.++.+++++++||++||++|++++|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4567889999999999999999999999999999999 9999885 77899999998 789998764
No 59
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.42 E-value=1.7e-13 Score=88.10 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHhhhhh--CCC-CCCeeEEecCccccCCccccccccccccceeeee
Q 026973 19 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~--gip-~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.++||.+||++|++.. |+| +++|+|.|.|+.|+|+.+|++|||.+++++||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3579999999999996 575 9999999999999999999999999999999974
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.40 E-value=2.9e-13 Score=87.09 Aligned_cols=54 Identities=31% Similarity=0.553 Sum_probs=49.3
Q ss_pred ccchHHHHHHHhcccc--CCC-CCceEEEEcCeecCCCCccccccCCCCCEEEEEEe
Q 026973 171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 171 ~~~tV~~lK~~i~~~~--gi~-~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.++||.+||++|+++. |++ +++|+|+|.|+.|+|+++|++|||++|++|+++.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4789999999999996 475 88999999999999999999999999999998753
No 61
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=6.3e-13 Score=111.92 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=70.4
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|+++++|.+++...
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 68999999999999999999999999999999998 999999999999999999999999999999999887653
No 62
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.38 E-value=1.5e-12 Score=83.83 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.3
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+..+|+.+.+++++++||.+||++|+...|+|+++|+|.|+|+.|+|+.+|.+|++.+++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999988753
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=1.6e-12 Score=89.25 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=64.7
Q ss_pred CCeeeEEEeccCeeE-eeecCCCChHHHHHHHHHhHh-----C--CCCCCcEEEEcCcccCCCccHhhcc------cccC
Q 026973 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----G--IPPDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~-~i~v~~~~tV~~lK~~i~~~~-----~--ip~~~q~L~~~g~~L~d~~tL~~~~------i~~~ 140 (230)
..+.|.++..+|..+ +..+++++||++||++|++.+ + .+++.|+|+|.|+.|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 356788888888554 788999999999999999666 3 4499999999999999999999999 6666
Q ss_pred CceEEEEEEe
Q 026973 141 STLHLVLRLR 150 (230)
Q Consensus 141 ~~i~l~~~~~ 150 (230)
.|+|+++++.
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 8888888765
No 64
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=9.8e-13 Score=90.31 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=63.4
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhh-----hhhCCC--CCCeeEEecCccccCCccccccc------cccccce
Q 026973 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~-----~~~gip--~~~q~l~~~g~~L~d~~~l~~~~------i~~~~~i 67 (230)
.|.++..+|. .=+..+++++||++||++|+ +..|+| +++|+|+|+|+.|+|++||++|+ +....|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 5777788884 55788999999999999999 445566 99999999999999999999999 7777899
Q ss_pred eeeeeec
Q 026973 68 HLVLRLR 74 (230)
Q Consensus 68 ~l~~~~~ 74 (230)
|++++++
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9998874
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.32 E-value=6.1e-12 Score=80.98 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=62.3
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEE
Q 026973 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+..+|+.+.+.+++++||++||++|+..+++|+++|+|.|+|+.|+|+.+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5566788999999999999999999999999999999999999999999999999999999998763
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.30 E-value=7e-12 Score=81.57 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CCeeEEecCccccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+..+|+.+.+.|.+++++..|+++..+..|+|+ +..+|+|+|+.|+++.|++++|+.++++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999998753
No 67
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.29 E-value=7.3e-12 Score=83.42 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=56.0
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccC-CCccHhhcccccCCceEEEEE
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~i~l~~~ 148 (230)
...++|++++||.+||.+|.+.+++||..|+|+++|+.|. |.+||++||+.+++++.+.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 3578899999999999999999999999999999999985 577999999999999988864
No 68
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.27 E-value=7.4e-12 Score=100.83 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+||++.|.+|++++.|++||.++|.+|+...| .|+++|+|+|+|+.|.|+.++.+|++..++-+.+.+.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999877776543
No 69
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.27 E-value=2.1e-11 Score=79.29 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEEcCcccCCCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~-~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+|.|+..+|+.+.+.+.+++++..|++.+++..++|+ +.++|.|+|+.|+++.|++++|+.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 57889999999999999999999999999999999999 999999999999999999999999999998863
No 70
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.27 E-value=1.3e-11 Score=84.37 Aligned_cols=72 Identities=31% Similarity=0.462 Sum_probs=63.3
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccc-------cccceeeeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~-------~~~~i~l~~~ 72 (230)
|.||++....+ +++++..++.||.|||++|+.....||+.|+|+..++.|+|++||++||+. ..+++-|..+
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999988666 789999999999999999999999999999999777899999999999994 3555666555
No 71
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.25 E-value=8.7e-12 Score=105.53 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
++|+||+.+. .+.+.|..+.||.+||++|.+.+++|+++|+|+|.|+.|.|+.||..|||.++.|+||+++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 5799999876 899999999999999999999999999999999999999999999999999999999998753
No 72
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.25 E-value=1.3e-11 Score=104.54 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.3
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
.++|+||+.++ ++.+.|..+.||.+||+.|..++++|+++++|+|.|+.|+|+.||..|||.+|.||||+++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47899998888 789999999999999999999999999999999999999999999999999999999998764
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.17 E-value=1.4e-10 Score=77.54 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=58.2
Q ss_pred EEEEEccC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecCc-----cc-cCCccccccccccccceeeee
Q 026973 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~-----~L-~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+... ....+..+++++||.+||++++..+|+||+.|+|. |.|+ .| +|..+|+.||+.++.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46666543 34555669999999999999999999999999995 7776 35 567999999999999999864
No 74
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.17 E-value=9.5e-11 Score=80.10 Aligned_cols=71 Identities=30% Similarity=0.419 Sum_probs=64.3
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccC-------CCCCEEEEEEeccCCCC
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGQF 230 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i-------~~~~~i~l~~~~~~g~~ 230 (230)
++..++.+.++++.||.+||++|+.-...||++|+|+..+.+|+|++||++||+ +..+++-+.+|...|.|
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 344578889999999999999999999999999999977789999999999999 77999999999887876
No 75
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.15 E-value=7.7e-11 Score=95.04 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|.|+||++.++.|.+++.+++||.++|++|+...| +|+..|+|+|+|+.|.|+.++.+|++.+++.|-+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 67999999999999999999999999999999999 999999999999999999999999999999998888765
No 76
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.13 E-value=3.6e-10 Score=71.02 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=65.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEec--C---ccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--G---KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g---~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
++|+|+..++..+.+.|+|..+|.++|++|....|++- .|+|.|+ | +.|.+..+|++|||.++..|-++...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999998 9999996 2 56888999999999999888877544
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.06 E-value=6.8e-10 Score=74.18 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=56.4
Q ss_pred eEEEeec-cceEEEEeeccchHHHHHHHhccccCCCCCceEEE-EcCe-----ec-CCCCccccccCCCCCEEEEEE
Q 026973 155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~-~~g~-----~l-~d~~~L~~~~i~~~~~i~l~~ 223 (230)
+.+.+.. .......++++.||.+||++++..+|+|++.|+|. |.+. .| +|.++|.+||+++|++|+++-
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 3444433 23455668999999999999999999999999995 7776 45 788999999999999999764
No 78
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.06 E-value=8.3e-10 Score=74.44 Aligned_cols=70 Identities=27% Similarity=0.544 Sum_probs=57.1
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEec-C------ccc-cCCccccccccccccceeeee
Q 026973 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g------~~L-~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|....- ......+++++||.+||.+++..+|+|++.|+|.+. . ..+ +|..+|.+||+.++.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567776654 488999999999999999999999999999999976 1 223 567999999999999988863
No 79
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=70.91 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=68.0
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
+++++..|+++.+++.++.+|..+|.+|+...|+|+..|++.+.|+.|.|+.++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577889999999999999999999999999999999999999999999999999999999999999987653
No 80
>PLN02560 enoyl-CoA reductase
Probab=99.03 E-value=7e-10 Score=91.42 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=63.0
Q ss_pred CEEEEEccCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCCeeEEec---C----ccccCCccccccccccccceee
Q 026973 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+..+|+.+ ++++++++||+|||++|++..++ ++++|+|.+. | ..|.|+.+|+++|+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999986 89999999999999999999987 8999999983 3 3789999999999999998776
Q ss_pred e
Q 026973 70 V 70 (230)
Q Consensus 70 ~ 70 (230)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.94 E-value=3.8e-09 Score=71.18 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=54.7
Q ss_pred eeEEEeecc--ceEEEEeeccchHHHHHHHhccccCCCCCceEEEEc----C---eec-CCCCccccccCCCCCEEEEE
Q 026973 154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~----g---~~l-~d~~~L~~~~i~~~~~i~l~ 222 (230)
.+.+..... ......++.+.||.+||++++..+|+|++.|+|.+. + ..+ +|..+|.+||+++|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 344554443 478888999999999999999999999999999854 1 223 67899999999999999875
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.85 E-value=1.2e-08 Score=71.42 Aligned_cols=74 Identities=30% Similarity=0.498 Sum_probs=55.9
Q ss_pred CeeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhC-------CCCCCcEEEEcCcccCCCccHhhcccccCC------
Q 026973 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (230)
Q Consensus 76 ~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~-------ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~------ 141 (230)
.+.|.++..+|. ..++.+++++||++||+.|...+. ..++.++|+|.|+.|+|+.+|+++++..|+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 456777778898 789999999999999999998773 235678999999999999999999988766
Q ss_pred ceEEEEEE
Q 026973 142 TLHLVLRL 149 (230)
Q Consensus 142 ~i~l~~~~ 149 (230)
++|+++++
T Consensus 82 vmHlvvrp 89 (111)
T PF13881_consen 82 VMHLVVRP 89 (111)
T ss_dssp EEEEEE-S
T ss_pred EEEEEecC
Confidence 45555554
No 83
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.9e-09 Score=95.66 Aligned_cols=75 Identities=33% Similarity=0.569 Sum_probs=71.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCe
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (230)
.|+||+++.++.++.|+..+||.++|..|....+|+.+.||++|+|+.|.|++++.+|++ +|-+|||+.++++..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~ 78 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQT 78 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCc
Confidence 489999999999999999999999999999999999999999999999999999999999 999999999876543
No 84
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.82 E-value=3.8e-08 Score=63.55 Aligned_cols=72 Identities=83% Similarity=1.142 Sum_probs=66.6
Q ss_pred EEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccC
Q 026973 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 156 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~ 227 (230)
.+....|+...+++.+..++..+|.+|+...|+|++.|++.+.|+.+.|+.++.+|+|..++++++..+.++
T Consensus 3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 455577899999999999999999999999999999999999999999999999999999999999888764
No 85
>PLN02560 enoyl-CoA reductase
Probab=98.79 E-value=1.7e-08 Score=83.28 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=60.5
Q ss_pred eeeEEEeccCeeE---eeecCCCChHHHHHHHHHhHhCC-CCCCcEEEEc---C----cccCCCccHhhcccccCCceEE
Q 026973 77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g~~~---~i~v~~~~tV~~lK~~i~~~~~i-p~~~q~L~~~---g----~~L~d~~tL~~~~i~~~~~i~l 145 (230)
|.|.|+..+|+.+ .+++++++||++||++|++..++ ++++|+|.+. | ..|.|+.+|+++|+.+|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 5678887778776 79999999999999999999986 8999999973 3 3788999999999999998766
Q ss_pred E
Q 026973 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 86
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.72 E-value=4.1e-08 Score=64.54 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=53.7
Q ss_pred EEEEEccC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCCeeEE--ecCccccCCccccccccccccceee
Q 026973 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d~~~l~~~~i~~~~~i~l 69 (230)
.|.++..+ .....+++ ++++||.+||..|....+ +++++|+|. +.|+.|.|+.+|++||+.+++++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45555554 33333444 588999999999999876 589999997 6789999999999999999998765
No 87
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.69 E-value=2.5e-08 Score=65.72 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=43.1
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEc--C-eec--CCCCccccccCCCCCEEEEE
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--G-KQL--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~--g-~~l--~d~~~L~~~~i~~~~~i~l~ 222 (230)
..|-|.+++.+| .+.+++++++|+.+|+++|.+..++|.+.|.|..+ + ..+ .++++|+++|+++||.|++.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 345677777765 66789999999999999999999999999988632 2 344 57899999999999999863
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.7e-08 Score=90.90 Aligned_cols=75 Identities=33% Similarity=0.569 Sum_probs=71.1
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.|+||+++.++.++.+...+||.+||..|.+..+|+.+.||++|.|+.|.|++++++|++ +|-+|||+-|+.++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~ 78 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQT 78 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCc
Confidence 488999999999999999999999999999999999999999999999999999999999 999999999876554
No 89
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.67 E-value=1.8e-07 Score=65.52 Aligned_cols=73 Identities=30% Similarity=0.510 Sum_probs=54.6
Q ss_pred eeeEEEeeccc-eEEEEeeccchHHHHHHHhccccC-------CCCCceEEEEcCeecCCCCccccccCCCCC------E
Q 026973 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 218 (230)
Q Consensus 153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~g-------i~~~~q~l~~~g~~l~d~~~L~~~~i~~~~------~ 218 (230)
+.+.....+|+ ..++.+++++||.+||+.|...|. ..++.++|+|.|+.|+|+.+|+++++..|+ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34555566787 788999999999999999998872 134678999999999999999999998766 5
Q ss_pred EEEEEec
Q 026973 219 LHLVLRL 225 (230)
Q Consensus 219 i~l~~~~ 225 (230)
+|++.|.
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 7777764
No 90
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.65 E-value=4.5e-08 Score=64.63 Aligned_cols=65 Identities=29% Similarity=0.448 Sum_probs=56.5
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cC-ccccCCcccccccccccc
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g-~~L~d~~~l~~~~i~~~~ 65 (230)
|.+|++....+ ++.++..++.||.|||++++....-|++.|+|+. .. +.|+|.++|+++|+.+..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ 68 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQT 68 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccc
Confidence 67788776554 7899999999999999999999999999999997 43 789999999999987544
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.64 E-value=1.1e-07 Score=62.55 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHHHhHhC-CCCCCcEEE--EcCcccCCCccHhhcccccCCceEEE
Q 026973 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 94 ~~~~tV~~lK~~i~~~~~-ip~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++-
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEe
Confidence 578899999999999986 689999996 78999999999999999999988763
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.58 E-value=1.9e-07 Score=61.49 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=42.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC---ccc--cCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~~L--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|-|.|++.+| ++.+++++++|+.+|+++|++.+++|.+.|.|+.+. ..+ +++.+|+++||..|+-++|.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5567777654 677899999999999999999999999999987542 344 46799999999999998874
No 93
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8e-07 Score=59.63 Aligned_cols=77 Identities=17% Similarity=0.431 Sum_probs=69.8
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+.+.|....+....+.+..+++...|++..|++.|++.+..+++|+|+.+.+.+|-++.++++||.|.++.-+.||.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 34455555677889999999999999999999999999999999999999999999999999999999999998886
No 94
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.54 E-value=5.6e-07 Score=56.78 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=61.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC-----cccCCCccHhhcccccCCceEEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g-----~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
++|+|+..++..+.+.|+|..+|..+|++|....+++- .|+|.|.- +.|.+..+|++|||..+..|.++-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 47889988989999999999999999999999999887 89998742 5678999999999998877766643
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.50 E-value=5.1e-07 Score=56.00 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=60.4
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+..+|....+.+.+++|+.++|+++....|+++..|.|+++|..+.+...+..+++..++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788999999999999999999999999999999999999999998888899999999988753
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.38 E-value=1.3e-06 Score=54.09 Aligned_cols=64 Identities=45% Similarity=0.670 Sum_probs=58.1
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEE
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
.+++...+.+.+..|+.++++.++.++|.+++.+.|+++|..+.+...+.++++.+++.|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3677888888899999999999999999999999999999999988888899999999998764
No 97
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.3e-07 Score=56.66 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=61.3
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+.+...-|++..+.+++++||+++|..|+..+|-.++...|.-++....|+-+|++|.|.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456666779999999999999999999999999999999988877888999999999999998877654
No 98
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.4e-06 Score=55.35 Aligned_cols=79 Identities=16% Similarity=0.428 Sum_probs=72.1
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..+.+.|+..++....+.+..+++...|+...+++.|++.+..++.|+|+.+....|.++.+..+|+.|.++....+|.
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4567777777778889999999999999999999999999999999999999999999999999999999998877764
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.2e-07 Score=56.74 Aligned_cols=69 Identities=26% Similarity=0.390 Sum_probs=60.3
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEE
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
+.++..-|+...+.+++++||.++|+.|+..+|..++...|-..+...+|..+|++|.|.+|..+.+.+
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 344555688999999999999999999999999999998887777788999999999999999887653
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.8e-06 Score=69.54 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=64.6
Q ss_pred CEEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee-eee
Q 026973 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~-~~~ 73 (230)
|.|+|... .-..++++|+.+.+|.+||+.|+...|+|+++.+.+|.|++|+++.++..+.+...+.+|++ ++|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 67777655 23478999999999999999999999999999999999999999999999999999998876 444
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.04 E-value=1e-05 Score=50.88 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.1
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEE
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l 221 (230)
.+++...+.+.+++++.++-++.++++|+.++.+.|.|+++.++-+.+++-.|+.+|+++.+
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 56889999999999999999999999999999999999999999999999999999999864
No 102
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6e-06 Score=66.66 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=57.1
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE-EEE
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~-~~~ 149 (230)
..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++++++.+.+...+.++++ +|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 457899999999999999999999999999999999999999999999998888888877 443
No 103
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.7e-06 Score=54.52 Aligned_cols=77 Identities=17% Similarity=0.379 Sum_probs=69.9
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+.+.+...++.+..+.+..+.+...|.+..+++.|-..+..|++|+|+..+.++|..+++.++|+.|.++..+.|||
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 44555556788899999999999999999999999999999999999999999999999999999999888888886
No 104
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.3e-05 Score=68.31 Aligned_cols=69 Identities=25% Similarity=0.443 Sum_probs=62.9
Q ss_pred EEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeee
Q 026973 3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|| ..|+.++++ ++.++|+..+|.++...+|+||++|++.+.|..+.|+..+....|+++.++++.-.
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 4443 468999988 99999999999999999999999999999999999999999999999999999753
No 105
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.1e-05 Score=65.94 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=64.0
Q ss_pred eeEEEeccCeeEeee-cCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 78 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~-v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.|.|+ +.|+.+.++ ++.++|+..||+++...+|+||++|++.+.|..+.|+-.+...+|++|.++.++-..
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 45565 678888888 999999999999999999999999999999999999989999999999999888654
No 106
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.80 E-value=9.8e-05 Score=46.43 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.9
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEE
Q 026973 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
..+++...+.+.+++++.++-+....++++.++...|.|+++.++-+.+++-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467889999999999999999999999999999999999999999999999999999998764
No 107
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.71 E-value=8.1e-05 Score=49.42 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=47.5
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cC-cccCCCccHhhccccc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK 139 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g-~~L~d~~tL~~~~i~~ 139 (230)
+..++-++.+++.||-+||.+++....-|++.|+|.- .. +.|+|.++|+++|...
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 3445778899999999999999999999999999984 33 6789999999998754
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.58 E-value=0.00022 Score=46.95 Aligned_cols=68 Identities=22% Similarity=0.408 Sum_probs=48.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCe------eEE-ecCccccCCccccccccccccceee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ------RLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q------~l~-~~g~~L~d~~~l~~~~i~~~~~i~l 69 (230)
+|+|..-+|+.+.+.++.+.+|.+|...+.+..+.+.... .|. -+|..|+++.+|+++|+.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5666665578999999999999999999999988755432 333 4588999999999999999999876
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.56 E-value=0.00018 Score=47.37 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=47.2
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCC---C---ceEEE-EcCeecCCCCccccccCCCCCEEEE
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~---~---~q~l~-~~g~~l~d~~~L~~~~i~~~~~i~l 221 (230)
+.+...+++.+.+.++.+.+|.+|...+.+..+.+. . .+.|. -+|..|+++.+|+++||.+|+.+.+
T Consensus 5 Vtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 5 VTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 445544468899999999999999999999877532 2 35555 5788999999999999999999976
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.45 E-value=0.00088 Score=44.31 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=57.8
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCc-eEEE--EcCeecCC--CCccccccCCCCCEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLED--GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~l~--~~g~~l~d--~~~L~~~~i~~~~~i~l 221 (230)
..|.++.++|+...-.+..++|+.+|..-|......+... +.|+ |..+.+.+ +++|.+.|+.++++|.+
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 5678888999999999999999999999999887666654 8886 66677743 37999999999999975
No 111
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.42 E-value=0.00075 Score=44.47 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=57.2
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCccccccCCCCCEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~~L~~~~i~~~~~i~l 221 (230)
..|.++.++|+.+...++.++|++++.+-|....+.....+.|+ |..+.+.+ +++|.+.|+.+++++.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 46788889999999999999999999999966666666778887 66677743 57999999999988864
No 112
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.41 E-value=0.0011 Score=49.17 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=50.2
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCCe-eEEec-Cccc--cCCccccccccccc
Q 026973 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q-~l~~~-g~~L--~d~~~l~~~~i~~~ 64 (230)
|+|+|.+++| .++.+.++++.||.+|+..|....++|+..| .|++. ++.| .++..++.+.-.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 7899999999 6999999999999999999999999999885 45553 4555 34455555544333
No 113
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.35 E-value=0.0016 Score=42.87 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccCC---CccHhhcccccCCceEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l 145 (230)
+..+|.|+.++|..+.-.++.++|+.++.+-+....+.+.....|. |..+.+.+ +.||.+.|+.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3457888999999999999999999999999976666666677776 66677753 57999999988887754
No 114
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.33 E-value=0.0019 Score=42.69 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=57.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEE--ecCccccCC--ccccccccccccceeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~--~~g~~L~d~--~~l~~~~i~~~~~i~l~ 70 (230)
+|.|+..+|..+.-...+++||.+|...|......+... -.|. |..+.+.+. .+|++.|+.+++++++.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 588999999999999999999999999999998877764 4554 556777654 69999999999988763
No 115
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.21 E-value=0.0021 Score=42.23 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=56.1
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCccccccCCCCCEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~~L~~~~i~~~~~i~l 221 (230)
..|.++.++|+...-..+.++|++++.+-|....+-. ..+.|+ |..+.+.+ ++||.+.|+.+.+++.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4578888999999999999999999999998775433 567777 77788743 58999999999999865
No 116
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.20 E-value=0.0027 Score=47.12 Aligned_cols=76 Identities=30% Similarity=0.533 Sum_probs=56.4
Q ss_pred eeeEEEeccC----eeEeeecCCCChHHHHHHHHHhHhCCCCCCc-EEEE-cCccc--CCCccHhhcccccCC----ceE
Q 026973 77 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKES----TLH 144 (230)
Q Consensus 77 ~~v~v~~~~g----~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q-~L~~-~g~~L--~d~~tL~~~~i~~~~----~i~ 144 (230)
|+|+|.+.+| .++.+.+++++||.+|+..|....++|+..+ .|.+ .++.+ .++..++++.-.+.+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5788999999 5789999999999999999999999998884 4554 34454 455666766544433 566
Q ss_pred EEEEEecc
Q 026973 145 LVLRLRGG 152 (230)
Q Consensus 145 l~~~~~~~ 152 (230)
+.+++.||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 66676665
No 117
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.15 E-value=0.003 Score=41.22 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=52.5
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCccccccCCCCCEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~~L~~~~i~~~~~i 219 (230)
..|.++.++|+......+.++|++++.+-|.....- ...+.|+ |..+.+. .+.||.+.|+.++..+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 357888999999999999999999999999877533 5667777 6667764 5899999999954433
No 118
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.12 E-value=0.0034 Score=41.34 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=59.9
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCccccccCCCCCEEEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~~L~~~~i~~~~~i~l~~ 223 (230)
-.|.++.++|+...-....+++++.|..-|.. .|.+++.+.|+ |-.+++ +.+.||.+.|+.+.+++.+--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 46788999999999999999999999999998 47888999998 766766 345899999999999997743
No 119
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.12 E-value=0.0033 Score=41.35 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=58.7
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCccccccCCCCCEEEE
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~~L~~~~i~~~~~i~l 221 (230)
...|.++.++|+...-....+++++.|..-|... |.+++.+.|+ |..+++ +.+.||.+.|+.+..++.+
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 3567888899999999999999999999999876 7788899998 777766 3457999999999999876
No 120
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.08 E-value=0.0039 Score=40.93 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=54.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCccccC---Cccccccccccccceeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~~l~~~~i~~~~~i~l~ 70 (230)
+|.|+..+|....-..+.++|+.+|.+.|....+-+. .-.|. |.-+.+.+ +.||.+.|+.+.+++.+.
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~-~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGG-PFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCC-CEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 5789999999999999999999999999997765443 23444 66677753 589999999998887763
No 121
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00065 Score=44.66 Aligned_cols=77 Identities=16% Similarity=0.341 Sum_probs=66.9
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
..+.+.|...++..+-+.+..+++...|....+.+.|-..+..|+.|+|+.++.++|..+++..+++.|..+....+
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG 99 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG 99 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence 35667777778888999999999999999999999999999999999999999999999999999998766544333
No 122
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.02 E-value=0.0012 Score=51.83 Aligned_cols=70 Identities=27% Similarity=0.391 Sum_probs=54.8
Q ss_pred CEEEEEccCCc-EE-EEEecCCCcHHHHHHHh-hhhhCCCCCCeeEEe----cCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGK-TI-TLEVESSDTIDNVKAKI-QDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~-~~~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~----~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|++...+++ .. ..+.+..+|+.|++.++ ++...+.+.++|+.+ .|+.|-|+.+|++|+..+++++.+.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 88999988763 33 36778889999999555 555778887777664 4899999999999999999776653
No 123
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.01 E-value=0.0051 Score=40.41 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=53.1
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--EcCcccCC-CccHhhcccccCC
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-p~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~ 141 (230)
..+|.|+..+|+.+.-.++.++||++|.+-|....+- ......|. |..+.+.| +.||.+.|+.+..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 4578899999999999999999999999999987643 23456676 67787754 7799999998643
No 124
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.00 E-value=0.0025 Score=43.54 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=39.3
Q ss_pred EeeecC--CCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCccHhhccc
Q 026973 89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI 137 (230)
Q Consensus 89 ~~i~v~--~~~tV~~lK~~i~~~~~--ip~~~q~L~~~g~~L~d~~tL~~~~i 137 (230)
..++++ .+.||..||+.|.+..+ ..-.+++|+|+|+.|.|...|+..-.
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 556665 78899999999999984 44457899999999999888876543
No 125
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.0014 Score=50.24 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=57.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.++.+.+.+...+|+.++|.+++...|+.+..|+++|+|..+.|...|..++|..+.+..+.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 467888999999999999999999999999999999999999999999999999997765544
No 126
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.93 E-value=0.0059 Score=40.68 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=56.3
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeecC--------CCCccccccCCCCCEEEE
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL 221 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~--------d~~~L~~~~i~~~~~i~l 221 (230)
...|.++.++|+...-....++|+++|..-|... +..++.+.|+ |..+.+. .+.||.+.|+.+..++.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 3567888899999999999999999999999754 5567889998 4446764 467999999999888865
No 127
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.92 E-value=0.0081 Score=40.02 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=56.0
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC--------CCccHhhcccccCCceE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~--------d~~tL~~~~i~~~~~i~ 144 (230)
+..+|.++.++|+.+.-.++.++||.+|..-|.. .+..+....|+ |..+.+. .+.||++.|+.+.+++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4567889999999999999999999999999965 45566778887 4446775 36799999999877765
Q ss_pred E
Q 026973 145 L 145 (230)
Q Consensus 145 l 145 (230)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 128
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.91 E-value=0.006 Score=39.80 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=49.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCccccC---Ccccccccccccc
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKES 65 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~~l~~~~i~~~~ 65 (230)
+|.|+..+|+.+.-..+.++||.+|.+.|.....-+. .-.|. |..+.+.+ +.||.+.|+.+.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~-~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAE-PFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCC-CEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 5789999999999999999999999999988765433 33444 55677754 7999999999433
No 129
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.87 E-value=0.0066 Score=39.84 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=51.0
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCCeeEE--ecCccccC-Ccccccccccccc
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKES 65 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip-~~~q~l~--~~g~~L~d-~~~l~~~~i~~~~ 65 (230)
+|-|+..+|+.+...++.++||.+|.+.|....+-+ .....|. |..+.+.| +.||.+.|+.+..
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 578999999999999999999999999999876432 2334454 67787776 5899999998543
No 130
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.78 E-value=0.012 Score=38.69 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=59.0
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCccHhhcccccCCceEEE
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~ 146 (230)
.-+|.|+.++|+...-.+..++++.+|-.-+.. .|.++....|+ |..+.+. .+.||.+.|+.+.+++.|-
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 457888999999999999999999999999988 57888888888 6666663 3579999999999888764
No 131
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.77 E-value=0.013 Score=46.18 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=56.2
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCC---CeeEE--ecC---ccccCCccccccccccccceeeeeeec---------
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLR--------- 74 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~---~q~l~--~~g---~~L~d~~~l~~~~i~~~~~i~l~~~~~--------- 74 (230)
.+.+-|+.+.||.||-.++....+++.+ ..+++ +++ +.++.+..+.+. .+...+.+-.-+.
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 5889999999999999999999999876 34444 344 345666666655 2222222221111
Q ss_pred -CCeeeEEEec-------cCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026973 75 -GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 75 -~~~~v~v~~~-------~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~ 114 (230)
+...|.|... .|-.|.+.|.+++|.+++|++|++++|++-
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233444322 366788899999999999999999999874
No 132
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.75 E-value=0.0047 Score=42.19 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=43.9
Q ss_pred EEEEccCC-cEEEEEec--CCCcHHHHHHHhhhhhC--CCCCCeeEEecCccccCCccccccc
Q 026973 3 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 60 (230)
Q Consensus 3 v~v~~~~g-~~~~~~v~--~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~~l~~~~ 60 (230)
|+|+.-++ .-+.++++ ...||..||+.|.+..+ ..-.+++|+|+|+.|.|+..|+..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 44554442 34677777 88999999999999983 4445688899999999988877543
No 133
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.71 E-value=0.016 Score=38.10 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=58.4
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCccHhhcccccCCceEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~ 146 (230)
+..+|.++.++|+...-.+..++++.+|-.-+... |.++...+|+ |.-+.+. .+.||.+.|+.+.+++.|-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 34678889999999988999999999999999875 7777788887 6667774 3579999999988877653
No 134
>PRK06437 hypothetical protein; Provisional
Probab=96.31 E-value=0.044 Score=34.67 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=47.0
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.++...+++++..|+.+|-+.+ |+++....+..+|.... .++-+++||.|.++.-..||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 5567888888888998887554 78888888889999886 66788999999877666665
No 135
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.24 E-value=0.02 Score=36.36 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=54.8
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC--CC---CCcEEEEcCcccCCCccHhhcccccCCceEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i--p~---~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.+-++..+|.++.+.++...++..|-..+.+...+ +. ...+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45556778999999999999999999888877664 22 2346667889999999999999999997754
No 136
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.04 E-value=0.017 Score=45.61 Aligned_cols=70 Identities=29% Similarity=0.386 Sum_probs=49.5
Q ss_pred eeeEEEeccC-eeEe-eecCCCChHHHHHHHHHhHh-CCCCCCcEEE----EcCcccCCCccHhhcccccCCceEEE
Q 026973 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g-~~~~-i~v~~~~tV~~lK~~i~~~~-~ip~~~q~L~----~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
|.|++.+.++ .... ...+..+|+.+++..+.++. .+.+.++++. -+|+.+-|+.+|++|+..+|+++.+.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 4566655544 2333 56777889999997776654 5666554443 46899999999999999999777653
No 137
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.83 E-value=0.06 Score=34.28 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccC--CCC-C--ceEEEEcCeecCCCCccccccCCCCCEEEE
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPP-D--QQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--i~~-~--~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l 221 (230)
+-.+..+|.++.+.++..-++..|-..+.+... +++ + ..+..-+++.|.++..|.+|+|.+||.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 334456689999999999898888777766543 333 2 345567889999999999999999998865
No 138
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.019 Score=44.16 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=55.9
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.++.+.+.+...+|+.++|..+++..++.+..|+++++|..+-|...|..|+|..|....+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 46678888999999999999999999999999999999999999999999999998755443
No 139
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.047 Score=41.95 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=55.6
Q ss_pred EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecC-----ccccC-Cccccccccccccceeeeeee
Q 026973 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g-----~~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|.|.+..-+ .+.-.++++.||.++|.+++-..|.+++...|. |.| ..|+| +..|..|+..++-+||+.-..
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 4566544322 355678999999999999999999999999988 554 34554 588999999999898887543
No 140
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=95.67 E-value=0.084 Score=35.17 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=46.1
Q ss_pred ceEEEEeeccchHHHHHHHhccccCCCCCceEEE-Ec---C-eec-CCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA---G-KQL-EDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~-~~---g-~~l-~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
..++..++..+||..+.+.+++.+.+ +...||- +. + ..| +...|+.+.|+.+|.+|.+=-|...|.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 35677889999999999999999999 6667774 22 2 345 5668999999999999988888888876
No 141
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.039 Score=42.41 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=49.6
Q ss_pred EEEEeeccchHHHHHHHhccccCCCCCceEEE-EcC-----eec-CCCCccccccCCCCCEEEEEE
Q 026973 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~-~~g-----~~l-~d~~~L~~~~i~~~~~i~l~~ 223 (230)
...+.+.+.|+++||.+++..+|.+++.+.|. |+| ..| +++..|..|...+|-.||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 34556788999999999999999999999887 665 345 577899999999999998764
No 142
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=95.50 E-value=0.12 Score=40.65 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=56.0
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCC---CcEEE--EcCc---ccCCCccHhhcccccCCceEEEEEEe--------
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR-------- 150 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~---~q~L~--~~g~---~L~d~~tL~~~~i~~~~~i~l~~~~~-------- 150 (230)
+.+.+-++.+.||++|...++++.+++.+ ..++. ++++ .+..+.++.+. .+...+++-.-+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788899999999999999999998765 44554 4553 45667777776 2222232221111
Q ss_pred --cceeeEEEe-------eccceEEEEeeccchHHHHHHHhccccCCCC
Q 026973 151 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 151 --~~~~i~v~~-------~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 190 (230)
+..-|.|.. ..|-.+.+.+.+..|+.+.|+.|.+++|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 112233322 2355678889999999999999999999874
No 143
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=95.33 E-value=0.055 Score=35.46 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=43.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.+...++-.+++..||..++.+.+++.+.-.++++...|+++++|.+.++.....+.+.+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEE
Confidence 445677888999999999999999999999999999779999999999999998887764
No 144
>PRK06437 hypothetical protein; Provisional
Probab=95.31 E-value=0.14 Score=32.34 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=49.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.-+++..+++...+++..+.||.+|=+ ..|+++..-.+..||..+. .++-+++++++.++.
T Consensus 1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 1 MIAMIRVKGHINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CcceEEecCCcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 4556767677889999999999999887 5689888887778998887 566677888887764
No 145
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.19 E-value=0.11 Score=33.75 Aligned_cols=67 Identities=25% Similarity=0.318 Sum_probs=50.1
Q ss_pred EEeeccceEEEEeeccchHHHHHHHhccccCCCCCc-eEEEE----cC--eecCCCCccccccCC--CCCEEEEEE
Q 026973 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVL 223 (230)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~l~~----~g--~~l~d~~~L~~~~i~--~~~~i~l~~ 223 (230)
|+..+|....+++++++|+.+|-++|+++.++.... +-|.+ +| .=|+.+++|.++... ...++++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 456789999999999999999999999999986544 45556 22 346888999999887 333444443
No 146
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.12 E-value=0.14 Score=41.28 Aligned_cols=107 Identities=17% Similarity=0.347 Sum_probs=72.6
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC------cccCCCccHhhcccccCCceEEEEEEec------------
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 151 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g------~~L~d~~tL~~~~i~~~~~i~l~~~~~~------------ 151 (230)
.+-|+.+++|+++-..|.+..|+|++..-++|.- ..++...++....+.+|+.|.+-.....
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 4567889999999999999999999876666542 3467889999999999998877765431
Q ss_pred --------ceeeEEEeec---cceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 152 --------GMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 152 --------~~~i~v~~~~---g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
.+.+.++... +..+.+.++..+|-.+|-++|.++.+++|+..+|.
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1344444322 34789999999999999999999999999999987
No 147
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.02 E-value=0.054 Score=35.21 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=47.9
Q ss_pred eeccchHHHHHHHhccccC-CCCCceEEEEcCeecCCCCccccc-cCCCCCEEEEEEec
Q 026973 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 225 (230)
Q Consensus 169 v~~~~tV~~lK~~i~~~~g-i~~~~q~l~~~g~~l~d~~~L~~~-~i~~~~~i~l~~~~ 225 (230)
|+++++|.++++.+..... .....+.|.++|..|++...|++. |+++|..+.++.+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 4678899999999988764 456788899999999999999888 58999999988664
No 148
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=94.98 E-value=0.11 Score=32.01 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=50.5
Q ss_pred ccceEEEEeeccchHHHHHHHhcccc---CCCCCceEEE-EcCeecCCCCccccccCCCCCEEEEEEecc
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~---gi~~~~q~l~-~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~ 226 (230)
+|+...++.+......-..++--+.. |-|++++.|- -.|.+++-++...+||+.+|-++++.+|..
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 56667777776665555554444443 5789999887 688999999999999999999998887753
No 149
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.96 E-value=0.22 Score=32.32 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=45.7
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEe--c--C--ccccCCccccccccc
Q 026973 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--A--G--KQLEDGRTLADYNIQ 62 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~--~--g--~~L~d~~~l~~~~i~ 62 (230)
|..++|...++++++++|+.++=+.|.+..|+...+ --|.+ . | .=|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 567899999999999999999999999999987543 55667 1 2 226778888888766
No 150
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.73 E-value=0.16 Score=33.29 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.0
Q ss_pred EEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe
Q 026973 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
+...++-..++..||+.++.+.++..+.+.++..+..|+++++|-+.|++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 445566677899999999999999999999988887799999999999998888877653
No 151
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=94.51 E-value=0.19 Score=33.17 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CCeeEEecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 47 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~~g 47 (230)
|+|.+ +.+|..+.+.+.++.+..+|+++|.+++++.. ..-.|.|..
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 45555 44789999999999999999999999999875 455566643
No 152
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.37 E-value=0.22 Score=32.57 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~ 125 (230)
++.|.++++.+..+|..+|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999997643
No 153
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.37 E-value=0.21 Score=40.28 Aligned_cols=106 Identities=17% Similarity=0.357 Sum_probs=74.7
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC------ccccCCccccccccccccceeeeeeec--------------
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLR-------------- 74 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g------~~L~d~~~l~~~~i~~~~~i~l~~~~~-------------- 74 (230)
+-|+..++|.++-..|.+..|.|++...++|.- ..++...++....+.+|+-|-......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 578999999999999999999999888877752 557788999999999999877765432
Q ss_pred ------CCeeeEEEec---cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 75 ------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 75 ------~~~~v~v~~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
..+.|.++.. .+..+.+.++...|-.+|-++|+++.+++|...+|.
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 2356666642 345789999999999999999999999999999987
No 154
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=94.28 E-value=0.2 Score=32.15 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.1
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g 199 (230)
+.|..++|+...+.+.+..|+.++-+.++++.|+.++...+...|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 457789999999999999999999999999999999988887544
No 155
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.24 E-value=0.17 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=37.9
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC---CCcEEEEc
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA 122 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~---~~q~L~~~ 122 (230)
..++.+.|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|-
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 467788999999999999999999999999999886 46666664
No 156
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.10 E-value=0.23 Score=32.47 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.8
Q ss_pred eEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCee
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 201 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~ 201 (230)
++.+.+.+..+..+|+++|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88899999999999999999999999999999987654
No 157
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.034 Score=45.86 Aligned_cols=64 Identities=22% Similarity=0.354 Sum_probs=49.7
Q ss_pred CCeeeEEEeccCe--eEeeecCCCChHHHHHHHHHhHhCC-C-CCCcEEEEcCcccCCCccHhhcccc
Q 026973 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGI-P-PDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 75 ~~~~v~v~~~~g~--~~~i~v~~~~tV~~lK~~i~~~~~i-p-~~~q~L~~~g~~L~d~~tL~~~~i~ 138 (230)
..+.+.++..+.+ ...|..+...||++||..++..+.- | +..|||+|.|+.|.|...|.+.=++
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 3456777777654 4567777788999999999998752 2 3479999999999999999887554
No 158
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.95 E-value=0.12 Score=33.64 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=44.8
Q ss_pred cCCCChHHHHHHHHHhHhC-CCCCCcEEEEcCcccCCCccHhhcc-cccCCceEEEEEE
Q 026973 93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRL 149 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~-ip~~~q~L~~~g~~L~d~~tL~~~~-i~~~~~i~l~~~~ 149 (230)
|+++++|.++++.+..... ..-....|.++|+.|++...|++.. +.+|+++.++..+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5678999999999988755 4455678889999999988888874 7778877776443
No 159
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.70 E-value=0.89 Score=28.89 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=42.8
Q ss_pred eEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...+++++..|+.+|-+.+ ++++....+..+|.... .+.-+++||.|.++.-..||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence 5667778888999988766 56677677778998874 36678999999877666665
No 160
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.64 E-value=0.28 Score=31.86 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=44.7
Q ss_pred eEEEEeeccchHHHHHHHhccccCC----CCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi----~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...+++++..|+.+|.+.+...++- ......+..+|+... .+.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3566777788999999999887642 234456667888765 45679999999988777776
No 161
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=93.34 E-value=0.39 Score=31.94 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=36.7
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---CeeEEe
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~---~q~l~~ 45 (230)
..++...|+++-+.+.|++.+.+|++.|.+++|+... .-.|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4677889999999999999999999999999999873 444444
No 162
>smart00455 RBD Raf-like Ras-binding domain.
Probab=93.31 E-value=0.18 Score=32.21 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred EEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC
Q 026973 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 156 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g 199 (230)
.+..++|+...+.+.+..|+.++-+.++++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 56678999999999999999999999999999999988888754
No 163
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=93.19 E-value=0.62 Score=31.08 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=42.9
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-c---C-ccc-CCCccHhhcccccCCceEEEEEEec
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-A---G-KQL-EDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~---g-~~L-~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
..+...++..+||+.+...+.+.+.| ....||-- . + ..| +.+.|+.+.|+.+|-+|.+-.+...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 35677889999999999999999999 66677752 2 2 235 3467999999999987766655443
No 164
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.06 E-value=0.59 Score=29.15 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=43.0
Q ss_pred EEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+++++..|+.+|.+.+. +++....+..+|+.... ....+.-+++||.|.++.-..||
T Consensus 8 ~~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEELG----LDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 344556778998887764 66777777789987744 34667789999999887777766
No 165
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.05 E-value=0.27 Score=31.92 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=43.9
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCC----CCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i----p~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...++++...||.+|.+.+...++- ......+..||+... .+.-+++|+.|.++....||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4567788889999999999988642 233456667887776 35568899999888665554
No 166
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=92.66 E-value=0.56 Score=28.99 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=49.1
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEE-EcCcccCCCccHhhcccccCCceEEEEE
Q 026973 84 LTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~---ip~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+|+...++.+.+....-..++--+..+ -|++.-.|. -+|..++-++.+.|||+.++-++.+.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 3577788888887766666555545443 678777777 6788899899999999999987776654
No 167
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=92.44 E-value=0.58 Score=30.85 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=35.2
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEEcCcc
Q 026973 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 125 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~-~~q~L~~~g~~ 125 (230)
.+|..+.+.++++.+..+|++.|.+++++.. ....|.|...+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5778899999999999999999999999865 56777776543
No 168
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.34 E-value=1 Score=28.58 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=45.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+|.+.... ....++++.+.||.+|-+.+ ++++....+..||..... +.-+++|+.|.+.....||
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 455553221 24577888889999988765 677767677788888743 5568889998887554443
No 169
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=92.33 E-value=0.86 Score=28.33 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=41.5
Q ss_pred EEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+++++..|+.+|.+.+ ++++....+..+|..... ....++-+++||.|.++.-..||
T Consensus 8 ~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 8 VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 3445667899888765 466677777789987743 34677889999999887766666
No 170
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=92.01 E-value=1.2 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=43.8
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+|+.+.+ + ..|+.+|.+.+ ++++....+-.+++... .....+.-+++||.|.++.=..||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 35666665 3 35899888765 56666566668998775 345778889999999877766666
No 171
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.97 E-value=0.94 Score=29.44 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=37.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
.|.+.. +|.++.+.++++.|..+|+.+|.+.++.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 345544 678999999999999999999999999987777777763
No 172
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=91.63 E-value=0.62 Score=29.79 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=36.9
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g 199 (230)
+.+..++|+...+.+.+..|+.+.-..++++.|+.++...+...|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 567789999999999999999999999999999999988776433
No 173
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.61 E-value=1.1 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=37.9
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~ 124 (230)
.+.++. ++..+.+.++++.|..+|+.+|.+.++.+.....|.|...
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 344543 6778899999999999999999999998877888888753
No 174
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.44 E-value=0.94 Score=28.23 Aligned_cols=60 Identities=15% Similarity=0.317 Sum_probs=41.3
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+. .....+.-+++|+.|.++....||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 5666665 3 35899988764 66665556668887765 334556778999999888665544
No 175
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=91.16 E-value=0.84 Score=29.28 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.0
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+.|-..+|..-.+.+.|++||.|+=+++.++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 356577899999999999999999999999999999988888654
No 176
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.16 E-value=0.54 Score=39.81 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC-CCCCCcEEE--EcCcccCC-CccHhhcccccCC
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLED-GRTLADYNIQKES 141 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~-ip~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~ 141 (230)
+.-.|.|+..+|......++.+.||.+++..|..... -+...+.|+ |..++|.| +.||++.|+.+..
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 4567888889999999999999999999999998876 444466666 77888865 7799999998754
No 177
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=90.83 E-value=0.78 Score=41.97 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=40.2
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccC
Q 026973 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d 52 (230)
+.++..+.+-++++.|+..+++.|+..+|||...|.|+|.|.....
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~ 366 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHL 366 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcccc
Confidence 3457789999999999999999999999999999999998755443
No 178
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=0.93 Score=41.48 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=98.0
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--e--cCccc--cCCccccccccccccceeeee--ee-cCCeeeEEE
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVL--RL-RGGMQIFVK 82 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~--~g~~L--~d~~~l~~~~i~~~~~i~l~~--~~-~~~~~v~v~ 82 (230)
.+-+.|+.-++++.+|+.|++..++|.+.-+++ + ||..+ .++.+|+.. .++.+|.+.+ .+ +++..+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 567889999999999999999999999987776 2 23333 345667653 3344433322 11 233333333
Q ss_pred ec----cC--ee---EeeecCCCChHHHHHHHHHhHhC--------CCCCCcEEEE-----cCccc-CCCccHhhccccc
Q 026973 83 TL----TG--KT---ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-----AGKQL-EDGRTLADYNIQK 139 (230)
Q Consensus 83 ~~----~g--~~---~~i~v~~~~tV~~lK~~i~~~~~--------ip~~~q~L~~-----~g~~L-~d~~tL~~~~i~~ 139 (230)
.+ +. .. +..-++.++||++.|..+-.... +...+.|+.- .|+.+ +++.++.|..-.-
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 22 11 11 23346789999998876544332 2233333322 12333 4444455543100
Q ss_pred CCceE-------EEE-EEecceeeEEEeecc------ceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 140 ESTLH-------LVL-RLRGGMQIFVKTLTG------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 140 ~~~i~-------l~~-~~~~~~~i~v~~~~g------~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
.+... +.. ++...+.+.++-+.- +.-.+-+ ..+.+.++++.+.+-.|||.++..+.
T Consensus 1036 ~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~L-d~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLL-DANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred HHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEe-cCcchHHHHHHHHHhcCCchhhhhhh
Confidence 00000 000 111123444442221 1112222 35678999999999999999987664
No 179
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=90.67 E-value=0.94 Score=28.99 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=49.6
Q ss_pred eEEEEeeccchHHHHHHHhccccCC--CCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi--~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...+.+....||.+|.+.+..++.- ......+..+|+...+ ...+.-+++||.|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5567788899999999999988631 2366777789988877 4777888999999887777766
No 180
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.43 E-value=1.1 Score=28.48 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.5
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
.|-..+|+...+.+.|+.|+.|+=+.+.++.|+.++.-.++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45567899999999999999999999999999999988888755
No 181
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.26 E-value=1.1 Score=27.35 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=37.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+| +.-.+++..+.|..+||+++... .-.+.+||-+..++..|.+ ++.+.+
T Consensus 1 M~I~v-----N~k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~e-----~D~v~~ 53 (57)
T PF14453_consen 1 MKIKV-----NEKEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELKE-----GDEVFL 53 (57)
T ss_pred CEEEE-----CCEEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccCC-----CCEEEE
Confidence 67777 34467788899999999977653 2367899988877666554 455544
No 182
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.13 Score=42.44 Aligned_cols=60 Identities=23% Similarity=0.408 Sum_probs=45.4
Q ss_pred eeeEEEeeccce--EEEEeeccchHHHHHHHhccccC-CC-CCceEEEEcCeecCCCCcccccc
Q 026973 153 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 153 ~~i~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~g-i~-~~~q~l~~~g~~l~d~~~L~~~~ 212 (230)
+.+.+++.+.+- ..+..+...||++||..++..+- -| +.+|+|+|.|+.|.|+..|.+.-
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 456677666544 45555667899999999999874 33 35799999999999999887653
No 183
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.99 E-value=0.98 Score=29.54 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhC-CCC--CCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~-ip~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
....++++...||++|.+.+..... +.. ....+..|++... .+.-+++|++|.+.....||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 4467788888999999999977652 111 1223556776654 34457889999887655443
No 184
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=89.71 E-value=2.2 Score=28.34 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=37.8
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCcccc
Q 026973 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~ 57 (230)
|.||.. +|.+..+.|+++.+..+|..+|.+++++. ..-.+-|... .|.-|++
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 445544 78999999999999999999999999995 3344445443 3444443
No 185
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.61 E-value=0.1 Score=42.85 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=0.0
Q ss_pred cchHHHHHHHhcc----------ccCCCCCceE-----EEEcCeecCCCCccccccCC-------CCCEEEEEEeccCCC
Q 026973 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGGQ 229 (230)
Q Consensus 172 ~~tV~~lK~~i~~----------~~gi~~~~q~-----l~~~g~~l~d~~~L~~~~i~-------~~~~i~l~~~~~~g~ 229 (230)
+.+|.++|..++. ..++|.+.++ |.|+-+.+-|+++|.+..-. .+.++.+..-..||+
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 5899999999999 7889999888 99999999899999887654 466676655555554
No 186
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.49 E-value=0.11 Score=42.77 Aligned_cols=78 Identities=18% Similarity=0.430 Sum_probs=0.0
Q ss_pred CeeeEEEeccCeeEeeecC---C--CChHHHHHHHHHh----------HhCCCCCCcE-----EEEcCcccCCCccHhhc
Q 026973 76 GMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADY 135 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~---~--~~tV~~lK~~i~~----------~~~ip~~~q~-----L~~~g~~L~d~~tL~~~ 135 (230)
.+.|.++..-+..+.+.+. + +.+|.++|..+++ ..++|.+.++ |.|+-+.+.|.++|.+.
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 3555666554444433322 2 5799999999999 8889999999 99999999999999887
Q ss_pred ccc-------cCCceEEEEEEecce
Q 026973 136 NIQ-------KESTLHLVLRLRGGM 153 (230)
Q Consensus 136 ~i~-------~~~~i~l~~~~~~~~ 153 (230)
.-. .+.++.+.+-..||-
T Consensus 158 l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 158 LADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp -------------------------
T ss_pred HhcccchhccCCceEEEEEEEECCc
Confidence 544 355666655555554
No 187
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.40 E-value=2.3 Score=26.43 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=44.1
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+. +++.+..|+.++-+. .++++....+..+|....- ....+.-+++||.|.++.-..||
T Consensus 6 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r-~~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR-SQHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 4553 455667788877654 4788888888899877753 34677779999999987777666
No 188
>PRK07440 hypothetical protein; Provisional
Probab=89.32 E-value=2.2 Score=27.08 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=45.2
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+. .++.+..|+.+|-+ ..++++....+-.+|....- ....+.-+++||.|.++.-..||
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 4554 55566778887765 33677777888899988753 45788889999999988777776
No 189
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=0.88 Score=37.74 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=44.4
Q ss_pred eeccchHHHHHHHhccccCCCCCceEEEE---cC-----eecCCCCccccccCCCCCEEEEE
Q 026973 169 VESSDTIDNVKAKIQDKEGIPPDQQRLIF---AG-----KQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 169 v~~~~tV~~lK~~i~~~~gi~~~~q~l~~---~g-----~~l~d~~~L~~~~i~~~~~i~l~ 222 (230)
+.-+-||.+++..+..+.|+.+.+++|++ .| ..++.+++|.+|.|++||.+.+-
T Consensus 354 I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34456999999999999999999999985 33 33567789999999999998654
No 190
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=88.98 E-value=2.2 Score=26.59 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=41.8
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+.+.+ ++..|+.+|-+. .++++....+..++....-+ ..+.+ +++||.|.++.-..||
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence 4554444 456788777654 47888888888999876432 34555 9999999877666665
No 191
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=88.90 E-value=2.3 Score=28.17 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=46.1
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+|+.+. +++..|+.+|-+. .++++....+-.+|..+. ....+.+-+++||.|.++.-..||
T Consensus 23 VNG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 23 INDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred ECCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 3455444 4566788887665 367888788889998884 456888999999999987766666
No 192
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=88.57 E-value=2 Score=27.89 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=42.1
Q ss_pred eEeeecCCC-ChHHHHHHHHHhHhC-C-C-CCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~-~tV~~lK~~i~~~~~-i-p-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...++++.+ .||.+|++.+.++.+ + . .....+..|++...+ +.-+++|+.|.+.....||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356778776 899999999998874 1 1 123455677777664 4578889999888665554
No 193
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=88.49 E-value=1.1 Score=28.77 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=36.1
Q ss_pred EEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 156 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
.|..++|+...+.+.+.+|+.++-+..+++.++.|+...|-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 45678899999999999999999999999999988876554
No 194
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=88.22 E-value=0.85 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=47.8
Q ss_pred eEeeecCCCChHHHHHHHHHhHhC-C-CCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~-i-p~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...+.+....||.+|.+.+..+.+ . ......+..||+...+ ...+.-+++|+.|.++....||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 567788889999999999988864 1 2356677788888877 3667778999999887655443
No 195
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=88.15 E-value=2 Score=28.06 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=41.0
Q ss_pred ceEEEEeeccchHHHHHHHhccccC-CCC--CceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~g-i~~--~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
....++++...|+.+|.+.+..... +.. ....+..+++... .+.-+++||.|.++--..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 3466777788899999999977651 111 1234456777654 34567899999877666665
No 196
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.06 E-value=0.85 Score=38.29 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=62.3
Q ss_pred CEEEEEcc--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCC--ccccccccccccceeeeeeec
Q 026973 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~--~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.++|... .-+.+++++..+-....++..+....|++...--+.|+++.+.++ .++.++|+..++.+.+..+..
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 55555543 456889999999999999999999999999999999999998765 779999999999988865543
No 197
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.04 E-value=0.87 Score=38.22 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=56.2
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCC--CccHhhcccccCCceEEEEEE
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~~~ 149 (230)
....+++.+..+-....|+..+....|++.+..-++|+++++.+ ...+.++|+..++++.+..+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 55678888988889999999999999999999999999999865 568999999999988776543
No 198
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=87.84 E-value=4.5 Score=31.06 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=34.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
.+.|..++|.+..+.+++.+|+.++-+.|....||+.
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 4678888999999999999999999999999999954
No 199
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=87.79 E-value=3.5 Score=27.37 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=39.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHh
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~ 133 (230)
++|.+. .+|....+.++++.+..+|..+|.+++++. ....+.|... .|-.|+.
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 445554 467789999999999999999999999985 4566667654 4444443
No 200
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=87.60 E-value=4.4 Score=25.25 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=42.8
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+.+.+ .+..|+.+|.+.+ +.++....+-.++..... ...+..-+++||.|.++.-..||
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 4554444 5567898888654 445556777789988743 35777789999999887766666
No 201
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.54 E-value=2.8 Score=27.68 Aligned_cols=62 Identities=13% Similarity=0.286 Sum_probs=42.0
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCC------C-----CCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i------p-----~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
....++++ ..||.+|.+.+.++++- . .....+..||+....+.. ..+++|+.|.+.....||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34567776 88999999999888641 0 123455577776654321 568899999888766554
No 202
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=87.47 E-value=4.7 Score=30.98 Aligned_cols=73 Identities=27% Similarity=0.342 Sum_probs=51.3
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCC-ceEEEE-c--C---eecCCCCccccccCC-CCCEEEEEE
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G---KQLEDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~~-~--g---~~l~d~~~L~~~~i~-~~~~i~l~~ 223 (230)
...+.|...+|....+.+++.+|++++.+.++++.|++.. .+-|.+ . + .-++...++.+...+ ....+++-.
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 3567788889999999999999999999999999999653 344442 1 1 235556677766655 334554443
Q ss_pred e
Q 026973 224 R 224 (230)
Q Consensus 224 ~ 224 (230)
|
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 3
No 203
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=87.22 E-value=3.8 Score=26.59 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=42.7
Q ss_pred eEEEEeecc-chHHHHHHHhccccC-C-C-CCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~-~tV~~lK~~i~~~~g-i-~-~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...+++... .|+.+|.+.+..+++ + . .....+..+++...+ +.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 346777766 899999999998864 1 1 123455577776653 5678999999887766665
No 204
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=87.18 E-value=5 Score=25.55 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+.|-..+|..-.+.+.|+.||.|.=+++.+..|+.++.-.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 345567889999999999999999999999999999877777555
No 205
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=87.09 E-value=2 Score=26.74 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=42.8
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+ .++++...||.+|.+.+ +++.....+..+|+....+ ...+.-+++|+.|.+.....||
T Consensus 5 Ng~--~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGE--PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCe--EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 455 44556778999988775 5777778777888776432 3344568899999888665554
No 206
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=86.93 E-value=3.9 Score=25.89 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=44.5
Q ss_pred EEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+++++..|+++|-.. .+++++......+|.....+ ...+.-+++||.|.++.-..||
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 4556666889888654 47778888888999887543 4778889999999987777776
No 207
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=86.90 E-value=4 Score=25.62 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=43.8
Q ss_pred ccceEEEEeecc-chHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~-~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+.+ +++.. .||.+|-+. .++++....+-.++..+.. .....+-+++||.|.++.-..||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 45544 44444 578777653 4677787777799988754 45888889999999987777666
No 208
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=86.31 E-value=1.6 Score=36.99 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=52.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC-CCCCCeeEE--ecCccccC-Cccccccccccccc
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d-~~~l~~~~i~~~~~ 66 (230)
.|-|+.-+|......++-.-||.+|+..|..... .+...+.|+ |--++|.| +.||++-|+.+...
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 4678888999999999999999999999999876 444466666 66788876 58999999876543
No 209
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=86.22 E-value=4.9 Score=25.00 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=41.7
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+ +++++.|+.+|-.. .++++...-+.+++..+..+. ...+ +++|+.|.+.-...||
T Consensus 6 NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 46644 44567788887665 588888888889998765322 2345 8999999887655443
No 210
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=86.22 E-value=5.6 Score=26.24 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=42.0
Q ss_pred eEEEEeeccchHHHHHHHhccccCC------C-----CCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi------~-----~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...++++ ..||.+|.+.+.+++.- . .+...+..+|+..+.+.. .-+++||.|.++--..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566665 78999999999887631 0 123555578876654321 568999999888777766
No 211
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=85.78 E-value=4 Score=26.49 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=35.4
Q ss_pred eeEEEeccCeeEe-eecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026973 78 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 78 ~v~v~~~~g~~~~-i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g 123 (230)
.+.+. .++.... +.+..+.|..+|+.+|.+.++.+.....|.|..
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34443 3444455 889999999999999999999998888888865
No 212
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=84.99 E-value=3.5 Score=25.51 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=41.7
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+. ++++.+.|+.+|.+.+ ++++....+..+|..+.. ....++-+++|+.|.+.....||
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 4554 4456677999988764 567766777788877642 22445678999999888665554
No 213
>KOG4261 consensus Talin [Cytoskeleton]
Probab=84.86 E-value=4.5 Score=37.63 Aligned_cols=108 Identities=25% Similarity=0.332 Sum_probs=81.6
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEEE------cCcccCCCccHhhcccccCCceEEEEEEecceeeE
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~---ip~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
+-.-++.+.|+++|-+--..|.+++. .-+....|+. .|-.|+.++++.+|-+.+++++.-.- .+-...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~---k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR---KQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh---hcccce
Confidence 44567889999999998888877764 2244555542 24568899999999999999885432 233567
Q ss_pred EEeeccceEEEEeeccchHHHHHHHhccccCCC-CCceEEE
Q 026973 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI 196 (230)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~q~l~ 196 (230)
++...|..-++.++...+|.+|.--|+.+.||. .+.+.|+
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslv 129 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLV 129 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhh
Confidence 888899999999999999999999999999874 3445444
No 214
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=84.24 E-value=3.7 Score=36.24 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=53.1
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCC------CCCceEEE-EcCeecCCCCccccccCCCCCEEEEEEec
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi------~~~~q~l~-~~g~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
+.|... .+...+.++.+..+.+|--.+-+..+- .+..+.|. -+|..++.+.||.+.||.||+.+++..+.
T Consensus 5 VtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 5 VTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 444433 345778888888999998887776643 24456776 57789999999999999999999887643
No 215
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.90 E-value=4.6 Score=33.84 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=48.7
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
+|+. +++.+..|+.+|-+. .+++++...+..||+...- ....++-+++||.|.++.-..||++
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCCC
Confidence 4554 445566788877654 4788888888899998843 4578889999999999988999975
No 216
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=83.87 E-value=6 Score=24.48 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=42.4
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+. .+++...|+.++-.. .+++.....+..+|..+... ...+.-+++|+.|.+.....||
T Consensus 6 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 4654 466677899887754 57888888888888666532 3445558899999887655443
No 217
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=83.73 E-value=4.7 Score=27.46 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.9
Q ss_pred EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe
Q 026973 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~ 45 (230)
++..+|++.-+.|+.+.|..+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678999999999999999999999999999886 56655
No 218
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=83.65 E-value=2.7 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.9
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g 123 (230)
++.+.+.+..+.++|..+|+++...+++...|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567889999999999999999999999999999864
No 219
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=83.50 E-value=2.8 Score=26.84 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=38.0
Q ss_pred EEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC
Q 026973 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g 199 (230)
+..++|+...+.+.+..|+.++-.++.++-|+.++...++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4568899999999999999999999999999999988877545
No 220
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=83.29 E-value=7.3 Score=24.25 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=40.5
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+ ++..+.|+.+|... .+++.....+-.++..+.. ...++.-+++|+.|.+.-...||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 46544 45667789998865 3555556667788877642 23445568899999887655544
No 221
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=82.80 E-value=2.5 Score=29.96 Aligned_cols=56 Identities=20% Similarity=0.453 Sum_probs=37.7
Q ss_pred EecC-CCcHHHHHHHhhhh----hCCCCCCee------EEec--------------C---ccc---cCCccccccccccc
Q 026973 16 EVES-SDTIDNVKAKIQDK----EGIPPDQQR------LIFA--------------G---KQL---EDGRTLADYNIQKE 64 (230)
Q Consensus 16 ~v~~-~~tv~~lK~~i~~~----~gip~~~q~------l~~~--------------g---~~L---~d~~~l~~~~i~~~ 64 (230)
.|+. +.||.||++.|.+. .|+||-+-. ++.. + -.| +++.+|.++|+.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3665 88999988876665 567774322 2211 1 235 66788999999999
Q ss_pred cceeeee
Q 026973 65 STLHLVL 71 (230)
Q Consensus 65 ~~i~l~~ 71 (230)
..|.+.-
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 9887764
No 222
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=82.56 E-value=5.8 Score=25.72 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 9 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 9 ~g~~~~-~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+|.... +.+..+.|..+|+.+|...++.+.....|.|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 455555 999999999999999999999997778888853
No 223
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=82.55 E-value=5.9 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.5
Q ss_pred eccCeeEeeecCC--CChHHHHHHHHHhHhCCCCCCcEEEE
Q 026973 83 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 83 ~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~ip~~~q~L~~ 121 (230)
..+|....+.+++ +.+..+|++.+..+++++ ...|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3577888888988 779999999999999999 555544
No 224
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=2.9 Score=33.84 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=56.6
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCccccccCCCCCEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~~L~~~~i~~~~~i~l 221 (230)
-.+.++.++|++....+++..+...++.-|.-+.+...+.+.|. |....+ +-.++|...++-+.+++.+
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 35788889999999999999999999999999998877777776 444444 3447999999998888753
No 225
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=82.27 E-value=4.2 Score=26.19 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.7
Q ss_pred cCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026973 85 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 85 ~g~~~~i~v~-~~~tV~~lK~~i~~~~~ip~~~q~L~~~g 123 (230)
+|..+.+.++ .+.|..+|+.+|.+.++.+.....+.|..
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3566778888 88999999999999999886666666655
No 226
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=82.23 E-value=3.4 Score=26.85 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=33.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
-|+.+.+.++.+..+|..+|.+++..|++.-.|.|..
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 4678899999999999999999999999999999853
No 227
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=82.01 E-value=7.1 Score=25.83 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=45.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|.|+| +|+. .+++.+.||.+|-.. .++++...-+-.||..+. ....++.-+++|+.|.++-...||
T Consensus 19 m~I~V---NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 19 ITISI---NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred EEEEE---CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45554 4664 445667788888765 478887777778997773 345667779999999887655443
No 228
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=81.89 E-value=6.4 Score=26.19 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=30.3
Q ss_pred EEee-ccchHHHHHHHhcc-ccCCCC-C---ceEEEEcCee----cCCCCccccccCCCCCEEEE
Q 026973 167 LEVE-SSDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 167 ~~v~-~~~tV~~lK~~i~~-~~gi~~-~---~q~l~~~g~~----l~d~~~L~~~~i~~~~~i~l 221 (230)
+.++ ...|+.+|-+.|.+ +.|... + .-.++|.... -...++|+++||.+|+.+.+
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV 66 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence 3444 35799999888766 556432 2 3344554432 23568999999999998865
No 229
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=81.73 E-value=7.4 Score=24.95 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=37.7
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
-..+|.+-.+.+.|+.||.|+=.+..+..|++++.-.++..|
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 356889999999999999999999999999999988888665
No 230
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=81.43 E-value=2.7 Score=27.88 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=35.7
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCce
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q 193 (230)
+.+.+..++|....+++..+++..++-+.++.+.|+|.+-.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 35667778899999999999999999999999999987643
No 231
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=81.39 E-value=7.2 Score=25.06 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=34.1
Q ss_pred EEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCCeeEEec
Q 026973 2 QIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~ 46 (230)
.|.+.. +|..+.+.+. .+.|..+|+++|.+.++.+...-.+.|.
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 344533 4678888888 9999999999999999998645555554
No 232
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=81.27 E-value=2 Score=30.52 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccc
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~ 58 (230)
+...+-|+.+.||+++...|.++.++++++--|+.++..+..+.++.+
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 445557999999999999999999999988333356655555555544
No 233
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=80.02 E-value=9.6 Score=25.02 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=29.4
Q ss_pred EEEEccCCcEEEEEecC--CCcHHHHHHHhhhhhCCC
Q 026973 3 IFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gip 37 (230)
|.+ +.+|.+..+.+++ ..|..+|++.|..+++++
T Consensus 3 vKa-ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 3 LKV-TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEE-EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 344 4578999999999 669999999999999999
No 234
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=80.01 E-value=2.7 Score=37.72 Aligned_cols=65 Identities=35% Similarity=0.526 Sum_probs=42.8
Q ss_pred cceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEE--c--Ce-ecCCC-------------CccccccCCC
Q 026973 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~--~--g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...++++|-..+||.++|++|-... +.| ++..-|.| + |+ .|.|. .||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3458888889999999999997753 222 34555554 2 23 34332 4899999999
Q ss_pred CCEEEEEEecc
Q 026973 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~l~~~~~ 226 (230)
|+++-++.|+.
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999988863
No 235
>PRK07440 hypothetical protein; Provisional
Probab=79.93 E-value=12 Score=23.70 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=45.9
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
.|.|.+ +|+. .++....||.+|-.. .++++...-+-.+|..+.. ....+.-+++|+.|.+.--..||
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 355555 4654 566677899987753 5778877778889877742 24556678899999887655443
No 236
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=79.52 E-value=5.8 Score=36.57 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=37.9
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCccc
Q 026973 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L 126 (230)
.++..+.+.++++.|+..++..|+..+|+|...|.|.|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 3566788999999999999999999999999999999987543
No 237
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=79.37 E-value=12 Score=22.98 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=38.1
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+ .+++++..|++++.+.+ +++ ....+..+|...... ...+.-+++|+.|.+.....||
T Consensus 6 Ng~--~~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQ--TLSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCE--EEECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 455 44566778999988765 333 234556788765432 2334458899999888665544
No 238
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=6.9 Score=31.77 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=56.9
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCccHhhcccccCCceEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 145 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l 145 (230)
..-.+.|+..+|+++...+++..|..+++.-|.-..+...+...|. |....+. -.++|..+++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4567888889999999999999999999999999999877777665 4444442 256899999988877644
No 239
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=79.14 E-value=10 Score=33.58 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=54.2
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC----C--CCCcEEE-EcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----P--PDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i----p--~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+|+|...+ +...+-++.+..|++|--.+-+..+- + ...-.|. -+|.+|+.+.||.+.|+.+|+.+++....
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 56665444 44788889999999999988887763 2 2233444 56789999999999999999999888643
No 240
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=78.10 E-value=4.7 Score=26.79 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=37.2
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
++.|...+|.+..+.+..+++-.++-+.+..+.|+|.+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 46677789999999999999999999999999999997665
No 241
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=76.34 E-value=7.6 Score=27.54 Aligned_cols=55 Identities=22% Similarity=0.498 Sum_probs=37.3
Q ss_pred cCC-CChHHHHHHHHHhHh----CCCC------CCcEEEEc----------------C-ccc---CCCccHhhcccccCC
Q 026973 93 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKES 141 (230)
Q Consensus 93 v~~-~~tV~~lK~~i~~~~----~ip~------~~q~L~~~----------------g-~~L---~d~~tL~~~~i~~~~ 141 (230)
++. +.||.+|++.+.+.. |+|| +..++.+. . ..| +++.+|.++|+.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 776 889999988887754 3443 22223221 1 346 678899999999998
Q ss_pred ceEEEE
Q 026973 142 TLHLVL 147 (230)
Q Consensus 142 ~i~l~~ 147 (230)
.|.+..
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 887653
No 242
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=75.59 E-value=22 Score=23.92 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=31.0
Q ss_pred ccCeeEeeecCC-----CChHHHHHHHHHhHhCCCC-CCcEEEEcC
Q 026973 84 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 123 (230)
Q Consensus 84 ~~g~~~~i~v~~-----~~tV~~lK~~i~~~~~ip~-~~q~L~~~g 123 (230)
.+|....+.++. +.+..+|+++|.+.+++++ ....|.|..
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 455566666664 6899999999999999988 566777765
No 243
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=75.40 E-value=5.3 Score=28.39 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=35.0
Q ss_pred ecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhc
Q 026973 92 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 92 ~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~ 135 (230)
-|+.+.||+++...|..+.+++++..-|..++..+..+.++++.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 69999999999999999999999884444566555666677664
No 244
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=75.22 E-value=10 Score=24.87 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=41.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecCccccCCccccccccccccceeeee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+..+...+.+..||.++=+ ..|+|..+-.+. .||+..+-+ |-+.+|+++.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 5678889999999999877 899999998777 588776654 5566777776654
No 245
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=74.93 E-value=11 Score=22.96 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=33.1
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+++..+.|..+||.++.. +.-.++++|-...++. -+++|+.|.+.
T Consensus 9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~-----~L~e~D~v~~I 54 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP------DADIVILNGFPTKEDI-----ELKEGDEVFLI 54 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCcc-----ccCCCCEEEEE
Confidence 5778888899999988554 3346789998887654 45567776554
No 246
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=74.45 E-value=12 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.3
Q ss_pred EeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE
Q 026973 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 82 ~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~ 121 (230)
+-.+|++..+.|+.+.|..+|+.++++.++++.. ..|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 3467889999999999999999999999998876 55555
No 247
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.32 E-value=3.7 Score=34.22 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.6
Q ss_pred ecCCCChHHHHHHHHHhHhCCCCCCcEEEEc---Ccc-----cCCCccHhhcccccCCceEEE
Q 026973 92 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 92 ~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~---g~~-----L~d~~tL~~~~i~~~~~i~l~ 146 (230)
-+.-.-||.+++..+....|+.+.+++|++- |+. +..+.+|..|.|++|+.+.+-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3444569999999999999999999999864 322 344667888889999877543
No 248
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=74.30 E-value=13 Score=24.66 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=34.9
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~ 45 (230)
|.|-..+|.+.++.|+..+|++++=+.+..+.+.....-.-++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv 47 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV 47 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4555678999999999999999999999999887775544333
No 249
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=74.28 E-value=17 Score=22.23 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=37.3
Q ss_pred EEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+++++..|+.+|.+.+. ++ ....+..+|.....+ ...+.-+++||.|.++.=..||
T Consensus 10 ~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 10 LSLPDGATVADALAAYG----AR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 44556778998887663 33 234556888776432 3556668999999877666665
No 250
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=74.15 E-value=5.6 Score=37.30 Aligned_cols=64 Identities=17% Similarity=0.377 Sum_probs=48.7
Q ss_pred ccceEEEEeec-cchHHHHHHHhccccCCCCCceEEE-EcCeecCCCCccccccC--CCCCEEEEEEe
Q 026973 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI--QKESTLHLVLR 224 (230)
Q Consensus 161 ~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~~L~~~~i--~~~~~i~l~~~ 224 (230)
.|+...+..+. +.|+.+||.+|.+++|+...++.|+ -+|..|..++.|..|.- .+..-|++..+
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNK 70 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeeh
Confidence 36666677664 5799999999999999999999887 67788999999988873 24445555433
No 251
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=73.27 E-value=12 Score=24.09 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=35.0
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
|-.++|+...+.+.++.|+.++-+..+++.++.|..--|.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 4567899999999999999999999999999988876554
No 252
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=73.01 E-value=20 Score=22.39 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=41.2
Q ss_pred CEEEEEccCCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+.+ ..+ .||.+|-+ ..++++..-..-+||..+.. ...+.+-+.+++.+.+.-
T Consensus 1 m~I~v---NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 55555 7776644 454 67888776 56888876667788866653 335566688888887754
No 253
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=72.49 E-value=15 Score=24.28 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=43.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc-EEE-EcC-----cccCCCccHhhc
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FAG-----KQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q-~L~-~~g-----~~L~d~~tL~~~ 135 (230)
.-|.|...+|....+.|+...|++++-+.+..+.....+.- .|+ +.. +.++|+..+-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 35677778999999999999999999999999998665544 333 222 456776655443
No 254
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=70.64 E-value=33 Score=23.88 Aligned_cols=59 Identities=8% Similarity=0.243 Sum_probs=42.2
Q ss_pred eeeEEEeccC----eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCccc--CCCccHhhc
Q 026973 77 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g----~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L--~d~~tL~~~ 135 (230)
+.|.++.-++ +.-...+++++|++.+...+.+..+++++++-++|=+.-. ..+..+...
T Consensus 31 V~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~L 95 (116)
T KOG3439|consen 31 VQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNL 95 (116)
T ss_pred EEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHH
Confidence 4455543332 3456789999999999999999999999999988766544 334444443
No 255
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=70.56 E-value=15 Score=24.04 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=41.0
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCccHhhcccccCCceEEEE
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+..+...++...||.++-+. .|+|.....++ -||+...- +|-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 35677889999999987654 79999999777 68877654 36778899887764
No 256
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=69.91 E-value=28 Score=22.70 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.2
Q ss_pred cceEEEEeeccchHHHHHHHhccccCCC--CCceEEE
Q 026973 162 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 196 (230)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~l~ 196 (230)
+....+.++.++|..++-+.+.+++++. +.++.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678899999999999999999999876 6677776
No 257
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=69.55 E-value=19 Score=24.15 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCcEEEEEec-----CCCcHHHHHHHhhhhhCCCC-CCeeEEecC
Q 026973 9 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 47 (230)
Q Consensus 9 ~g~~~~~~v~-----~~~tv~~lK~~i~~~~gip~-~~q~l~~~g 47 (230)
+|...-+.++ ++.+..+|+++|.+.+++++ ..-.|.|..
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 6666666666 47999999999999999998 445555643
No 258
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=69.54 E-value=10 Score=25.49 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=33.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecCcc
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 49 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~ 49 (230)
+.+++.|++++|=.|+|+.|+..+|+++..-+-. +.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 6899999999999999999999999999775544 66643
No 259
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=69.02 E-value=26 Score=22.10 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=42.1
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+++++...|+++|-+. .++++...-...||.....+ ...+.-+++|+.|.++-...|
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~G 67 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGG 67 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecC
Confidence 5666777899998765 68888888888999877543 356667888898887755444
No 260
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=68.89 E-value=7.1 Score=26.38 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=34.5
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcEEEEc-C------cccCCCc---cH--hhcccccCCceEEEEEEecc
Q 026973 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQLEDGR---TL--ADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~-g------~~L~d~~---tL--~~~~i~~~~~i~l~~~~~~~ 152 (230)
++.+...||.++-+.+.+.+ |..+..++.. | ..|-++. .+ .++-+++|+.|.+.....+|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 44446779999999998876 2333333321 1 1111111 22 35678899998887655443
No 261
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=68.71 E-value=2.2 Score=27.52 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=21.5
Q ss_pred HhccccCCCCCceEEEE---cCeecCCCCccccccCCC
Q 026973 181 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 181 ~i~~~~gi~~~~q~l~~---~g~~l~d~~~L~~~~i~~ 215 (230)
.||++..+.|+...|.. .+.+|+-+++|.++||++
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 47888888888888873 557899999999999964
No 262
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=68.41 E-value=16 Score=31.40 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=50.1
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhcccc--CCCCCceEEEE----cCe--ecCCCCccccccCCCCCEEEEEE
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIF----AGK--QLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~--gi~~~~q~l~~----~g~--~l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
+.+++..| ...+++.++++.+-|-.++-..+ +..|++..++- .|. -+..++++.+.|+.+|+.+++-+
T Consensus 3 ~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 3 FRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 44554444 56789999999988877776654 46788888873 222 14567899999999999999877
No 263
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=68.35 E-value=15 Score=24.72 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=34.3
Q ss_pred EeeccchHHHHHHHhccccCCCCCceEE-------------EEcCeecCCCCcc--ccccCCCCCEEEEEEeccCC
Q 026973 168 EVESSDTIDNVKAKIQDKEGIPPDQQRL-------------IFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 168 ~v~~~~tV~~lK~~i~~~~gi~~~~q~l-------------~~~g~~l~d~~~L--~~~~i~~~~~i~l~~~~~~g 228 (230)
..+...||.+|-+.+.+++. ..+-.+ +.||+ |-..+ .++-+++||.|.+.--..||
T Consensus 24 ~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~---di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDT---DWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred cCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCc---cccccCCcccCCCCcCEEEEECCCCCC
Confidence 33356799999888888762 222222 23332 22334 35778999999887766655
No 264
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=68.32 E-value=13 Score=25.71 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=29.7
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCccccCCccccc
Q 026973 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 58 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L~d~~~l~~ 58 (230)
-|+.+.||+++...|.++..+++++ .|+ .++..+..+.++++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~-alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQ-ALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS--EEEEBTTBESSTTSBHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCc-eEEEEEcCcccchhhHHHH
Confidence 4799999999999999999999864 433 46655555666654
No 265
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=17 Score=25.31 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=40.0
Q ss_pred ceEEEEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeec
Q 026973 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (230)
Q Consensus 142 ~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l 202 (230)
.|.+.++.-|+..+. +.....+++++|++.+-..+.+..+++..++-++|=+.-.
T Consensus 30 kV~i~l~aiG~~Pil------K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPIL------KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred eEEEEEeccCCCcce------ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 344444444554443 4557889999999999999999999999998887755433
No 266
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=67.21 E-value=11 Score=25.36 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=33.9
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecCcc
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~ 49 (230)
.+.+.+.|++.+|=.|+|+.++..+|+++..-.-. ..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 57999999999999999999999999999875543 55544
No 267
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=67.05 E-value=27 Score=23.70 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.0
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEE
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~-~~q~L~ 120 (230)
|.|--.++...++.++.++||+++-..+.+++.++. .+.+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 444456777788999999999999999999998776 445544
No 268
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=66.49 E-value=12 Score=24.26 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=30.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeE
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l 43 (230)
.+.+++.|++++|=.|+|+.|+..+|+.+..-+-
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3689999999999999999999999999876553
No 269
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=66.26 E-value=29 Score=22.24 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=47.4
Q ss_pred EEEeeccchHHHHHHHhccccCCCCCceEEE-EcCeecCCCCccccccCCCCCEEEEEEeccC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~ 227 (230)
.+.|.+....-.+-+-.++++.+|+....++ -.|.=....++-...-++.|+.+.++-|-+=
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrv 81 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRV 81 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccC
Confidence 3566766666666666777788988877666 5666678889999999999999999887653
No 270
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=65.42 E-value=17 Score=23.79 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=32.7
Q ss_pred eEEEeeccc----eEEEEeeccchHHHHHHHhccccCC--CCCceEEE
Q 026973 155 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 196 (230)
Q Consensus 155 i~v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gi--~~~~q~l~ 196 (230)
+.|...++. ...+.++.++|+.++-+.+.+++++ .+..+.|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 344444454 7789999999999999999999998 45677783
No 271
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=65.09 E-value=34 Score=21.96 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=39.1
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhC-CCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEE
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV 81 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v 81 (230)
+.|-.-..++.|+.+|+..|.+++. +=|....+.. ..|+|+. .|.+.++..+.=+......+++.+
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~---~cDLD~d~~V~DVf~~~~~vrvi~ 69 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSD---GCDLDPDFLVKDVFNSNNVVRVIL 69 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCC---CCCCCcccEeeeeeccCCEEEEEe
Confidence 3455567899999999999999976 3333334332 4555543 455555555444443333344444
No 272
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=13 Score=34.50 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=61.2
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--E--cCccc--CCCccHhhcccccCCceEEEE--EEec-ceeeEEE
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVL--RLRG-GMQIFVK 158 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~--~g~~L--~d~~tL~~~~i~~~~~i~l~~--~~~~-~~~i~v~ 158 (230)
.+.+.|+...+++.+|+.|++..++|.+..++. + +|..+ .++.+|+.. .++++|.+.+ .+.. ...+.+.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 577889999999999999999999999999987 2 23334 356677764 4666666544 2222 2222222
Q ss_pred ee----ccc-e----EEEEeeccchHHHHHHHhccc
Q 026973 159 TL----TGK-T----ITLEVESSDTIDNVKAKIQDK 185 (230)
Q Consensus 159 ~~----~g~-~----~~~~v~~~~tV~~lK~~i~~~ 185 (230)
.. +.+ . +..-+..++|+++.|..+-.+
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~ 991 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRM 991 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHH
Confidence 22 111 1 122355678998887766554
No 273
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=64.67 E-value=27 Score=22.58 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhHhCC-----CCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 96 SDTIDNVKAKIQDKEGI-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~i-----p~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
..||++|++.+.++..- .....+...|+....+ +.-+++|+.|-+.....||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 47999999999888631 1122233344433222 3458889999887655544
No 274
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=64.65 E-value=8.4 Score=26.15 Aligned_cols=29 Identities=38% Similarity=0.782 Sum_probs=22.4
Q ss_pred eEEecCccccCCccccccccccccceeeee
Q 026973 42 RLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 42 ~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|.|.|++|.++.+|++| +..+..-.+.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiiv 31 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIV 31 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEE
Confidence 478999999999999999 66555544443
No 275
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=63.57 E-value=27 Score=22.27 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=41.7
Q ss_pred EEEEeeccchHHHHHHHhccccCCCCCceEEEE-cCeecCCCCccccccCCCCCEEEEE
Q 026973 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~L~~~~i~~~~~i~l~ 222 (230)
..+++.+......+-+-.++.+.+|+....++. .|.-....++-..-.++.|+.++++
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 346677777666666677777899998887774 5666788999999899999998864
No 276
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.80 E-value=15 Score=24.25 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeE
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l 43 (230)
.+.+++.|++.+|=.++|+.|+..+|+.+..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 4689999999999999999999999999976553
No 277
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=62.70 E-value=12 Score=33.77 Aligned_cols=65 Identities=35% Similarity=0.520 Sum_probs=41.2
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEEc-C---c-ccCCC-------------ccHhhccccc
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~ip------~~~q~L~~~-g---~-~L~d~-------------~tL~~~~i~~ 139 (230)
...+++.|-..+||.++|++|-+.. +.| ++..-|-|. | . .|.|. .||++|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 4558888989999999999997643 232 344444431 2 2 33331 3899999999
Q ss_pred CCceEEEEEEe
Q 026973 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.+..+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99998887654
No 278
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=62.49 E-value=25 Score=23.85 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.3
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCC-CceEEE
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 196 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~l~ 196 (230)
|.|--.++...++.+..+.||+++-..+.++..++. .+++|+
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 344445666788999999999999999999988765 567766
No 279
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=62.31 E-value=13 Score=34.94 Aligned_cols=62 Identities=18% Similarity=0.380 Sum_probs=46.6
Q ss_pred cCeeEeeecCCC-ChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhcccc--cCCceEEE
Q 026973 85 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQ--KESTLHLV 146 (230)
Q Consensus 85 ~g~~~~i~v~~~-~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~i~--~~~~i~l~ 146 (230)
.|+...++.+.. .|+++||..|+...|+....+.+.- +|..+..++.+..|.-- +.+-|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 466777777764 5999999999999999999999885 45667778888887632 23345444
No 280
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=61.85 E-value=13 Score=25.25 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=22.0
Q ss_pred EEEEcCeecCCCCccccccCCCCCEEEEEEe
Q 026973 194 RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 194 ~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.|-|.|+.|..+++|++| +..+..-.+++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 456899999999999999 555554444544
No 281
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=61.41 E-value=9.1 Score=24.99 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=32.2
Q ss_pred hHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCCCC
Q 026973 174 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGQF 230 (230)
Q Consensus 174 tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g~~ 230 (230)
|-++.+ .+-+++++.+++...+ +.++--..+||.+.|+.|.+..+ ..+|.|
T Consensus 19 s~eE~~-~lL~~y~i~~~qLP~I-----~~~DPv~r~~g~k~GdVvkI~R~S~taG~~ 70 (79)
T PRK09570 19 SEEEAK-KLLKEYGIKPEQLPKI-----KASDPVVKAIGAKPGDVIKIVRKSPTAGEA 70 (79)
T ss_pred CHHHHH-HHHHHcCCCHHHCCce-----eccChhhhhcCCCCCCEEEEEECCCCCCcc
Confidence 334444 4555567777665443 33444567889999999998876 445543
No 282
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=61.22 E-value=12 Score=32.34 Aligned_cols=77 Identities=13% Similarity=0.275 Sum_probs=63.5
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCccccccCCCCCEEEEEEec
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
...++.++.++|..+.-+++.++-...++.-+...-++....+.|- |..++. +-+++|.+..+-+...+.++-|.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4578899999999999999999999999999998888888888775 666665 34589999999999988777765
Q ss_pred cC
Q 026973 226 RG 227 (230)
Q Consensus 226 ~~ 227 (230)
++
T Consensus 393 r~ 394 (506)
T KOG2507|consen 393 RA 394 (506)
T ss_pred Cc
Confidence 44
No 283
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=61.09 E-value=20 Score=23.08 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=21.7
Q ss_pred EEEEEe-cCCCcHHHHHHHhhhhhCC--CCCCeeEEecC
Q 026973 12 TITLEV-ESSDTIDNVKAKIQDKEGI--PPDQQRLIFAG 47 (230)
Q Consensus 12 ~~~~~v-~~~~tv~~lK~~i~~~~gi--p~~~q~l~~~g 47 (230)
..++.+ +.+.+|.|||+.|....++ ....+-.+++.
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na 49 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNA 49 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEES
T ss_pred ccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECC
Confidence 344555 3467999999999766555 33333333543
No 284
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=60.97 E-value=16 Score=25.57 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=31.0
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCcccc
Q 026973 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 57 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~ 57 (230)
-|+.+.||+++...|..+.++++++-.++| ++.....+.++.
T Consensus 46 lVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~ 88 (112)
T cd01611 46 LVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMS 88 (112)
T ss_pred EecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHH
Confidence 489999999999999999999997644444 443334444444
No 285
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=60.63 E-value=34 Score=22.45 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=27.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
+...++.|++++|..++=..+.++++++..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 567899999999999999999999999753
No 286
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=60.51 E-value=44 Score=21.73 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=25.0
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
..++.|++.+|+.++-+.+..+++++.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~ 44 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAE 44 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 789999999999999999999999933
No 287
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=59.34 E-value=34 Score=29.54 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=52.4
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEc----Ccc--cCCCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--ip~~~q~L~~~----g~~--L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
|.+.+++..|. ..+++.++++.+.|-.++-.... ..|+...+.-+ |.. +..+.++.+.|+..|..+++..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34667777775 68999999999999888877654 56667777633 221 3456799999999999998876
No 288
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.95 E-value=10 Score=33.12 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=49.8
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEE
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.++.+..-|-+++...|++..||+-+..+.+.+|+.+.-.+||.+-|++.+....+.+
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 4566667788999999999999999999999999999999999999998776554443
No 289
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=58.84 E-value=39 Score=22.12 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=38.0
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc-----ccCCCccHhhcc
Q 026973 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----QLEDGRTLADYN 136 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~-----~L~d~~tL~~~~ 136 (230)
.+|....+.++..-|-+.|++++...+.+|+...-+.|-.. .|.++.-|.++-
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~ 64 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFY 64 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHH
Confidence 45656667777777999999999999999998777777432 244555555543
No 290
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=58.80 E-value=17 Score=23.71 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=39.0
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC-----eecCCCCcccccc
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYN 212 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g-----~~l~d~~~L~~~~ 212 (230)
.+|.+..+.++..-|-+.|+++++..+.+|++..-+.|-. ..|.++..|.++-
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~ 64 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFY 64 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHH
Confidence 4566777778878899999999999999999887777733 2344555565543
No 291
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.60 E-value=35 Score=28.70 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=45.8
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+. ++++.+.||.+|-.. .+++++..-+..||+.+. .....++-+++|+.|.++-...||
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCC
Confidence 4664 555677888887755 588888888889998874 234566779999999998777666
No 292
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=58.50 E-value=48 Score=21.51 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
+...++.|+.++|..++-+.+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 5678999999999999999999999998
No 293
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.39 E-value=56 Score=21.96 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=48.1
Q ss_pred eEEEEEEecceeeEEEeeccceEEEEee-ccchHHHHHHHhccccCCCCCceEEEEcCee------c---CCCCcc--cc
Q 026973 143 LHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ------L---EDGRTL--AD 210 (230)
Q Consensus 143 i~l~~~~~~~~~i~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~------l---~d~~~L--~~ 210 (230)
+.+.++..+|..+......-.....++. ...||.+|-.-+..++--.++ +.++.+|.+ | .|.-.| .+
T Consensus 5 ~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~-~lFi~~gsvrpGii~lINd~DWElleked 83 (101)
T KOG4146|consen 5 HEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRD-SLFIHHGSVRPGIIVLINDMDWELLEKED 83 (101)
T ss_pred eeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCc-ceEeeCCcCcCcEEEEEeccchhhhcccc
Confidence 3455666677666544222222333322 456899987777776522222 244444421 2 133333 57
Q ss_pred ccCCCCCEEEEEEeccCC
Q 026973 211 YNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 211 ~~i~~~~~i~l~~~~~~g 228 (230)
|.+++||.|.++.-+-||
T Consensus 84 y~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 84 YPLEDGDHIVFISTLHGG 101 (101)
T ss_pred cCcccCCEEEEEEeccCC
Confidence 899999999888877665
No 294
>PRK08453 fliD flagellar capping protein; Validated
Probab=56.83 E-value=45 Score=31.14 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=50.6
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhh-----------CCCCCCeeEEecCccccCCc------cccccccccccceeee
Q 026973 8 LTGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLEDGR------TLADYNIQKESTLHLV 70 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~-----------gip~~~q~l~~~g~~L~d~~------~l~~~~i~~~~~i~l~ 70 (230)
.+|++++++|..+.|+.+|+.+|-... |= ..-.+|.+.+...-.+. +|++..+..+.--.+-
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~-~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~ 213 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGG-NDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVD 213 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCC-CccEEEEEeccCcCCCceEEEeccccccccCCccccccc
Confidence 369999999999999999999999532 21 11245555554443332 3333333333311111
Q ss_pred eeecCCeeeEEEeccCeeEeeec
Q 026973 71 LRLRGGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~i~v 93 (230)
..-.+.+.|.++..+|+.+.+.+
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 214 GSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred ccccccceeeeeccCCccccccc
Confidence 12234578888888887765544
No 295
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=55.82 E-value=40 Score=22.25 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=37.2
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCC-------CCeeEEecCc-ccc----C--Cccccccccccccceeee
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGK-QLE----D--GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~-------~~q~l~~~g~-~L~----d--~~~l~~~~i~~~~~i~l~ 70 (230)
+++++++|+.++-+.+.....+.. ....|++.+- .|. . +++|.+. +.+|..+.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 579999999999999998854333 3445555442 121 2 5788888 7777777764
No 296
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=55.64 E-value=21 Score=24.18 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
.+.+++.|++++|=.++|+.|+..+|+-+..-.-+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl 55 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTL 55 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 47899999999999999999999999988765543
No 297
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=55.62 E-value=12 Score=25.45 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=41.9
Q ss_pred EEEEEecceeeEEEeeccceEEEEee---ccchHHHHHHHhccccCCC------------CCceEEEEcCeecCCCCcc-
Q 026973 145 LVLRLRGGMQIFVKTLTGKTITLEVE---SSDTIDNVKAKIQDKEGIP------------PDQQRLIFAGKQLEDGRTL- 208 (230)
Q Consensus 145 l~~~~~~~~~i~v~~~~g~~~~~~v~---~~~tV~~lK~~i~~~~gi~------------~~~q~l~~~g~~l~d~~~L- 208 (230)
+.+...+|..+... +.+.+.++++ ...|+.+|-..+++..--+ |.-..| -++. |..-+
T Consensus 2 i~vEF~GGlE~Lf~--~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvL-INd~---DwEl~g 75 (96)
T PF09138_consen 2 ITVEFSGGLELLFG--NQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVL-INDA---DWELLG 75 (96)
T ss_dssp EEEEEETTCGGGTT--T-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEE-ETTC---EHHHHT
T ss_pred EEEEEcCcHHHHhC--CceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEE-EcCc---cceeec
Confidence 34556677665543 3456777776 6679999988888864211 211111 1111 12222
Q ss_pred -ccccCCCCCEEEEEEeccCC
Q 026973 209 -ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 209 -~~~~i~~~~~i~l~~~~~~g 228 (230)
.+|-+++||+|.++.-+-||
T Consensus 76 ~~~y~l~~~D~I~FiSTLHGG 96 (96)
T PF09138_consen 76 EEDYVLKDGDNITFISTLHGG 96 (96)
T ss_dssp CCCSB--TTEEEEEEETTT--
T ss_pred CcceEcCCCCEEEEEccCCCC
Confidence 46899999999988877666
No 298
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=54.79 E-value=62 Score=22.32 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=36.5
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcE-EEEcCcccCCCccHhhccc---ccCCceEEE
Q 026973 91 LEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADYNI---QKESTLHLV 146 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~ip~~~q~-L~~~g~~L~d~~tL~~~~i---~~~~~i~l~ 146 (230)
+-|+.+.||++|...|..+..++++.-- |..++.....+.++++.-- .++.-+++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~ 96 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMT 96 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEE
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEE
Confidence 4478899999999999999999887533 3456655567778876432 234455554
No 299
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=54.15 E-value=14 Score=23.87 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=21.8
Q ss_pred HHHhHhCCCCCCcEEEE---cCcccCCCccHhhccccc
Q 026973 105 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 105 ~i~~~~~ip~~~q~L~~---~g~~L~d~~tL~~~~i~~ 139 (230)
.|+++..+.|....|.- .+.+|+-.++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 47788888898888873 457888899999999984
No 300
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=53.55 E-value=19 Score=24.08 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=33.8
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcc
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 125 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~ 125 (230)
..+.+.|++..|=.++|+.++..+|+++...+-. +.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 5689999999999999999999999999887655 66653
No 301
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=53.30 E-value=12 Score=24.15 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCCC
Q 026973 175 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGQ 229 (230)
Q Consensus 175 V~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g~ 229 (230)
-++.+ ++-+++++.+++...+. .++--.+++|.+.|+.|.+..+ ..+|.
T Consensus 17 ~eE~~-~lL~~y~i~~~qLP~I~-----~~DPv~r~~g~k~GdVvkI~R~S~taG~ 66 (74)
T PF01191_consen 17 EEEKK-ELLKKYNIKPEQLPKIL-----SSDPVARYLGAKPGDVVKIIRKSETAGE 66 (74)
T ss_dssp HHHHH-HHHHHTT--TTCSSEEE-----TTSHHHHHTT--TTSEEEEEEEETTTSE
T ss_pred HHHHH-HHHHHhCCChhhCCccc-----ccChhhhhcCCCCCCEEEEEecCCCCCC
Confidence 33433 44445677777655543 3444567889999999998877 44553
No 302
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=52.55 E-value=19 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHhhhhh-CCCC
Q 026973 13 ITLEVESSDTIDNVKAKIQDKE-GIPP 38 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~-gip~ 38 (230)
+.++++.++|+.++|+.+-+.. ..|.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL 28 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPL 28 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTT
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCCh
Confidence 5789999999999999766554 3444
No 303
>CHL00030 rpl23 ribosomal protein L23
Probab=52.51 E-value=26 Score=23.69 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=32.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecC
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g 47 (230)
..+.+++.|++++|=.|+|+.|+..+|+.+..-.-. ..|
T Consensus 18 e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~ 57 (93)
T CHL00030 18 EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPR 57 (93)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCC
Confidence 457899999999999999999999999988765543 444
No 304
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=51.66 E-value=56 Score=21.27 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHhHhCCCCCCcEEEE--cCcccCCCccHhh
Q 026973 97 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 134 (230)
Q Consensus 97 ~tV~~lK~~i~~~~~ip~~~q~L~~--~g~~L~d~~tL~~ 134 (230)
.+..+|+.+.++.++++....+|.. .|.+.+|+.-+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh
Confidence 4899999999999999987777774 6778877654444
No 305
>KOG4261 consensus Talin [Cytoskeleton]
Probab=51.61 E-value=56 Score=30.88 Aligned_cols=101 Identities=26% Similarity=0.326 Sum_probs=77.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC---CCCeeEEec------CccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip---~~~q~l~~~------g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
+-.-++...|+.+|.|-=+.|.+++... ++.-.|+.. |--|+..++|..|-+..++++...- ..-.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~---k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR---KQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh---hcccce
Confidence 5577899999999999777776664311 444555543 3457888999999999988876643 334577
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCC
Q 026973 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip 113 (230)
++.++|..-++.++...+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 888899888999999999999999998888763
No 306
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=51.17 E-value=47 Score=28.97 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=61.4
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccCC---CccHhhcccccCCceEEEEE
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+..++.|+.++|..+.-.++.++-...++.-+...-++......|- |..++..+ .++|.++.+.+...+-|..+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 35678888899999999999999999999999998888888777775 76676643 67899999999887755544
Q ss_pred Ee
Q 026973 149 LR 150 (230)
Q Consensus 149 ~~ 150 (230)
.+
T Consensus 392 ~r 393 (506)
T KOG2507|consen 392 KR 393 (506)
T ss_pred CC
Confidence 43
No 307
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=51.08 E-value=83 Score=22.00 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=33.8
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhc
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 135 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~ 135 (230)
.+-|+.+.||+++...|..+..++++.--.+| ++.....+.++++.
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 34589999999999999999998887654444 55444556666554
No 308
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=51.07 E-value=80 Score=21.80 Aligned_cols=73 Identities=27% Similarity=0.299 Sum_probs=44.5
Q ss_pred eeeEEEecc-CeeEeeecCCCChHHHHHHHHHhHh----C--CCCC-CcEEEEcCc--ccCCCccHhhcc-----cccCC
Q 026973 77 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKES 141 (230)
Q Consensus 77 ~~v~v~~~~-g~~~~i~v~~~~tV~~lK~~i~~~~----~--ip~~-~q~L~~~g~--~L~d~~tL~~~~-----i~~~~ 141 (230)
+.|.+...+ ...+.+.+++++|+.++.+.+-.+. + -+++ +..|.-.|+ -|..+..|.+|. +..|.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 344444443 4568999999999999988776651 1 2233 455655553 244455555553 56677
Q ss_pred ceEEEEEE
Q 026973 142 TLHLVLRL 149 (230)
Q Consensus 142 ~i~l~~~~ 149 (230)
.+++++..
T Consensus 98 ~~~L~L~~ 105 (108)
T smart00144 98 EPHLVLMT 105 (108)
T ss_pred CceEEEEe
Confidence 77777543
No 309
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=50.84 E-value=64 Score=21.09 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.7
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEE
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 120 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~--~~q~L~ 120 (230)
++....+.++.++|..++-..+.++++++. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 366778999999999999999999999864 455555
No 310
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=50.45 E-value=65 Score=20.59 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhcccccCCceEE
Q 026973 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
..+.|+.+.....+-+-.++++.+|+...-++. .|--.....+..+.-++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 456788888888888888999999998887774 566778888888888888888765
No 311
>PRK01777 hypothetical protein; Validated
Probab=49.81 E-value=68 Score=21.71 Aligned_cols=62 Identities=6% Similarity=0.072 Sum_probs=40.7
Q ss_pred CEEEEEcc-C--CcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-------eeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-------QRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~-~--g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-------q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|.|-.- . .....+++.++.||.++=. ..||+... -.+..+|+...- ++-+.+|+++.+.
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~----~sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIy 74 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIR----ASGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIY 74 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHH----HcCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEe
Confidence 45555542 2 2357889999999999877 45776652 245567766654 4456778888776
Q ss_pred e
Q 026973 71 L 71 (230)
Q Consensus 71 ~ 71 (230)
-
T Consensus 75 r 75 (95)
T PRK01777 75 R 75 (95)
T ss_pred c
Confidence 4
No 312
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=49.59 E-value=48 Score=21.28 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=36.0
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEE
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~ 197 (230)
|.+..++.+...+++.+..|+.+--.+.-+.-|+.|+-+..+.
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~ 44 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFR 44 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEE
Confidence 4677788889999999999999988888888899888776653
No 313
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=49.18 E-value=41 Score=22.60 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=34.0
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcc
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 125 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~ 125 (230)
...+.+.|++..|=.++|+.++..+++++...+-. ..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 45789999999999999999999999999887654 66644
No 314
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=48.65 E-value=71 Score=20.49 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=46.5
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.|+..+....+-+-.++++.+|+...-++ -.|.-+....+-..+-++.|+.+.+..|-
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 4578888888888888899999998877666 56667777778888778888887776543
No 315
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=48.53 E-value=39 Score=21.74 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=32.0
Q ss_pred chHHHHHHHhccccCCCCCceEEE--EcCeecCCCCccccccCCCCCEE
Q 026973 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTL 219 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d~~~L~~~~i~~~~~i 219 (230)
.+.++|+.+.+++++++....+++ -.|.+.+|..-+.. +.++..+
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l 65 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTEL 65 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEE
Confidence 479999999999999987666665 47888776544332 3455544
No 316
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=48.12 E-value=15 Score=30.94 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=51.2
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhcccc-CCCCCceEEEEcC---eec--CCCCccccccCCCCCEE
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTL 219 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~l~~~g---~~l--~d~~~L~~~~i~~~~~i 219 (230)
.|.|+.++|+.....+-..++|..|-.-+.... |-+-.++.|+..- +.| ..+.||.++||++..++
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~~ 350 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSETL 350 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCccccc
Confidence 588999999988888777889999887777765 4566778888543 444 46689999999998763
No 317
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=47.74 E-value=7.6 Score=32.93 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=42.8
Q ss_pred eccCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccH
Q 026973 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 83 ~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL 132 (230)
..+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+.++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456777777777 77789999999999999999999999999999887443
No 318
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=47.57 E-value=57 Score=22.56 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.3
Q ss_pred eEEEeeccceEEEEeeccchHHHHHHHhccccCCCC
Q 026973 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 190 (230)
+.+-..+|++..++|..-.+-.++++++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 455667899999999999999999999999999866
No 319
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=47.03 E-value=23 Score=23.29 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=33.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCC---CCeeEE-ecCcccc
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQLE 51 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~---~~q~l~-~~g~~L~ 51 (230)
+|+.+.+.++.++++.-+-++...+.|.|+ ..+++. ++|..+.
T Consensus 8 ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 789999999999999999999999988664 334444 5665443
No 320
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=46.83 E-value=39 Score=21.99 Aligned_cols=45 Identities=20% Similarity=0.469 Sum_probs=30.7
Q ss_pred chHHHHHHHhccccCCCCCceEEEE--cCeecCCCCccccccCCCCCEE
Q 026973 173 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTL 219 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~~L~~~~i~~~~~i 219 (230)
.+..+|+.+.+++++++.+..+|+. .|.+.+|..-+.. +.++..+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l 67 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVL 67 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEE
Confidence 5799999999999999988787764 6666665533322 3455444
No 321
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=45.68 E-value=88 Score=20.73 Aligned_cols=60 Identities=23% Similarity=0.358 Sum_probs=41.0
Q ss_pred EEEEeeccchHHHHHHHhcccc-CC--CC--C-ceEEEEcC--eecCCCCccccccCCCCCEEEEEEe
Q 026973 165 ITLEVESSDTIDNVKAKIQDKE-GI--PP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~-gi--~~--~-~q~l~~~g--~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.-+.|+..+|+.++=+++.-.. |. ++ . ..++.++| ..+..+.+.++.||.+-+.|.+.+.
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4577888999999988877754 42 22 3 34555788 8889999999999999999988764
No 322
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=44.92 E-value=47 Score=21.65 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=31.3
Q ss_pred chHHHHHHHhccccCCCCCceEEE--EcCeecCCCCccccccCCCCCEE
Q 026973 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTL 219 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d~~~L~~~~i~~~~~i 219 (230)
.+.++|+.+.+++++++....+++ -.|.+.+|..-++. +.++..+
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l 67 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVL 67 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEE
Confidence 479999999999999976666665 47777766543332 3445544
No 323
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=44.64 E-value=37 Score=25.35 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=33.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecCc
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~ 48 (230)
..+.+++.|++++|=.++|..|+..+|+.+..-.-+ ..|+
T Consensus 21 e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 21 SKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 357899999999999999999999999999776544 4443
No 324
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.43 E-value=15 Score=32.24 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=47.0
Q ss_pred EEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEE
Q 026973 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~ 222 (230)
++.+...|=.+|...|.++.|++....+.+.+|+.+.-.+||.+-|++.+....++
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~ 109 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVA 109 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHH
Confidence 34445567788999999999999998899999999999999999999887765443
No 325
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.95 E-value=38 Score=21.98 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=30.4
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
..+.+.|++..|=.++|+.++..+++.+...+-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999988877654
No 326
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=42.91 E-value=1.1e+02 Score=21.09 Aligned_cols=62 Identities=29% Similarity=0.333 Sum_probs=39.0
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh------CCCCC-CeeEEecCcc--ccCCccccccc-----cccccceeeeee
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKE------GIPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTLHLVLR 72 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~------gip~~-~q~l~~~g~~--L~d~~~l~~~~-----i~~~~~i~l~~~ 72 (230)
..+++.+++++|+.++.+.+-... .-+++ +-.|-..|+. |..+..|.+|. +..+..++|.+.
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 579999999999999988776651 12222 3445566643 55556666654 345555555543
No 327
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=40.81 E-value=33 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHhhhhhC
Q 026973 13 ITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
..++++.++|+.++|+.+-+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46889999999999999876643
No 328
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.57 E-value=1.9e+02 Score=23.06 Aligned_cols=144 Identities=15% Similarity=0.187 Sum_probs=69.3
Q ss_pred eeeeeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC--CcE-EE--EcCcc----------cCCCccH
Q 026973 68 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQR-LI--FAGKQ----------LEDGRTL 132 (230)
Q Consensus 68 ~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~--~q~-L~--~~g~~----------L~d~~tL 132 (230)
.+.+.......++|-..=.+.-.+.+....|+.++-.. .=|+.+. ... +. .+|+. +.....-
T Consensus 70 ~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~---AGG~~~~~~~~~~i~~~~~g~~~~~~idl~~l~~~g~~~ 146 (239)
T TIGR03028 70 TINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLAL---AGGVTPDGADVITLVREREGKIFRKQIDFPALFNPGGDN 146 (239)
T ss_pred EEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHH---cCCCCccCCCeEEEEEecCCeEEEEEEEHHHHHhcCCCc
Confidence 33333333455666543333334556666777775443 3344332 211 21 23432 2222334
Q ss_pred hhcccccCCceEEEEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCC----CCceEEEE---cCeecCCC
Q 026973 133 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----PDQQRLIF---AGKQLEDG 205 (230)
Q Consensus 133 ~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~----~~~q~l~~---~g~~l~d~ 205 (230)
.++-+++|+.|++.... .+++.-.-++.-.+.+.+..|+.+ .|..--|+. +....++. +|....-.
T Consensus 147 ~ni~L~~GD~I~V~~~~----~v~v~G~V~~pg~~~~~~~~tl~~---al~~aGG~~~~a~~~~v~i~R~~~~g~~~~~~ 219 (239)
T TIGR03028 147 ENILVAGGDIIYVDRAP----VFYIYGEVQRPGAYRLERNMTVMQ---ALAQGGGLTPRGTERGIRVMRRDDKGAVEEVS 219 (239)
T ss_pred CCcEEcCCCEEEEcCCc----cEEEEeEccCCeEEEeCCCCCHHH---HHHhcCCCCcccCcceEEEEEECCCCcEEEEe
Confidence 46778999998775322 234432223444566667777655 444444432 23344442 23221111
Q ss_pred CccccccCCCCCEEEEE
Q 026973 206 RTLADYNIQKESTLHLV 222 (230)
Q Consensus 206 ~~L~~~~i~~~~~i~l~ 222 (230)
..+.+ -+++||.|++-
T Consensus 220 ~~~~~-~l~~gDii~V~ 235 (239)
T TIGR03028 220 GELGD-LVQPDDVIYVR 235 (239)
T ss_pred cCCCc-ccCCCCEEEEe
Confidence 11222 48999999864
No 329
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=40.41 E-value=1e+02 Score=20.47 Aligned_cols=61 Identities=5% Similarity=0.079 Sum_probs=39.0
Q ss_pred eEEEEeeccchHHHHHHHhccccCCCCCc-eEEEEcCeec-CCCCccccccC--CCCCEEEEEEe
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLADYNI--QKESTLHLVLR 224 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~l~~~g~~l-~d~~~L~~~~i--~~~~~i~l~~~ 224 (230)
...+.++++.|+.++...|.++.++.+++ ..|+.++.-+ ..+.++.+..= .++..+++.+.
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys 81 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYC 81 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 34566899999999999999999987765 4444555323 33345533211 45566666553
No 330
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=39.71 E-value=82 Score=20.78 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=29.0
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026973 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
.+|..+-+.+++..|-.+|.+++.+....+..
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~ 38 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHND 38 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 47899999999999999999999999998763
No 331
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=39.71 E-value=1.2e+02 Score=20.62 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=35.7
Q ss_pred EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhh--hCCCCC----CeeEEecCcc--ccCCccccccc
Q 026973 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGKQ--LEDGRTLADYN 60 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~--~gip~~----~q~l~~~g~~--L~d~~~l~~~~ 60 (230)
|.|... .+..+++.++.++|+.+|-..+-.. .+..+. +-.|-..|+. |..+..|.+|.
T Consensus 19 v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 19 VSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp EEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 455555 4568999999999999998887776 222221 2344466743 55667777765
No 332
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=38.38 E-value=1.3e+02 Score=20.73 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.8
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~ 114 (230)
++|-..+|++..++|....+-.+++.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 455678999999999999999999999999999887
No 333
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=37.93 E-value=1.2e+02 Score=20.10 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=39.9
Q ss_pred EeeecCCCChHHHHHHHHHhHh-C--CCC--C-CcEEEEcC--cccCCCccHhhcccccCCceEEEE
Q 026973 89 ITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~-~--ip~--~-~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.-+.|+..+|+.++=++++... | +++ . ..++.++| +.+..+.++++.||.+-+.|.+..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 4567888999999999887764 3 333 2 34555788 888999999999999988887654
No 334
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=54 Score=27.77 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEEEcC---cccC--CCccHhhcccccCCc
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 142 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~ip~~~q~L~~~g---~~L~--d~~tL~~~~i~~~~~ 142 (230)
.|.|+.++|+.....+-.+++|..|-.-++... |.+-...+|+.+- +.|. .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488999999988888888899998877776665 4677778888654 4453 477999999998764
No 335
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.12 E-value=54 Score=21.66 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=30.8
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
...+.+.|++..+=.++|+.|+..+++.+...+-.
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 35799999999999999999999999998877654
No 336
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=37.10 E-value=42 Score=22.11 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=41.1
Q ss_pred eEEEEeeccchHHHHHHHhccccCC-CCCceEEE--EcCe--ecCCC---CccccccC--CCCCEEEEEEe
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGK--QLEDG---RTLADYNI--QKESTLHLVLR 224 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi-~~~~q~l~--~~g~--~l~d~---~~L~~~~i--~~~~~i~l~~~ 224 (230)
..++.|.+..|.+++-..++.++.+ .|+.+.|. .+|. .|.|+ +.+..+-. ..-.+.++++|
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~Pq~ika~L~~~~~~~~fhfvYr 85 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTYPQRIKAELHSRPQPNTFHFVYR 85 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccccceechhhccCCCCcceEEEEe
Confidence 4688999999999999999999987 67777765 3553 45444 23333322 23335666665
No 337
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.07 E-value=61 Score=21.11 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=32.6
Q ss_pred chHHHHHHHhccccCCCCCceEEE--EcCeecCCCCccccccCCCCCEEEE
Q 026973 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d~~~L~~~~i~~~~~i~l 221 (230)
.+.++|+.+.++.++++.+..+|+ -.|.+.++..-+.. +.++..+.+
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~ 69 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMV 69 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEE
Confidence 479999999999999987666664 57777766543332 446665543
No 338
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=36.96 E-value=20 Score=22.65 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=11.6
Q ss_pred CCccccccCCCCCEEEE
Q 026973 205 GRTLADYNIQKESTLHL 221 (230)
Q Consensus 205 ~~~L~~~~i~~~~~i~l 221 (230)
.+.|...|+++||+|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 46799999999999975
No 339
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=36.37 E-value=63 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=14.4
Q ss_pred cccCCCCCceEEEEcCeecCCC
Q 026973 184 DKEGIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 184 ~~~gi~~~~q~l~~~g~~l~d~ 205 (230)
+..|.|+-...|.++|..+.+.
T Consensus 22 ~v~g~P~p~i~W~k~g~~l~~~ 43 (95)
T cd05722 22 SAEGEPPPKIEWKKDGVLLNLV 43 (95)
T ss_pred ecccCCCCEEEEEECCeECccc
Confidence 3345666677787888777544
No 340
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=35.62 E-value=65 Score=23.70 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+++.+.|+..++=.++|+.|+..+++.+..-.
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVN 114 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVN 114 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEE
Confidence 479999999999999999999999999886544
No 341
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=35.15 E-value=97 Score=20.53 Aligned_cols=33 Identities=3% Similarity=0.262 Sum_probs=26.7
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
.-|+.+.|++++...|.++.++++++-.++|-+
T Consensus 20 flv~~~~tv~~~~~~lrk~L~l~~~~slflyvn 52 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLKLKASDSLFLYIN 52 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC
Confidence 458999999999999999999988764444433
No 342
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=35.02 E-value=24 Score=22.25 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCccccccCCCCCEEEEE
Q 026973 205 GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 205 ~~~L~~~~i~~~~~i~l~ 222 (230)
...|...|+++||+|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 467999999999999763
No 343
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=34.81 E-value=1.6e+02 Score=20.55 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.8
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026973 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
|+.+..--+++ +-.+.|+..+|+.++-+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 67777776665 56799999999999999999998854
No 344
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=34.62 E-value=45 Score=21.11 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=27.6
Q ss_pred CcHHHHHHHhhhhhCCCCCCeeEEecCccccCCcccc
Q 026973 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~ 57 (230)
.|+.||.+.-.+++|+++ .-.+.-+|.+.+|=..++
T Consensus 26 ~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~~IR 61 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA-TKVLNEDGAEIDDIDVIR 61 (69)
T ss_pred ccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEEEEE
Confidence 799999999999999984 445556787777744443
No 345
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=34.02 E-value=1.3e+02 Score=20.03 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEE
Q 026973 144 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (230)
Q Consensus 144 ~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~ 197 (230)
.+..+..|+..+. +.-.+.++++.|++.+-.-+.++.++.+++.-++|
T Consensus 3 ~v~fk~iG~aPil------k~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlY 50 (87)
T PF04110_consen 3 TVRFKAIGSAPIL------KQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLY 50 (87)
T ss_dssp EEEEEEETT----------S--EEEEETTSBTHHHHHHHHHHCT----SS-EEE
T ss_pred EEEEEecCCCccc------cCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEE
Confidence 4445555554332 33478889999999999999999988666554444
No 346
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=33.91 E-value=56 Score=21.38 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHhHhC---CCCCCcE-EE-EcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 94 ESSDTIDNVKAKIQDKEG---IPPDQQR-LI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 94 ~~~~tV~~lK~~i~~~~~---ip~~~q~-L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...+|+++|.+.+.++.. .--.... +. .+...+.+. ++-+++|++|.+..+..||
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeCCCCCC
Confidence 346799999999877664 1122122 22 333444433 4457889999888766554
No 347
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=33.47 E-value=84 Score=18.98 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=32.8
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccc
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l 56 (230)
|+|.+.+|+... ++.+.|+.|+=..|....+-..- .-..+|+..+-+..|
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl~~~L 50 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDLDHPL 50 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEETTSBB
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCCCCCc
Confidence 456667888776 88899999999999887642221 122677555444433
No 348
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=33.19 E-value=80 Score=19.91 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=16.5
Q ss_pred ccccCCCCCceEEEEcCeecC
Q 026973 183 QDKEGIPPDQQRLIFAGKQLE 203 (230)
Q Consensus 183 ~~~~gi~~~~q~l~~~g~~l~ 203 (230)
|+..|-|+-...|+.+|..++
T Consensus 5 C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 5 CEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred eeCcccCCCeEEEEECCeECC
Confidence 455688888899999888774
No 349
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=33.15 E-value=87 Score=21.22 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.5
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcC
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g 123 (230)
....+.+.|++.+|=.++|..+++.+++-+...+-+ ..|
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 345789999999999999999999999988777543 544
No 350
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=32.70 E-value=1e+02 Score=19.12 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=23.0
Q ss_pred ccHhhcccccCCceEEEEEEecceeeEEEeeccceEE
Q 026973 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 166 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~ 166 (230)
..|.+.|+.+|+.+.+.-+...+-.+.+.. +++.+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~-~~~~i~ 61 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKV-DGSRIA 61 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEE-TTEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEE
Confidence 468999999999999886654444444443 244443
No 351
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=32.13 E-value=25 Score=29.83 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=40.9
Q ss_pred eccceEEEEee-ccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCcc
Q 026973 160 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 160 ~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L 208 (230)
.+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+..+
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 44666666666 67789999999999999999999999999999887544
No 352
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=32.00 E-value=41 Score=23.80 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|+|.|.. +|..+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7888855 5899999999999998888743
No 353
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=31.76 E-value=40 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.3
Q ss_pred cccCCCccHhhcccccCCceEEEEEEe
Q 026973 124 KQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 124 ~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+..+|+++|++++++-|+.+.+.+.+.
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 556889999999999999999988754
No 354
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=31.67 E-value=1.1e+02 Score=25.84 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=45.3
Q ss_pred EEEEeeccchHHHHHHHhcccc--------------C-CCCCceEEEEcCeecCCCCcccccc---CCCCCEEEEEEecc
Q 026973 165 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 226 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~--------------g-i~~~~q~l~~~g~~l~d~~~L~~~~---i~~~~~i~l~~~~~ 226 (230)
..+.......|..+...|.+++ . .|.+...|+.+|++|+.+.||+... =+.++.|.|.+|..
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3455555567777777777776 2 3455678889999999999997654 36777887888865
Q ss_pred C
Q 026973 227 G 227 (230)
Q Consensus 227 ~ 227 (230)
+
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 3
No 355
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=31.65 E-value=52 Score=22.02 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=10.3
Q ss_pred CCCCCceEEEEcCeecCCC
Q 026973 187 GIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 187 gi~~~~q~l~~~g~~l~d~ 205 (230)
|-|+-...|..+|+.+.++
T Consensus 26 G~p~p~v~W~kdg~~l~~~ 44 (98)
T cd05762 26 GTQPITCTWMKFRKQIQEG 44 (98)
T ss_pred ccCCCceEEEECCEEecCC
Confidence 4455556666666655433
No 356
>PHA02090 hypothetical protein
Probab=31.56 E-value=7.3 Score=24.03 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=24.2
Q ss_pred EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE
Q 026973 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
|+-.|....+++-++-+...=-..+.-..|||.+.|+++
T Consensus 33 ksk~g~lrv~e~m~dg~~ktna~flgy~igip~~eq~~f 71 (79)
T PHA02090 33 KSKEGDLRVIEVMEDGGWKTNAEFLGYAIGIPVNEQKFF 71 (79)
T ss_pred hccCCceEEEEeccCCCccccceeeeeeeCccchHHHHH
Confidence 344566667777666655444444555667888888754
No 357
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=30.76 E-value=1e+02 Score=22.81 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=32.2
Q ss_pred EEEEEecC-CCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccc
Q 026973 12 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60 (230)
Q Consensus 12 ~~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~ 60 (230)
.+.+++.. .+.+.++++.+++.+-.+-+ . ..|+=+....|+++|-
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~--i--~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD--I--KEGKFIRTKPTVTDYA 121 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE--e--eeeEEeccCCchhhhh
Confidence 45567777 78899999999887743332 2 3477788888888873
No 358
>CHL00030 rpl23 ribosomal protein L23
Probab=30.58 E-value=90 Score=21.06 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=32.3
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCc
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 124 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~ 124 (230)
...+.+.|+.+.|=.++|+.|+..+++.+...+-. ..|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 35799999999999999999999999988777544 4443
No 359
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=30.19 E-value=1.1e+02 Score=21.45 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=26.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~ 38 (230)
+.|++...+|+..++++.++.|+.+.=+ ..|++.
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~----~~gi~i 34 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAH----ENDIEL 34 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHH----HcCCCC
Confidence 4677777889999999999999988755 455553
No 360
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=30.18 E-value=58 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=14.0
Q ss_pred ccCCCCCceEEEEcCeecCC
Q 026973 185 KEGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 185 ~~gi~~~~q~l~~~g~~l~d 204 (230)
..|.|+-...|..+|..+.+
T Consensus 8 ~~G~P~p~v~W~k~g~~l~~ 27 (74)
T cd05748 8 ISGRPTPTVTWSKDGKPLKL 27 (74)
T ss_pred EeeeCCCeEEEEECCEEcCC
Confidence 34677777888888877743
No 361
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=30.18 E-value=2.3e+02 Score=21.27 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=35.8
Q ss_pred ccccccccccccceeeeeeecCCeeeEEEeccCeeEeee--cCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcc
Q 026973 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~--v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~t 131 (230)
...+.+.+.....+.-++....-.-|.|...+|+.-.+- +..-..-.+|...+++....--..... -....-.+..+
T Consensus 64 eLFA~~P~~~~~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~-~~~~~~~~~~p 142 (160)
T PF07933_consen 64 ELFAQCPYDDYAAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEA-EEQSQAAESQP 142 (160)
T ss_dssp SS-EEEEE-SS--EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-----------------
T ss_pred ceEEECcccCCCceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhh-hhhhcccCCCC
Confidence 456677777776666667777778899988888765444 444446778888888887642111111 00111234556
Q ss_pred HhhcccccCCceEEEE
Q 026973 132 LADYNIQKESTLHLVL 147 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~ 147 (230)
-.||.+++|.+|++.+
T Consensus 143 ~~D~sLKeGetI~ini 158 (160)
T PF07933_consen 143 KKDYSLKEGETIKINI 158 (160)
T ss_dssp ----------------
T ss_pred ccCCcCCCCCEEEEec
Confidence 7899999999998764
No 362
>PRK08453 fliD flagellar capping protein; Validated
Probab=29.83 E-value=2e+02 Score=27.10 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhC--C--------CCCCcEEEEcCcccCCC------ccHhhcccccCCceEEEE
Q 026973 84 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLVL 147 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i--------p~~~q~L~~~g~~L~d~------~tL~~~~i~~~~~i~l~~ 147 (230)
.+|+.+.|+++...|+.+|..+|-...+ + ..+..+|...+...... .+|++..+..|.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 4589999999999999999999985332 1 11245666555544322 233444444433111112
Q ss_pred EEecceeeEEEeeccceEEEEe
Q 026973 148 RLRGGMQIFVKTLTGKTITLEV 169 (230)
Q Consensus 148 ~~~~~~~i~v~~~~g~~~~~~v 169 (230)
.-.+.+.|.++..+|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2234467777777776665444
No 363
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=29.45 E-value=1.6e+02 Score=19.10 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred cCCCcHHHHHHHhhhhhCCCCCCeeEE
Q 026973 18 ESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~~gip~~~q~l~ 44 (230)
..+.++.+|++.++..++++..+-..+
T Consensus 47 ~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 47 EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 456899999999999999988766554
No 364
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=29.07 E-value=1.4e+02 Score=20.32 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=42.0
Q ss_pred CeeeEEEec-cCeeEeeecCCCChHHHHHHHHHhHh--CCCCC----CcEEEEcCc--ccCCCccHhhcc-----cccCC
Q 026973 76 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKES 141 (230)
Q Consensus 76 ~~~v~v~~~-~g~~~~i~v~~~~tV~~lK~~i~~~~--~ip~~----~q~L~~~g~--~L~d~~tL~~~~-----i~~~~ 141 (230)
.+.|.|... .+..+.+.++.+.|+.++-..+-... +..+. +..|.-.|. -|..+.+|.+|. +..+.
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 345555555 56778999999999999988876662 22221 455655563 355666777764 45555
Q ss_pred ceEEEE
Q 026973 142 TLHLVL 147 (230)
Q Consensus 142 ~i~l~~ 147 (230)
.+++.+
T Consensus 96 ~~~L~L 101 (106)
T PF00794_consen 96 DPHLVL 101 (106)
T ss_dssp -EEEEE
T ss_pred CcEEEE
Confidence 565554
No 365
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=29.06 E-value=1.2e+02 Score=18.75 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=14.0
Q ss_pred ccccCCCCCceEEEEcCeecCC
Q 026973 183 QDKEGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 183 ~~~~gi~~~~q~l~~~g~~l~d 204 (230)
|...|.|+....|+++|+.+.+
T Consensus 5 C~v~g~P~p~v~W~k~~~~l~~ 26 (76)
T cd05736 5 CHAEGIPLPRLTWLKNGMDITP 26 (76)
T ss_pred eEeeecCCCEEEEEECCEECCC
Confidence 3445666667777777776644
No 366
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=28.94 E-value=1.3e+02 Score=19.28 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=26.0
Q ss_pred CEEEEEccCCc---EEEEEecCCCcHHHHHHHhhhhh
Q 026973 1 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 1 m~v~v~~~~g~---~~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
|+|+-|..++. .-.+.+..++||.++=.+|....
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 46777776553 45688899999999999998644
No 367
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=28.67 E-value=93 Score=22.74 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=56.0
Q ss_pred CCcHHHHHHHhhhhhCCCCCCeeEEecCccc------cCC-ccccccccccccceeeeeeecCCeeeEEEeccCeeEeee
Q 026973 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL------EDG-RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L------~d~-~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~ 92 (230)
-.+..|+|+.|.....+.-..-+++|+--+. +++ ..|+. +.....+.+.-.|.+.-++.|...+|..+.-+
T Consensus 12 vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~Cs~~eeD~~Ll~R--L~~~~NVTvRNDPDGRsRLNvNiFtGdviVTD 89 (153)
T PF08756_consen 12 VLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYPCSDDEEDLALLKR--LRSEPNVTVRNDPDGRSRLNVNIFTGDVIVTD 89 (153)
T ss_pred cCCHHHHHHHHHHHHhccCCCeeEEecccccccCCCCHHHHHHHHH--HHhCCCCeeecCCCccceeeeeEecCCEEEec
Confidence 4578999999999999999888888864221 112 22322 45556666777777777888888888877666
Q ss_pred cCCCChHHHHH
Q 026973 93 VESSDTIDNVK 103 (230)
Q Consensus 93 v~~~~tV~~lK 103 (230)
+...-+++.++
T Consensus 90 FgD~~~lgNI~ 100 (153)
T PF08756_consen 90 FGDEPPLGNIQ 100 (153)
T ss_pred CCCCCCccccc
Confidence 65544555544
No 368
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=28.44 E-value=94 Score=20.35 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=30.7
Q ss_pred chHHHHHHHhccccCCCCC--ceEEE--EcCeecCCCCccccccCCCCCEEE
Q 026973 173 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLH 220 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~--~q~l~--~~g~~l~d~~~L~~~~i~~~~~i~ 220 (230)
.+.++|+.+.+++++++.+ ..+|+ -.|.+.+|..-+.. +.++..+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~ 70 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFV 70 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEE
Confidence 4799999999999999843 25554 57777766544332 34555543
No 369
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=42 Score=23.24 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.0
Q ss_pred cc-CCccccccccccccceeee
Q 026973 50 LE-DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 50 L~-d~~~l~~~~i~~~~~i~l~ 70 (230)
|. +.++|+.|||.++..|.+.
T Consensus 90 L~d~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 90 LKDEDKTLKAAGIENETEISFF 111 (127)
T ss_pred ecCccchHHHhccCcchhhhhh
Confidence 44 4588999999988887664
No 370
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=27.76 E-value=26 Score=22.09 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=14.0
Q ss_pred cHHHHHHHhhhhhCCCCCC
Q 026973 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~ 40 (230)
|+.++.+.|.+.+|+++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~ 19 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVED 19 (70)
T ss_dssp -HHHHHHHHHHHTT--HHH
T ss_pred CHHHHHHHHHHHHCCCHHH
Confidence 7889999999999999853
No 371
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=26.59 E-value=89 Score=20.42 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
+.+..-+|.+|.++|+.+.-+..-|+.++..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 3455668999999999988777777766654
No 372
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=26.54 E-value=84 Score=19.08 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=18.4
Q ss_pred CEEEEEccCCcEEEEEe---cCCCcHHHH
Q 026973 1 MQIFVKTLTGKTITLEV---ESSDTIDNV 26 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v---~~~~tv~~l 26 (230)
|.|.+.+.+|..|.++. ..+.|+.++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~m 29 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNM 29 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHH
Confidence 67899999999999984 444455443
No 373
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=25.55 E-value=2.8e+02 Score=20.56 Aligned_cols=109 Identities=21% Similarity=0.395 Sum_probs=65.3
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceee----eeee-cCCeeeEEEeccCe
Q 026973 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL----VLRL-RGGMQIFVKTLTGK 87 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l----~~~~-~~~~~v~v~~~~g~ 87 (230)
|+-.+-.-+|...|-.++.+..|| .|.+.+|..|...- .||-..+.-+.. .+.. ...+.+.|+ -|+
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~--vGr 76 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVK--VGR 76 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEE--EeE
Confidence 444455567889999988888776 57888998887532 233333322111 1111 112334433 243
Q ss_pred eEeeecCC-CChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhc
Q 026973 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 88 ~~~i~v~~-~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~ 135 (230)
+.+++.. .+.+.++++...+.+.++ ..+ ..|+-+....|++||
T Consensus 77 -i~lele~~~~~ie~I~~iCee~lpf~---y~i-~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 77 -IILELEDEEDVIEKIREICEEVLPFG---YDI-KEGKFIRTKPTVTDY 120 (153)
T ss_pred -EEEEecCcHHHHHHHHHHHHHhCCCc---eEe-eeeEEeccCCchhhh
Confidence 6677777 667777777666655322 222 358888888999988
No 374
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=25.37 E-value=51 Score=27.67 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=38.9
Q ss_pred eEEEEeeccchHHHHHHHhccccC-C-CCCceEEEEcCeecCCCCccccc
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~g-i-~~~~q~l~~~g~~l~d~~~L~~~ 211 (230)
...+.++...||.+||+-+..+.+ + +..+..+++++..|.+..||.+.
T Consensus 165 ~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 165 RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 346778889999999999999998 3 44566778999999999999843
No 375
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=25.35 E-value=81 Score=22.90 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.3
Q ss_pred cCeecCCCCccccccCCCCCEEEEEEec
Q 026973 198 AGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 198 ~g~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
+.+-.+|+++|+..+++-||-|.+....
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~ 137 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITP 137 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecC
Confidence 3345689999999999999999987764
No 376
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=24.99 E-value=1.6e+02 Score=18.95 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=27.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
|+|.|=.. .....+.++.+.|=.++.+.|.+...=.
T Consensus 1 MeIkIGi~-~~~REl~ies~~s~dev~~~v~~Al~~~ 36 (74)
T PF11305_consen 1 MEIKIGIQ-NVARELVIESDQSADEVEAAVTDALADG 36 (74)
T ss_pred CeEEEeee-cCCceEEEecCCCHHHHHHHHHHHHhCC
Confidence 77777433 3566777788889999999999886544
No 377
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.94 E-value=71 Score=24.93 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCCCCc--EEEEcCcccCCCccHhhcccccCCceEEEEEEecceeeEEEeecc--ceEEEEeeccchHHHHHHHhccccC
Q 026973 112 IPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG 187 (230)
Q Consensus 112 ip~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~g 187 (230)
+|+... .+.|.+..+.+.+.+-...-.+.+.+.+.-..+.| .+.+...+. +...+.+++..+.+.+-...++.||
T Consensus 156 lPv~~~Ki~lSf~~p~l~~~~~lv~~~~~~~~~v~~Iga~ahg-~~~~ey~de~vsiSnYpLSaa~~CsKi~~~~Ee~wg 234 (236)
T KOG3073|consen 156 LPVNSRKIGLSFSGPKLSNVRDLVASLDDDDSVVFVIGAMAHG-KISVEYVDEKVSISNYPLSAALCCSKITSAFEEVWG 234 (236)
T ss_pred CCCCccEEeecCCCcccccHHhhccccCCCCCEEEEEeccccc-ccchhhhhhhcccccCcCcHHHHHHHHHHHHHHHhc
Confidence 355544 45588888876554444332233455555444444 122221111 1123344556677788888888777
Q ss_pred C
Q 026973 188 I 188 (230)
Q Consensus 188 i 188 (230)
|
T Consensus 235 I 235 (236)
T KOG3073|consen 235 I 235 (236)
T ss_pred c
Confidence 5
No 378
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=24.16 E-value=42 Score=20.99 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=10.9
Q ss_pred cCCCCCceEEEEcCeecCC
Q 026973 186 EGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 186 ~gi~~~~q~l~~~g~~l~d 204 (230)
.|.|.-.+.|..+|..+.+
T Consensus 11 ~G~P~p~i~W~k~g~~i~~ 29 (76)
T cd05867 11 EGIPTPNITWSINGAPIEG 29 (76)
T ss_pred eEeCCCeEEEEECCEECCC
Confidence 3555555666666665543
No 379
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=24.04 E-value=3.4e+02 Score=21.90 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCC--ccHhhcccccCCceEEE
Q 026973 95 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLV 146 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~--~tL~~~~i~~~~~i~l~ 146 (230)
.+.|+..|...+.+-+...+..|.|.|.|-....- -++.. ++.|+.+.+.
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltq--L~vGDgLRl~ 190 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQ--LRVGDGLRLY 190 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeE--eecCCcEEEE
Confidence 45689999999999999999999999988655432 22333 3555555543
No 380
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=23.73 E-value=1.5e+02 Score=18.96 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=12.6
Q ss_pred cCCCCCceEEEEcCeecCC
Q 026973 186 EGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 186 ~gi~~~~q~l~~~g~~l~d 204 (230)
.|.|.-...|+++|..+..
T Consensus 26 ~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 26 EGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CcCCCCEEEEEECCEECcc
Confidence 4556556777777777654
No 381
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=23.59 E-value=70 Score=19.98 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=12.4
Q ss_pred ccCCCCCceEEEEcCeecCC
Q 026973 185 KEGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 185 ~~gi~~~~q~l~~~g~~l~d 204 (230)
..|.|+....|..+|..+.+
T Consensus 10 ~~g~P~p~v~W~k~~~~l~~ 29 (73)
T cd05852 10 PKAAPKPKFSWSKGTELLVN 29 (73)
T ss_pred cceeCCCEEEEEeCCEeccc
Confidence 34666666777777765543
No 382
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=23.52 E-value=45 Score=20.12 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.4
Q ss_pred cHHHHHHHhhhhhCCCCCC
Q 026973 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~ 40 (230)
|+.++.+.|.+.+||++++
T Consensus 1 ~~~~I~~~Va~~~~i~~~~ 19 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPED 19 (60)
T ss_pred CHHHHHHHHHHHhCCCHHH
Confidence 5788999999999999864
No 383
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.42 E-value=1.5e+02 Score=19.34 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=28.8
Q ss_pred chHHHHHHHhccccCCCCCceEEE--EcCeecCCCCccccccCCCCCEE
Q 026973 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTL 219 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d~~~L~~~~i~~~~~i 219 (230)
.+.++|+.+.+++++++. ..+|+ -.|.+.+|..-+.. +.++..+
T Consensus 21 ~sL~eL~~K~~~~l~l~~-~~~lvL~eDGT~Vd~EeyF~t--Lp~nt~l 66 (79)
T cd06538 21 DSLEDLLNKVLDALLLDC-ISSLVLDEDGTGVDTEEFFQA--LADNTVF 66 (79)
T ss_pred CCHHHHHHHHHHHcCCCC-ccEEEEecCCcEEccHHHHhh--CCCCcEE
Confidence 479999999999999853 34444 57777766543332 3344444
No 384
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=23.32 E-value=2.2e+02 Score=18.37 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=34.1
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
|.+..++.+.-.+++.+..|+.+--.+.-+..|+.++.....
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~ 43 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVF 43 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEE
Confidence 345567777788999999999999999999999988765555
No 385
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=23.25 E-value=1.4e+02 Score=21.88 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=50.3
Q ss_pred ecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcc------------HhhcccccCCceEEEEEEecceeeEEEe
Q 026973 92 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 92 ~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~t------------L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
..-|+..|..|-.+.+-.-.+..+.-.+..+|+.|++... |..|.+.+|+.=...-...+|-++.+..
T Consensus 20 t~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~t 99 (149)
T PF10787_consen 20 TSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDT 99 (149)
T ss_pred ecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEe
Confidence 3335556777777766666677778888899999876443 4567777777533333445667778887
Q ss_pred eccce-EEEE
Q 026973 160 LTGKT-ITLE 168 (230)
Q Consensus 160 ~~g~~-~~~~ 168 (230)
..|+. ..+-
T Consensus 100 KkGK~dv~f~ 109 (149)
T PF10787_consen 100 KKGKKDVTFF 109 (149)
T ss_pred ccCcceeEEE
Confidence 77653 3433
No 386
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=23.08 E-value=1.3e+02 Score=27.09 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=38.1
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|+|..-+|+++.|+..... .=.+.=|.+.+||+.+.... |..-.|..+.+|.+.+-.
T Consensus 443 ~~~i~l~~g~~~~I~a~n~s-------------~~n~YIqsv~lNGk~~~~~~-i~~~~i~~GG~L~f~mg~ 500 (502)
T PF07971_consen 443 KVTIHLGNGKTFTIEAKNNS-------------AENIYIQSVTLNGKPLTRPW-ITHDDIMNGGTLEFEMGD 500 (502)
T ss_dssp EEEEE-CCC-EEEEE-TT-B-------------TTB-EEEEEEETTEEE-SSE-EEHHHHHC-EEEEEEEES
T ss_pred eEEEEcCCCCEEEEEecCCC-------------CCCceEeEEEECCEECcCCE-EeHHHHhCCCEEEEEeCC
Confidence 47787778999999987554 11144689999999998776 666778888888876543
No 387
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=23.07 E-value=1.3e+02 Score=23.02 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=9.5
Q ss_pred CCeeeEEEeccCeeEeeecC
Q 026973 75 GGMQIFVKTLTGKTITLEVE 94 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~ 94 (230)
++|.+.+...+|+.+.++++
T Consensus 106 eg~~v~v~~~~~~~i~v~lP 125 (184)
T TIGR00038 106 ENMEVSVTFYNGEPIGVELP 125 (184)
T ss_pred CCCEEEEEEECCEEEEEECC
Confidence 34445555455554444443
No 388
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=22.94 E-value=71 Score=20.76 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCCC
Q 026973 175 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGQ 229 (230)
Q Consensus 175 V~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g~ 229 (230)
-++. +.+-+++++.+++...+... +---..+|-+.|+.|.++.+ ..+|.
T Consensus 23 ~eE~-~~vLk~l~i~~~qLPkI~~~-----DPva~~lgak~GdvVkIvRkS~TaGe 72 (80)
T COG2012 23 EEEA-KEVLKELGIEPEQLPKIKAS-----DPVAKALGAKPGDVVKIVRKSPTAGE 72 (80)
T ss_pred HHHH-HHHHHHhCCCHHHCCccccc-----ChhHHHccCCCCcEEEEEecCCCCCc
Confidence 3444 45666778888877665432 22356789999999998887 45554
No 389
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=22.74 E-value=1.5e+02 Score=18.48 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=16.3
Q ss_pred ccccCCCCCceEEEEcCeecCC
Q 026973 183 QDKEGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 183 ~~~~gi~~~~q~l~~~g~~l~d 204 (230)
|...|.|+-...|..+|..+..
T Consensus 5 C~~~G~P~P~v~W~k~g~~l~~ 26 (77)
T cd05733 5 CEAKGNPPPTFSWTRNGTHFDP 26 (77)
T ss_pred eeCcccCCCeEEEEECCeECCC
Confidence 4456778778999888887753
No 390
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.15 E-value=2.3e+02 Score=18.26 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=40.2
Q ss_pred eeccchHHHHHHHhccccCCCCCceEEE-EcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 169 VESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 169 v~~~~tV~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+.+....-.+-+--.+++..|+..-.++ -.|.-....++-...-++.|+.++++-|-+=|
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 4444444333334455567888776666 45555677777777788999999998886655
No 391
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=22.03 E-value=86 Score=26.37 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=38.8
Q ss_pred eeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCccHhhcc
Q 026973 90 TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~--ip~~~q~L~~~g~~L~d~~tL~~~~ 136 (230)
.+.++...||..||.-+..+.+ -+..+..+++++..|.+..||.+.-
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhh
Confidence 4677888999999999999998 3455667889999999999998643
No 392
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=20.91 E-value=1.7e+02 Score=21.90 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=33.1
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcc
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 125 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~ 125 (230)
..+.+.|++..|=.++|..|+..+++.+...+-. ..|+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~ 62 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKP 62 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcc
Confidence 4699999999999999999999999999887655 45543
No 393
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=20.79 E-value=1.3e+02 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.5
Q ss_pred CCCCCceEEEEcCeecC
Q 026973 187 GIPPDQQRLIFAGKQLE 203 (230)
Q Consensus 187 gi~~~~q~l~~~g~~l~ 203 (230)
|.|.-...|.++|..+.
T Consensus 29 g~P~p~v~W~k~g~~l~ 45 (92)
T cd05747 29 GEPAPTVTWMREGQIIV 45 (92)
T ss_pred ecCCCEEEEEECCEECC
Confidence 33433445545554443
No 394
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=20.50 E-value=1.2e+02 Score=18.08 Aligned_cols=37 Identities=16% Similarity=0.423 Sum_probs=25.1
Q ss_pred HHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 25 ~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|++.+.+..|+++ ..++.+..+.++|+.+=..+.+.
T Consensus 2 ~l~~~~~~~l~~~~---------~~i~~~~~~~~lG~DSl~~~~l~ 38 (67)
T PF00550_consen 2 QLREIIAEVLGVDP---------EEIDPDTDFFDLGLDSLDAIELV 38 (67)
T ss_dssp HHHHHHHHHHTSSG---------GCTSTTSBTTTTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCcCH---------hhCCCCCCHHHhCCchHHHHHHH
Confidence 57777888888666 35677788888888654444443
No 395
>PRK00529 elongation factor P; Validated
Probab=20.48 E-value=2e+02 Score=22.09 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=9.7
Q ss_pred CCeeeEEEeccCeeEeeecC
Q 026973 75 GGMQIFVKTLTGKTITLEVE 94 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~ 94 (230)
++|.+.+...+++.+.++++
T Consensus 107 eg~~v~v~~~~~~~i~v~lP 126 (186)
T PRK00529 107 EGMEVTVVFYNGEPISVELP 126 (186)
T ss_pred CCCEEEEEEECCEEEEEECC
Confidence 34555555555554444443
No 396
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.40 E-value=1.7e+02 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred ecCCeeeEEEeccCeeEeeecCCCChHHHH
Q 026973 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNV 102 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~l 102 (230)
.++.++|++...+|..+.+++....|+.+.
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLea 61 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHA 61 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHH
No 397
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=20.30 E-value=1.7e+02 Score=18.76 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=13.3
Q ss_pred ccCCCCC-ceEEEEcCeecCC
Q 026973 185 KEGIPPD-QQRLIFAGKQLED 204 (230)
Q Consensus 185 ~~gi~~~-~q~l~~~g~~l~d 204 (230)
..|.|.- ...|.++|..+.+
T Consensus 22 a~G~P~P~~I~W~k~g~~l~~ 42 (81)
T cd05749 22 AVGPPEPVEILWWQGGSPLGD 42 (81)
T ss_pred eeeecCCeEEEEEECCEECCC
Confidence 3467655 5778788777653
No 398
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=20.16 E-value=1.6e+02 Score=18.16 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.2
Q ss_pred cccCCCCCceEEEEcCeecCCC
Q 026973 184 DKEGIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 184 ~~~gi~~~~q~l~~~g~~l~d~ 205 (230)
+..|.|+-...|+++|+.+..+
T Consensus 6 ~v~G~P~P~v~W~k~g~~l~~~ 27 (70)
T cd05864 6 KYYGYPPPEVKWYKNGQLIVLN 27 (70)
T ss_pred EEEEeCCCEEEEEECCEECCCC
Confidence 3457888889999999988654
No 399
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=20.08 E-value=1e+02 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=13.5
Q ss_pred CCCCCceEEEEcCeecCC
Q 026973 187 GIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 187 gi~~~~q~l~~~g~~l~d 204 (230)
|.|+-.+.|+++|..+..
T Consensus 30 G~P~P~i~W~k~g~~l~~ 47 (94)
T cd05848 30 GNPVPTYRWLRNGTEIDT 47 (94)
T ss_pred ecCCCEEEEEECCeECcc
Confidence 677777888888887753
No 400
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=20.03 E-value=5.3e+02 Score=21.64 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|+++..+|+...+++.+++|+.+.=.
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~ 30 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDAAL 30 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHH
Confidence 566655688999999999999998754
Done!