Query 026973
Match_columns 230
No_of_seqs 298 out of 2399
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 3.9E-39 1.3E-43 242.0 17.2 153 1-153 3-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 1.9E-38 6.5E-43 241.1 15.3 152 1-152 21-172 (172)
3 3rt3_B Ubiquitin-like protein 100.0 1.3E-37 4.4E-42 233.8 16.7 154 76-229 2-158 (159)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1.2E-37 4.3E-42 236.6 15.4 155 74-228 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 5.7E-37 1.9E-41 228.6 17.1 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 6E-36 2.1E-40 223.0 16.7 152 77-228 1-152 (152)
7 2kdi_A Ubiquitin, vacuolar pro 99.8 5.4E-22 1.8E-26 139.8 3.2 101 1-101 10-113 (114)
8 3phx_B Ubiquitin-like protein 99.8 1.2E-20 4.2E-25 124.5 9.0 74 1-74 5-78 (79)
9 3plu_A Ubiquitin-like modifier 99.8 1.2E-20 4.2E-25 125.6 8.2 70 1-70 22-91 (93)
10 2kk8_A Uncharacterized protein 99.8 1.3E-20 4.5E-25 125.5 8.0 73 1-73 11-84 (84)
11 4fbj_B NEDD8; effector-HOST ta 99.8 2.7E-20 9.2E-25 125.3 8.5 76 1-76 1-76 (88)
12 1yx5_B Ubiquitin; proteasome, 99.8 4.9E-20 1.7E-24 126.7 9.2 91 1-91 1-91 (98)
13 2lxa_A Ubiquitin-like protein 99.8 4.1E-20 1.4E-24 123.4 6.8 73 1-73 2-78 (87)
14 2kdi_A Ubiquitin, vacuolar pro 99.8 8E-21 2.7E-25 133.8 2.8 104 74-177 7-113 (114)
15 1ndd_A NEDD8, protein (ubiquit 99.8 1.9E-19 6.3E-24 117.8 9.0 75 1-75 1-75 (76)
16 1uh6_A Ubiquitin-like 5; beta- 99.8 6.5E-20 2.2E-24 124.5 7.0 71 1-71 29-99 (100)
17 4eew_A Large proline-rich prot 99.8 8.6E-20 2.9E-24 123.0 7.3 88 60-148 1-88 (88)
18 3v6c_B Ubiquitin; structural g 99.8 1.4E-19 4.8E-24 122.6 8.3 73 1-73 18-90 (91)
19 3phx_B Ubiquitin-like protein 99.8 2.3E-19 7.8E-24 118.4 8.9 77 151-227 3-79 (79)
20 2faz_A Ubiquitin-like containi 99.8 1.6E-19 5.5E-24 118.8 8.1 73 1-73 3-77 (78)
21 4dwf_A HLA-B-associated transc 99.8 1.9E-19 6.5E-24 121.7 8.6 74 1-75 6-79 (90)
22 3plu_A Ubiquitin-like modifier 99.8 1.3E-19 4.4E-24 120.6 7.5 78 69-146 14-91 (93)
23 2hj8_A Interferon-induced 17 k 99.8 1.7E-19 5.9E-24 121.4 8.0 74 1-74 5-78 (88)
24 1sif_A Ubiquitin; hydrophobic 99.8 2.4E-19 8.2E-24 120.6 8.5 75 1-75 10-84 (88)
25 3a9j_A Ubiquitin; protein comp 99.8 3.7E-19 1.3E-23 116.4 9.2 75 1-75 1-75 (76)
26 3dbh_I NEDD8; cell cycle, acti 99.8 2E-19 6.9E-24 121.1 8.1 75 1-75 13-87 (88)
27 4hcn_B Polyubiquitin, ubiquiti 99.8 2.9E-19 1E-23 122.6 8.6 75 1-75 23-97 (98)
28 4fbj_B NEDD8; effector-HOST ta 99.8 2.1E-19 7.2E-24 120.9 7.7 77 153-229 1-77 (88)
29 4eew_A Large proline-rich prot 99.8 3.4E-19 1.1E-23 120.0 8.4 88 136-224 1-88 (88)
30 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.6E-19 1.6E-23 121.3 9.1 79 1-79 2-80 (96)
31 3n3k_B Ubiquitin; hydrolase, p 99.8 3.3E-19 1.1E-23 119.2 8.1 74 1-74 4-77 (85)
32 2uyz_B Small ubiquitin-related 99.8 2.8E-19 9.5E-24 118.0 7.3 75 1-75 4-78 (79)
33 1sif_A Ubiquitin; hydrophobic 99.8 3.8E-19 1.3E-23 119.7 7.7 80 151-230 8-87 (88)
34 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 5.4E-19 1.9E-23 118.7 8.3 75 1-75 8-82 (87)
35 2dzi_A Ubiquitin-like protein 99.8 7.4E-19 2.5E-23 116.4 8.8 73 1-73 8-80 (81)
36 3mtn_B UBA80, ubcep1, ubiquiti 99.8 6.6E-19 2.2E-23 117.8 8.6 74 1-74 4-77 (85)
37 4ajy_B Transcription elongatio 99.8 5E-19 1.7E-23 123.0 8.1 73 1-73 1-81 (118)
38 1uel_A HHR23B, UV excision rep 99.8 1.3E-18 4.4E-23 118.7 9.7 73 1-73 1-76 (95)
39 3l0w_B Monoubiquitinated proli 99.8 8.8E-19 3E-23 131.7 9.6 124 1-128 1-128 (169)
40 4a20_A Ubiquitin-like protein 99.8 5.8E-19 2E-23 120.4 7.8 73 1-73 20-96 (98)
41 2wyq_A HHR23A, UV excision rep 99.8 9.8E-19 3.4E-23 116.9 8.7 74 1-74 6-82 (85)
42 3m62_B UV excision repair prot 99.8 3.8E-19 1.3E-23 123.7 6.8 74 1-74 2-75 (106)
43 2kan_A Uncharacterized protein 99.8 7.5E-19 2.6E-23 119.5 8.1 74 1-75 16-90 (94)
44 1ndd_A NEDD8, protein (ubiquit 99.8 9.5E-19 3.3E-23 114.4 8.2 76 153-228 1-76 (76)
45 1wy8_A NP95-like ring finger p 99.8 1.1E-18 3.9E-23 117.7 8.7 75 1-75 8-84 (89)
46 3dbh_I NEDD8; cell cycle, acti 99.8 6.7E-19 2.3E-23 118.5 7.5 78 151-228 11-88 (88)
47 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.2E-18 4.1E-23 119.2 8.4 78 152-229 1-78 (96)
48 3n3k_B Ubiquitin; hydrolase, p 99.8 1.1E-18 3.6E-23 116.7 8.0 78 152-229 3-80 (85)
49 1wyw_B Ubiquitin-like protein 99.8 8.2E-19 2.8E-23 120.1 7.5 75 1-75 22-96 (97)
50 3vdz_A Ubiquitin-40S ribosomal 99.8 1.4E-18 4.7E-23 121.9 8.6 75 1-75 36-110 (111)
51 4hcn_B Polyubiquitin, ubiquiti 99.8 1.1E-18 3.8E-23 119.7 7.8 78 151-228 21-98 (98)
52 3a9j_A Ubiquitin; protein comp 99.8 1.9E-18 6.5E-23 113.0 8.6 76 153-228 1-76 (76)
53 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2E-18 6.9E-23 115.9 8.8 79 151-229 6-84 (87)
54 2uyz_B Small ubiquitin-related 99.8 1.1E-18 3.8E-23 115.0 7.4 76 153-228 4-79 (79)
55 2fnj_B Transcription elongatio 99.8 1.1E-18 3.8E-23 121.8 7.7 72 1-72 1-80 (118)
56 1yx5_B Ubiquitin; proteasome, 99.8 1.4E-18 4.7E-23 119.4 8.0 90 77-166 1-90 (98)
57 3q3f_A Ribonuclease/ubiquitin 99.8 8.4E-19 2.9E-23 133.2 7.6 82 1-82 106-187 (189)
58 3b1l_X E3 ubiquitin-protein li 99.6 3.6E-20 1.2E-24 121.4 0.0 74 1-74 1-74 (76)
59 2l7r_A Ubiquitin-like protein 99.8 1.6E-18 5.5E-23 117.7 7.9 73 1-75 20-92 (93)
60 2bwf_A Ubiquitin-like protein 99.8 2.3E-18 7.9E-23 112.9 8.4 72 1-73 5-76 (77)
61 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.5E-18 8.5E-23 114.9 8.3 78 152-229 3-80 (85)
62 2hj8_A Interferon-induced 17 k 99.8 1.6E-18 5.6E-23 116.6 7.2 79 151-229 3-81 (88)
63 2kk8_A Uncharacterized protein 99.7 3.2E-18 1.1E-22 113.9 7.9 74 75-148 9-83 (84)
64 1wyw_B Ubiquitin-like protein 99.7 2.7E-18 9.1E-23 117.6 7.7 79 150-228 19-97 (97)
65 2ojr_A Ubiquitin; lanthide-bin 99.7 2.1E-18 7.2E-23 121.0 7.3 92 137-228 12-111 (111)
66 1v2y_A 3300001G02RIK protein; 99.7 1.2E-18 4.2E-23 119.8 5.5 75 1-75 8-98 (105)
67 1ttn_A DC-UBP, dendritic cell- 99.7 3.6E-18 1.2E-22 118.8 7.6 74 1-74 24-97 (106)
68 2kan_A Uncharacterized protein 99.7 5.5E-18 1.9E-22 115.2 8.3 78 151-229 14-92 (94)
69 1wy8_A NP95-like ring finger p 99.7 8.7E-18 3E-22 113.3 9.2 80 151-230 6-87 (89)
70 3vdz_A Ubiquitin-40S ribosomal 99.7 6.1E-18 2.1E-22 118.5 8.7 77 152-228 35-111 (111)
71 1wgd_A Homocysteine-responsive 99.7 5.2E-18 1.8E-22 115.3 7.8 74 1-74 8-87 (93)
72 4ajy_B Transcription elongatio 99.7 8.3E-18 2.9E-22 116.8 8.6 77 153-230 1-85 (118)
73 2l7r_A Ubiquitin-like protein 99.7 4E-18 1.4E-22 115.8 6.8 78 149-228 16-93 (93)
74 3v6c_B Ubiquitin; structural g 99.7 5.8E-18 2E-22 114.6 7.5 76 74-149 15-90 (91)
75 1yqb_A Ubiquilin 3; structural 99.7 6.6E-18 2.3E-22 116.1 7.7 74 1-75 23-96 (100)
76 2ojr_A Ubiquitin; lanthide-bin 99.7 1.3E-17 4.4E-22 117.0 9.2 75 1-75 36-110 (111)
77 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.1E-17 3.7E-22 115.3 8.7 73 1-74 26-98 (101)
78 2fnj_B Transcription elongatio 99.7 7.5E-18 2.6E-22 117.6 7.7 77 153-230 1-85 (118)
79 1uh6_A Ubiquitin-like 5; beta- 99.7 6E-18 2E-22 114.9 7.0 72 75-146 27-98 (100)
80 1wx8_A Riken cDNA 4931431F19; 99.7 5.3E-18 1.8E-22 116.0 6.6 74 1-75 18-91 (96)
81 2faz_A Ubiquitin-like containi 99.7 1.5E-17 5.1E-22 109.3 8.5 75 151-225 1-77 (78)
82 2lxa_A Ubiquitin-like protein 99.7 7.7E-18 2.6E-22 112.3 6.9 74 77-150 2-79 (87)
83 4dwf_A HLA-B-associated transc 99.7 1.7E-17 6E-22 112.0 8.6 78 151-229 4-81 (90)
84 2dzi_A Ubiquitin-like protein 99.7 2.8E-17 9.4E-22 108.8 8.6 75 75-149 6-80 (81)
85 1we6_A Splicing factor, putati 99.7 1.5E-17 5.2E-22 116.6 7.7 75 1-75 28-106 (111)
86 3l0w_B Monoubiquitinated proli 99.7 1.4E-17 5E-22 125.0 8.0 82 77-158 1-82 (169)
87 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2.5E-17 8.6E-22 115.3 8.5 74 1-74 17-100 (116)
88 3m63_B Ubiquitin domain-contai 99.7 5.3E-18 1.8E-22 116.7 4.9 93 53-148 7-99 (101)
89 1wju_A NEDD8 ultimate buster-1 99.7 2.3E-17 7.9E-22 112.0 7.9 75 154-229 17-95 (100)
90 3u5e_m 60S ribosomal protein L 99.7 6E-19 2E-23 126.9 0.0 74 1-74 1-74 (128)
91 1j8c_A Ubiquitin-like protein 99.7 3.1E-17 1.1E-21 117.1 8.7 73 1-74 33-105 (125)
92 2wyq_A HHR23A, UV excision rep 99.7 4.1E-17 1.4E-21 109.0 8.4 77 74-150 3-82 (85)
93 4dbg_A Ranbp-type and C3HC4-ty 99.7 3.9E-17 1.3E-21 111.7 8.3 73 1-73 25-100 (105)
94 1wx7_A Ubiquilin 3; ubiquitin- 99.7 3E-17 1E-21 114.2 7.9 73 1-74 18-90 (106)
95 1wgd_A Homocysteine-responsive 99.7 3.2E-17 1.1E-21 111.3 7.7 79 151-229 6-90 (93)
96 1wju_A NEDD8 ultimate buster-1 99.7 3.7E-17 1.2E-21 111.0 7.8 68 3-70 18-89 (100)
97 1v5o_A 1700011N24RIK protein; 99.7 2.7E-17 9.4E-22 113.5 7.2 74 1-74 8-86 (102)
98 3m63_B Ubiquitin domain-contai 99.7 9.2E-18 3.2E-22 115.5 4.7 72 1-73 29-100 (101)
99 4a20_A Ubiquitin-like protein 99.7 3.6E-17 1.2E-21 111.5 7.2 76 74-149 17-96 (98)
100 1we6_A Splicing factor, putati 99.7 3.8E-17 1.3E-21 114.6 7.6 79 151-229 26-108 (111)
101 1uel_A HHR23B, UV excision rep 99.7 6.9E-17 2.4E-21 110.1 8.7 74 77-150 1-77 (95)
102 2gow_A HCG-1 protein, ubiquiti 99.7 4.5E-17 1.5E-21 115.5 7.9 74 1-74 18-101 (125)
103 3u5c_f 40S ribosomal protein S 99.7 1.4E-18 4.7E-23 127.8 0.0 75 1-75 1-75 (152)
104 1se9_A Ubiquitin family; ubiqu 99.7 6E-17 2.1E-21 114.3 8.3 75 1-75 17-105 (126)
105 3q3f_A Ribonuclease/ubiquitin 99.7 2.8E-17 9.5E-22 124.8 6.9 84 75-158 104-187 (189)
106 2kd0_A LRR repeats and ubiquit 99.7 7.6E-17 2.6E-21 107.5 8.0 71 3-73 14-84 (85)
107 2kdb_A Homocysteine-responsive 99.7 3.7E-17 1.3E-21 111.7 6.6 70 1-70 24-99 (99)
108 3m62_B UV excision repair prot 99.7 3.4E-17 1.2E-21 113.8 6.3 74 77-150 2-75 (106)
109 1v5t_A 8430435I17RIK protein; 99.7 4.6E-17 1.6E-21 109.8 6.4 72 1-73 8-83 (90)
110 3b1l_X E3 ubiquitin-protein li 99.5 2.4E-18 8.1E-23 112.6 0.0 75 77-151 1-75 (76)
111 2bwf_A Ubiquitin-like protein 99.7 1.2E-16 4E-21 104.7 7.8 71 77-148 5-75 (77)
112 1wgg_A Ubiquitin carboxyl-term 99.7 6.3E-17 2.2E-21 110.3 6.7 71 1-73 8-79 (96)
113 1we7_A SF3A1 protein; structur 99.7 1.4E-16 5E-21 112.3 8.7 69 161-229 44-112 (115)
114 1wx8_A Riken cDNA 4931431F19; 99.7 6E-17 2E-21 110.7 6.0 77 152-229 17-93 (96)
115 1yqb_A Ubiquilin 3; structural 99.7 1.6E-16 5.6E-21 109.1 7.9 78 151-229 21-98 (100)
116 2dzm_A FAS-associated factor 1 99.7 1.3E-16 4.5E-21 108.8 7.0 73 1-73 9-82 (100)
117 1ttn_A DC-UBP, dendritic cell- 99.7 2.6E-16 8.8E-21 109.4 8.5 78 151-228 22-99 (106)
118 3u5e_m 60S ribosomal protein L 99.7 7E-18 2.4E-22 121.3 0.3 77 153-229 1-77 (128)
119 1j8c_A Ubiquitin-like protein 99.7 3E-16 1E-20 112.0 8.6 77 152-229 32-108 (125)
120 1x1m_A Ubiquitin-like protein 99.7 1.8E-16 6.2E-21 110.3 7.1 74 1-74 13-101 (107)
121 2klc_A Ubiquilin-1; ubiquitin- 99.7 4.3E-16 1.5E-20 107.3 8.9 82 146-228 19-100 (101)
122 1v2y_A 3300001G02RIK protein; 99.7 8E-17 2.7E-21 110.7 4.9 77 76-152 7-99 (105)
123 1wia_A Hypothetical ubiquitin- 99.7 2.5E-16 8.6E-21 107.4 7.3 71 1-74 8-79 (95)
124 1v5o_A 1700011N24RIK protein; 99.7 2.1E-16 7.3E-21 109.0 6.9 79 152-230 7-90 (102)
125 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.4E-16 1.5E-20 108.3 8.2 77 152-229 17-93 (106)
126 1wxv_A BAG-family molecular ch 99.6 3.9E-16 1.3E-20 105.7 7.8 72 1-73 8-85 (92)
127 2dzj_A Synaptic glycoprotein S 99.6 1.9E-16 6.6E-21 106.0 6.1 69 1-69 11-85 (88)
128 1we7_A SF3A1 protein; structur 99.6 5.5E-16 1.9E-20 109.3 8.7 78 75-152 24-111 (115)
129 1v86_A DNA segment, CHR 7, way 99.6 1.9E-16 6.4E-21 107.8 5.9 71 1-73 18-88 (95)
130 1wgh_A Ubiquitin-like 3, HCG-1 99.6 5.5E-16 1.9E-20 108.4 8.0 78 73-150 13-100 (116)
131 3u5c_f 40S ribosomal protein S 99.6 1.6E-17 5.6E-22 122.1 0.0 77 153-229 1-77 (152)
132 1se9_A Ubiquitin family; ubiqu 99.6 1.5E-15 5.1E-20 107.2 9.6 79 151-229 15-107 (126)
133 2daf_A FLJ35834 protein; hypot 99.6 7.7E-16 2.6E-20 106.3 7.6 81 2-82 17-98 (118)
134 2kjr_A CG11242; UBL, ubiquitin 99.6 1.2E-15 4.2E-20 103.4 7.8 70 1-70 16-93 (95)
135 2xzm_9 RPS31E; ribosome, trans 99.6 3.7E-17 1.3E-21 123.3 0.0 70 1-75 1-70 (189)
136 1v5t_A 8430435I17RIK protein; 99.6 2.5E-15 8.5E-20 101.3 8.7 74 75-149 6-83 (90)
137 4dbg_A Ranbp-type and C3HC4-ty 99.6 2.2E-15 7.5E-20 103.0 8.2 73 76-148 24-99 (105)
138 2kdb_A Homocysteine-responsive 99.6 1.1E-15 3.9E-20 104.2 6.6 72 75-146 22-99 (99)
139 2kd0_A LRR repeats and ubiquit 99.6 2E-15 6.7E-20 100.6 7.2 70 79-148 14-83 (85)
140 2daf_A FLJ35834 protein; hypot 99.6 4.2E-15 1.4E-19 102.6 9.0 78 76-153 15-93 (118)
141 4b6w_A Tubulin-specific chaper 99.6 2.2E-15 7.7E-20 100.2 7.3 72 2-73 4-84 (86)
142 3ai5_A Yeast enhanced green fl 99.6 1.9E-15 6.4E-20 122.7 8.3 73 1-73 234-306 (307)
143 2gow_A HCG-1 protein, ubiquiti 99.6 2.8E-15 9.6E-20 106.3 7.8 77 153-229 18-104 (125)
144 1x1m_A Ubiquitin-like protein 99.6 5.1E-15 1.8E-19 102.9 8.0 76 75-150 11-101 (107)
145 2kj6_A Tubulin folding cofacto 99.6 6.2E-15 2.1E-19 100.2 7.5 70 2-71 16-94 (97)
146 1wia_A Hypothetical ubiquitin- 99.6 1.3E-14 4.5E-19 98.8 9.0 75 151-228 6-81 (95)
147 2io1_B Small ubiquitin-related 99.6 1.1E-14 3.6E-19 98.5 8.1 79 152-230 7-85 (94)
148 1wf9_A NPL4 family protein; be 99.6 5.2E-15 1.8E-19 102.8 6.6 72 1-73 8-95 (107)
149 1wgg_A Ubiquitin carboxyl-term 99.6 3.4E-15 1.2E-19 101.7 5.3 73 75-149 6-79 (96)
150 1wxv_A BAG-family molecular ch 99.6 1.2E-14 4.1E-19 98.4 7.8 74 75-149 6-85 (92)
151 1t0y_A Tubulin folding cofacto 99.5 1.6E-14 5.5E-19 102.7 8.0 72 1-72 7-86 (122)
152 2kjr_A CG11242; UBL, ubiquitin 99.5 1.9E-14 6.7E-19 97.4 7.9 73 74-146 13-93 (95)
153 2io0_B Small ubiquitin-related 99.5 4.1E-14 1.4E-18 94.9 9.3 79 152-230 5-83 (91)
154 1v86_A DNA segment, CHR 7, way 99.5 9.3E-15 3.2E-19 99.4 6.1 72 75-148 16-87 (95)
155 1oqy_A HHR23A, UV excision rep 99.5 1E-14 3.5E-19 121.6 7.3 73 1-73 8-84 (368)
156 1v6e_A Cytoskeleton-associated 99.5 2E-14 6.8E-19 97.8 7.3 71 1-71 8-86 (95)
157 4b6w_A Tubulin-specific chaper 99.5 2.8E-14 9.6E-19 94.9 7.5 65 161-225 13-84 (86)
158 2dzm_A FAS-associated factor 1 99.5 1.8E-14 6E-19 98.3 6.5 74 76-149 8-82 (100)
159 2dzj_A Synaptic glycoprotein S 99.5 1.8E-14 6E-19 96.4 5.5 70 76-145 10-85 (88)
160 2kj6_A Tubulin folding cofacto 99.5 9.4E-14 3.2E-18 94.3 8.1 72 76-147 14-94 (97)
161 3ai5_A Yeast enhanced green fl 99.5 6.7E-14 2.3E-18 113.6 8.7 77 73-149 230-306 (307)
162 2kzr_A Ubiquitin thioesterase 99.5 5.6E-14 1.9E-18 93.8 5.7 71 1-72 1-77 (86)
163 2xzm_9 RPS31E; ribosome, trans 99.5 4.1E-15 1.4E-19 112.1 0.1 72 153-229 1-72 (189)
164 2io1_B Small ubiquitin-related 99.5 1.8E-13 6.3E-18 92.4 7.7 75 1-75 8-82 (94)
165 2d07_B Ubiquitin-like protein 99.4 3.1E-13 1.1E-17 91.2 8.2 77 152-228 17-93 (93)
166 1oqy_A HHR23A, UV excision rep 99.4 1.6E-13 5.3E-18 114.5 7.1 78 151-228 6-87 (368)
167 1v6e_A Cytoskeleton-associated 99.4 3.9E-13 1.3E-17 91.4 6.7 71 77-147 8-86 (95)
168 1wz0_A Ubiquitin-like protein 99.4 3.7E-13 1.3E-17 92.4 6.6 78 152-229 24-101 (104)
169 3shq_A UBLCP1; phosphatase, hy 99.4 2.4E-13 8.4E-18 111.7 6.8 74 1-75 6-82 (320)
170 1wm3_A Ubiquitin-like protein 99.4 9.6E-13 3.3E-17 84.6 7.8 70 1-70 2-71 (72)
171 2eke_C Ubiquitin-like protein 99.4 9.8E-13 3.4E-17 90.3 8.1 76 152-228 31-106 (106)
172 1wf9_A NPL4 family protein; be 99.4 3.6E-13 1.2E-17 93.5 5.9 72 76-148 7-94 (107)
173 2io0_B Small ubiquitin-related 99.4 1.5E-12 5.2E-17 87.2 8.4 75 1-75 6-80 (91)
174 1t0y_A Tubulin folding cofacto 99.4 1.8E-12 6.1E-17 92.1 8.2 72 153-224 7-86 (122)
175 2k8h_A Small ubiquitin protein 99.3 1.1E-12 3.6E-17 90.9 5.6 78 152-229 26-103 (110)
176 2kzr_A Ubiquitin thioesterase 99.3 1.6E-12 5.4E-17 86.7 6.1 70 77-147 1-76 (86)
177 2d07_B Ubiquitin-like protein 99.3 4.4E-12 1.5E-16 85.5 8.1 74 1-74 18-91 (93)
178 1wm3_A Ubiquitin-like protein 99.3 5.6E-12 1.9E-16 81.0 8.0 70 153-222 2-71 (72)
179 3a4r_A Nfatc2-interacting prot 99.3 6.3E-12 2.1E-16 82.2 8.1 70 1-70 8-78 (79)
180 2k8h_A Small ubiquitin protein 99.3 3.9E-12 1.3E-16 88.0 6.8 81 74-154 24-104 (110)
181 1wz0_A Ubiquitin-like protein 99.3 6.7E-12 2.3E-16 86.1 7.9 74 1-74 25-98 (104)
182 3a4r_A Nfatc2-interacting prot 99.3 2.3E-11 8E-16 79.5 8.8 73 74-146 5-78 (79)
183 2eke_C Ubiquitin-like protein 99.3 7.1E-12 2.4E-16 86.1 6.2 78 74-152 29-106 (106)
184 3shq_A UBLCP1; phosphatase, hy 99.3 4.5E-12 1.5E-16 104.2 5.7 75 76-151 5-82 (320)
185 1wjn_A Tubulin-folding protein 99.3 2.2E-11 7.4E-16 83.0 8.0 71 2-72 11-92 (97)
186 1wjn_A Tubulin-folding protein 99.1 2.7E-10 9.2E-15 77.5 8.7 65 160-224 20-92 (97)
187 3kyd_D Small ubiquitin-related 99.1 4E-10 1.4E-14 78.0 9.0 75 153-227 41-115 (115)
188 3tix_A Ubiquitin-like protein 99.1 2.2E-10 7.6E-15 85.4 6.6 77 153-230 58-134 (207)
189 3pge_A SUMO-modified prolifera 99.0 1.5E-09 5.1E-14 82.6 8.3 76 153-229 30-105 (200)
190 3kyd_D Small ubiquitin-related 99.0 3.2E-09 1.1E-13 73.5 8.3 72 1-72 41-112 (115)
191 3v7o_A Minor nucleoprotein VP3 98.9 1.1E-10 3.8E-15 88.2 0.4 79 151-230 20-98 (227)
192 3goe_A DNA repair protein RAD6 98.8 3.8E-08 1.3E-12 62.1 8.8 70 154-223 11-81 (82)
193 3pge_A SUMO-modified prolifera 98.8 8.8E-09 3E-13 78.4 7.0 78 74-152 27-104 (200)
194 3tix_A Ubiquitin-like protein 98.8 5.1E-09 1.8E-13 78.1 5.0 79 74-153 55-133 (207)
195 3goe_A DNA repair protein RAD6 98.7 6.1E-08 2.1E-12 61.2 8.1 71 77-147 10-81 (82)
196 2pjh_A Protein NPL4, nuclear p 98.7 8.9E-09 3.1E-13 67.1 4.3 69 1-70 5-78 (80)
197 2pjh_A Protein NPL4, nuclear p 98.7 2.4E-08 8.2E-13 65.1 5.1 71 75-146 3-78 (80)
198 3v7o_A Minor nucleoprotein VP3 98.6 3.4E-09 1.2E-13 80.2 0.1 82 71-153 16-97 (227)
199 2jxx_A Nfatc2-interacting prot 98.6 3E-07 1E-11 61.8 7.9 70 153-222 26-96 (97)
200 4efo_A Serine/threonine-protei 98.5 3.1E-07 1.1E-11 61.1 7.2 55 7-61 20-76 (94)
201 3ivf_A Talin-1; FERM domain, c 98.5 4.4E-06 1.5E-10 70.2 15.8 143 78-224 5-167 (371)
202 2al3_A TUG long isoform; TUG U 98.5 2.2E-07 7.4E-12 60.9 6.0 75 151-225 8-82 (90)
203 3uf8_A Ubiquitin-like protein 98.5 3.3E-07 1.1E-11 70.8 7.8 78 151-229 20-97 (209)
204 2jxx_A Nfatc2-interacting prot 98.5 6E-07 2.1E-11 60.3 8.0 73 74-146 23-96 (97)
205 3ix6_A TS, tsase, thymidylate 98.4 3.5E-08 1.2E-12 81.4 0.0 80 149-229 18-97 (360)
206 2l76_A Nfatc2-interacting prot 98.3 1.9E-06 6.4E-11 57.0 7.3 70 153-223 22-91 (95)
207 2al3_A TUG long isoform; TUG U 98.3 4E-06 1.4E-10 54.9 7.7 74 75-148 8-81 (90)
208 3ix6_A TS, tsase, thymidylate 98.3 1.2E-07 4E-12 78.3 -0.0 83 70-153 15-97 (360)
209 3ivf_A Talin-1; FERM domain, c 98.2 3.9E-05 1.3E-09 64.3 15.3 133 10-145 12-164 (371)
210 2kc2_A Talin-1, F1; FERM, adhe 98.2 2.6E-06 8.9E-11 59.9 5.9 70 3-72 14-122 (128)
211 2l76_A Nfatc2-interacting prot 98.2 8.6E-06 2.9E-10 53.8 7.9 72 76-148 21-92 (95)
212 3uf8_A Ubiquitin-like protein 98.1 5.6E-06 1.9E-10 63.9 6.8 82 71-153 16-97 (209)
213 2ylm_A Ubiquitin carboxyl-term 98.1 6.3E-05 2.2E-09 65.9 14.1 183 13-196 38-286 (530)
214 2kc2_A Talin-1, F1; FERM, adhe 98.1 4E-06 1.4E-10 59.0 5.1 71 154-224 13-122 (128)
215 4da1_A Protein phosphatase 1K, 98.1 5E-07 1.7E-11 76.5 0.0 76 153-229 31-106 (389)
216 4efo_A Serine/threonine-protei 98.1 1E-05 3.5E-10 53.7 6.3 65 160-224 21-88 (94)
217 4da1_A Protein phosphatase 1K, 97.9 1.6E-06 5.6E-11 73.3 0.0 82 75-157 29-110 (389)
218 3qx1_A FAS-associated factor 1 97.7 0.00014 4.8E-09 47.5 7.5 69 153-222 8-81 (84)
219 2bps_A YUKD protein; ubiquitin 97.7 8E-05 2.7E-09 48.0 6.0 68 2-69 6-80 (81)
220 2ylm_A Ubiquitin carboxyl-term 97.7 0.0015 5.2E-08 57.2 15.0 198 9-206 251-501 (530)
221 3qx1_A FAS-associated factor 1 97.7 0.00039 1.3E-08 45.3 8.6 69 2-71 9-82 (84)
222 2bps_A YUKD protein; ubiquitin 97.7 0.00013 4.5E-09 47.0 6.1 62 160-221 14-80 (81)
223 1wj4_A KIAA0794 protein; UBX d 97.4 0.00058 2E-08 47.9 7.5 72 74-146 41-117 (124)
224 2dzk_A UBX domain-containing p 97.3 0.0022 7.4E-08 43.9 8.7 70 2-71 15-89 (109)
225 2dzk_A UBX domain-containing p 97.3 0.0018 6.1E-08 44.4 8.2 73 75-147 12-89 (109)
226 1wj4_A KIAA0794 protein; UBX d 97.1 0.0022 7.5E-08 45.0 7.9 69 2-71 45-118 (124)
227 2daj_A KIAA0977 protein, COBL- 97.0 0.0011 3.9E-08 42.3 4.6 63 153-215 11-76 (91)
228 2l32_A Small archaeal modifier 96.9 0.0051 1.8E-07 38.9 7.4 60 1-70 1-60 (74)
229 2daj_A KIAA0977 protein, COBL- 96.9 0.0036 1.2E-07 40.0 6.3 66 74-139 8-76 (91)
230 2cr5_A Reproduction 8; UBX dom 96.8 0.0037 1.3E-07 42.8 6.6 71 153-224 24-98 (109)
231 4a3p_A Ubiquitin carboxyl-term 96.8 0.0043 1.5E-07 47.9 7.4 67 164-230 141-214 (217)
232 2cr5_A Reproduction 8; UBX dom 96.5 0.012 4.1E-07 40.2 7.6 69 2-71 25-97 (109)
233 3jyu_A Ubiquitin carboxyl-term 96.5 0.012 4.1E-07 45.8 8.5 67 164-230 153-226 (231)
234 1s3s_G P47 protein; AAA ATPase 96.2 0.013 4.4E-07 41.2 6.5 68 75-142 51-122 (127)
235 1s3s_G P47 protein; AAA ATPase 96.0 0.017 5.7E-07 40.6 6.0 65 2-66 54-122 (127)
236 1ryj_A Unknown; beta/alpha pro 95.7 0.18 6E-06 31.2 9.6 67 152-228 4-70 (70)
237 2juo_A GA-binding protein alph 95.6 0.069 2.4E-06 34.0 7.1 59 166-224 6-64 (89)
238 2juo_A GA-binding protein alph 95.6 0.038 1.3E-06 35.2 6.0 60 13-72 5-64 (89)
239 2r2o_A Plexin-B1; effector dom 95.6 0.051 1.8E-06 38.3 7.1 65 162-226 40-130 (138)
240 4e71_A Plexin-B2, MM1; transme 95.5 0.057 2E-06 36.6 6.9 63 162-224 23-110 (111)
241 4a3p_A Ubiquitin carboxyl-term 95.4 0.035 1.2E-06 42.8 6.4 64 88-151 141-211 (217)
242 2l32_A Small archaeal modifier 95.3 0.033 1.1E-06 35.1 5.0 67 77-153 1-67 (74)
243 1ryj_A Unknown; beta/alpha pro 94.9 0.13 4.5E-06 31.8 6.9 66 76-151 4-69 (70)
244 3h6n_A Plexin-D1; structural g 94.9 0.2 6.7E-06 34.8 8.1 65 161-225 15-105 (127)
245 3jyu_A Ubiquitin carboxyl-term 94.7 0.069 2.3E-06 41.5 6.2 63 89-151 154-223 (231)
246 4e71_A Plexin-B2, MM1; transme 94.6 0.11 3.8E-06 35.2 6.3 62 10-71 23-109 (111)
247 2r2o_A Plexin-B1; effector dom 94.3 0.15 5.1E-06 35.9 6.5 64 87-150 41-130 (138)
248 1oey_A P67-PHOX, neutrophil cy 94.1 0.11 3.9E-06 33.3 5.3 46 76-123 5-50 (83)
249 4e74_A Plexin-A4; RBD, structu 93.9 0.13 4.5E-06 35.2 5.5 64 162-225 26-115 (117)
250 1oey_A P67-PHOX, neutrophil cy 93.9 0.15 5.1E-06 32.7 5.4 45 3-47 6-50 (83)
251 3rpf_C Molybdopterin convertin 93.4 0.34 1.1E-05 30.2 6.6 68 1-73 1-71 (74)
252 2kvr_A Ubiquitin carboxyl-term 93.4 0.088 3E-06 37.0 4.1 35 12-46 57-91 (130)
253 1vjk_A Molybdopterin convertin 93.2 0.5 1.7E-05 31.2 7.6 72 75-151 8-97 (98)
254 3h6n_A Plexin-D1; structural g 93.2 0.65 2.2E-05 32.2 8.1 64 9-72 15-104 (127)
255 1tyg_B YJBS; alpha beta barrel 92.6 0.5 1.7E-05 30.6 6.6 61 161-228 26-87 (87)
256 1vjk_A Molybdopterin convertin 92.4 0.95 3.3E-05 29.8 8.0 60 164-228 28-98 (98)
257 1tyg_B YJBS; alpha beta barrel 92.3 0.39 1.3E-05 31.1 5.7 68 75-152 19-87 (87)
258 4e74_A Plexin-A4; RBD, structu 91.7 0.59 2E-05 32.0 6.3 62 11-72 27-114 (117)
259 1ef1_A Moesin; membrane, FERM 91.7 0.72 2.5E-05 36.8 8.0 72 153-225 2-79 (294)
260 2kl0_A Putative thiamin biosyn 91.3 0.39 1.3E-05 30.0 4.8 61 161-229 6-66 (73)
261 3rpf_C Molybdopterin convertin 91.1 1.5 5.2E-05 27.1 7.5 58 166-228 15-74 (74)
262 1vd2_A Protein kinase C, IOTA 91.0 1.1 3.8E-05 29.1 6.8 45 3-47 7-53 (89)
263 1ip9_A BEM1 protein; ubiquitin 90.7 0.87 3E-05 29.1 5.9 35 2-37 14-48 (85)
264 2k5p_A THis protein, thiamine- 90.7 0.28 9.6E-06 31.1 3.7 64 161-229 6-70 (78)
265 3kuz_A Plexin-C1; structural g 90.3 1.4 4.7E-05 30.5 7.1 61 163-223 39-125 (126)
266 1h4r_A Merlin; FERM, neurofibr 90.1 1.1 3.7E-05 36.2 7.7 74 151-225 21-99 (314)
267 1vd2_A Protein kinase C, IOTA 89.7 1.5 5E-05 28.5 6.6 48 77-125 7-55 (89)
268 2cu3_A Unknown function protei 89.7 0.75 2.6E-05 27.7 5.0 60 161-228 5-64 (64)
269 2kl0_A Putative thiamin biosyn 89.6 0.57 1.9E-05 29.2 4.4 61 1-72 1-61 (73)
270 1f0z_A THis protein; ubiquitin 89.4 0.65 2.2E-05 28.1 4.6 61 161-228 6-66 (66)
271 2kvr_A Ubiquitin carboxyl-term 89.0 0.42 1.4E-05 33.5 3.8 33 89-121 58-90 (130)
272 3kuz_A Plexin-C1; structural g 88.9 2.3 7.8E-05 29.3 7.3 60 11-70 39-124 (126)
273 3dwg_C 9.5 kDa culture filtrat 88.7 2 6.7E-05 27.8 6.8 71 1-73 1-90 (93)
274 2k5p_A THis protein, thiamine- 88.6 0.93 3.2E-05 28.6 5.0 63 85-152 6-69 (78)
275 3po0_A Small archaeal modifier 88.3 1.4 4.9E-05 28.2 6.0 61 87-152 18-89 (89)
276 2i1j_A Moesin; FERM, coiled-co 88.3 1.7 5.7E-05 38.4 8.0 73 152-225 4-82 (575)
277 1f0z_A THis protein; ubiquitin 87.8 0.55 1.9E-05 28.5 3.4 60 85-151 6-65 (66)
278 3po0_A Small archaeal modifier 87.6 2.2 7.6E-05 27.3 6.5 61 163-228 18-89 (89)
279 1ef1_A Moesin; membrane, FERM 87.4 3.2 0.00011 32.9 8.7 67 1-68 2-74 (294)
280 1fm0_D Molybdopterin convertin 86.6 1.6 5.5E-05 27.3 5.3 59 164-228 18-81 (81)
281 1fm0_D Molybdopterin convertin 86.2 1.2 4E-05 28.0 4.5 59 88-152 18-81 (81)
282 4eut_A Serine/threonine-protei 86.1 2.5 8.4E-05 35.0 7.7 40 9-48 320-359 (396)
283 2q5w_D Molybdopterin convertin 85.5 1.1 3.8E-05 27.8 4.0 58 88-151 17-76 (77)
284 1h4r_A Merlin; FERM, neurofibr 85.3 5.2 0.00018 32.1 9.0 65 2-67 24-93 (314)
285 3qa8_A MGC80376 protein; kinas 85.3 1 3.6E-05 40.5 5.1 51 9-59 320-371 (676)
286 3hm6_X Plexin-B1; structural g 84.4 3.4 0.00012 36.4 7.7 63 163-225 274-362 (644)
287 3ig3_A Plxna3 protein; plexin 84.1 3.7 0.00013 36.1 7.8 64 162-225 246-335 (627)
288 1ip9_A BEM1 protein; ubiquitin 84.0 5.4 0.00018 25.4 6.6 46 75-123 11-57 (85)
289 2q5w_D Molybdopterin convertin 83.2 1.5 5.1E-05 27.2 3.9 59 164-228 17-77 (77)
290 1rws_A Hypothetical protein PF 83.2 0.49 1.7E-05 29.7 1.6 53 90-151 24-76 (77)
291 3dwg_C 9.5 kDa culture filtrat 83.1 7.1 0.00024 25.0 7.6 61 166-228 20-93 (93)
292 1wgk_A Riken cDNA 2900073H19 p 82.3 6 0.0002 26.8 6.9 81 143-229 12-109 (114)
293 2kmm_A Guanosine-3',5'-BIS(dip 82.0 4.4 0.00015 24.6 5.8 61 1-70 1-61 (73)
294 1wgy_A RAP guanine nucleotide 81.5 5.7 0.0002 26.4 6.3 68 157-224 14-86 (104)
295 1rws_A Hypothetical protein PF 81.0 0.57 1.9E-05 29.4 1.2 54 166-228 24-77 (77)
296 2cu3_A Unknown function protei 80.5 1.7 5.7E-05 26.1 3.2 60 84-151 4-63 (64)
297 2g1e_A Hypothetical protein TA 80.4 4.8 0.00016 25.6 5.7 61 167-228 19-90 (90)
298 1wgk_A Riken cDNA 2900073H19 p 80.4 9.4 0.00032 25.8 7.3 74 76-152 11-108 (114)
299 1wgr_A Growth factor receptor- 79.4 4.3 0.00015 26.9 5.2 61 75-135 8-75 (100)
300 1wgy_A RAP guanine nucleotide 78.8 7.8 0.00027 25.8 6.3 71 76-146 9-84 (104)
301 2i1j_A Moesin; FERM, coiled-co 78.4 11 0.00037 33.3 8.9 68 1-69 5-78 (575)
302 3qij_A Protein 4.1; cytoskelet 78.4 3.6 0.00012 32.9 5.5 60 1-60 18-83 (296)
303 3qij_A Protein 4.1; cytoskelet 78.4 4.6 0.00016 32.2 6.1 73 151-223 16-94 (296)
304 1wgr_A Growth factor receptor- 76.6 5.3 0.00018 26.4 5.0 60 152-211 9-75 (100)
305 1q1o_A Cell division control p 76.5 3.5 0.00012 27.2 4.0 28 10-37 22-49 (98)
306 3ig3_A Plxna3 protein; plexin 76.3 12 0.00041 33.0 8.4 63 11-73 247-335 (627)
307 2qjl_A URM1, ubiquitin-related 75.4 14 0.00048 24.0 7.7 34 1-34 2-45 (99)
308 2c7h_A RBBP6, retinoblastoma-b 75.1 9.5 0.00032 24.4 5.7 70 155-228 9-84 (86)
309 1j0g_A Hypothetical protein 18 73.8 12 0.00041 23.5 5.7 65 165-229 26-91 (92)
310 2kmc_A Fermitin family homolog 73.8 16 0.00055 23.9 8.9 71 77-147 20-98 (102)
311 2qjl_A URM1, ubiquitin-related 73.6 13 0.00045 24.1 6.5 64 87-151 20-98 (99)
312 2k9x_A Tburm1, uncharacterized 73.1 1.8 6.1E-05 29.3 2.0 71 1-73 5-99 (110)
313 3ge3_C Toluene-4-monooxygenase 73.1 15 0.00051 23.2 6.2 59 165-223 17-82 (84)
314 2k9x_A Tburm1, uncharacterized 72.9 2 6.7E-05 29.1 2.2 75 77-153 5-103 (110)
315 3u52_E Phenol hydroxylase comp 72.8 13 0.00046 25.2 6.2 60 164-223 39-108 (119)
316 1y8x_B Ubiquitin-activating en 72.7 6.8 0.00023 25.8 4.7 60 11-70 5-82 (98)
317 2l52_A Methanosarcina acetivor 72.0 18 0.0006 23.6 7.2 68 1-72 4-95 (99)
318 2g1e_A Hypothetical protein TA 71.6 6.2 0.00021 25.0 4.4 60 91-151 19-89 (90)
319 3qa8_A MGC80376 protein; kinas 70.8 4.6 0.00016 36.4 4.7 52 85-136 320-372 (676)
320 4eut_A Serine/threonine-protei 70.6 15 0.00052 30.1 7.7 52 85-136 320-373 (396)
321 3hm6_X Plexin-B1; structural g 70.5 15 0.00051 32.5 7.6 63 11-73 274-362 (644)
322 3onh_A Ubiquitin-activating en 69.8 13 0.00045 25.6 5.8 51 96-147 19-78 (127)
323 2inc_C TOUB protein; DIIRON, 4 69.0 19 0.00065 22.8 7.2 60 165-224 15-82 (83)
324 2kmm_A Guanosine-3',5'-BIS(dip 68.1 15 0.00051 22.0 5.5 63 153-224 1-63 (73)
325 2kmc_A Fermitin family homolog 67.1 24 0.00081 23.1 8.7 70 2-71 21-98 (102)
326 1c1y_B Proto-onkogene serine/t 67.0 11 0.00039 23.5 4.6 43 154-196 3-45 (77)
327 1wxm_A A-RAF proto-oncogene se 66.9 12 0.00041 23.9 4.7 43 154-196 9-51 (86)
328 1y8x_B Ubiquitin-activating en 66.6 6.5 0.00022 25.9 3.6 59 88-146 6-82 (98)
329 1q1o_A Cell division control p 66.0 10 0.00035 24.9 4.4 38 86-123 22-64 (98)
330 3r8s_T 50S ribosomal protein L 65.6 11 0.00036 24.6 4.4 40 10-49 27-67 (93)
331 3ge3_C Toluene-4-monooxygenase 65.6 23 0.00078 22.4 5.7 58 89-146 17-81 (84)
332 2lgx_A Fermitin family homolog 65.5 13 0.00046 24.7 4.9 68 78-146 28-100 (112)
333 2inc_C TOUB protein; DIIRON, 4 64.8 24 0.00081 22.3 6.0 59 89-147 15-81 (83)
334 1vq8_S 50S ribosomal protein L 64.1 9.7 0.00033 24.3 4.0 33 10-42 22-54 (85)
335 2zjd_A Microtubule-associated 62.3 28 0.00095 24.1 6.4 59 90-148 56-119 (130)
336 2r2q_A Gamma-aminobutyric acid 60.9 24 0.00081 23.6 5.7 46 90-135 47-93 (110)
337 2dhz_A RAP guanine nucleotide 60.2 25 0.00084 24.0 5.6 49 76-124 9-66 (120)
338 1v8c_A MOAD related protein; r 59.3 12 0.0004 27.2 4.2 63 166-230 17-89 (168)
339 1hmj_A RPB5, protein (subunit 59.1 6.9 0.00024 24.6 2.5 46 179-229 20-66 (78)
340 3tve_T 50S ribosomal protein L 59.0 12 0.00042 24.2 3.8 39 10-48 21-60 (92)
341 3j21_T 50S ribosomal protein L 58.0 15 0.00052 23.5 4.1 33 10-42 23-55 (86)
342 2dhz_A RAP guanine nucleotide 57.9 20 0.00068 24.5 4.8 68 157-224 14-92 (120)
343 1pqs_A Cell division control p 57.4 12 0.0004 23.4 3.4 27 11-37 2-28 (77)
344 3au4_A Myosin-X; protein-prote 57.0 23 0.00078 30.8 6.5 45 1-45 217-263 (555)
345 2l05_A Serine/threonine-protei 56.5 17 0.00058 23.6 4.1 44 153-196 18-61 (95)
346 4gmv_A RAS-associated and plec 56.3 30 0.001 27.4 6.4 60 76-135 31-97 (281)
347 2zjr_Q 50S ribosomal protein L 56.3 15 0.0005 24.0 3.8 36 12-47 24-60 (95)
348 3onh_A Ubiquitin-activating en 55.3 29 0.00098 23.9 5.3 51 172-222 19-77 (127)
349 3h9d_A ATG8, microtubule-assoc 54.5 21 0.00071 24.3 4.6 44 15-58 52-96 (119)
350 2c7h_A RBBP6, retinoblastoma-b 54.5 39 0.0013 21.5 7.0 46 78-123 8-56 (86)
351 3m95_A Autophagy related prote 54.4 21 0.00073 24.5 4.6 44 15-58 57-101 (125)
352 3u52_E Phenol hydroxylase comp 53.8 49 0.0017 22.4 6.4 60 11-70 38-107 (119)
353 2hj1_A Hypothetical protein; s 53.2 44 0.0015 21.7 6.1 56 11-71 26-84 (97)
354 3au4_A Myosin-X; protein-prote 52.9 43 0.0015 29.1 7.5 47 75-121 215-263 (555)
355 3hk0_A Growth factor receptor- 52.8 58 0.002 25.3 7.5 74 76-149 8-88 (256)
356 1eik_A RNA polymerase subunit 51.8 7.2 0.00025 24.4 1.7 45 179-228 22-67 (77)
357 3ny5_A Serine/threonine-protei 51.2 27 0.00092 22.7 4.4 45 154-198 15-59 (96)
358 3rui_B Autophagy-related prote 50.4 28 0.00096 23.6 4.7 44 15-58 51-95 (118)
359 2v1y_A Phosphatidylinositol-4, 50.4 36 0.0012 22.7 5.1 30 4-33 23-52 (108)
360 4dxe_H ACP, acyl carrier prote 50.0 2.2 7.7E-05 28.2 -0.9 82 12-109 17-99 (101)
361 3r8s_T 50S ribosomal protein L 49.8 36 0.0012 22.0 4.9 40 86-125 27-67 (93)
362 3lxf_A Ferredoxin; iron, iron- 49.0 22 0.00076 23.3 4.0 27 2-28 2-28 (104)
363 1eo6_A GATE-16, golgi-associat 48.5 60 0.002 21.9 6.3 58 90-147 48-109 (117)
364 2zjd_A Microtubule-associated 48.3 63 0.0022 22.3 6.3 44 15-58 57-102 (130)
365 2cu1_A Mitogen-activated prote 48.1 56 0.0019 21.4 6.0 43 2-47 8-51 (103)
366 3rui_B Autophagy-related prote 47.9 62 0.0021 21.9 6.3 58 90-147 50-111 (118)
367 3pvl_A Myosin VIIA isoform 1; 47.8 29 0.00098 31.1 5.6 45 1-45 264-309 (655)
368 1n62_A Carbon monoxide dehydro 47.5 19 0.00063 26.1 3.6 28 2-30 5-32 (166)
369 1pqs_A Cell division control p 46.7 23 0.00079 22.0 3.5 36 88-123 3-43 (77)
370 1j0g_A Hypothetical protein 18 46.0 53 0.0018 20.6 6.1 62 89-150 26-88 (92)
371 1af8_A Actinorhodin polyketide 45.8 20 0.00068 22.2 3.3 79 20-110 4-82 (86)
372 2lgx_A Fermitin family homolog 45.0 20 0.00069 23.9 3.1 70 2-72 28-102 (112)
373 3hk0_A Growth factor receptor- 44.9 42 0.0014 26.1 5.5 43 154-196 10-53 (256)
374 1t3q_A Quinoline 2-oxidoreduct 44.7 26 0.00088 25.3 4.1 28 1-29 10-37 (168)
375 1ffv_A CUTS, iron-sulfur prote 44.6 22 0.00075 25.6 3.6 28 2-30 5-32 (163)
376 1rrb_A RAF-1 RBD, RAF proto-on 44.6 37 0.0013 22.5 4.3 43 154-196 20-62 (107)
377 2eel_A Cell death activator CI 44.5 33 0.0011 22.1 4.1 38 173-210 28-67 (91)
378 1wxm_A A-RAF proto-oncogene se 44.1 60 0.002 20.6 5.5 43 78-120 9-51 (86)
379 1frr_A Ferredoxin I; electron 44.1 58 0.002 20.5 5.9 27 2-29 3-29 (95)
380 2v1y_A Phosphatidylinositol-4, 44.0 35 0.0012 22.7 4.3 64 75-138 18-95 (108)
381 4gdk_A Ubiquitin-like protein 43.9 62 0.0021 20.7 6.0 47 89-135 22-70 (91)
382 3tca_A Amyloid beta A4 precurs 43.2 59 0.002 25.1 6.4 40 3-42 37-76 (291)
383 1c1y_B Proto-onkogene serine/t 43.1 58 0.002 20.2 5.3 42 79-120 4-45 (77)
384 4gmv_A RAS-associated and plec 42.6 58 0.002 25.7 6.1 56 3-58 34-96 (281)
385 2bt6_A Adrenodoxin 1; rutheniu 42.5 29 0.001 22.7 3.8 27 2-28 8-34 (108)
386 1rm6_C 4-hydroxybenzoyl-COA re 41.7 37 0.0013 24.3 4.5 25 7-31 8-32 (161)
387 4gdk_A Ubiquitin-like protein 41.5 42 0.0015 21.5 4.3 34 14-47 23-57 (91)
388 2zkr_s 60S ribosomal protein L 40.6 32 0.0011 24.6 3.9 33 10-42 93-125 (156)
389 1awd_A Ferredoxin; electron tr 39.9 69 0.0024 20.2 6.5 28 1-29 1-28 (94)
390 3h9d_A ATG8, microtubule-assoc 39.9 85 0.0029 21.2 6.3 47 90-136 51-98 (119)
391 3hrd_D Nicotinate dehydrogenas 39.8 27 0.00092 25.1 3.4 27 1-28 4-30 (160)
392 3tca_A Amyloid beta A4 precurs 39.7 66 0.0023 24.8 6.1 41 77-117 35-75 (291)
393 2r2q_A Gamma-aminobutyric acid 39.5 69 0.0024 21.2 5.3 44 15-58 48-92 (110)
394 3m95_A Autophagy related prote 39.4 90 0.0031 21.3 6.3 47 90-136 56-103 (125)
395 2j58_A WZA, outer membrane lip 39.2 1.6E+02 0.0053 24.0 16.8 116 65-182 139-265 (359)
396 3pvl_A Myosin VIIA isoform 1; 38.9 43 0.0015 29.9 5.3 47 75-121 262-309 (655)
397 2y5c_A Adrenodoxin-like protei 38.1 38 0.0013 22.2 3.8 27 2-28 7-33 (109)
398 2wlb_A ETP1-FD, electron trans 38.1 40 0.0014 21.7 3.9 28 2-29 5-32 (103)
399 3u5e_X 60S ribosomal protein L 38.0 37 0.0013 23.8 3.8 32 11-42 80-111 (142)
400 2hj1_A Hypothetical protein; s 37.7 82 0.0028 20.4 7.5 55 163-222 26-83 (97)
401 4a17_R RPL23A, 60S ribosomal p 37.6 41 0.0014 23.9 4.0 33 10-42 87-119 (150)
402 1eo6_A GATE-16, golgi-associat 35.3 88 0.003 21.0 5.3 44 15-58 49-93 (117)
403 3e19_A FEOA; transcriptional r 35.1 47 0.0016 20.1 3.7 29 130-159 29-57 (77)
404 1uwm_A Ferredoxin VI, FDVI; el 34.9 54 0.0018 21.2 4.2 27 2-28 2-28 (106)
405 2eki_A DRG 1, developmentally- 34.9 53 0.0018 21.2 3.9 59 166-225 28-88 (93)
406 3tve_T 50S ribosomal protein L 34.9 48 0.0016 21.4 3.7 39 87-125 22-61 (92)
407 1lfd_A Ralgds; RAL, effector i 34.6 89 0.003 19.9 5.7 39 1-39 6-45 (87)
408 2zjr_Q 50S ribosomal protein L 33.9 45 0.0015 21.6 3.5 36 89-124 25-61 (95)
409 1xlq_A Putidaredoxin, PDX; [2F 33.8 52 0.0018 21.3 4.0 27 2-28 2-28 (106)
410 1vq8_S 50S ribosomal protein L 33.7 36 0.0012 21.6 2.9 35 86-120 22-56 (85)
411 2lte_A Specialized acyl carrie 39.0 9.2 0.00032 25.2 0.0 72 22-109 27-98 (103)
412 3cjl_A Domain of unknown funct 32.6 50 0.0017 21.1 3.4 39 1-39 6-46 (88)
413 2l05_A Serine/threonine-protei 32.3 1E+02 0.0035 19.9 5.8 45 76-120 17-61 (95)
414 3hui_A Ferredoxin; cytochrome 31.8 64 0.0022 22.0 4.2 27 2-28 23-49 (126)
415 3iz5_X 60S ribosomal protein L 31.1 42 0.0014 23.9 3.2 33 11-43 90-122 (152)
416 4dxa_B KREV interaction trappe 31.0 59 0.002 25.9 4.6 43 1-47 6-53 (322)
417 3chb_D Cholera toxin; toxin/re 30.3 57 0.002 20.5 3.3 31 3-33 39-69 (104)
418 1vku_A Acyl carrier protein; T 30.1 7.1 0.00024 25.6 -0.9 75 20-110 16-90 (100)
419 2cu1_A Mitogen-activated prote 29.1 1.2E+02 0.0042 19.8 5.8 44 79-125 9-53 (103)
420 2qcp_X Cation efflux system pr 28.6 30 0.001 21.6 1.9 27 202-230 45-71 (80)
421 3ny5_A Serine/threonine-protei 28.5 1.2E+02 0.0042 19.6 5.3 43 78-120 15-57 (96)
422 2qwv_A UPF0217 protein VC_A105 28.2 1.4E+02 0.0046 22.4 5.7 65 135-199 50-115 (208)
423 2k5l_A FEOA; structure, NESG, 27.9 80 0.0027 19.3 3.9 21 130-150 26-46 (81)
424 2os5_A Acemif; macrophage migr 27.8 1.3E+02 0.0043 19.8 5.2 86 19-123 16-101 (119)
425 1f2r_I Inhibitor of caspase-ac 27.7 1.3E+02 0.0045 19.7 5.1 34 21-54 37-74 (100)
426 2cnr_A FAS, ACP, acyl carrier 27.6 9.1 0.00031 23.5 -0.7 73 21-109 7-80 (82)
427 1wz3_A Autophagy 12B, ATG12B, 27.5 1.1E+02 0.0039 19.7 4.6 74 141-224 12-90 (96)
428 3bbo_V Ribosomal protein L23; 27.4 29 0.00098 25.7 1.8 38 10-47 131-169 (198)
429 1uiz_A MIF, macrophage migrati 27.2 1.3E+02 0.0045 19.5 5.2 85 20-123 17-101 (115)
430 2vb2_X Copper protein, cation 26.8 33 0.0011 21.8 1.9 27 202-230 53-79 (88)
431 2k4y_A FEOA-like protein; GFT 25.2 91 0.0031 19.4 3.8 29 130-158 29-57 (86)
432 3hvz_A Uncharacterized protein 25.1 97 0.0033 19.1 3.8 60 2-70 7-66 (78)
433 3ejb_A Acyl carrier protein; p 25.0 9.1 0.00031 24.8 -1.1 80 14-109 15-95 (97)
434 1jq4_A Methane monooxygenase c 23.8 85 0.0029 19.9 3.6 28 2-29 6-33 (98)
435 2xcz_A Possible ATLS1-like lig 23.5 1.5E+02 0.0052 19.2 4.9 82 23-123 20-101 (115)
436 1iue_A Ferredoxin; electron tr 23.4 1E+02 0.0035 19.6 3.9 26 3-29 5-30 (98)
437 1a70_A Ferredoxin; iron-sulfur 23.2 1.5E+02 0.005 18.7 6.5 26 3-29 5-30 (97)
438 1rrb_A RAF-1 RBD, RAF proto-on 23.0 1.7E+02 0.0058 19.3 5.8 43 78-120 20-62 (107)
439 2kjs_A Putative acyl carrier p 23.0 14 0.00049 23.4 -0.4 74 21-110 2-76 (87)
440 1b9r_A Protein (terpredoxin); 22.7 45 0.0016 21.6 2.0 27 2-28 2-28 (105)
441 1nq4_A Oxytetracycline polyket 22.5 24 0.00082 22.6 0.6 79 20-110 3-81 (95)
442 4a6q_A Histone deacetylase com 22.1 2.1E+02 0.0071 20.0 7.7 64 12-75 55-141 (143)
443 2ava_A ACP I, acyl carrier pro 21.9 38 0.0013 20.5 1.5 73 22-109 5-77 (82)
444 1rax_A Protein (RA-domain of R 21.8 1.1E+02 0.0036 20.6 3.6 39 1-39 31-70 (115)
445 4dxa_B KREV interaction trappe 21.8 98 0.0034 24.6 4.3 36 75-114 4-41 (322)
446 2al6_A Focal adhesion kinase 1 21.5 73 0.0025 26.1 3.5 55 81-135 12-77 (375)
447 3eud_A Protein SHQ1; CS domain 20.9 1.2E+02 0.0042 20.3 3.8 42 188-229 58-99 (115)
448 1ltr_D ETB-R2, heat-labIle ent 20.8 75 0.0026 20.2 2.6 31 3-33 38-68 (113)
449 3h0g_E DNA-directed RNA polyme 20.3 49 0.0017 24.9 1.9 47 179-230 156-203 (210)
450 1dzf_A DNA-directed RNA polyme 20.2 48 0.0016 25.1 1.9 46 179-229 161-207 (215)
451 2nvu_B Maltose binding protein 20.1 1.8E+02 0.0061 26.4 6.1 59 164-222 713-789 (805)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=3.9e-39 Score=242.01 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-e-cCccccCCccccccccccccceeeeee-ecCCe
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~-~g~~L~d~~~l~~~~i~~~~~i~l~~~-~~~~~ 77 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++++.++ +++.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||-
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998873
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=241.13 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..+.+.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||.+||++|+..+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++++++|
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 3
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.3e-37 Score=233.75 Aligned_cols=154 Identities=34% Similarity=0.513 Sum_probs=146.9
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-E-cCcccCCCccHhhcccccCCceEEEEE-Eecc
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 152 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~-~g~~L~d~~tL~~~~i~~~~~i~l~~~-~~~~ 152 (230)
.|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++++++++ ++++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 378999999999999999999999999999999999999999999 9 799999999999999999999999999 5899
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
|.++++..+|+++.+++++++||++||++|+.+.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=236.61 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.7
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..+++
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.++++..+|+++.+++++++||.+||++|+.++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=5.7e-37 Score=228.58 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+.++.|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=6e-36 Score=223.01 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=147.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecceeeE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++++++.+..+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
++..+|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.4e-22 Score=139.83 Aligned_cols=101 Identities=74% Similarity=0.991 Sum_probs=94.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
++|+|+.++|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..++.+++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EE---eccCeeEeeecCCCChHHH
Q 026973 81 VK---TLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 81 v~---~~~g~~~~i~v~~~~tV~~ 101 (230)
++ ...|+++.+++.+++||++
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 87 4568888999999888864
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=124.53 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.++|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=1.2e-20 Score=125.55 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+.+.|+++.++++|++||++||++|+++.|+|+++|+|.|+|+.|+|+.||++|+|.++++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 10
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.83 E-value=1.3e-20 Score=125.51 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCcc-ccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~-L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+. |+|+.+|++|||.++++|++.++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998764
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.82 E-value=2.7e-20 Score=125.31 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++.+++
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887554
No 12
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.82 E-value=4.9e-20 Score=126.66 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|+..+|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEeccCeeEee
Q 026973 81 VKTLTGKTITL 91 (230)
Q Consensus 81 v~~~~g~~~~i 91 (230)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88887765443
No 13
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.1e-20 Score=123.35 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCCeeEEecCccccCCcccccccc-ccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||+++|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .++++|++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999998766 999999999999 9999999999999999999999999999999 799999998876
No 14
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=8e-21 Score=133.83 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=96.7
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.++++|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.++.+|.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEE---eeccceEEEEeeccchHHH
Q 026973 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (230)
Q Consensus 154 ~i~v~---~~~g~~~~~~v~~~~tV~~ 177 (230)
.++++ ...|+++.+++++++||..
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 88887 4468889999999888864
No 15
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.80 E-value=1.9e-19 Score=117.83 Aligned_cols=75 Identities=56% Similarity=0.935 Sum_probs=71.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 16
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=6.5e-20 Score=124.53 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+||++.|+++.+++.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=8.6e-20 Score=122.96 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.4
Q ss_pred ccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhccccc
Q 026973 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~ 139 (230)
|..+++++++.+..+..|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788999999988999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCceEEEEE
Q 026973 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999998864
No 18
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.80 E-value=1.4e-19 Score=122.62 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998865
No 19
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=118.37 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=74.4
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~ 227 (230)
+.|.|+|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999987
No 20
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.6e-19 Score=118.82 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.2
Q ss_pred CEEEEEccCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++ +++ +++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999998875
No 21
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.80 E-value=1.9e-19 Score=121.75 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+| +++++||.++.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999987643
No 22
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.3e-19 Score=120.62 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=70.4
Q ss_pred eeeeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 69 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 69 l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
++...++.|+|+|+...|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|+++++.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 344556789999999999999999999999999999999999999999999999999999999999999999999886
No 23
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=121.36 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988764
No 24
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.4e-19 Score=120.65 Aligned_cols=75 Identities=87% Similarity=1.259 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++.++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887643
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.79 E-value=3.7e-19 Score=116.40 Aligned_cols=75 Identities=95% Similarity=1.308 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.++..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.79 E-value=2e-19 Score=121.10 Aligned_cols=75 Identities=57% Similarity=0.958 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-19 Score=122.64 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++.++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987653
No 28
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=2.1e-19 Score=120.90 Aligned_cols=77 Identities=56% Similarity=0.935 Sum_probs=71.9
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999996
No 29
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=120.03 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.6
Q ss_pred ccccCCceEEEEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCC
Q 026973 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~ 215 (230)
|+.++++++++++....|.|+|+..+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788888998888889999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEe
Q 026973 216 ESTLHLVLR 224 (230)
Q Consensus 216 ~~~i~l~~~ 224 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999876
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.79 E-value=4.6e-19 Score=121.33 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=73.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
|+|+|+..+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988666543
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.3e-19 Score=119.23 Aligned_cols=74 Identities=80% Similarity=1.139 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++++++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 32
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=2.8e-19 Score=117.95 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 33
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=3.8e-19 Score=119.68 Aligned_cols=80 Identities=84% Similarity=1.235 Sum_probs=70.0
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.||.|+++..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|++||+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999963
No 34
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=5.4e-19 Score=118.74 Aligned_cols=75 Identities=33% Similarity=0.510 Sum_probs=72.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988754
No 35
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=116.43 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 36
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=6.6e-19 Score=117.75 Aligned_cols=74 Identities=92% Similarity=1.229 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998764
No 37
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.78 E-value=5e-19 Score=122.96 Aligned_cols=73 Identities=30% Similarity=0.450 Sum_probs=70.5
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCcccccccccc-------ccceeeeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~-------~~~i~l~~~ 72 (230)
|.||++...++ ++++++.+++||.+||++|+...|||+++|+|+|+|+.|+|++||++|||.+ +++|||.++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999888 8999999999999999999999999999999999999999999999999999 999999987
Q ss_pred e
Q 026973 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 38
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.3e-18 Score=118.74 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|+.. .|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 7999999999999999999999999999999999998764
No 39
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.78 E-value=8.8e-19 Score=131.69 Aligned_cols=124 Identities=66% Similarity=0.893 Sum_probs=95.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.++.+++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998765555
Q ss_pred EEecc-C--eeEeeecCCCChHHHHHHHHHhHhCCC-CCCcEEEEcCcccCC
Q 026973 81 VKTLT-G--KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLED 128 (230)
Q Consensus 81 v~~~~-g--~~~~i~v~~~~tV~~lK~~i~~~~~ip-~~~q~L~~~g~~L~d 128 (230)
|+... | ..-.+.+.++.++.+-...+ .+. .+..+..|.-+.|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~----~i~~~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETSI----KLEMDQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGCB----EEEESSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccce----EEecCCcceEEEhHHHHHH
Confidence 54321 2 23466676666553322111 111 134566677766654
No 40
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.78 E-value=5.8e-19 Score=120.35 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.4
Q ss_pred CEEEEEccCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCCeeEEecCccccCCcccccccc-ccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||+++|++|++ ++++++||.+||++| +...|+|+++|+|+|+|+.|+|+.+|++|+| .++++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 9999999999999999999999999999999 999999998864
No 41
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=9.8e-19 Score=116.94 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|+.. .|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+.+
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999987653
No 42
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.8e-19 Score=123.71 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+||+++|+++.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998753
No 43
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=7.5e-19 Score=119.49 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCC-ccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++| +++++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+ .+|++|||.++++|+|.+++++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 6899999988 999999999999999999999999999999999999999999 9999999999999999988754
No 44
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=9.5e-19 Score=114.40 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=71.5
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.|+|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5788998889999999999999999999999999999999999999999999999999999999999999999998
No 45
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=117.67 Aligned_cols=75 Identities=36% Similarity=0.606 Sum_probs=71.5
Q ss_pred CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++| +++.+ ++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.+++.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 599999999999999999999999999999999999999999999999999999988754
No 46
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.77 E-value=6.7e-19 Score=118.53 Aligned_cols=78 Identities=58% Similarity=0.980 Sum_probs=75.0
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 457899998899999999999999999999999999999999999999999999999999999999999999999998
No 47
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=1.2e-18 Score=119.24 Aligned_cols=78 Identities=94% Similarity=1.270 Sum_probs=73.3
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
||.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999985
No 48
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=116.74 Aligned_cols=78 Identities=78% Similarity=1.126 Sum_probs=72.0
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.|.|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++.|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 478899988999999999999999999999999999999999999999999999999999999999999999999985
No 49
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=8.2e-19 Score=120.11 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=72.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.++|.+++||.+||++|++..|||+++|+|+|+|+.|.|+.+|++|+|.++++|++.++..+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 50
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.77 E-value=1.4e-18 Score=121.86 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.++|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++.++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988653
No 51
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-18 Score=119.74 Aligned_cols=78 Identities=95% Similarity=1.288 Sum_probs=74.7
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 348899999999999999999999999999999999999999999999999999999999999999999999999998
No 52
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=1.9e-18 Score=112.96 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.2
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.++|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+++|++|+++.|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5788998889999999999999999999999999999999999999999999999999999999999999999998
No 53
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2e-18 Score=115.92 Aligned_cols=79 Identities=34% Similarity=0.540 Sum_probs=75.8
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+.|.|+|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4588999988899999999999999999999999999999999999999999999999999999999999999999996
No 54
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.76 E-value=1.1e-18 Score=115.03 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.0
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|.|+|+..+|+.+.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999998
No 55
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.76 E-value=1.1e-18 Score=121.77 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=68.5
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccc-------cccceeeeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~-------~~~~i~l~~~ 72 (230)
|+++|+...|+ +++++|.+++||.+||++|+...|||+++|+|+|+|+.|+|+++|++|||. .+++|||.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999887 699999999999999999999999999999999999999999999999999 6899999876
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.76 E-value=1.4e-18 Score=119.35 Aligned_cols=90 Identities=81% Similarity=1.091 Sum_probs=74.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecceeeE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++..+..+|..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccceEE
Q 026973 157 VKTLTGKTIT 166 (230)
Q Consensus 157 v~~~~g~~~~ 166 (230)
.+..+++.-.
T Consensus 81 ~~~v~~~~~~ 90 (98)
T 1yx5_B 81 SSSVDKLAAA 90 (98)
T ss_dssp ----------
T ss_pred cccCCCchhh
Confidence 8877765443
No 57
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.76 E-value=8.4e-19 Score=133.19 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=78.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||.+++.++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998877776
Q ss_pred EE
Q 026973 81 VK 82 (230)
Q Consensus 81 v~ 82 (230)
|+
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 58
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.63 E-value=3.6e-20 Score=121.35 Aligned_cols=74 Identities=34% Similarity=0.600 Sum_probs=71.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998765
No 59
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=117.72 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=69.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+. |+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999998 899999999999999999999999999999999999999999999999999999999999987653
No 60
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.76 E-value=2.3e-18 Score=112.90 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999997653
No 61
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.5e-18 Score=114.92 Aligned_cols=78 Identities=90% Similarity=1.212 Sum_probs=74.2
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.|.|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++.|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999985
No 62
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=116.57 Aligned_cols=79 Identities=35% Similarity=0.576 Sum_probs=71.2
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
..|.|+|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+++||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4588999998899999999999999999999999999999999999999999999999999999999999999998884
No 63
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=3.2e-18 Score=113.92 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=70.9
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc-cCCCccHhhcccccCCceEEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~-L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.-|.|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|.+|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 358999999999999999999999999999999999999999999999999 99999999999999999999875
No 64
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=2.7e-18 Score=117.55 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=75.6
Q ss_pred ecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...|.|+|+..+|+++.+++++++||.+||++|+.+.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999999998
No 65
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=121.01 Aligned_cols=92 Identities=80% Similarity=1.052 Sum_probs=80.3
Q ss_pred cccCCceEEEEEE--------ecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCcc
Q 026973 137 IQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 137 i~~~~~i~l~~~~--------~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L 208 (230)
+.+|+++++.... ...|.|+|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 91 (111)
T 2ojr_A 12 WIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 91 (111)
T ss_dssp SCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBT
T ss_pred eecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH
Confidence 4455555554332 13588999988899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEEEeccCC
Q 026973 209 ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 209 ~~~~i~~~~~i~l~~~~~~g 228 (230)
++|+|++|++|+++.|++||
T Consensus 92 ~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 92 SDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTCCTTCEEEEEECCCC-
T ss_pred HHcCCCCCCEEEEEEeCCCC
Confidence 99999999999999999998
No 66
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-18 Score=119.77 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=69.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------CeeEEecCcccc-CCccccccccccc
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~---------------~q~l~~~g~~L~-d~~~l~~~~i~~~ 64 (230)
|+|+|++++|++++++|.+++||.+||++|++..++|+. +|+|.|+|+.|. |+.+|++|||.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999984 569999999996 6799999999999
Q ss_pred cceeeeeeecC
Q 026973 65 STLHLVLRLRG 75 (230)
Q Consensus 65 ~~i~l~~~~~~ 75 (230)
++||++.+.+.
T Consensus 88 ~~l~lv~~lr~ 98 (105)
T 1v2y_A 88 DEVSFIKKLGQ 98 (105)
T ss_dssp EEEEEEECSCS
T ss_pred CEEEEEehhcc
Confidence 99999987754
No 67
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=3.6e-18 Score=118.85 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+++.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.++++||+..+.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988653
No 68
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=5.5e-18 Score=115.19 Aligned_cols=78 Identities=27% Similarity=0.434 Sum_probs=73.4
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCC-CccccccCCCCCEEEEEEeccCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
..|.|+|+...+ ++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+++.|++||+
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 457888998777 889999999999999999999999999999999999999999 999999999999999999999985
No 69
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=8.7e-18 Score=113.28 Aligned_cols=80 Identities=36% Similarity=0.612 Sum_probs=75.0
Q ss_pred cceeeEEEeecc-ceEEE-EeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~g-~~~~~-~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
..|.|+|+..+| +++.+ ++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 458899998888 68999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026973 229 QF 230 (230)
Q Consensus 229 ~~ 230 (230)
..
T Consensus 86 ~~ 87 (89)
T 1wy8_A 86 PS 87 (89)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 70
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=6.1e-18 Score=118.55 Aligned_cols=77 Identities=95% Similarity=1.307 Sum_probs=73.6
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.|.|+|+..+|+.+.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 47889998999999999999999999999999999999999999999999999999999999999999999999998
No 71
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.2e-18 Score=115.32 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=69.7
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCCeeEEecCccccCCcccccc--ccccccceeeeeeec
Q 026973 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gip~~~q~l~~~g~~L~d~~~l~~~--~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+ ++.+++++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|.+++++||++++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999998 67778889999999999999999 9999999999999999999999999 999999999998764
No 72
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.74 E-value=8.3e-18 Score=116.81 Aligned_cols=77 Identities=30% Similarity=0.458 Sum_probs=70.3
Q ss_pred eeeEEEeeccc-eEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCC-------CCEEEEEEe
Q 026973 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~-------~~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++|||++ +++|++++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45666666666 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccCCCC
Q 026973 225 LRGGQF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
. +|+|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 6776
No 73
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=115.78 Aligned_cols=78 Identities=37% Similarity=0.629 Sum_probs=71.4
Q ss_pred EecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 149 ~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+...|.|+|+. |+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 34457888886 7899999999999999999999999999999999999999999999999999999999999999998
No 74
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=5.8e-18 Score=114.59 Aligned_cols=76 Identities=91% Similarity=1.259 Sum_probs=72.5
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
...|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999998765
No 75
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=6.6e-18 Score=116.11 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+.++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999886 799999999999999999999999999999999999999999999999999999999987643
No 76
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=116.99 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=71.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 77
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=115.26 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=70.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999998 89999999999999999999999999999999999999999999999999999999999988764
No 78
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=7.5e-18 Score=117.59 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=70.5
Q ss_pred eeeEEEeeccc-eEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCC-------CCCEEEEEEe
Q 026973 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~-------~~~~i~l~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|++.|+|+|+|+.|+|+++|++|||+ ++++|++++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45667766665 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ccCCCC
Q 026973 225 LRGGQF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
.||+|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 88876
No 79
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=6e-18 Score=114.86 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=69.0
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
+.|+|+|++..|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 348999999999999999999999999999999999999999999999999999999999999999999876
No 80
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=5.3e-18 Score=115.96 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=70.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+.. |+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+..+..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 78999998 999999999999999999999999999999999999999999999999999999999999887643
No 81
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=109.30 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=70.6
Q ss_pred cceeeEEEeeccceE-EEE-eeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEec
Q 026973 151 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~-~~~-v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
++|.|+|+..+|+++ .++ +++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 468899999999985 999 999999999999999999999999999999999999999999999999999999886
No 82
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.7e-18 Score=112.32 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=68.9
Q ss_pred eeeEEEeccCeeEeeecC--CCChHHHHHHHH-HhHhCCCCCCcEEEEcCcccCCCccHhhccc-ccCCceEEEEEEe
Q 026973 77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~--~~~tV~~lK~~i-~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~~ 150 (230)
|+|+|++.+|+++.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++.++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 789999999999988755 999999999999 9999999999999999999999999999999 7999999987653
No 83
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.72 E-value=1.7e-17 Score=112.03 Aligned_cols=78 Identities=32% Similarity=0.553 Sum_probs=72.2
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
..|.|+|+..+|+++.+++++++||.+||++|+.++|+|++.|+|+|+|+.|+|+.+|.+|+| +|++|+++.|.+++.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 347899999999999999999999999999999999999999999999999999999999999 899999999987653
No 84
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=108.78 Aligned_cols=75 Identities=40% Similarity=0.703 Sum_probs=71.2
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+|++|++++++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999998764
No 85
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.71 E-value=1.5e-17 Score=116.63 Aligned_cols=75 Identities=32% Similarity=0.445 Sum_probs=71.2
Q ss_pred CEEEEEcc---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++. +|+++.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++.++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERS 106 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCC
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 68999998 89999999998 99999999999999999999999999999999999999999999999999987643
No 86
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.71 E-value=1.4e-17 Score=125.04 Aligned_cols=82 Identities=91% Similarity=1.223 Sum_probs=75.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecceeeE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++++|....
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999886555
Q ss_pred EE
Q 026973 157 VK 158 (230)
Q Consensus 157 v~ 158 (230)
++
T Consensus 81 vk 82 (169)
T 3l0w_B 81 IK 82 (169)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 87
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.5e-17 Score=115.25 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=67.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCCeeEEecCccccCCccccccccccc--cceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--p~~~q~l~~~g~~L~d~~~l~~~~i~~~--~~i~l~ 70 (230)
|.|+|+++.|++++++|.+++||.+||++|++ ..|+ |+++|+|+|+|+.|+|+.+|++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 5675 6999999999999999999999999755 678888
Q ss_pred eeec
Q 026973 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8763
No 88
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.3e-18 Score=116.74 Aligned_cols=93 Identities=31% Similarity=0.514 Sum_probs=67.1
Q ss_pred CccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccH
Q 026973 53 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 53 ~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL 132 (230)
...+++|.|.. +.++.......+.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 35678898875 444444455567888886 889999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCceEEEEE
Q 026973 133 ADYNIQKESTLHLVLR 148 (230)
Q Consensus 133 ~~~~i~~~~~i~l~~~ 148 (230)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999988753
No 89
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.3e-17 Score=111.98 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=67.3
Q ss_pred eeEEEeec----cceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 154 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 154 ~i~v~~~~----g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.+.|+..+ ++.+.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 34555555 6789999999999999999999999999999999999999999999999999999999 788877653
No 90
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.71 E-value=6e-19 Score=126.91 Aligned_cols=74 Identities=97% Similarity=1.310 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.1e-17 Score=117.09 Aligned_cols=73 Identities=32% Similarity=0.418 Sum_probs=69.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+++.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 78999999 99999999999999999999999999999999999999999999999999999999999988764
No 92
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=4.1e-17 Score=108.96 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=70.8
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhH---hCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~---~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+..|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+..
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 457999999999999999999999999999999998 88999999999999999999999999999999999987653
No 93
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.70 E-value=3.9e-17 Score=111.73 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.0
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCcccccccc-ccccceeeeeee
Q 026973 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+|+...+ .+++++|.|++||.+||++|+..+||||++|||+++|+.++|+.+|++||| .+++++||.+..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 599999998743
No 94
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3e-17 Score=114.19 Aligned_cols=73 Identities=36% Similarity=0.503 Sum_probs=69.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+ +.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+..+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999886 79999999999999999999999999999999999999999999999999999999988764
No 95
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.2e-17 Score=111.34 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=72.1
Q ss_pred cceeeEEEeeccc--eEEEEeeccchHHHHHHHhcccc--CCCCCceEEEEcCeecCCCCccccc--cCCCCCEEEEEEe
Q 026973 151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~--gi~~~~q~l~~~g~~l~d~~~L~~~--~i~~~~~i~l~~~ 224 (230)
..|.|+|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+++.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 3478888888887 56666779999999999999998 9999999999999999999999999 9999999999999
Q ss_pred ccCCC
Q 026973 225 LRGGQ 229 (230)
Q Consensus 225 ~~~g~ 229 (230)
++||.
T Consensus 86 ~~gg~ 90 (93)
T 1wgd_A 86 VKSGP 90 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99986
No 96
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.7e-17 Score=110.98 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=62.2
Q ss_pred EEEEccC----CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 3 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~~----g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
+.|+..+ |+.++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4555555 7799999999999999999999999999999999999999999999999999999999443
No 97
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.7e-17 Score=113.53 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=68.8
Q ss_pred CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCC-ccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+...| +++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|++..+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 7899999754 7999999999999999999999999999999999999999988 799999999999999987653
No 98
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.2e-18 Score=115.54 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=67.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+|+. +|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688887 89999999999999999999999999999999999999999999999999999999999998653
No 99
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=3.6e-17 Score=111.47 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=69.5
Q ss_pred cCCeeeEEEeccCeeEee--ecCCCChHHHHHHHH-HhHhCCCCCCcEEEEcCcccCCCccHhhccc-ccCCceEEEEEE
Q 026973 74 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i--~v~~~~tV~~lK~~i-~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~ 149 (230)
...|+|+|++.+|+.+.+ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 467999999999998777 566999999999999 8888999999999999999999999999999 999999999764
No 100
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=3.8e-17 Score=114.61 Aligned_cols=79 Identities=33% Similarity=0.471 Sum_probs=74.4
Q ss_pred cceeeEEEee---ccceEEEEeec-cchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEecc
Q 026973 151 GGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~---~g~~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~ 226 (230)
+.+.|+|+.. +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 4577888877 78899999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 026973 227 GGQ 229 (230)
Q Consensus 227 ~g~ 229 (230)
||.
T Consensus 106 GGk 108 (111)
T 1we6_A 106 SGP 108 (111)
T ss_dssp CSS
T ss_pred CCC
Confidence 995
No 101
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=6.9e-17 Score=110.11 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhH---hCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~---~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 689999999999999999999999999999999 78999999999999999999999999999999999987654
No 102
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=4.5e-17 Score=115.54 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=67.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCCeeEEecCccccCCcccccccccccc--ceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gip--~~~q~l~~~g~~L~d~~~l~~~~i~~~~--~i~l~ 70 (230)
|.|+|++++|+++++++++++||.+||++|++ ..|+| +++|+|+|+|+.|+|+.+|++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 77884 8999999999999999999999999665 78888
Q ss_pred eeec
Q 026973 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 8764
No 103
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.69 E-value=1.4e-18 Score=127.83 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|+++.++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+|.++++|+|.+++.+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988743
No 104
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=6e-17 Score=114.31 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=68.5
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CCeeEEecCccccCCccccccccccc------cc
Q 026973 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gip~--~~q~l~~~g~~L~d~~~l~~~~i~~~------~~ 66 (230)
|.|+|++++|+.+ ++++++++||.+||++| ++..|+|+ ++|+|+|+|+.|+|+.+|++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 79999999999999999 66778997 79999999999999999999999988 67
Q ss_pred eeeeeeecC
Q 026973 67 LHLVLRLRG 75 (230)
Q Consensus 67 i~l~~~~~~ 75 (230)
+||+++++.
T Consensus 97 mhlVlrl~g 105 (126)
T 1se9_A 97 MHVIIQAPV 105 (126)
T ss_dssp EEEEECCCS
T ss_pred EEEEeccCC
Confidence 898887753
No 105
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.69 E-value=2.8e-17 Score=124.82 Aligned_cols=84 Identities=90% Similarity=1.211 Sum_probs=80.2
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEeccee
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
-.|+|+|+..+|+++.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++.+|..
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eEEE
Q 026973 155 IFVK 158 (230)
Q Consensus 155 i~v~ 158 (230)
++++
T Consensus 184 ~fvk 187 (189)
T 3q3f_A 184 TFTK 187 (189)
T ss_dssp CCCC
T ss_pred ceEe
Confidence 7765
No 106
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.6e-17 Score=107.51 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=66.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
++++.++|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++|++...+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 46677899999999999999999999999999999999999999999999999999999999999987643
No 107
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=111.69 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=64.6
Q ss_pred CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CCeeEEecCccccCCcccccc--ccccccceeee
Q 026973 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gip~-~~q~l~~~g~~L~d~~~l~~~--~i~~~~~i~l~ 70 (230)
|+|+||+++|+ ++++++++++||.+||++|++. .|+|+ ++|+|+|+|+.|+|+.+|++| +|.++++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 6799999999999999999996 56665 999999999999999999999 99999999974
No 108
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.4e-17 Score=113.79 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=69.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998754
No 109
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.68 E-value=4.6e-17 Score=109.80 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.4
Q ss_pred CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCCeeEE---ecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+++.+ ++++++||.+||++|++.+|||+++|+|+ |+|+.|+|+.+|++|+|.++++|+|+..+
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 7899999 99999999999999999999999999999 99999999999999999999999998654
No 110
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.51 E-value=2.4e-18 Score=112.58 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=71.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 688999999999999999999999999999999999999999999999999999999999999999999988764
No 111
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.2e-16 Score=104.66 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
|+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7899998 8999999999999999999999999999999999999999999999999999999999998754
No 112
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=6.3e-17 Score=110.30 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=67.0
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. +|+++ .+++++++||.+||++|++.+|||+++|+|+|+|+.|.|+ +|++|+|.++++|+|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6899995 78999 6999999999999999999999999999999999999999 9999999999999998765
No 113
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.68 E-value=1.4e-16 Score=112.29 Aligned_cols=69 Identities=29% Similarity=0.610 Sum_probs=66.7
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+|+.+.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999996
No 114
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=6e-17 Score=110.70 Aligned_cols=77 Identities=27% Similarity=0.343 Sum_probs=72.6
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.|.|+|+.. |+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.|++||.
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 477888877 88999999999999999999999999999999999999999999999999999999999999998875
No 115
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.6e-16 Score=109.11 Aligned_cols=78 Identities=33% Similarity=0.435 Sum_probs=72.2
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
..|.|+|+..+|+ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.|.++|.
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 3478888887776 78999999999999999999999999999999999999999999999999999999999988874
No 116
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=108.81 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=66.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.++++.++|+++++++++++||.+||++|++.+||||++|+|++ .+..|+|+.+|++|+|.+++++||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 677888899999999999999999999999999999999999985 4444999999999999999999998765
No 117
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=109.40 Aligned_cols=78 Identities=27% Similarity=0.459 Sum_probs=73.2
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+...+
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 448889998889999999999999999999999999999999999999999999999999999999999999987654
No 118
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.66 E-value=7e-18 Score=121.29 Aligned_cols=77 Identities=96% Similarity=1.308 Sum_probs=0.6
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999996
No 119
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=3e-16 Score=111.97 Aligned_cols=77 Identities=30% Similarity=0.372 Sum_probs=68.4
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.|.|+|+.. |+.+.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+++|.+|||++|++|+++.+.+||.
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 467888877 88899999999999999999999999999999999999999999999999999999999999998875
No 120
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.8e-16 Score=110.32 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.7
Q ss_pred CEEEEEccCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCC-eeEEecCccccCCcccccccccccc
Q 026973 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gip~~~-q~l~~~g~~L~d~~~l~~~~i~~~~ 65 (230)
|+|+||..+| +++.+++++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 899999555 599999999999999 999999 9999999999999999999999999
Q ss_pred ceeeeeeec
Q 026973 66 TLHLVLRLR 74 (230)
Q Consensus 66 ~i~l~~~~~ 74 (230)
+||+..+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988653
No 121
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=107.26 Aligned_cols=82 Identities=29% Similarity=0.354 Sum_probs=72.5
Q ss_pred EEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEec
Q 026973 146 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 146 ~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
.+.....|.|+|+.. |+.+.+++++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+.
T Consensus 19 ~~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 19 FQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp ----CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred cCCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 334445688888877 7889999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 026973 226 RGG 228 (230)
Q Consensus 226 ~~g 228 (230)
++.
T Consensus 98 ~~~ 100 (101)
T 2klc_A 98 QNR 100 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 122
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=8e-17 Score=110.70 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=70.7
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC---------------CCcEEEEcCcccC-CCccHhhccccc
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~---------------~~q~L~~~g~~L~-d~~tL~~~~i~~ 139 (230)
.|+|+|+..+|+.+.++|++++||++||++|++..++|+ +.|+|+|+|+.|. |+.+|++|||.+
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 599999999999999999999999999999999999887 4569999999996 679999999999
Q ss_pred CCceEEEEEEecc
Q 026973 140 ESTLHLVLRLRGG 152 (230)
Q Consensus 140 ~~~i~l~~~~~~~ 152 (230)
|++|+++.++++.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999887654
No 123
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.5e-16 Score=107.36 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCC-ccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.++|++++||.+||++|+... +++|+|+|+|+.|+|+ .+|++|+|.++++||+..+.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999998 8899999999999999 999999999999999988653
No 124
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.1e-16 Score=109.03 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=71.4
Q ss_pred ceeeEEEeecc----ceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCC-CccccccCCCCCEEEEEEecc
Q 026973 152 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 152 ~~~i~v~~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~L~~~~i~~~~~i~l~~~~~ 226 (230)
.|.|+|+...+ +.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ ++|.+|+|++|++|+++.+.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 46777776543 6899999999999999999999999999999999999999877 799999999999999999999
Q ss_pred CCCC
Q 026973 227 GGQF 230 (230)
Q Consensus 227 ~g~~ 230 (230)
||.+
T Consensus 87 gg~~ 90 (102)
T 1v5o_A 87 VGLR 90 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8853
No 125
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.4e-16 Score=108.26 Aligned_cols=77 Identities=34% Similarity=0.447 Sum_probs=71.2
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.|.|+|+...++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|.+|+|++|++|+++.|+++|.
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 367888877775 78999999999999999999999999999999999999999999999999999999999988874
No 126
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.9e-16 Score=105.75 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.8
Q ss_pred CEEEEEccCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCCeeEEecCccccC-Cccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+. .|+.+.++++++ +||.+||++|+..+|+|+++|+|+|+|+.|.| +.+|++|+|.++++|++..+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899998 589999999996 99999999999999999999999999999998 568999999999999998755
No 127
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=105.98 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.8
Q ss_pred CEEEEEccCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCCeeEEec--CccccCCccccccccccccceee
Q 026973 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gip~~~q~l~~~--g~~L~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+++.|+.+ ++ +|++++||.+||++|++. .|+||++|+|.|. |+.|+|+.+|++|+|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988764 68 999999999999999995 8999999999976 89999999999999999999776
No 128
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.64 E-value=5.5e-16 Score=109.29 Aligned_cols=78 Identities=29% Similarity=0.584 Sum_probs=71.0
Q ss_pred CCeeeEEEec----------cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceE
Q 026973 75 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~----------~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~ 144 (230)
..++|.|+.+ +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4566666654 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecc
Q 026973 145 LVLRLRGG 152 (230)
Q Consensus 145 l~~~~~~~ 152 (230)
+++++++|
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99998876
No 129
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.9e-16 Score=107.82 Aligned_cols=71 Identities=21% Similarity=0.367 Sum_probs=65.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+ .+|+++.+++++++||.+||++|+..+|||+++|+|+|.|+.|+| .+|++|+|.++++|+|+...
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 678898 578999999999999999999999999999999999999999954 59999999999999997643
No 130
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=5.5e-16 Score=108.42 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=68.6
Q ss_pred ecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHh------HhCC--CCCCcEEEEcCcccCCCccHhhcccccC--Cc
Q 026973 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--ST 142 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~------~~~i--p~~~q~L~~~g~~L~d~~tL~~~~i~~~--~~ 142 (230)
+...|.|+|++..|+++++++++++||++||++|++ ..++ |+++|+|+|.|+.|+|+.+|++|+|..+ .+
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 456799999999999999999999999999999999 4464 6999999999999999999999999876 46
Q ss_pred eEEEEEEe
Q 026973 143 LHLVLRLR 150 (230)
Q Consensus 143 i~l~~~~~ 150 (230)
+|+++++.
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 77776654
No 131
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.64 E-value=1.6e-17 Score=122.08 Aligned_cols=77 Identities=96% Similarity=1.312 Sum_probs=0.0
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.|++||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 56888988999999999999999999999999999999999999999999999999999999999999999999985
No 132
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=1.5e-15 Score=107.18 Aligned_cols=79 Identities=25% Similarity=0.445 Sum_probs=70.7
Q ss_pred cceeeEEEeeccceE-EEEeeccchHHHHHHHh-----ccccCCCC--CceEEEEcCeecCCCCccccccCCCC------
Q 026973 151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ 216 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i-----~~~~gi~~--~~q~l~~~g~~l~d~~~L~~~~i~~~------ 216 (230)
.-+.|.++..+|+.+ ++++++++||.+||++| +.+.|+|+ ++|+|+|.|+.|+|+.||++|+|++|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 447888999999888 79999999999999999 55667887 79999999999999999999999998
Q ss_pred CEEEEEEeccCCC
Q 026973 217 STLHLVLRLRGGQ 229 (230)
Q Consensus 217 ~~i~l~~~~~~g~ 229 (230)
+++++++|++||+
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 6899999998875
No 133
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.7e-16 Score=106.27 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=70.9
Q ss_pred EEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeE
Q 026973 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
.|.|+ ..+|..++++++++.||.+||+++....++|+++|+|.|+|+.|.|+.||++|||.++.++||.++..++-..-
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~~p 96 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDLYP 96 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTTSC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCccCc
Confidence 45555 55688999999999999999999999999999999999999999999999999999999999999875544433
Q ss_pred EE
Q 026973 81 VK 82 (230)
Q Consensus 81 v~ 82 (230)
++
T Consensus 97 ~~ 98 (118)
T 2daf_A 97 VR 98 (118)
T ss_dssp CC
T ss_pred ce
Confidence 33
No 134
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=103.36 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=61.9
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEec--Cc---c-ccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---Q-LEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g~---~-L~d~~~l~~~~i~~~~~i~l~ 70 (230)
+.|+|+...+ .++++++.+++||.+||++|+..+|||+++|+|+|. |+ . ++|+++|++|||.++++|++.
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 3577887655 489999999999999999999999999999999997 33 3 489999999999999999986
No 135
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.61 E-value=3.7e-17 Score=123.28 Aligned_cols=70 Identities=29% Similarity=0.390 Sum_probs=0.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++++|++++++|++++||.+||++|++..|||+++|+|+|+|++|+|+.+|+ ++++|||++++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrG 70 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLG 70 (189)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999998 8899999988743
No 136
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.61 E-value=2.5e-15 Score=101.26 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=68.4
Q ss_pred CCeeeEEEeccCeeEee-ecCCCChHHHHHHHHHhHhCCCCCCcEEE---EcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i-~v~~~~tV~~lK~~i~~~~~ip~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|.+|++|+++...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 468899985 7889999 99999999999999999999999999999 99999999999999999999999887543
No 137
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.61 E-value=2.2e-15 Score=103.04 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=66.7
Q ss_pred CeeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhccc-ccCCceEEEEE
Q 026973 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~ 148 (230)
.|.|+|+...+ ..+++++++++||++||++|++++|+|++.|||+++|+.++|+.+|++||| ++|+++++++-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 36788887764 689999999999999999999999999999999999999999999999999 59999999864
No 138
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=104.25 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=64.4
Q ss_pred CCeeeEEEeccCe--eEeeecCCCChHHHHHHHHHhHh-CCC-CCCcEEEEcCcccCCCccHhhc--ccccCCceEEE
Q 026973 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~--~~~i~v~~~~tV~~lK~~i~~~~-~ip-~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~ 146 (230)
..|+|+|+..+++ .+.+++++++||++||++|++.. |+| +++|+|+|+|+.|+|+.+|++| +|.++++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 5699999999887 57889999999999999999974 555 5999999999999999999999 99999999874
No 139
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2e-15 Score=100.62 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.3
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3444678999999999999999999999999999999999999999999999999999999999988753
No 140
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=102.57 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=70.8
Q ss_pred CeeeEEE-eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 76 ~~~v~v~-~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+.|.|+ ..+++.+.++++++.||++||+.++...++|++.|+|+|+|+.|.|+.||++|||++|.+||++++....-
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPD 93 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCc
Confidence 3566666 56788899999999999999999999999999999999999999999999999999999999998876543
No 141
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.60 E-value=2.2e-15 Score=100.22 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=63.1
Q ss_pred EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-------cCccccCCccccccccccccceeeeee
Q 026973 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-------~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|.|.. .+++.+...+++++||.+||++|+..+||||++|+|.| .|+.|+|+++|++|||.++++||+.-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 455553 35567899999999999999999999999999999996 488999999999999999999999864
Q ss_pred e
Q 026973 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 142
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.60 E-value=1.9e-15 Score=122.73 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+.++|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 143
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=106.30 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=69.0
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhcc------ccCC--CCCceEEEEcCeecCCCCccccccCCCCC--EEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~gi--~~~~q~l~~~g~~l~d~~~L~~~~i~~~~--~i~l~ 222 (230)
|.|.+++..|+++++++++++||.+||++|+. +.|+ ++++|+|+|.|+.|+|+.+|++|+|+.|+ +++++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67888888899999999999999999999999 5577 48899999999999999999999999776 78899
Q ss_pred EeccCCC
Q 026973 223 LRLRGGQ 229 (230)
Q Consensus 223 ~~~~~g~ 229 (230)
.|.++++
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 9987654
No 144
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=5.1e-15 Score=102.93 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=68.9
Q ss_pred CCeeeEEEeccC---eeEeeecCC---------CChHHHHHHHHHhHh--CCCCCC-cEEEEcCcccCCCccHhhccccc
Q 026973 75 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g---~~~~i~v~~---------~~tV~~lK~~i~~~~--~ip~~~-q~L~~~g~~L~d~~tL~~~~i~~ 139 (230)
..|+|+|+..++ +.+.+++++ ++||.+||++|++.+ ++|+++ |+|+|+|+.|+|+.+|++|+|.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458999999888 788999554 499999999999999 999999 99999999999999999999999
Q ss_pred CCceEEEEEEe
Q 026973 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999987654
No 145
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=6.2e-15 Score=100.16 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.5
Q ss_pred EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCc---c----ccCCccccccccccccceeeee
Q 026973 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~---~----L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|+.... ..+++++++++||.+||++|+..+||||++|+|+|.|+ . ++|+++|++|+|.++++|++.-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567775443 58999999999999999999999999999999999883 2 5889999999999999999874
No 146
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1.3e-14 Score=98.76 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=68.5
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCC-CccccccCCCCCEEEEEEeccCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|+... +++|+|+|+|+.|+|+ .+|++|+|++|++|+++.+..+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 347888988889999999999999999999999997 8999999999999998 99999999999999999886543
No 147
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=1.1e-14 Score=98.53 Aligned_cols=79 Identities=16% Similarity=0.360 Sum_probs=74.9
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.+.|.|+..+|+.+.+++.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++++||+|+++.+++||++
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 4678888888999999999999999999999999999999999999999999999999999999999999999999964
No 148
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=5.2e-15 Score=102.84 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.9
Q ss_pred CEEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCCeeEEecCc-----------c----ccCCccccccccccc
Q 026973 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~g~-----------~----L~d~~~l~~~~i~~~ 64 (230)
|.|+|++.+|.. .++|+ +++||.+||++|+..+|||+++|+|++.|+ . ++|+.+|++|||.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999966 79999 999999999999999999999999998887 4 578899999999999
Q ss_pred cceeeeeee
Q 026973 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999998653
No 149
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=3.4e-15 Score=101.69 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=66.8
Q ss_pred CCeeeEEEeccCeeE-eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~-~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+ ..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|.+|++|+++...
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 35789998 478899 6999999999999999999999999999999999999999 9999999999999887544
No 150
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.2e-14 Score=98.38 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=66.7
Q ss_pred CCeeeEEEeccCeeEeeecCCC-----ChHHHHHHHHHhHhCCCCCCcEEEEcCcccCC-CccHhhcccccCCceEEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~-----~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~i~l~~~ 148 (230)
..|+|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|.+|++|+++.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 458899987 577889999995 99999999999999999999999999999988 66899999999999998765
Q ss_pred E
Q 026973 149 L 149 (230)
Q Consensus 149 ~ 149 (230)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.54 E-value=1.6e-14 Score=102.67 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=62.8
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC---c---c-ccCCccccccccccccceeeeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~---~-L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|+..++. .+++++++++||.+||++|+..+|||+++|+|+|.| + . ++|+.+|++|||.++++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35777776543 789999999999999999999999999999999987 3 2 47899999999999999999864
No 152
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.54 E-value=1.9e-14 Score=97.43 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=63.9
Q ss_pred cCCeeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc--Cc---cc-CCCccHhhcccccCCceEE
Q 026973 74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 74 ~~~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~--g~---~L-~d~~tL~~~~i~~~~~i~l 145 (230)
...+.|+|+...+ +.+.+++++++||++||++|+..+|+|++.|+|+|. |+ .| +|+.+|++|+|++|++|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 4557788877665 478999999999999999999999999999999997 44 34 8999999999999999988
Q ss_pred E
Q 026973 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 153
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=4.1e-14 Score=94.93 Aligned_cols=79 Identities=16% Similarity=0.397 Sum_probs=74.9
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.+.|.|+..+|+.+.+++.+++++..|+++++++.|++++.++|+|+|+.+.++.|+++|++++||+|.++.+++||++
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~ 83 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 83 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcc
Confidence 4678888888999999999999999999999999999999999999999999999999999999999999999999975
No 154
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=9.3e-15 Score=99.38 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=65.1
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..|+|+|+ .+++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+| .+|++|+|.++++|+++..
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 45788888 578899999999999999999999999999999999999999954 5999999999999988754
No 155
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.53 E-value=1e-14 Score=121.62 Aligned_cols=73 Identities=32% Similarity=0.562 Sum_probs=68.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCCeeEEecCccccCCccccccccccccce-eeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i-~l~~~~ 73 (230)
|+|+||+++|+++.++|++++||.+||++|+. ..|||+++|+|+|+|+.|+|+++|++|+|.++++| +|..+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 88999999999999999999999999999999 57799999999999999999999999999999998 565554
No 156
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2e-14 Score=97.77 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=62.0
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC---cc----ccCCccccccccccccceeeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~~----L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+.|+|+..++. .+++++++++||.+||++|+..+|||+++|+|+|.| +. ++|+.+|++|||.++++||+..
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 35677765443 789999999999999999999999999999999986 32 5899999999999999999874
No 157
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=2.8e-14 Score=94.89 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=58.8
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEc-------CeecCCCCccccccCCCCCEEEEEEec
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~-------g~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
..+.+...+++++||.+||++|+.++|+|++.|+|+|. |+.++|+++|.+|+|++|++||++-+.
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 34567899999999999999999999999999999964 778999999999999999999998654
No 158
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=98.26 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=65.4
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhcccccCCceEEEEEE
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
+|.++++.++|+.+.+++++++||++||++|++++|||+++|+|++ .+..|+|+.+|++|+|++|++++++++.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 4666666788999999999999999999999999999999999985 4444999999999999999999987654
No 159
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=96.39 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.3
Q ss_pred CeeeEEEeccCeeE--ee-ecCCCChHHHHHHHHHhH-hCCCCCCcEEEEc--CcccCCCccHhhcccccCCceEE
Q 026973 76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~--~i-~v~~~~tV~~lK~~i~~~-~~ip~~~q~L~~~--g~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.|.|+|++..|+.+ .+ ++++++||++||++|++. .++|+++|+|+|. |+.|+|+.+|++|+|.++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48999999988765 47 999999999999999995 7999999999976 89999999999999999998765
No 160
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=9.4e-14 Score=94.30 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=62.0
Q ss_pred CeeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc---c----cCCCccHhhcccccCCceEEE
Q 026973 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~---~----L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+.+.|..... ..+.+++++++||++||++|+..+|+|++.|+|+|.|+ . ++|+++|++|+|++|++|+++
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 45666665444 47899999999999999999999999999999999883 3 489999999999999999887
Q ss_pred E
Q 026973 147 L 147 (230)
Q Consensus 147 ~ 147 (230)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 161
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.49 E-value=6.7e-14 Score=113.59 Aligned_cols=77 Identities=92% Similarity=1.269 Sum_probs=71.9
Q ss_pred ecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
....|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999998775
No 162
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.47 E-value=5.6e-14 Score=93.76 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=63.6
Q ss_pred CEEEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCCeeEEec--Ccccc---CCccccccccccccceeeeee
Q 026973 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g~~L~---d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|++.+|+.. ++ +++++||.+||++|++.+|||+++|+|+|+ ++.|+ |+.+|++|||.++++|++...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 8999999999654 77 999999999999999999999999999986 47774 689999999999999998754
No 163
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.47 E-value=4.1e-15 Score=112.11 Aligned_cols=72 Identities=29% Similarity=0.416 Sum_probs=0.5
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
|.|+|++.+|+++.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|+ ++++|+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 578899889999999999999999999999999999999999999999999999999 899999999999985
No 164
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.8e-13 Score=92.42 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=71.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|+|+..+|+.+.+.|.+++++..|+++++++.|+|++.|+|+|+|+.|.++.|+++|++.++++|++..+..+
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999987643
No 165
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.45 E-value=3.1e-13 Score=91.21 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=70.1
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+.|.|+..+|+.+.+.+.+++++..|+++++++.|++++.++|+|.|+.|.++.|+.+|++++||+|+++.+++||
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 46677887788899999999999999999999999999999999999999999999999999999999999999998
No 166
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.43 E-value=1.6e-13 Score=114.53 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=71.5
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhcc---ccCCCCCceEEEEcCeecCCCCccccccCCCCCEE-EEEEecc
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~---~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i-~l~~~~~ 226 (230)
..|.|+|+...|+++.++|++++||.+||++|+. +.|+|+++|+|+|+|+.|+|+++|.+|+|++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 3478999999999999999999999999999999 66799999999999999999999999999999998 7777777
Q ss_pred CC
Q 026973 227 GG 228 (230)
Q Consensus 227 ~g 228 (230)
+|
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 167
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=3.9e-13 Score=91.36 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred eeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC---cc----cCCCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.|.|+..+.. .+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+.+|++|||.+|++|++..
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56777665543 688999999999999999999999999999999986 43 5899999999999999998864
No 168
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=3.7e-13 Score=92.39 Aligned_cols=78 Identities=15% Similarity=0.359 Sum_probs=73.6
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.+.|.|+..+|+.+.+.+.+++++..|+++++++.|++++.++|+|.|+.|.++.|+.+|++++||+|+++.+++||.
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 366778878889999999999999999999999999999999999999999999999999999999999999999996
No 169
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.41 E-value=2.4e-13 Score=111.73 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=66.5
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE---ecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|+||. +|+++++++++++||.+||++|++.+||||++|+|+ |.|+.|.|+.+|++|+|.++++++|+.....
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 5688885 799999999999999999999999999999999999 8999999999999999999999999876544
No 170
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.40 E-value=9.6e-13 Score=84.62 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|+.|.++.|++++++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999885
No 171
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.40 E-value=9.8e-13 Score=90.35 Aligned_cols=76 Identities=13% Similarity=0.329 Sum_probs=69.6
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+.|.|+. +|+.+.+.+..++++..|+++++++.|++++.++|+|+|+.+.++.|.++|++++||+|.++.+++||
T Consensus 31 ~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 31 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 36778888 89999999999999999999999999999999999999999999999999999999999999999998
No 172
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=3.6e-13 Score=93.47 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.1
Q ss_pred CeeeEEEeccCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEEcCc-----------c----cCCCccHhhccccc
Q 026973 76 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~-----------~----L~d~~tL~~~~i~~ 139 (230)
.|.|+|++.+|.. .++++ +++||.+||++|++.+++|++.|+|++.|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3889999999975 78999 999999999999999999999999998887 4 58899999999999
Q ss_pred CCceEEEEE
Q 026973 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++|++...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999988754
No 173
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.5e-12 Score=87.24 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=70.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecC
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|+|+..+|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|+.|.++.|++++++.++++|++.....+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 578899999999999999999999999999999999999999999999999999999999999999999887543
No 174
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.37 E-value=1.8e-12 Score=92.08 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=61.1
Q ss_pred eeeEEEeeccc-eEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC---e---e-cCCCCccccccCCCCCEEEEEEe
Q 026973 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g---~---~-l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
+.+.|+...+. .+.+++++++||++||++|+..+|+|+++|+|+|.| + . ++|+++|.+|||++|++|+++-.
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 45566654443 688999999999999999999999999999999976 3 2 47999999999999999998753
No 175
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.34 E-value=1.1e-12 Score=90.85 Aligned_cols=78 Identities=15% Similarity=0.385 Sum_probs=73.1
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.+.|.|+..+|+.+.+.+.+++++..|+++++++.|++++.++|+|.|+.|.++.|+.+|++++||+|.++..++||-
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 367778888889999999999999999999999999999999999999999999999999999999999999999983
No 176
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.34 E-value=1.6e-12 Score=86.67 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=61.7
Q ss_pred eeeEEEeccCeeEeee-cCCCChHHHHHHHHHhHhCCCCCCcEEEEc--CcccC---CCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~-v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~ 147 (230)
|+|.|+..+|+. .+. +++++||++||+.|++.+|+|+++|+|+|+ ++.+. |+.+|++|||.+|++|++..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 678999999965 477 999999999999999999999999999986 47774 68899999999999987763
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=4.4e-12 Score=85.50 Aligned_cols=74 Identities=15% Similarity=0.354 Sum_probs=69.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+|+..+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|++.....
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 56889889999999999999999999999999999999999999999999999999999999999999987653
No 178
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.33 E-value=5.6e-12 Score=80.98 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=66.1
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~ 222 (230)
+.|.|+..+|+.+.+.+.+++++..|+++++++.|++++.++|+|+|+.+.++.|++++++++||+|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 4677888889999999999999999999999999999999999999999999999999999999999875
No 179
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=6.3e-12 Score=82.20 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|++++.++|+|+|+.|.++.|++++++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999874
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.31 E-value=3.9e-12 Score=88.03 Aligned_cols=81 Identities=15% Similarity=0.397 Sum_probs=75.4
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|.|.|+..+|+.+.+.+.+++++..|+..++++.|+|++.++|+|.|+.|.++.|+++|++.+|++|+++....+|+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred e
Q 026973 154 Q 154 (230)
Q Consensus 154 ~ 154 (230)
.
T Consensus 104 ~ 104 (110)
T 2k8h_A 104 E 104 (110)
T ss_dssp -
T ss_pred c
Confidence 4
No 181
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=6.7e-12 Score=86.12 Aligned_cols=74 Identities=15% Similarity=0.354 Sum_probs=70.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeec
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+|+..+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|++.+...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999987653
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.28 E-value=2.3e-11 Score=79.46 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=68.5
Q ss_pred cCCeeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
...|.|.|+..+|+ .+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|++++++.+|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35688999999995 89999999999999999999999999999999999999999999999999999999875
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.27 E-value=7.1e-12 Score=86.05 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=71.2
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+. +|+.+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|.++|++.+|++|+++.++.||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3458899999 99999999999999999999999999999999999999999999999999999999999999887765
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=4.5e-12 Score=104.22 Aligned_cols=75 Identities=21% Similarity=0.440 Sum_probs=66.5
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE---EcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
.+.|+|+ .+|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.|.|+.+|++|+|++|++|+++.....
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 4778888 5789999999999999999999999999999999999 8999999999999999999999999865543
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=2.2e-11 Score=82.98 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=61.1
Q ss_pred EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC-------ccc-cCCccccccccccccceeee
Q 026973 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g-------~~L-~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|+. .+|..+...+++++||.+||.+|+..+|+|+..|+|+|.+ ..| +|..+|+.|++.++++||+.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 456664 4788999999999999999999999999999999999873 224 56799999999999999987
Q ss_pred ee
Q 026973 71 LR 72 (230)
Q Consensus 71 ~~ 72 (230)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.13 E-value=2.7e-10 Score=77.49 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=56.9
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcC-------eec-CCCCccccccCCCCCEEEEEEe
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g-------~~l-~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.+++.+...++.++||++||.+|+..+|+|+..|+|.|.+ ..| +|+++|.+|++.+|++|++.-.
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 3567888999999999999999999999999999999762 224 7889999999999999988664
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.11 E-value=4e-10 Score=78.04 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=69.8
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~ 227 (230)
+.|.|+..+|+...+.+..++++..|++..+++.|+++..++|+|+|..+.++.|..++++++||+|.+...+.|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 566777777888999999999999999999999999999999999999999999999999999999999988765
No 188
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.2e-10 Score=85.38 Aligned_cols=77 Identities=12% Similarity=0.270 Sum_probs=71.8
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
+.|.|. .+|+.+.+.|..++++..|++..+++.|+++..++|+|+|..+.++.|..++++++||+|.+...+.||.+
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~~ 134 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLP 134 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTGG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 566665 47889999999999999999999999999999999999999999999999999999999999999999974
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.5e-09 Score=82.60 Aligned_cols=76 Identities=13% Similarity=0.313 Sum_probs=70.8
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+.|.|+ .+|+...+.+.+++++..|++..+++.|++++.++|+|+|+.+.++.|..++++++||+|.+...+.||.
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 556665 3788899999999999999999999999999999999999999999999999999999999999999985
No 190
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=3.2e-09 Score=73.52 Aligned_cols=72 Identities=17% Similarity=0.421 Sum_probs=67.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+.|.|+..+|+...+.|.+++++..|+...+++.|+++..++|+|+|+.|.++.|.+++++.++++|.+...
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 467888888999999999999999999999999999999999999999999999999999999999998764
No 191
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.94 E-value=1.1e-10 Score=88.18 Aligned_cols=79 Identities=13% Similarity=0.285 Sum_probs=2.3
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.-+.|.| ..+|+...+++.+++++..|++..+++.|++++.++|+|+|+.+.++.|.+++++++||+|.++..+.||.+
T Consensus 20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~ 98 (227)
T 3v7o_A 20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT 98 (227)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence 3466777 567889999999999999999999999999999999999999999999999999999999999999999975
No 192
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.81 E-value=3.8e-08 Score=62.10 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=62.7
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCC-ceEEEEcCeecCCCCccccccCCCCCEEEEEE
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
.+.+++.....+.++++++.+|.+|-+..+.+.|||++ ..+|.|.|..|+++.++++|++.+||.|.++.
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 34555555667899999999999999999999999998 89999999999999999999999999998764
No 193
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.81 E-value=8.8e-09 Score=78.36 Aligned_cols=78 Identities=13% Similarity=0.300 Sum_probs=72.3
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...++|.|+ .+|..+.+.+.+++++..|+...+++.|+|++.++|+|.|+.+.++.|.+++++.+|++|+++....+|
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 455788886 488889999999999999999999999999999999999999999999999999999999999988766
No 194
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.79 E-value=5.1e-09 Score=78.08 Aligned_cols=79 Identities=11% Similarity=0.288 Sum_probs=73.4
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...+.|.|+ .+|..+.+.|.+++++..|+...+++.|+++..++|+|+|+.+.++.|.+++++.+|++|+++....+|.
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 445788886 4888899999999999999999999999999999999999999999999999999999999999998884
No 195
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.75 E-value=6.1e-08 Score=61.19 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.4
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEcCcccCCCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.+.+++.....+.+.++++++|.+|-+..+.+.+||++ ..+|.|.|..|+.+.++++|++.+|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 455666676777899999999999999999999999999 89999999999999999999999999998874
No 196
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.74 E-value=8.9e-09 Score=67.14 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCcc---c--cCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~---L--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.+.|+..+| ++.+++++++|+.+|+++|.+.++++++.|.+++.-.+ | .++.+|+++||.+|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6678888876 77788999999999999999999999999888865433 3 46789999999999998875
No 197
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.68 E-value=2.4e-08 Score=65.08 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=58.6
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc---cc--CCCccHhhcccccCCceEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---QL--EDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~---~L--~d~~tL~~~~i~~~~~i~l~ 146 (230)
..|.+.|++.+|. +.+++++++|+.+|+++|++.++++++.+.+.+... .+ .++.+|+++||+.|+.+++.
T Consensus 3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 3478889988884 678999999999999999999999988877764333 34 37789999999999999875
No 198
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.64 E-value=3.4e-09 Score=80.15 Aligned_cols=82 Identities=12% Similarity=0.312 Sum_probs=1.4
Q ss_pred eeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
..+...|.|.| ..+|..+.+.+.+++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++.+|++|+++....
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 33445688888 67888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cce
Q 026973 151 GGM 153 (230)
Q Consensus 151 ~~~ 153 (230)
||.
T Consensus 95 GG~ 97 (227)
T 3v7o_A 95 GGL 97 (227)
T ss_dssp -CC
T ss_pred CCc
Confidence 885
No 199
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.56 E-value=3e-07 Score=61.81 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=63.7
Q ss_pred eeeEEEeeccc-eEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEE
Q 026973 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~ 222 (230)
+.|.|+..+++ ...+.+..++++..|.+..+++.|+++...+|+|.|..+.++.|..++++++||+|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 56667766774 78999999999999999999999999999999999999999999999999999999874
No 200
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.53 E-value=3.1e-07 Score=61.05 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=45.4
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCcccc--CCcccccccc
Q 026973 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI 61 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~--d~~~l~~~~i 61 (230)
...+..+.+.+++++||..+|++|++.+|||+++|+|+|.|+.+. .+..-..|.-
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 346788999999999999999999999999999999999996654 4444445543
No 201
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.52 E-value=4.4e-06 Score=70.18 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=109.6
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC----CCCCCcEEEE------cCcccCCCccHhhcccccCCceEEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~----ip~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.+.|... +.+..+.++++.||.+....|.++.+ .++++.-|.+ .|.-|++.++|..|++.+++.+....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3444434 66778999999999999999988774 3577778887 33458888899999999999876664
Q ss_pred EEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCC-ceEEEEcC---------eecCCCCccccccCCCCC
Q 026973 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKES 217 (230)
Q Consensus 148 ~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~~~g---------~~l~d~~~L~~~~i~~~~ 217 (230)
+ .+.+.|..++|....+.+++.+|+.++-+.|+.+.|+... .+-|.+.. .-|+.++++.+.+.....
T Consensus 84 ~---~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 160 (371)
T 3ivf_A 84 K---QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE 160 (371)
T ss_dssp C---EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred c---eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence 3 3578899999999999999999999999999999998654 45565421 234667788887776666
Q ss_pred EEEEEEe
Q 026973 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~l~~~ 224 (230)
.+++..|
T Consensus 161 ~l~frvK 167 (371)
T 3ivf_A 161 TLLLRRK 167 (371)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 7655444
No 202
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.51 E-value=2.2e-07 Score=60.91 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=69.2
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEec
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
+||.+.|-..+++...+.+.+++++.++-++.|+++|+.++++.|.|+++.++-+.+++-.|+.+|+++.++-+.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 568899999999999999999999999999999999999999999999999999999999999999999987653
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.50 E-value=3.3e-07 Score=70.82 Aligned_cols=78 Identities=13% Similarity=0.316 Sum_probs=70.9
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
..+.|.|.. .++...+.+..++++..|+++.|++.|++++.++|.|.|+.+.++.+..+..++++|.|.+..++.||.
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 345566665 567889999999999999999999999999999999999999999999999999999999999999886
No 204
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.50 E-value=6e-07 Score=60.32 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=66.5
Q ss_pred cCCeeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEE
Q 026973 74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
...+.|.|+..+|. .+.+.+..+++...|....+++.|++++..++.|.|..+.++.|..++++.+|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34577888888884 78999999999999999999999999999999999999999999999999999999874
No 205
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.40 E-value=3.5e-08 Score=81.38 Aligned_cols=80 Identities=13% Similarity=0.296 Sum_probs=0.4
Q ss_pred EecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 149 ~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+..-+.+.|+. .|+...+++..++++..|+++.+++.|++++.++|.|+|+.+.++.|.+++++++||+|.+..++.||
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 33445666665 57788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 026973 229 Q 229 (230)
Q Consensus 229 ~ 229 (230)
.
T Consensus 97 ~ 97 (360)
T 3ix6_A 97 M 97 (360)
T ss_dssp C
T ss_pred H
Confidence 4
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-06 Score=56.98 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=63.7
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
+.|.|+ ..|....+.+..++....|.+..|++.|++++..+++|+|..+.++.|.++.++++||+|.++.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 455666 4678899999999999999999999999999999999999999999999999999999998754
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.28 E-value=4e-06 Score=54.88 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=67.9
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
..|.|.|-..+++...+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.+++-.|+.+|+.+.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789998999999999999999999999999999999999999999999999999999999999999988743
No 208
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.26 E-value=1.2e-07 Score=78.25 Aligned_cols=83 Identities=13% Similarity=0.317 Sum_probs=0.5
Q ss_pred eeeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEE
Q 026973 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 149 (230)
.+.+...+.|.|+. +|+...+.+..++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++.+|++|.++...
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 34445667888876 67788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecce
Q 026973 150 RGGM 153 (230)
Q Consensus 150 ~~~~ 153 (230)
.+||
T Consensus 94 ~g~~ 97 (360)
T 3ix6_A 94 IGGM 97 (360)
T ss_dssp ---C
T ss_pred CchH
Confidence 8885
No 209
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.25 E-value=3.9e-05 Score=64.34 Aligned_cols=133 Identities=24% Similarity=0.367 Sum_probs=102.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhC----CCCCCeeEEec------CccccCCccccccccccccceeeeeeecCCeee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g----ip~~~q~l~~~------g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
+-+.++.++|+.||.|+-..|.++.. .+.++-.|++. |.=|.++++|..|++.+++.+....+ .+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~---~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK---QRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC---EEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc---eeEE
Confidence 67889999999999999999977764 46777788873 23388899999999999998887654 4788
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEcC---------cccCCCccHhhcccccCCceEE
Q 026973 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~~~g---------~~L~d~~tL~~~~i~~~~~i~l 145 (230)
.|..++|....+.+++.+|+.++-..|+.+.|+... ..-|.+.. .-|+..+++.+.+......+++
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 999999999999999999999999999999997643 34554321 2345566777666544444443
No 210
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.20 E-value=2.6e-06 Score=59.93 Aligned_cols=70 Identities=27% Similarity=0.400 Sum_probs=58.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------CeeEEe
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-------------------------------------~q~l~~ 45 (230)
+.|++++|...++.|+.+.||.+++..|++..||+.. +|+|..
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999965 344432
Q ss_pred --cCccccCCccccccccccccceeeeee
Q 026973 46 --AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 46 --~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+.-|+++.+|.++||.+++++.|.-+
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 124577899999999999999777543
No 211
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.19 E-value=8.6e-06 Score=53.83 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=66.1
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEE
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
.+.|.|+. +|....+.+..++....|....+++.|++++..++.|.|..+.++.|.+++++.+|++|.+++-
T Consensus 21 ~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 21 LFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred eEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 47778874 6788899999999999999999999999999999999999999999999999999999988753
No 212
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.11 E-value=5.6e-06 Score=63.88 Aligned_cols=82 Identities=12% Similarity=0.305 Sum_probs=71.9
Q ss_pred eeecCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+.+...+.|.|.. ++..+.+.+..++++..|+...+++.|+|++.++++|.|+.+.++.|..+..+.++++|.+.....
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 3444567788876 677788999999999999999999999999999999999999999999999999999999987776
Q ss_pred cce
Q 026973 151 GGM 153 (230)
Q Consensus 151 ~~~ 153 (230)
+|.
T Consensus 95 Gg~ 97 (209)
T 3uf8_A 95 GGS 97 (209)
T ss_dssp TCC
T ss_pred ccc
Confidence 653
No 213
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.10 E-value=6.3e-05 Score=65.92 Aligned_cols=183 Identities=11% Similarity=0.209 Sum_probs=129.3
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC-cc-------ccC-----Cccccccccccccceeeeeee------
Q 026973 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQ-------LED-----GRTLADYNIQKESTLHLVLRL------ 73 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g-~~-------L~d-----~~~l~~~~i~~~~~i~l~~~~------ 73 (230)
.++.|...+|+.+||+.|.+.+|+|+++|||+... ++ +.+ ..++.++.- .++.+.+.+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 46899999999999999999999999999998431 11 111 123333211 22233333211
Q ss_pred -----------cCCeeeEEEecc--CeeE----eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc------CcccC-CC
Q 026973 74 -----------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 129 (230)
Q Consensus 74 -----------~~~~~v~v~~~~--g~~~----~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~------g~~L~-d~ 129 (230)
...+-|++|..+ .+++ .+-++.+++|++|-..|.+..|+|++.-..+|. ...|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 123777777654 2333 356888999999999999999999987655554 24466 57
Q ss_pred ccHhhc--ccccCCceEEEEEEecc------------------eeeEEEe---eccceEEEEeeccchHHHHHHHhcccc
Q 026973 130 RTLADY--NIQKESTLHLVLRLRGG------------------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 186 (230)
Q Consensus 130 ~tL~~~--~i~~~~~i~l~~~~~~~------------------~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~~~ 186 (230)
.|+.++ ++.+|+.|.+-...... +.+.++. .+...+.++++...|-.++-++|.+..
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 99999988666543311 3333332 235568999999999999999999999
Q ss_pred CCCCCceEEE
Q 026973 187 GIPPDQQRLI 196 (230)
Q Consensus 187 gi~~~~q~l~ 196 (230)
++.|...+|.
T Consensus 277 ~~dP~~lRf~ 286 (530)
T 2ylm_A 277 NTDPMLLQFF 286 (530)
T ss_dssp TSCGGGEEEE
T ss_pred CCCchhEEEE
Confidence 9999998885
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.09 E-value=4e-06 Score=58.97 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=58.0
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCC-ceEEEE-----------------------------------
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----------------------------------- 197 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~~----------------------------------- 197 (230)
.+.|+.++|+..++.|+.+.+|.+++..||++.|++.. .+-|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47899999999999999999999999999999998643 344432
Q ss_pred ---cCeecCCCCccccccCCCCCEEEEEEe
Q 026973 198 ---AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 198 ---~g~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.+.-|+++++|.++||.+++++.+-+|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 114568899999999999999866554
No 215
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.07 E-value=5e-07 Score=76.46 Aligned_cols=76 Identities=12% Similarity=0.334 Sum_probs=0.0
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+.|.|.. .++...+.+..++++..|++..+++.|+++..++|.|+|+.+.++.|..++++++|++|.+...+.||.
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 4555554 567788999999999999999999999999999999999999999999999999999999999999885
No 216
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.06 E-value=1e-05 Score=53.68 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=50.4
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeec--CCCCccccccC-CCCCEEEEEEe
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI-QKESTLHLVLR 224 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l--~d~~~L~~~~i-~~~~~i~l~~~ 224 (230)
..+..+.+.+.+.+|+..+|+.|++++|||++.|+|+|.|+.+ +++.+-..|-- .+..-|.+..+
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 3467889999999999999999999999999999999999654 55555555532 34455655554
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.89 E-value=1.6e-06 Score=73.29 Aligned_cols=82 Identities=11% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEeccee
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
..+.|.|+. ++....+.+..+++...|+...+++.|+++..+++.|+|+.+.++.|.+++++.+|++|.+.....+|..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 446777766 6777889999999999999999999999999999999999999999999999999999999999888865
Q ss_pred eEE
Q 026973 155 IFV 157 (230)
Q Consensus 155 i~v 157 (230)
..+
T Consensus 108 ~~~ 110 (389)
T 4da1_A 108 LYF 110 (389)
T ss_dssp ---
T ss_pred cce
Confidence 554
No 218
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.74 E-value=0.00014 Score=47.50 Aligned_cols=69 Identities=19% Similarity=0.371 Sum_probs=59.1
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCccccccCCCCCEEEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~~L~~~~i~~~~~i~l~ 222 (230)
..|.++.++|+...-.+..++|+.+|..-|.. .+.++..+.|+ |..+.+ +.+++|.+.|+.+++++.+-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 46788889999888899999999999999988 46778889998 667777 56789999999999999764
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.74 E-value=8e-05 Score=48.05 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=55.3
Q ss_pred EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-----eeEEecCccccCCccccccccccccceee
Q 026973 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-----q~l~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (230)
.|++.. ..|+++.++++...||.+|.+.+-+..+++... .+..-.+..|.++..|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 456654 478999999999999999999999999987631 22223467889999999999999998764
No 220
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.66 E-value=0.0015 Score=57.21 Aligned_cols=198 Identities=12% Similarity=0.118 Sum_probs=123.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ec---Cc---c--ccCCcccccccccc---c-cceeeee-e--
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA---GK---Q--LEDGRTLADYNIQK---E-STLHLVL-R-- 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~---g~---~--L~d~~~l~~~~i~~---~-~~i~l~~-~-- 72 (230)
+...|.++++...|-.++-++|.+..|+.|...||+ .+ +. . ...+.+|.+.=-.. . ..+...+ .
T Consensus 251 ~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ip 330 (530)
T 2ylm_A 251 NDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMK 330 (530)
T ss_dssp TCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSC
T ss_pred CCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCC
Confidence 356799999999999999999999999999998876 22 21 1 12234444321111 1 1122111 1
Q ss_pred -----ecCCeeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCC---CCCcEEE--EcCc---ccCCCccHhhccc
Q 026973 73 -----LRGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAGK---QLEDGRTLADYNI 137 (230)
Q Consensus 73 -----~~~~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~ip---~~~q~L~--~~g~---~L~d~~tL~~~~i 137 (230)
-...+.|+....+. ..+.+-++.+.||++|-..++++.+++ ....++. ++++ .+.++.++++..-
T Consensus 331 l~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 331 ITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp HHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred HHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 11345665543332 356778899999999999999999987 4566765 6664 5667777776543
Q ss_pred ccCCceEEEEEEec--------ceeeEEEe-------eccceEEEEeeccchHHHHHHHhccccCCCCC---ceE--EEE
Q 026973 138 QKESTLHLVLRLRG--------GMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQR--LIF 197 (230)
Q Consensus 138 ~~~~~i~l~~~~~~--------~~~i~v~~-------~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~---~q~--l~~ 197 (230)
.....+.+-.-+.. .+.|.|.. ..|..+.+.+.+..|+.++|+.|.+++|++.. .++ ++-
T Consensus 411 ~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~ 490 (530)
T 2ylm_A 411 ATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVM 490 (530)
T ss_dssp CTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEE
T ss_pred cccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEE
Confidence 22333333221211 12233322 23667888999999999999999999998743 444 444
Q ss_pred cCe--ecCCCC
Q 026973 198 AGK--QLEDGR 206 (230)
Q Consensus 198 ~g~--~l~d~~ 206 (230)
.++ .++|+.
T Consensus 491 ~~~~~yl~d~d 501 (530)
T 2ylm_A 491 MGRHQYINEDE 501 (530)
T ss_dssp TTEEEECCTTT
T ss_pred CCcccccCCcc
Confidence 443 455543
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.65 E-value=0.00039 Score=45.35 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=58.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCcccc---CCccccccccccccceeeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|.|+..+|..+.-....++||.+|...|.. .+.++....|. |..+.+. .+.+|.+.|+.+.+++.+..
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 5789999999999999999999999999998 67777777887 5567774 46899999999988887753
No 222
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.65 E-value=0.00013 Score=47.03 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=51.6
Q ss_pred eccceEEEEeeccchHHHHHHHhccccCCCC--Cc-e--EEEEcCeecCCCCccccccCCCCCEEEE
Q 026973 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQ-Q--RLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~--~~-q--~l~~~g~~l~d~~~L~~~~i~~~~~i~l 221 (230)
..++.+.+.++...|+.+|.+.+.+.++++. .. . +..-.+..|.++..|++|+|.+||.+.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3688999999999999999999999988643 22 3 3335778899999999999999999875
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.42 E-value=0.00058 Score=47.95 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=61.1
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCccc--CC-CccHhhcccccCCceEEE
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L--~d-~~tL~~~~i~~~~~i~l~ 146 (230)
.+...|.|+.++|..+.-.++.++||.+|..-|... +.+.....|+ |..+.+ .| +.+|.+.|+.+.+++.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 456789999999998999999999999999999887 7777788887 667878 33 789999999998888665
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.26 E-value=0.0022 Score=43.95 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=59.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCcccc--C-Cccccccccccccceeeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d-~~~l~~~~i~~~~~i~l~~ 71 (230)
+|.|+..+|..+.-..+.++||.+|...|....+.+.....|. |..+.+. | +.||.+.|+.+.+++.+..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 5789999999999999999999999999999988876666666 5567776 3 6899999999988877754
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.25 E-value=0.0018 Score=44.39 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=61.2
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCccHhhcccccCCceEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~ 147 (230)
+..+|.|+.++|..+.-.++.++||.++..-|....+.+.....|. |..+.+. .+.||.+.|+.+.+++.+..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 3468888999999999999999999999999999888777788887 5677775 37799999999987776553
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.14 E-value=0.0022 Score=44.98 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=58.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCccc--cC-Cccccccccccccceeeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L--~d-~~~l~~~~i~~~~~i~l~~ 71 (230)
+|.|+..+|..+.-....++||.+|...|... +.++....|+ |..+.+ .| +.+|.+.|+.+.+++.+..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 57899999999999999999999999999887 7777777776 567878 33 6999999999988877754
No 227
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0011 Score=42.34 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=55.6
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEE---cCeecCCCCccccccCCC
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~---~g~~l~d~~~L~~~~i~~ 215 (230)
+.+.|+....+..-+.|++..+.++|--.||++..+.|+...|.. .+.+|+-+++|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456677777888999999999999999999999999999999984 457899999999999987
No 228
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.91 E-value=0.0051 Score=38.89 Aligned_cols=60 Identities=12% Similarity=0.324 Sum_probs=48.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|+..+.....++++++.||.+|-+ ..|+|++.-....||+.+..+.. .+++++.+.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHHC------CCCCEEEEE
Confidence 8999999955667799999999999887 88999998877789988876662 246666654
No 229
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.0036 Score=40.04 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=57.7
Q ss_pred cCCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE---cCcccCCCccHhhccccc
Q 026973 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~---~g~~L~d~~tL~~~~i~~ 139 (230)
...+++.|+....++..+.|+|..+.++|--.|+++..+.+....|.. .+.+|+-+++|.+|||++
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 355777787778888899999999999999999999999999999984 346788899999999996
No 230
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.82 E-value=0.0037 Score=42.79 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=58.5
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE--EcCeecC--CCCccccccCCCCCEEEEEEe
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~--d~~~L~~~~i~~~~~i~l~~~ 224 (230)
..|.++.++|+.+.-.+..++||.+|..-|... +..+..+.|+ |..+.+. .++||.+.|+.+.+++.+..+
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 467888889998888999999999999999865 5567788887 6677774 579999999999999876543
No 231
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.76 E-value=0.0043 Score=47.92 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=54.5
Q ss_pred eEEEEeeccchHHHHHHHhccccCCCCC-ceEEE--E-cC--eecCC-CCccccccCCCCCEEEEEEeccCCCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~--~-~g--~~l~d-~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.+.+.++..+|+.+|++.+++.++++++ +.||- + .+ ..|++ +++|.++++.+|..|.+=.|...|.|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3567788999999999999999999987 68775 2 22 34554 67999999999999999999888876
No 232
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.53 E-value=0.012 Score=40.18 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=56.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE--ecCcccc--CCccccccccccccceeeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|-|+..+|..+.-....++||.+|...|... +..+....|. |-.+.+. .+.||.+.|+.+.+++.+..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 67899999999999999999999999999965 5555556665 6677776 36999999999988877654
No 233
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.52 E-value=0.012 Score=45.81 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=55.4
Q ss_pred eEEEEeeccchHHHHHHHhccccCCCCC-ceEEE-Ec----CeecC-CCCccccccCCCCCEEEEEEeccCCCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA----GKQLE-DGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~-~~----g~~l~-d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.+...++..+|+.+|++.+++.++++++ ..||- +. ...|. ++.+|.++++.+|..|.+=.|...|.|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3556778999999999999999999987 68876 33 23555 468999999999999999888888876
No 234
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.24 E-value=0.013 Score=41.19 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=55.5
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEE--EcCcccCC-CccHhhcccccCCc
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 142 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~ip~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~ 142 (230)
+..+|.|+..+|..+.-.++.++||.+|..-|.... +.+.....|+ |..+.+.| +.||.+.|+.+...
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 457889999999989999999999999999998864 3556667777 56778865 68999999998543
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.98 E-value=0.017 Score=40.63 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=52.6
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhh-CCCCCCeeEE--ecCccccC-Cccccccccccccc
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~l~--~~g~~L~d-~~~l~~~~i~~~~~ 66 (230)
+|.|+..+|..+.-..+.++||.+|...|.... +.+.....|+ |-.+.+.| +.||.+.|+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 578999999999999999999999999999974 3445555665 56678876 59999999987443
No 236
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.73 E-value=0.18 Score=31.21 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=46.9
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|.|.+.-.. ....++++...|+.+|.+.+ ++++....+..+|.....+. -+++||.|.++.-..||
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 4556555322 23456777778999998877 45677777778998876544 68999999877666665
No 237
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.65 E-value=0.069 Score=34.00 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=50.9
Q ss_pred EEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe
Q 026973 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.-.++-+.++..||+.++.+.|++.+.+.+...+..|+++++|-+.|++-...+.+.+.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 34566677889999999999999999999988887799999999999998888877654
No 238
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.65 E-value=0.038 Score=35.17 Aligned_cols=60 Identities=18% Similarity=0.380 Sum_probs=53.0
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeee
Q 026973 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+.-.++-.+++..||+.++.+.|++.+.-.+++++..|+++++|.+.++..+..+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 344667788999999999999999999999999998899999999999999888777653
No 239
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.59 E-value=0.051 Score=38.26 Aligned_cols=65 Identities=32% Similarity=0.525 Sum_probs=47.5
Q ss_pred cceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEE----cCe-ecCCC-------------CccccccCCC
Q 026973 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~----~g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-+.. |.| ++..-|-| .|+ .|.|. .||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568899999999999999998864 444 34566665 233 35432 3899999999
Q ss_pred CCEEEEEEecc
Q 026973 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~l~~~~~ 226 (230)
|+++.++.|..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999887754
No 240
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.51 E-value=0.057 Score=36.64 Aligned_cols=63 Identities=38% Similarity=0.488 Sum_probs=44.7
Q ss_pred cceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEEc----CeecCCC-------------CccccccCCCC
Q 026973 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~~----g~~l~d~-------------~~L~~~~i~~~ 216 (230)
+..+++.+-..+||.++|++|-... |.| ++.+.|-|. |+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999998753 444 345667662 3445331 58999999999
Q ss_pred CEEEEEEe
Q 026973 217 STLHLVLR 224 (230)
Q Consensus 217 ~~i~l~~~ 224 (230)
+++-++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99977654
No 241
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.43 E-value=0.035 Score=42.77 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=50.9
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEE-Ec-C---cccCC-CccHhhcccccCCceEEEEEEec
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-G---KQLED-GRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~-~~-g---~~L~d-~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
.+.+.++..+||.+|++.+...+++|.+ ..||- +. . ..|.+ +.||.++++.++..|.+-++...
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3567889999999999999999999997 68876 22 2 34555 57999999999998877666443
No 242
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.33 E-value=0.033 Score=35.08 Aligned_cols=67 Identities=13% Similarity=0.359 Sum_probs=48.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecce
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 153 (230)
|+|+|+..+.....++++...||++|-+. .++|+.......||+.+..+. +.+|+.+.+.--..||+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~~ 67 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGGL 67 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC-
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeecccc
Confidence 56777766444556899999999998754 799999997778998876554 33588887765544544
No 243
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.91 E-value=0.13 Score=31.82 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=46.9
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
.|+|+|....++ ..++++...||.+|.+.+ ++++....+..||.....+. -+++|+.|.+.....|
T Consensus 4 ~m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~G 69 (70)
T 1ryj_A 4 GMKFTVITDDGK-KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYG 69 (70)
T ss_dssp CEEEEEEETTEE-EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTC
T ss_pred eEEEEEeCccCc-eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecccc
Confidence 477777654432 356777788999999876 56777776778888876544 6889999988754433
No 244
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.87 E-value=0.2 Score=34.77 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=47.1
Q ss_pred ccceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEE-cC---e-ecCCC-------------CccccccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQ 214 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~-~g---~-~l~d~-------------~~L~~~~i~ 214 (230)
++..+++++-..+||.++|++|-... +.| ++.+.|-| .| + .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999998753 443 35667776 22 3 24331 589999999
Q ss_pred CCCEEEEEEec
Q 026973 215 KESTLHLVLRL 225 (230)
Q Consensus 215 ~~~~i~l~~~~ 225 (230)
+|+++-+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999887653
No 245
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.66 E-value=0.069 Score=41.50 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=50.4
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCC-CcEEE-EcC----cccCC-CccHhhcccccCCceEEEEEEec
Q 026973 89 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FAG----KQLED-GRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~-~~g----~~L~d-~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+.+.++..+||.+|++.+...+++|.+ ..||. +.+ ..|.| +.+|.++++.++..|.+-.+...
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 456779999999999999999999997 68887 332 34655 68999999999998877665443
No 246
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.63 E-value=0.11 Score=35.23 Aligned_cols=62 Identities=35% Similarity=0.432 Sum_probs=43.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhh--CCCCC------CeeEEec----CccccC-------------Cccccccccccc
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKE--GIPPD------QQRLIFA----GKQLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~--gip~~------~q~l~~~----g~~L~d-------------~~~l~~~~i~~~ 64 (230)
+..+.+.|-.-+||.++|+||-+.. |.|.+ ...|-|. |+.|.| =+||++|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568889999999999999998863 45543 3445552 344544 268999999999
Q ss_pred cceeeee
Q 026973 65 STLHLVL 71 (230)
Q Consensus 65 ~~i~l~~ 71 (230)
+++.|..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 247
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.26 E-value=0.15 Score=35.88 Aligned_cols=64 Identities=31% Similarity=0.524 Sum_probs=45.1
Q ss_pred eeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEE-c---Cc-ccCCC-------------ccHhhcccccC
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 140 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~--~ip------~~~q~L~~-~---g~-~L~d~-------------~tL~~~~i~~~ 140 (230)
+.+++.|-..+||.++|++|-+.. |.| ++..-|-| . |+ .|.|. .||+.|++.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999998754 343 33445554 1 22 24442 38999999999
Q ss_pred CceEEEEEEe
Q 026973 141 STLHLVLRLR 150 (230)
Q Consensus 141 ~~i~l~~~~~ 150 (230)
+++.++.+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9998876543
No 248
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.13 E-value=0.11 Score=33.27 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=39.7
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g 123 (230)
.+.|.|... -++.+.++++.+..+|+.+|+++.++|++...|.|..
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 356666544 5899999999999999999999999999999999876
No 249
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.89 E-value=0.13 Score=35.22 Aligned_cols=64 Identities=31% Similarity=0.480 Sum_probs=46.3
Q ss_pred cceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEE-cC---e-ecCC--C-----------CccccccCCC
Q 026973 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED--G-----------RTLADYNIQK 215 (230)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~-~g---~-~l~d--~-----------~~L~~~~i~~ 215 (230)
...++++|-..+||.++|++|-... |.| ++.+.|-| .| + .|.| . .||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457888889999999999998753 444 34566665 23 2 2332 1 5899999999
Q ss_pred CCEEEEEEec
Q 026973 216 ESTLHLVLRL 225 (230)
Q Consensus 216 ~~~i~l~~~~ 225 (230)
|+++.++.|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999988775
No 250
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.85 E-value=0.15 Score=32.73 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.2
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+.||..=..++.|.|+++.+..+|..+|.+++++|++.-.|.|..
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 344444237999999999999999999999999999998999865
No 251
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.44 E-value=0.34 Score=30.20 Aligned_cols=68 Identities=12% Similarity=0.266 Sum_probs=45.2
Q ss_pred CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCC--CCeeEEecCccccCCccccccccccccceeeeeee
Q 026973 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~--~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+|+....- .-++++ ...||.+|.+.+....++.. ..-.+..||+...+ .+..+.+++++.+....
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 88999877542 135677 67899999999987544332 23345567766443 34567888888876543
No 252
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.37 E-value=0.088 Score=37.01 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEec
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~ 46 (230)
..++.|...+|+.+||+.|.+.+|+|+++|||...
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 34688999999999999999999999999999954
No 253
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.24 E-value=0.5 Score=31.17 Aligned_cols=72 Identities=13% Similarity=0.296 Sum_probs=47.7
Q ss_pred CCeeeEEEecc------C-eeEeeecCCCChHHHHHHHHHhHhC-C----------CCCCcEEEEcCcccCCCccHhhcc
Q 026973 75 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 75 ~~~~v~v~~~~------g-~~~~i~v~~~~tV~~lK~~i~~~~~-i----------p~~~q~L~~~g~~L~d~~tL~~~~ 136 (230)
+.|.|.|+... | ....++++...||.+|.+.+..... + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 45777777542 3 3567788788899999999987642 1 1234556678877653 567
Q ss_pred cccCCceEEEEEEec
Q 026973 137 IQKESTLHLVLRLRG 151 (230)
Q Consensus 137 i~~~~~i~l~~~~~~ 151 (230)
+++|+.|.+.....|
T Consensus 83 L~dGDeV~i~ppv~G 97 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSG 97 (98)
T ss_dssp CCTTCEEEEESCC--
T ss_pred CCCCCEEEEECCCCC
Confidence 889999887754433
No 254
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.23 E-value=0.65 Score=32.18 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=47.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhh--CCCC------CCeeEEe-cC---c-cccC-------------Cccccccccc
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-AG---K-QLED-------------GRTLADYNIQ 62 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~--gip~------~~q~l~~-~g---~-~L~d-------------~~~l~~~~i~ 62 (230)
++..+.+.|-.-+||.++|+||-+.. |.|. +...|-| .| + .|.| =.||+.|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45678899999999999999998873 4554 3455665 23 2 2543 2689999999
Q ss_pred cccceeeeee
Q 026973 63 KESTLHLVLR 72 (230)
Q Consensus 63 ~~~~i~l~~~ 72 (230)
+++++.|..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 255
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.60 E-value=0.5 Score=30.61 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=43.8
Q ss_pred ccceEEEEeecc-chHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~-~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+. +++++. .||.+|.+.+ ++++....+..+|..... ....+.-+++||.|.++.-..||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcccccC
Confidence 4553 445665 7999998876 566777777789987744 35667789999999887766665
No 256
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.36 E-value=0.95 Score=29.79 Aligned_cols=60 Identities=10% Similarity=0.256 Sum_probs=40.3
Q ss_pred eEEEEeeccchHHHHHHHhccccC-C----------CCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~g-i----------~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...+++.+..||.+|.+.+...+. + ......+..||+.... +.-+++||.|.++--..||
T Consensus 28 ~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 28 EEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEESCC---
T ss_pred eEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEECCCCCC
Confidence 566777778899999999877641 1 1234556678876642 5678999999876655555
No 257
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.27 E-value=0.39 Score=31.12 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCeeeEEEeccCeeEeeecCCC-ChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 75 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~-~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
..|+|++ +|+ .++++.. .||.+|.+.+ ++++....+..||..+.. ....+.-+++|+.|.++....+|
T Consensus 19 ~~M~I~v---NGe--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQL---NGK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEE---TTE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEE---CCE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcccccC
Confidence 4566665 465 4555676 8999998876 567777777788877643 23456679999999888655443
No 258
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.69 E-value=0.59 Score=31.97 Aligned_cols=62 Identities=32% Similarity=0.509 Sum_probs=45.1
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh--hCCCCC------CeeEEe-cC---c-cccC-------------Cccccccccccc
Q 026973 11 KTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF-AG---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~--~gip~~------~q~l~~-~g---~-~L~d-------------~~~l~~~~i~~~ 64 (230)
..+.+.|-.-+||.++|+||-+. .|.|.+ ...|-| .| + .|.| =+||++|++.++
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 45888888999999999999876 355554 334555 23 2 2433 268999999999
Q ss_pred cceeeeee
Q 026973 65 STLHLVLR 72 (230)
Q Consensus 65 ~~i~l~~~ 72 (230)
+++.++.+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988754
No 259
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=91.67 E-value=0.72 Score=36.80 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=54.5
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCc-eEEEE---cCe--ecCCCCccccccCCCCCEEEEEEec
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~l~~---~g~--~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
+.+.|...+| +..+.+++.+|+.++-+.|+++.|+.... +-|.+ +|. -|+.++++.+.+++.+....+.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4567777887 67799999999999999999999986654 44544 332 4678888988877777766666653
No 260
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=91.32 E-value=0.39 Score=29.96 Aligned_cols=61 Identities=7% Similarity=0.134 Sum_probs=46.2
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+|+.+.+ +..|+.+|-+. .++++....+..+|..+.. ....+.-+++||.|.++.-..||+
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 4554444 56799988764 3677888887799988743 457788999999999888888875
No 261
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.07 E-value=1.5 Score=27.08 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=39.9
Q ss_pred EEEeeccchHHHHHHHhccccCCCC--CceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi~~--~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+++ +..|+.+|.+.+..+.++.. ....+.-||+...+ .+.-+++||.|.++--..||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3556 56799999999987644322 44556677776432 35568999999887766666
No 262
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=91.00 E-value=1.1 Score=29.07 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=35.9
Q ss_pred EEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEecC
Q 026973 3 IFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 47 (230)
Q Consensus 3 v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~g 47 (230)
|.|| ..+|..+.+.++++.+..+|.+++.+..+++..+ -.+.|..
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 3444 3478999999999999999999999999998655 4555654
No 263
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.72 E-value=0.87 Score=29.12 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=29.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
+|.| ..++..|.+.|+++.+..+|+.+|..+..+.
T Consensus 14 KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 14 KIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred EEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3444 3467899999999999999999999999994
No 264
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=90.71 E-value=0.28 Score=31.07 Aligned_cols=64 Identities=14% Similarity=0.316 Sum_probs=46.9
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCC-CCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
+|+.+.+......|+.+|-+.+ +++ +....+-.+|..+.. ....+.-+++||.|.++.-..||+
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence 4554443211568999987654 676 777777799988754 467888999999999888888886
No 265
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=90.35 E-value=1.4 Score=30.46 Aligned_cols=61 Identities=36% Similarity=0.576 Sum_probs=42.5
Q ss_pred ceEEEEeeccchHHHHHHHhccc----cCCC----CCceEEEE-cC---eec----------CCC----CccccccCCCC
Q 026973 163 KTITLEVESSDTIDNVKAKIQDK----EGIP----PDQQRLIF-AG---KQL----------EDG----RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~----~gi~----~~~q~l~~-~g---~~l----------~d~----~~L~~~~i~~~ 216 (230)
..+++.+-..+||.++|++|-.. .|.| ++.+.|-| .| ..| ++. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888999999999998764 2554 34556655 12 122 111 47889999999
Q ss_pred CEEEEEE
Q 026973 217 STLHLVL 223 (230)
Q Consensus 217 ~~i~l~~ 223 (230)
+++-++.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997764
No 266
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.12 E-value=1.1 Score=36.15 Aligned_cols=74 Identities=11% Similarity=0.127 Sum_probs=56.4
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCc-eEEEE--cCe--ecCCCCccccccCCCCCEEEEEEec
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~l~~--~g~--~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
..+.+.|...+| +..+.+++.+|+.++-+.|+.+.|+.... +-|.+ +|. -|+.++++.+.+++.+....+.+|.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 346777888888 78899999999999999999999987643 44544 443 3788889999887777766666653
No 267
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.75 E-value=1.5 Score=28.47 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=38.0
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC-cEEEEcCcc
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~-q~L~~~g~~ 125 (230)
++|.+. .+|..+.+.++++.+..+|.+++.+.++++... ..+.|...+
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 455553 567788999999999999999999999987544 677787654
No 268
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=89.74 E-value=0.75 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.327 Sum_probs=42.1
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+.+. + +..|+.+|.+.+ ++++....+..+|..... ....+.-+++||.|.++.-..||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEeecccC
Confidence 455554 4 568999998877 455666766688887643 34566789999999877666665
No 269
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=89.63 E-value=0.57 Score=29.20 Aligned_cols=61 Identities=5% Similarity=0.111 Sum_probs=43.9
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+| +|+.+.+ ++.||.+|-+ ..++++..-....||..+.. ....++-+.+++++.++..
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEcc
Confidence 55554 6776654 6799999987 66888888877789876643 3455667888888887643
No 270
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=89.42 E-value=0.65 Score=28.13 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=43.0
Q ss_pred ccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+|+. +++....|+.+|.+.+ ++++....+..+|..... ....+.-+++||.|.++.-..||
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEESCCCC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEeecccC
Confidence 3443 3456678999998877 456777777788887643 23556778999999877666665
No 271
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.03 E-value=0.42 Score=33.51 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.9
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE
Q 026973 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~ 121 (230)
..+.|..++|+.+|+..|++.+|+|++.++|..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457888999999999999999999999999874
No 272
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.90 E-value=2.3 Score=29.35 Aligned_cols=60 Identities=35% Similarity=0.519 Sum_probs=41.9
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh----CCCCC----CeeEEe-cC---cccc----------CC----ccccccccccc
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKE----GIPPD----QQRLIF-AG---KQLE----------DG----RTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~----gip~~----~q~l~~-~g---~~L~----------d~----~~l~~~~i~~~ 64 (230)
..+++.|-.-+||.++|+||-+.. |.|.+ ...|-| .| ..|. +. .||+.|++.++
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 468899999999999999987763 77654 233443 12 1222 21 57888999999
Q ss_pred cceeee
Q 026973 65 STLHLV 70 (230)
Q Consensus 65 ~~i~l~ 70 (230)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998765
No 273
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=88.68 E-value=2 Score=27.82 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhCC------C-------CCCeeEEecCccccCCcccccccc
Q 026973 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------p-------~~~q~l~~~g~~L~d~~~l~~~~i 61 (230)
|+|+|+... |....++. +..||.+|.+.+...+.- . ...-.+..||+...+.. -.++.+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~-~~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG-GLATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT-GGGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC-CCCcCC
Confidence 778888553 43335664 578999999999877520 0 01234557776655322 134668
Q ss_pred ccccceeeeeee
Q 026973 62 QKESTLHLVLRL 73 (230)
Q Consensus 62 ~~~~~i~l~~~~ 73 (230)
.+++++.+....
T Consensus 79 ~~gDeV~i~Ppv 90 (93)
T 3dwg_C 79 ADGDSVTILPAV 90 (93)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEECCC
Confidence 889988877543
No 274
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=88.60 E-value=0.93 Score=28.60 Aligned_cols=63 Identities=14% Similarity=0.284 Sum_probs=45.0
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCC-CCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+.+......||.+|-+. .+++ +...-+..||..+.. ....+.-+++|+.|.++....||
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCC
Confidence 466554432166899998875 4677 777777799977754 35677889999999887665554
No 275
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.35 E-value=1.4 Score=28.21 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.0
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhC-C-----C-----CCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i-----p-----~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
....++++...||++|.+.+..... + . .....+..||+.... +.-+++|+.|.+.....||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567888888899999999988753 1 1 012566678877654 5568899999887655443
No 276
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.27 E-value=1.7 Score=38.39 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=55.5
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCC-ceEEEEc---C--eecCCCCccccccCCCCCEEEEEEec
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~-~q~l~~~---g--~~l~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
.+.+.|...+| ++.+.+++.+|+.+|-..|+...|+... .+-|.+. | .-|+.++++.+.+++.+....+.+|.
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 35677888887 6779999999999999999999998654 3455542 2 35677888988887777776666653
No 277
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=87.82 E-value=0.55 Score=28.45 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=41.0
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+. ++++...||.+|.+.+ ++++....+..||..... ....+.-+++|+.|.+.....|
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEESCCC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEeeccc
Confidence 4554 4556778999998876 566766766688876642 2234566889999988754443
No 278
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=87.64 E-value=2.2 Score=27.27 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.0
Q ss_pred ceEEEEeeccchHHHHHHHhccccC-C-----C-----CCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~g-i-----~-----~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
+...++++...||.+|.+.+..++. + . .....+.-||+.... +.-+++||.|.+.--..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567777778899999999987752 1 0 012566678877654 5568999999877666665
No 279
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.38 E-value=3.2 Score=32.91 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=49.0
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEec---Cc--cccCCcccccccccccccee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLH 68 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~---g~--~L~d~~~l~~~~i~~~~~i~ 68 (230)
|.+.|..++| ++.+.+++.+|+.|+=+.|.+..|+.... --|++. |. -|+.++.+.+.++..+....
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~ 74 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLL 74 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEE
Confidence 4678888888 78899999999999999999999987654 334442 32 26667777777654444433
No 280
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=86.63 E-value=1.6 Score=27.30 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.4
Q ss_pred eEEEEeeccchHHHHHHHhccccC-----CCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~g-----i~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...++ .+..||.+|.+.+..... ++.....+..||+.... +.-+++||.|.++--..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34444 456799999999886642 23344566688876642 5578999999887666665
No 281
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=86.24 E-value=1.2 Score=27.99 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=39.8
Q ss_pred eEeeecCCCChHHHHHHHHHhHhC-----CCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEecc
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~-----ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~ 152 (230)
...++ ....||.+|.+.+..... ++.....+..||+.... +..+++|+.|.+.....||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45566 567799999999876532 23344566688876642 5578899999887554443
No 282
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=86.10 E-value=2.5 Score=34.98 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCc
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~ 48 (230)
.-....+.+++..|+.++++.++..++++++.|.|++.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~ 359 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 359 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCC
Confidence 3456788999999999999999999999999999999873
No 283
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=85.47 E-value=1.1 Score=27.81 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=40.0
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCc--EEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++...||.+|.+.+..... ..... .+..||+.... +..+++|+.|.+.....|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv~G 76 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPVSG 76 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECCCCC
Confidence 456777778899999999877642 01223 56688877754 357889999887654433
No 284
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=85.30 E-value=5.2 Score=32.05 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=48.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEe--cCc--cccCCccccccccccccce
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGK--QLEDGRTLADYNIQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~--~g~--~L~d~~~l~~~~i~~~~~i 67 (230)
.+.|..++| ++.+.+++.+|+.||=+.|.+..|+...+ --|++ +|. -|+.++.+.+.+...+...
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 577888898 88899999999999999999999988633 34544 232 2677788888765544443
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=85.26 E-value=1 Score=40.50 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEec-CccccCCcccccc
Q 026973 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 59 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~L~d~~~l~~~ 59 (230)
.++...+.+.+++|+.+++..|++.+|||++.|.+++. |..+++....+.|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 45667889999999999999999999999999999985 5566666666655
No 286
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=84.39 E-value=3.4 Score=36.44 Aligned_cols=63 Identities=32% Similarity=0.524 Sum_probs=45.5
Q ss_pred ceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEEc----Ce-ecCCC-------------CccccccCCCC
Q 026973 163 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~~----g~-~l~d~-------------~~L~~~~i~~~ 216 (230)
..+++.|-..+||.++|++|-... |.| ++.+.|-|. |+ .|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 568888889999999999998643 444 345666652 23 34332 58999999999
Q ss_pred CEEEEEEec
Q 026973 217 STLHLVLRL 225 (230)
Q Consensus 217 ~~i~l~~~~ 225 (230)
+++.++.|.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887764
No 287
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.06 E-value=3.7 Score=36.13 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=45.9
Q ss_pred cceEEEEeeccchHHHHHHHhcccc--CCC------CCceEEEE----cCe-ecCCC-------------CccccccCCC
Q 026973 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gi~------~~~q~l~~----~g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-... |.| ++.+.|-| .|+ .|.|. .||+.|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4568888889999999999998753 333 45566765 223 23321 4899999999
Q ss_pred CCEEEEEEec
Q 026973 216 ESTLHLVLRL 225 (230)
Q Consensus 216 ~~~i~l~~~~ 225 (230)
|+++.++.|.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999988775
No 288
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.03 E-value=5.4 Score=25.45 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=35.0
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcC
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g 123 (230)
..|.|.+. .++..+.+.|+.+.+..+|+.+|..+..+ +...+. |++
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF 57 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecC
Confidence 34666664 45678999999999999999999999988 344444 443
No 289
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=83.17 E-value=1.5 Score=27.18 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=40.2
Q ss_pred eEEEEeeccchHHHHHHHhccccCCCCCce--EEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q--~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
...+++.+..||.+|.+.+..... ..... .+..+|+.... +.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECCCCCC
Confidence 445666677899999998877641 01223 56688887654 3578999999876555555
No 290
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=83.16 E-value=0.49 Score=29.73 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=38.1
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
.++++...||.+|.+.+ +++.....+..||+....+ .-+++|+.|.+.....|
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~G 76 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSG 76 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEccccc
Confidence 45667778999998765 4677777777888877654 56888998877644433
No 291
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=83.07 E-value=7.1 Score=25.04 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=40.4
Q ss_pred EEEeeccchHHHHHHHhccccC-----C-C-------CCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEG-----I-P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~g-----i-~-------~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.++. +..||.+|.+.+..++. + . .....+.-||+......- .+.-+++||.|.++--..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 4554 45799999999988752 0 1 113556678876543222 34668999999888777776
No 292
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=82.29 E-value=6 Score=26.81 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=47.0
Q ss_pred eEEEEEEecceeeEEEeecc-ceEEEEeec---cchHHHHHHHhcccc-CCC---------CCc-eEEEEcCeecCCCCc
Q 026973 143 LHLVLRLRGGMQIFVKTLTG-KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PDQ-QRLIFAGKQLEDGRT 207 (230)
Q Consensus 143 i~l~~~~~~~~~i~v~~~~g-~~~~~~v~~---~~tV~~lK~~i~~~~-gi~---------~~~-q~l~~~g~~l~d~~~ 207 (230)
+.+.++..+++... .++ +.+.++++. ..||.+|-+.+++++ +.. ... ..++.|++ |-.-
T Consensus 12 M~v~V~~~~~Lr~~---~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~---di~~ 85 (114)
T 1wgk_A 12 LCVKVEFGGGAELL---FDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA---DWEL 85 (114)
T ss_dssp EEEEEEECTTTGGG---TTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS---BHHH
T ss_pred cEEEEEEchHHHHH---hCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe---eeec
Confidence 44555555554321 222 356677773 369999999999886 111 111 22223442 1112
Q ss_pred c--ccccCCCCCEEEEEEeccCCC
Q 026973 208 L--ADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 208 L--~~~~i~~~~~i~l~~~~~~g~ 229 (230)
| .++-+++||.|.++--..||+
T Consensus 86 l~gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 86 LGELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp HCTTTCBCCSSEEEEEEECSCCCC
T ss_pred cCCcCcCCCCCCEEEEeCCCCCCC
Confidence 2 357799999999888777774
No 293
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.99 E-value=4.4 Score=24.55 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=38.1
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.++|...+|+. .++..+.|+.++-+.+....+ ........||+..+-+ +.+.+++.+.+.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 788998878886 567789999999887754322 1112223677655443 344455555544
No 294
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=81.45 E-value=5.7 Score=26.44 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=51.2
Q ss_pred EEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE---EcCe--ecCCCCccccccCCCCCEEEEEEe
Q 026973 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~---~~g~--~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
|...+....++.+..+.|+++++..+..+.+...+.+.|+ ++|. +++++..--.-.+.-+..+++..|
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3334555667788888999999999999999877788887 5674 456666555666777888888776
No 295
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=80.97 E-value=0.57 Score=29.42 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=38.3
Q ss_pred EEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
.+++++..||.+|.+.+. +++....+..+|+....+ .-+++||.|.++--..||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 445566789999988764 566666677899877543 678899998765545554
No 296
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=80.49 E-value=1.7 Score=26.07 Aligned_cols=60 Identities=13% Similarity=0.300 Sum_probs=40.0
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
.+|+.+. + ...||.+|.+.+ ++++....+..||.....+ ...+.-+++|+.|.+.....|
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeeccc
Confidence 3566554 4 568999998876 4566666666788766422 233456889999988765444
No 297
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=80.42 E-value=4.8 Score=25.56 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=40.3
Q ss_pred EEeeccchHHHHHHHhccccC------C-----CCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 167 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~g------i-----~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
++++...||.+|.+.+..... + ......+..+|+..... .-.+.-+++||.|.++--..||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 455556899999999887641 1 11345566788765422 2345568999999887666665
No 298
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=80.40 E-value=9.4 Score=25.81 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=43.8
Q ss_pred CeeeEEEecc------C--eeEeeecCC---CChHHHHHHHHHhHhC-C---------CCCC-cEEEEcCcccCCCccH-
Q 026973 76 GMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEG-I---------PPDQ-QRLIFAGKQLEDGRTL- 132 (230)
Q Consensus 76 ~~~v~v~~~~------g--~~~~i~v~~---~~tV~~lK~~i~~~~~-i---------p~~~-q~L~~~g~~L~d~~tL- 132 (230)
.|.|+|+... | +.+.++++. ..||.+|...+.+.+. . ...+ ..+..|+... ..+
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di---~~l~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADW---ELLG 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBH---HHHC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeee---eccC
Confidence 3666666542 2 356678773 3699999999988761 1 0111 2222344211 111
Q ss_pred -hhcccccCCceEEEEEEecc
Q 026973 133 -ADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 133 -~~~~i~~~~~i~l~~~~~~~ 152 (230)
.++.+++|+.|.+.....+|
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 35778999999887776666
No 299
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.44 E-value=4.3 Score=26.88 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=44.5
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc-EEE-EcC-----cccCCCccHhhc
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FAG-----KQLEDGRTLADY 135 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q-~L~-~~g-----~~L~d~~tL~~~ 135 (230)
.+..|.|...+|....+.|++++|++++-+.+..+.+...+.- .|+ +.. +.++|+..+-+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 4566778889999999999999999999999999988654333 333 222 456776665444
No 300
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=78.79 E-value=7.8 Score=25.79 Aligned_cols=71 Identities=10% Similarity=0.208 Sum_probs=46.8
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE---EcCcc--cCCCccHhhcccccCCceEEE
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.+...|...+.....+.+..+.|+.+++..++++.+...+.+.|. ++|.. ++++..--.-.+.-++.+++.
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEE
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 344455556777788999999999999999999999876677776 56743 444332222223344455444
No 301
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.38 E-value=11 Score=33.26 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=49.4
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEec---C--ccccCCccccccccccccceee
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~---g--~~L~d~~~l~~~~i~~~~~i~l 69 (230)
|.+.|..++| ++.+.+++.+|+.+|=..|....|++... --|+|. | .-|+.++.+.+.++..+..+.+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 3577888888 78899999999999999999999997543 455553 2 2356677777766554444333
No 302
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=78.37 E-value=3.6 Score=32.87 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=46.7
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEecC-----ccccCCccccccc
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG-----KQLEDGRTLADYN 60 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~g-----~~L~d~~~l~~~~ 60 (230)
|.+.|..++|....+++++.+|+.||=..|.+..|+.... --|.+.. .-|+.++.+.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 5688999999999999999999999999999999988644 4455432 2256666666553
No 303
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=78.36 E-value=4.6 Score=32.23 Aligned_cols=73 Identities=8% Similarity=-0.001 Sum_probs=51.8
Q ss_pred cceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCc-eEEEEc---C--eecCCCCccccccCCCCCEEEEEE
Q 026973 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~l~~~---g--~~l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
..+.+.|..++|....+.+++.+|+.++-+.|+++.|+.... +-|.+. | .-|+.++++.+........+++..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 346778888999999999999999999999999999986544 455432 2 346777888776544444454433
No 304
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.59 E-value=5.3 Score=26.43 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=43.8
Q ss_pred ceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCC-CceEEE--Ec----CeecCCCCccccc
Q 026973 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI--FA----GKQLEDGRTLADY 211 (230)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~l~--~~----g~~l~d~~~L~~~ 211 (230)
...+.+...+|....+.|++++|+.++-+.+..+.+... ....|+ +. -+.++|.-.+-+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 345677788999999999999999999999999988653 455655 22 1456666555443
No 305
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=76.49 E-value=3.5 Score=27.17 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=26.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
+..+.+-|+++.+..+|..+|..+++++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 5689999999999999999999999876
No 306
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.35 E-value=12 Score=32.98 Aligned_cols=63 Identities=30% Similarity=0.492 Sum_probs=45.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh--CCCC------CCeeEEec-C---c-cccC-------------Cccccccccccc
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA-G---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gip~------~~q~l~~~-g---~-~L~d-------------~~~l~~~~i~~~ 64 (230)
..+++.|-.-|||.++|+||-+.. |.|- +...|-|. | + .|.| =.||++|++.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 568889999999999999998873 4544 33445552 2 1 2333 268999999999
Q ss_pred cceeeeeee
Q 026973 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.|..+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999987654
No 307
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=75.36 E-value=14 Score=23.99 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=25.7
Q ss_pred CEEEEEccC-------C-cEEEEEec--CCCcHHHHHHHhhhhh
Q 026973 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKE 34 (230)
Q Consensus 1 m~v~v~~~~-------g-~~~~~~v~--~~~tv~~lK~~i~~~~ 34 (230)
|+|+|+... | +...+++. ++.||.+|.+.+.+..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 567777442 2 46677777 7899999999998876
No 308
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=75.09 E-value=9.5 Score=24.42 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=41.7
Q ss_pred eEEEeeccc-eEEEEeec-cchHHHHHHHhccccCCCCCceEEE-EcC---eecCCCCccccccCCCCCEEEEEEeccCC
Q 026973 155 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~g~-~~~~~v~~-~~tV~~lK~~i~~~~gi~~~~q~l~-~~g---~~l~d~~~L~~~~i~~~~~i~l~~~~~~g 228 (230)
|+.+..+.+ ...+.++. ..+|.+||++|..+.++-..++.|. ++. ++..|+. .-|..++.|.+-....+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~----~lIprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN----ALIPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT----CEEETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc----eEEecCCEEEEEeccCcc
Confidence 444544443 34577774 4699999999999887755666665 443 3333433 235666777433334443
No 309
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=73.84 E-value=12 Score=23.45 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=50.6
Q ss_pred EEEEeeccchHHHHHHHhccccCCCCCceEEEE-cCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
..+.|.+....-.+-+-.++.+.+|+....++. .|.=....++-...-++.|+.++++-|-+=|.
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 346677777777776777888889998877774 55566888888888899999999999876554
No 310
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=73.81 E-value=16 Score=23.93 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=52.6
Q ss_pred eeeEEEeccC---eeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEEcC---cccCCCccHhhcccccCCceEEEE
Q 026973 77 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g---~~~~i~v~~~~tV~~lK~~i~~~~~ip~--~~q~L~~~g---~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
+.|+|...+. ....+.|..+.-|+.+..++-+..+++. +.--|-+.. ..+....+|..|||+.++.+++..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 4566666443 5578888888999999999988877654 345555543 356888999999999999887653
No 311
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=73.63 E-value=13 Score=24.14 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=36.5
Q ss_pred eeEeeecC--CCChHHHHHHHHHhHhCCCCC-------------CcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 87 KTITLEVE--SSDTIDNVKAKIQDKEGIPPD-------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~i~v~--~~~tV~~lK~~i~~~~~ip~~-------------~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
+...++++ ...||++|.+.+.++..-... ...+..|+...+-. .=.++-+++|+.|.+.....|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCCCcCcCCCCEEEEECCCCC
Confidence 34566666 678999999999887631110 01122444321100 013567899999887755444
No 312
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=73.08 E-value=1.8 Score=29.27 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=41.5
Q ss_pred CEEEEEccC------CcEEEEEecC----CCcHHHHHHHhhhhhCCCCCCeeEEec-C--c------cccCCccc-----
Q 026973 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIFA-G--K------QLEDGRTL----- 56 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~----~~tv~~lK~~i~~~~gip~~~q~l~~~-g--~------~L~d~~~l----- 56 (230)
|+|.|+..+ |+...++++. .+||.+|=+.+.+.. |..+..|+.. | . .|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 567777654 3556677773 359999999888876 2334444422 3 1 12233332
Q ss_pred cccccccccceeeeeee
Q 026973 57 ADYNIQKESTLHLVLRL 73 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~~ 73 (230)
.+|.+.++++|.+....
T Consensus 83 ldt~L~dgD~V~fistl 99 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTL 99 (110)
T ss_dssp SCCCCCSSCEEEEEECC
T ss_pred cccCCCCcCEEEEeCCC
Confidence 24667888886664433
No 313
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=73.07 E-value=15 Score=23.24 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=46.6
Q ss_pred EEEEeeccchHHHHHHHhcccc-CC--C--CCceEEEEcCee--cCCCCccccccCCCCCEEEEEE
Q 026973 165 ITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~-gi--~--~~~q~l~~~g~~--l~d~~~L~~~~i~~~~~i~l~~ 223 (230)
.-+.++..+|+.++=+++.... |. + |...+..++|.. +..+.+.++.|+++-+.|.+.+
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4577888999999988777653 42 2 234566688887 8999999999999999998876
No 314
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=72.92 E-value=2 Score=29.06 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=42.0
Q ss_pred eeeEEEecc------CeeEeeecCC----CChHHHHHHHHHhHhCCCCCCcEEEE-cC--c------ccCCCccH-----
Q 026973 77 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF-AG--K------QLEDGRTL----- 132 (230)
Q Consensus 77 ~~v~v~~~~------g~~~~i~v~~----~~tV~~lK~~i~~~~~ip~~~q~L~~-~g--~------~L~d~~tL----- 132 (230)
|+|.|+... |+...++++. ..||.+|-..+.+... ..+-.|+- +| . .|-+++..
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 555555443 3445677773 3599999988888752 21222221 12 1 12222222
Q ss_pred hhcccccCCceEEEEEEecce
Q 026973 133 ADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 133 ~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+|.+++|++|.+.....+|+
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246789999988877666665
No 315
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=72.85 E-value=13 Score=25.16 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=47.2
Q ss_pred eEEEEeeccchHHHHHHHhcccc-C-------CCCCceEEEEcCeec--CCCCccccccCCCCCEEEEEE
Q 026973 164 TITLEVESSDTIDNVKAKIQDKE-G-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~-g-------i~~~~q~l~~~g~~l--~d~~~L~~~~i~~~~~i~l~~ 223 (230)
.+.+-++++++..+|-+.+-.-. + |.-+...|..+|+.. +.+++|.+.|+..-|.|++..
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~T 108 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTT 108 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEEC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeC
Confidence 46788999999999987776542 3 445566788899876 678999999999999997653
No 316
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=72.68 E-value=6.8 Score=25.80 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=42.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCC-----------CeeEEecC-ccccC------Cccccccccccccceeee
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~-----------~q~l~~~g-~~L~d------~~~l~~~~i~~~~~i~l~ 70 (230)
....+++++++|+.++-+.+...-.+... ...|++.+ ..|+. +++|.+.|+.++..|++.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35678999999999999999885433322 34555554 22322 577999999999988875
No 317
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.97 E-value=18 Score=23.56 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=41.0
Q ss_pred CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCCC---------Ce-------eEEecCccccCCccc
Q 026973 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTL 56 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~---------~q-------~l~~~g~~L~d~~~l 56 (230)
|+|+|+... | +.+.+ + ..||.+|.+.+...+. +... .- .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l--~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPL--S-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEE--E-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeEEE--e-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 678888664 3 24444 4 6899999999887741 1110 12 456777655322 12
Q ss_pred cccccccccceeeeee
Q 026973 57 ADYNIQKESTLHLVLR 72 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~ 72 (230)
.++.+.+++++.+...
T Consensus 80 ~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 80 LETLLKDSDEIGILPP 95 (99)
T ss_dssp TTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCEEEEECC
Confidence 3456788888777543
No 318
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=71.59 E-value=6.2 Score=25.02 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=37.7
Q ss_pred eecCCCChHHHHHHHHHhHhC------C-----CCCCcEEEEcCcccCCCccHhhcccccCCceEEEEEEec
Q 026973 91 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~------i-----p~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 151 (230)
++++...||.+|.+.+..... + ......+..||+..... .-.+..+++|+.|.+.....|
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~G 89 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAG 89 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCC
Confidence 345556899999999987742 1 01345666888766421 123446889999887654433
No 319
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=70.80 E-value=4.6 Score=36.35 Aligned_cols=52 Identities=31% Similarity=0.576 Sum_probs=42.3
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc-CcccCCCccHhhcc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYN 136 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~-g~~L~d~~tL~~~~ 136 (230)
..+...+.+.++.|+.+++..|++.+|+|++.|.+++. |..+.+......|-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 45556788899999999999999999999999999965 45666666666653
No 320
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=70.60 E-value=15 Score=30.07 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=41.2
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc--ccCCCccHhhcc
Q 026973 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYN 136 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~--~L~d~~tL~~~~ 136 (230)
......+.+.+..|+.++++.+++.++++++.|.|.+.+. .++...+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 4456778889999999999999999999999999998873 334455555554
No 321
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=70.45 E-value=15 Score=32.45 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=44.9
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh--hCCCCC------CeeEEec-C---c-cccC-------------Cccccccccccc
Q 026973 11 KTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA-G---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~--~gip~~------~q~l~~~-g---~-~L~d-------------~~~l~~~~i~~~ 64 (230)
..+.+.|-.-|||.++|+||-+. -|.|.+ ...|-|. | + .|.| =.||++|++.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 35888999999999999999865 355553 3345552 2 2 2444 268999999999
Q ss_pred cceeeeeee
Q 026973 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.|..+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 322
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=69.84 E-value=13 Score=25.60 Aligned_cols=51 Identities=27% Similarity=0.415 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHhHhCCCC-------CCcEEEEcCcccCC--CccHhhcccccCCceEEEE
Q 026973 96 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~ip~-------~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~ 147 (230)
..|..+|-..+...+|++. ..++|+|..- .+| .++|++.|+.+|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEc
Confidence 4588888888888888652 2455655442 223 6799999999999887764
No 323
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=69.04 E-value=19 Score=22.75 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=46.9
Q ss_pred EEEEeeccchHHHHHHHhcccc-C--C--CCC-ceEEEEcC--eecCCCCccccccCCCCCEEEEEEe
Q 026973 165 ITLEVESSDTIDNVKAKIQDKE-G--I--PPD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~-g--i--~~~-~q~l~~~g--~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
.-+.++..+|+.++=+++.-.. | + +|. ..+..++| +.+..+.|+.+.||.+-+.|.+.+.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4577888999999988877653 4 2 222 45666888 8899999999999999999988764
No 324
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=68.13 E-value=15 Score=22.04 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=39.3
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
|.+.+..++|+. .+++...|+.++-+.+....+ ....-...+|+..+-+ +-+++|+.|.++..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 345666667765 566678899999887754432 2223334688765543 55667888877654
No 325
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=67.10 E-value=24 Score=23.15 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=55.3
Q ss_pred EEEEEccCC---cEEEEEecCCCcHHHHHHHhhhhhCCCCC--CeeEEecC---ccccCCccccccccccccceeeee
Q 026973 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g---~~~~~~v~~~~tv~~lK~~i~~~~gip~~--~q~l~~~g---~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|+|..++. ...++.|..+.-|+-+-.++-+...++.+ +-.|.+.. -.+....+|-.|||..++.++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 688888664 57899999999999999999988877764 34455543 346788999999999999988764
No 326
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=67.00 E-value=11 Score=23.46 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=37.8
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
.+.++.++++...+++.+..|+.+--.+..++-++.|+.+..+
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3678889999999999999999999888888889999877776
No 327
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.85 E-value=12 Score=23.86 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=38.4
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
.+.++.++++...+++.+..|+.+--.+..++-++.++.+..+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 4778889999999999999999999888888889999987776
No 328
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=66.65 E-value=6.5 Score=25.88 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=40.7
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCc-----------EEEEcC-cccC------CCccHhhcccccCCceEEE
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ-----------RLIFAG-KQLE------DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q-----------~L~~~g-~~L~------d~~tL~~~~i~~~~~i~l~ 146 (230)
...++++++.|..+|-..+.+.-.+....- .|+... ..|+ -+++|.+.|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 457899999999999999998654433333 333322 1222 1557899999999988775
No 329
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=65.98 E-value=10 Score=24.91 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.5
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCC-----CcEEEEcC
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAG 123 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~-----~q~L~~~g 123 (230)
+..+.+-|+++.+..+|..+|.++.+++.. ..+|.|..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 457889999999999999999999986522 23565654
No 330
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=65.64 E-value=11 Score=24.60 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=33.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee-EEecCcc
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g~~ 49 (230)
.+.+.+.|++.+|=.|+|+.|+..+++.+..-. +...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 368999999999999999999999999998754 4466643
No 331
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=65.57 E-value=23 Score=22.40 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=45.8
Q ss_pred EeeecCCCChHHHHHHHHHhHh-C--CCC--CCcEEEEcCcc--cCCCccHhhcccccCCceEEE
Q 026973 89 ITLEVESSDTIDNVKAKIQDKE-G--IPP--DQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~-~--ip~--~~q~L~~~g~~--L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.-+.|+..+|+.++=++++... | +++ ...+..++|.. +.++.++++.||.+-+.|.+.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 3567889999999998887754 3 322 25667789987 999999999999998888765
No 332
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=65.54 E-value=13 Score=24.71 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=49.4
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEEcC---cccCCCccHhhcccccCCceEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~--~~q~L~~~g---~~L~d~~tL~~~~i~~~~~i~l~ 146 (230)
.|+|...+ ...++.|..+.-|+.+..++-+..+++. +.--|-+.. ..+....||..|||+.++.+++.
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 34444333 5678888888899999999998877653 344555433 35688899999999999988665
No 333
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=64.75 E-value=24 Score=22.30 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=46.1
Q ss_pred EeeecCCCChHHHHHHHHHhHh-C--CC---CCCcEEEEcC--cccCCCccHhhcccccCCceEEEE
Q 026973 89 ITLEVESSDTIDNVKAKIQDKE-G--IP---PDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~-~--ip---~~~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~ 147 (230)
.-+.|+..+|+.++=++++... | ++ -...+..++| +.+..+.|+++.||.+-..|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3567899999999999987754 3 32 2245666888 889999999999999988887764
No 334
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=64.07 E-value=9.7 Score=24.32 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+++.|++.+|=.|+|+.|+..+++.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999999999999987644
No 335
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=62.34 E-value=28 Score=24.12 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=41.3
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCccc-CCCccHhhccc---ccCCceEEEEE
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKESTLHLVLR 148 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~L-~d~~tL~~~~i---~~~~~i~l~~~ 148 (230)
.+-|+.+.||+++..-|..+..++++.--++ |.+..+ ..+.++++.-= .++..+++...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 4568889999999999999999999877666 766555 44566665432 23445655543
No 336
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=60.95 E-value=24 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=33.1
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhc
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 135 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~ 135 (230)
.+-|+.+.||+++..-|..+.+++++.--.+| ++.....+.++++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 34677788999999999999999887654445 44433456667665
No 337
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=60.21 E-value=25 Score=24.00 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=36.7
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC------CcEEE---EcCc
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK 124 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~------~q~L~---~~g~ 124 (230)
.+...|...+.....+.+..+.|+.+++..++++.+..-+ .+.|. ++|.
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGE 66 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGE 66 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCC
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCc
Confidence 4444555566677788899999999999999999987543 66665 5674
No 338
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=59.29 E-value=12 Score=27.22 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=42.4
Q ss_pred EEEeeccchHHHHHHHhccccC-CC---------CCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 166 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~g-i~---------~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
.++++. .||.+|.+.+...+. +. .....+..||...... .-.+.-+++||.|.++--..||+|
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~-~~~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYL-QGLSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGT-TGGGCBCCTTCEEEEECSCCSEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCc-CCCccCCCCCCEEEEECccccccc
Confidence 445555 899999999877641 10 2345566788766542 234567999999988877788764
No 339
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=59.06 E-value=6.9 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCCC
Q 026973 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGQ 229 (230)
Q Consensus 179 K~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g~ 229 (230)
|+.+-+++++.+++...+. .++--.++||.+.|+.|.+..+ ..+|.
T Consensus 20 k~~lL~~y~i~~~qLPrI~-----~~DPvar~~G~k~GdVvkI~R~S~taG~ 66 (78)
T 1hmj_A 20 VEEILKRYNIKIQQLPKIY-----EDDPVIQEIGAKEGDVVRVIRKSPTAGV 66 (78)
T ss_pred HHHHHHHcCCCHHHCCeee-----CcCHhhHHhCCCCCCEEEEEECCCCCCC
Confidence 4455566677666655533 3344567789999999998776 34454
No 340
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=58.97 E-value=12 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=33.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee-EEecCc
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g~ 48 (230)
.+.+.+.|++.+|=.|+|+.|+..+++.+..-. +...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 378999999999999999999999999997754 335554
No 341
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.96 E-value=15 Score=23.47 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 478999999999999999999999999987644
No 342
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=57.94 E-value=20 Score=24.48 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=47.3
Q ss_pred EEeeccceEEEEeeccchHHHHHHHhccccCCCCC------ceEEE---EcCe--ecCCCCccccccCCCCCEEEEEEe
Q 026973 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 157 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~------~q~l~---~~g~--~l~d~~~L~~~~i~~~~~i~l~~~ 224 (230)
|...+....++.+....|+.+++..+..+.+...+ .+.|+ ++|. +++++..--.-.+.-+..+++..|
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33344556678888889999999999999876443 78876 5664 456555554555666777877665
No 343
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=57.43 E-value=12 Score=23.44 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (230)
..+.+.|+++.+..+|..+|..+++++
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 467899999999999999999999875
No 344
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=57.04 E-value=23 Score=30.84 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.2
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC--CCeeEEe
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~--~~q~l~~ 45 (230)
|.+.|..++|....+.+++.+|+.||-+.|....|+.. +.--|++
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35778889999999999999999999999999999985 3445554
No 345
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=56.52 E-value=17 Score=23.62 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=38.9
Q ss_pred eeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
..+.+..++++...+++.+..|+.+--.+..++-++.++.+..+
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 35788889999999999999999999888888889999887776
No 346
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=56.34 E-value=30 Score=27.36 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=43.0
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcE-EE--EcC----cccCCCccHhhc
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LI--FAG----KQLEDGRTLADY 135 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~-L~--~~g----~~L~d~~tL~~~ 135 (230)
.+.+.|...+|....+.|++++|++++-+.+..+.+.+...-. |+ +.. +.|+|...+.+.
T Consensus 31 k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dv 97 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVEN 97 (281)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHH
Confidence 3456677788889999999999999999988888876544433 32 211 557777776654
No 347
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=56.33 E-value=15 Score=24.03 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=30.8
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecC
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g 47 (230)
.+++.|++.+|=.|+|+.|+..+++.+..-.-. ..|
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 389999999999999999999999999875533 455
No 348
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=55.30 E-value=29 Score=23.91 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=34.6
Q ss_pred cchHHHHHHHhccccCCCC-------CceEEEEcCee-cCCCCccccccCCCCCEEEEE
Q 026973 172 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 172 ~~tV~~lK~~i~~~~gi~~-------~~q~l~~~g~~-l~d~~~L~~~~i~~~~~i~l~ 222 (230)
..|..+|-+.+..++|... ..++|+|.--- -.-.++|.+.|+++|+.+.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4688888777877787653 13445543321 123589999999999998764
No 349
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=54.51 E-value=21 Score=24.34 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCccccc
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~~ 58 (230)
+-|+.+.||+++...|..+.++++++-.++| |+.....+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 4689999999999999999999997755444 6654444555543
No 350
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=54.48 E-value=39 Score=21.52 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=30.0
Q ss_pred eeEEEeccCe-eEeeecCC-CChHHHHHHHHHhHhCCCCCCcEEE-EcC
Q 026973 78 QIFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 78 ~v~v~~~~g~-~~~i~v~~-~~tV~~lK~~i~~~~~ip~~~q~L~-~~g 123 (230)
.|+.+..+.+ .-.+.++. ..+|.+||..|..+.++...+.-|. ++.
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na 56 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNA 56 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEES
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCC
Confidence 3444444433 34566665 4599999999999988766566555 543
No 351
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=54.42 E-value=21 Score=24.52 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=32.4
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCccccc
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~~ 58 (230)
.-|+.+.||+++...|.++..+++++-.++| ++.....+.++++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 4689999999999999999999997755555 5443334455543
No 352
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=53.80 E-value=49 Score=22.42 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=46.3
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh-h-------CCCCCCeeEEecCcccc--CCccccccccccccceeee
Q 026973 11 KTITLEVESSDTIDNVKAKIQDK-E-------GIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~-~-------gip~~~q~l~~~g~~L~--d~~~l~~~~i~~~~~i~l~ 70 (230)
..+.+-++|+++.++|-+.+-.- . .|.-+.-.++.+|+... .+++|++.|+...+.|...
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 35788999999999998876543 3 35555556778898875 4699999999998887665
No 353
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=53.22 E-value=44 Score=21.74 Aligned_cols=56 Identities=5% Similarity=0.062 Sum_probs=40.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh---hCCCCCCeeEEecCccccCCccccccccccccceeeee
Q 026973 11 KTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (230)
..+.+++.++.||.++=+...-. ..|......+-.+|+... .++-+.+|+++.+.-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 46788999999999998865432 234444567778888776 455577888887753
No 354
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=52.95 E-value=43 Score=29.07 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=39.8
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~--~~q~L~~ 121 (230)
..+.+.|...+|....+.++..+|+.++-..|+...|+.. +..-|..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4577888889999999999999999999999999999874 3445554
No 355
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=52.79 E-value=58 Score=25.31 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=44.2
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE--c-----CcccCCCccHhhcccccCCceEEEEE
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--A-----GKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~--~-----g~~L~d~~tL~~~~i~~~~~i~l~~~ 148 (230)
...|.|...+|....+.|+++.|+++|-..+..+...+...-..++ . -+.|+|...+-+.-..=++.-.+.++
T Consensus 8 ~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~ 87 (256)
T 3hk0_A 8 KQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFR 87 (256)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEe
Confidence 3456677788999999999999999999998887765433333222 1 15677777665443222233344444
Q ss_pred E
Q 026973 149 L 149 (230)
Q Consensus 149 ~ 149 (230)
.
T Consensus 88 k 88 (256)
T 3hk0_A 88 K 88 (256)
T ss_dssp E
T ss_pred c
Confidence 3
No 356
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=51.84 E-value=7.2 Score=24.40 Aligned_cols=45 Identities=4% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCC
Q 026973 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 228 (230)
Q Consensus 179 K~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g 228 (230)
|+.+-+++++.+++... .+.++--.++||.+.|+.|.+..+ ..+|
T Consensus 22 k~~lL~~y~i~~~qLP~-----I~~~DPvar~~G~k~GdVvkI~R~S~taG 67 (77)
T 1eik_A 22 AKRVLKELDAHPEQLPK-----IKTTDPVAKAIGAKRGDIVKIIRKSPTAE 67 (77)
T ss_dssp HHHHHHHTTCCTTTSCC-----CBTTSHHHHGGGCCTTCEEEEEEEETTTE
T ss_pred HHHHHHHcCCCHHHCCe-----eeCcCHhhHHhCCCCCCEEEEEECCCCCC
Confidence 34555566777666544 333444567789999999998776 3444
No 357
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=51.15 E-value=27 Score=22.74 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=38.4
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEc
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~ 198 (230)
.|.+..++++...++|.+..|+.+--.+..++-++.++.+..+..
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 467888999999999999999999888888888998987777643
No 358
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=50.42 E-value=28 Score=23.63 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCccccc
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~~ 58 (230)
+-|+.+.||+++...|.++.++++++-.++| ++.....+.++++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 4589999999999999999999987655444 5543333444443
No 359
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=50.42 E-value=36 Score=22.71 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=25.2
Q ss_pred EEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026973 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
.+=..+|-...++++.++|+.++|+.+-+.
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 333568999999999999999999987666
No 360
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=49.95 E-value=2.2 Score=28.19 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=51.6
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccc-cccccccccceeeeeeecCCeeeEEEeccCeeEe
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 90 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~ 90 (230)
.+.+..++-+....|++.|.+..+++++ .+.++.+| .++|+.+=..+.+.......+.+.+...
T Consensus 17 ~~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~------ 81 (101)
T 4dxe_H 17 NLYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDE------ 81 (101)
T ss_dssp -------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHH------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHH------
Confidence 4556777788999999999999999874 56777778 8888887777766655544333333211
Q ss_pred eecCCCChHHHHHHHHHhH
Q 026973 91 LEVESSDTIDNVKAKIQDK 109 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~ 109 (230)
++..-.||+++-..|.++
T Consensus 82 -~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 82 -EAEKINTVGDAVKFINSL 99 (101)
T ss_dssp -HHTTCCBHHHHHHHHC--
T ss_pred -HHHcCCCHHHHHHHHHHc
Confidence 134556899888777654
No 361
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=49.77 E-value=36 Score=22.03 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.0
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEE-EEcCcc
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 125 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L-~~~g~~ 125 (230)
...+.+.|++.+|=.++|+.++..+++.+...+- ...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 3578999999999999999999999999988754 466654
No 362
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=49.00 E-value=22 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|...++++.++.|+.+.=.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 578888899999999999999998655
No 363
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=48.47 E-value=60 Score=21.87 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=38.5
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhccc---ccCCceEEEE
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~l~~ 147 (230)
.+-|+.+.||+++..-|..+..++++.--.+| ++.....+.++++.-- ..+..+++..
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 109 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAY 109 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEE
Confidence 34577788999999999999999887654455 4443345666766532 2344565554
No 364
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=48.30 E-value=63 Score=22.28 Aligned_cols=44 Identities=9% Similarity=0.213 Sum_probs=32.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEE-ecCccc-cCCccccc
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~L-~d~~~l~~ 58 (230)
+-|+.+.||+++...|.++.++++++-.++ |.+..+ ..+.++++
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 468999999999999999999999776655 655434 33444443
No 365
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=48.11 E-value=56 Score=21.43 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=35.1
Q ss_pred EEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecC
Q 026973 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g 47 (230)
+|.||.. .|.++-+.++.--+..||..++...+|-+. -|.|..
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n 51 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTN 51 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEec
Confidence 3555544 689999999999999999999999999866 466654
No 366
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=47.92 E-value=62 Score=21.89 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=39.0
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhccc---ccCCceEEEE
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~i---~~~~~i~l~~ 147 (230)
.+-|+.+.||+++...|..+..++++.--++| ++.....+.++++.-= .++..+++..
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 45588899999999999999999887655555 5543345666665432 2344555543
No 367
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=47.75 E-value=29 Score=31.06 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=37.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCC-eeEEe
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF 45 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~ 45 (230)
|.+.|..++|....+++++.+|+.|+=..|..+.|+.... -.|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4577889999999999999999999999999999976533 44554
No 368
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=47.50 E-value=19 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +.+|+.+.++++++.|+.++-+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (166)
T 1n62_A 5 HIEL-TINGHPVEALVEPRTLLIHFIREQ 32 (166)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHHc
Confidence 4555 457999999999999999876653
No 369
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=46.69 E-value=23 Score=22.04 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.0
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCC-----CCCcEEEEcC
Q 026973 88 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 123 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~ip-----~~~q~L~~~g 123 (230)
.+.+.|+++.+..+|..+|.++.+.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 56788999999999999999999865 3455666655
No 370
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=46.02 E-value=53 Score=20.57 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=50.2
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhcccccCCceEEEEEEe
Q 026973 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 150 (230)
..+.|+..+....+-+-.++++.+|+...-++. .|.-+....+-...-++.|+.+.+..|-+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 356788888888888899999999998877774 56677888888888889999888876543
No 371
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=45.84 E-value=20 Score=22.18 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=52.5
Q ss_pred CCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChH
Q 026973 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
..+...+++.+.+..|+++... -..+.++..+.++|+.+=..+.+.......+.+.+... .+....||
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~~-----~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~-------~~~~~~Tv 71 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGTD-----LSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDD-------VAGRVDTP 71 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCCC-----TTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTT-------TTTTCCSH
T ss_pred HHHHHHHHHHHHHHhCCCcccc-----cccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHH-------HHHcCCCH
Confidence 4678899999999999987410 01345666788999887777777766655444444211 12345689
Q ss_pred HHHHHHHHhHh
Q 026973 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..+.+..
T Consensus 72 ~~l~~~i~~~~ 82 (86)
T 1af8_A 72 RELLDLINGAL 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888777653
No 372
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=44.98 E-value=20 Score=23.86 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=51.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC--CeeEEecC---ccccCCccccccccccccceeeeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~--~q~l~~~g---~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|+|..++ ...++.|..+.-|+-+-.++-+...++.+ +-.|.+.. -.|....||-.|||..++.++....
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 35554443 77889999889999999999988777653 34455543 3467889999999999999887643
No 373
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=44.91 E-value=42 Score=26.12 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=30.3
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCC-CCceEEE
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~q~l~ 196 (230)
.+.|...+|....+.|++++|+.+|-+.+..+.+.. .+...++
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~ 53 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLV 53 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEE
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEE
Confidence 456667788899999999999999988888776653 3344444
No 374
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=44.65 E-value=26 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=22.3
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|.|.+ +++|+.+.+++++++|+.++=..
T Consensus 10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISA-TINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEE-EETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHh
Confidence 45556 34799999999999999987765
No 375
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=44.57 E-value=22 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=22.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHh
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
.|.+ +++|+.+.++++++.|+.++-+..
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~ 32 (163)
T 1ffv_A 5 IITV-NVNGKAQEKAVEPRTLLIHFLREE 32 (163)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHhc
Confidence 4555 457999999999999999876654
No 376
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=44.57 E-value=37 Score=22.54 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=37.8
Q ss_pred eeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEE
Q 026973 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 154 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~ 196 (230)
.|.+..++++...++|.+..|+.+--.+.-++-++.++.+..+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 4788889999999999999999998888888889988877776
No 377
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.49 E-value=33 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=28.4
Q ss_pred chHHHHHHHhccccCCCCCceEEE--EcCeecCCCCcccc
Q 026973 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 210 (230)
Q Consensus 173 ~tV~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d~~~L~~ 210 (230)
.+.++|+.+.+.+++++.....|+ ..|.+.+|..-+..
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~t 67 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQT 67 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhh
Confidence 379999999999999976667776 36777776654443
No 378
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.07 E-value=60 Score=20.64 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.4
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
.+.+..++++.-.++|.+..|+.+--.+.-+..++.++.....
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 4556678888889999999999999999999999988766665
No 379
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=44.06 E-value=58 Score=20.48 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+| ..++++.+++|+.+.=..
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHHH
Confidence 567765666 788899999999887653
No 380
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=44.03 E-value=35 Score=22.75 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=42.3
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC-C-------CCCCcEEEE-c--C--cccCC-CccHhhcccc
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-I-------PPDQQRLIF-A--G--KQLED-GRTLADYNIQ 138 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~-i-------p~~~q~L~~-~--g--~~L~d-~~tL~~~~i~ 138 (230)
..+.|.+=.++|-.+.++++.+.|+.++|+.+-++.. . .++...+.. + + .++.| ++.|.+...-
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 3455666678898889999999999999998877643 2 344444442 2 2 23544 4677776654
No 381
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=43.88 E-value=62 Score=20.74 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=34.3
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCccc-CCCccHhhc
Q 026973 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLADY 135 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L-~d~~tL~~~ 135 (230)
-.+.|+.+.||+++..-|.++..+++++--.+| ++.-+ ..+.++++.
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 357788899999999999999999887665555 44433 445566543
No 382
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=43.18 E-value=59 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=33.1
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
|.|-..+|.+.++.|++.+|..||-+.+....+++.....
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~ 76 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDW 76 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTE
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 4444567889999999999999999999999998775543
No 383
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=43.06 E-value=58 Score=20.23 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.7
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
+.+..++++.-.++|.+..|+.+--.+.-+..++.++.....
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 456678888889999999999999999999999988766555
No 384
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=42.58 E-value=58 Score=25.70 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEec-------CccccCCccccc
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 58 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~~l~~ 58 (230)
|.|=..+|.+.+|.|++++|++||=+.+....+.+...-.-+|. -+.|.|+..+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 34445578999999999999999999888888776554444443 155666655443
No 385
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=42.48 E-value=29 Score=22.69 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.9
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|+.+++++.+++|+.+.=.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~ 34 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVV 34 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHH
Confidence 466665689999999999999988655
No 386
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=41.67 E-value=37 Score=24.32 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=21.2
Q ss_pred ccCCcEEEEEecCCCcHHHHHHHhh
Q 026973 7 TLTGKTITLEVESSDTIDNVKAKIQ 31 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~ 31 (230)
+.+|+.+.++++++.|+.++-+...
T Consensus 8 ~vNG~~~~v~~~~~~tLL~~Lr~~~ 32 (161)
T 1rm6_C 8 TLNGRAREDLVPDNMLLLDYLRETV 32 (161)
T ss_dssp EETTEEEEEEEETTCBHHHHHHHTT
T ss_pred EECCEEEEEecCCcCcHHHHHHHcC
Confidence 4589999999999999999877654
No 387
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=41.45 E-value=42 Score=21.53 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.6
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cC
Q 026973 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG 47 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g 47 (230)
..-|+.+.||+++...|.++.++++++-.++| |+
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ 57 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 46789999999999999999999997766555 44
No 388
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=40.57 E-value=32 Score=24.59 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
++.+.+.|++.+|=.|+|+.|+..+++.+..-.
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVN 125 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN 125 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEE
Confidence 368999999999999999999999999997654
No 389
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=39.95 E-value=69 Score=20.17 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
++|++...+| ...+++.+++|+.+.=..
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 3677765666 788999999999987664
No 390
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=39.94 E-value=85 Score=21.23 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCccHhhcc
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYN 136 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~~L~d~~tL~~~~ 136 (230)
.+-|+.+.||+++...|..+..++++.--++ .++.....+.++++.-
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY 98 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIY 98 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHH
Confidence 3568889999999999999999988775444 4666445566766543
No 391
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=39.77 E-value=27 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=21.8
Q ss_pred CEEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 1 MQIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
|.|.+ +.+|+.+.++++++.|+.++-+
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHHHH
Confidence 35666 4579999999999999999765
No 392
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=39.71 E-value=66 Score=24.84 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=34.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc
Q 026973 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q 117 (230)
+.+.|...+|....+.|+++.|+.++-+.+..+.+++.+..
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 45666677888899999999999999999999999876544
No 393
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=39.50 E-value=69 Score=21.24 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCccccc
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~~ 58 (230)
+-|+.+.||+++...|..+.++++++-.++| ++.....+.++++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 4678899999999999999999997755555 4443333444443
No 394
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=39.44 E-value=90 Score=21.34 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCccHhhcc
Q 026973 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 136 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~-~g~~L~d~~tL~~~~ 136 (230)
.+-|+.+.||+++...|.++..++++.--++| ++.....+.++++.-
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY 103 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLY 103 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHH
Confidence 45688899999999999999999888755554 554445566776553
No 395
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=39.22 E-value=1.6e+02 Score=24.04 Aligned_cols=116 Identities=13% Similarity=0.148 Sum_probs=64.7
Q ss_pred cceeeeeeecCCeeeEEEeccCeeEeeecCC-CChHHHHHHHHHhHhC-CCCCCcEEEEcCccc--------CCCccHhh
Q 026973 65 STLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQL--------EDGRTLAD 134 (230)
Q Consensus 65 ~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~-~~tV~~lK~~i~~~~~-ip~~~q~L~~~g~~L--------~d~~tL~~ 134 (230)
..+.+.+.......|+|...=.+.-.+.+.. ..||.+.-.+---... -......|..+|+.. .+...-.+
T Consensus 139 P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~ 218 (359)
T 2j58_A 139 PQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQN 218 (359)
T ss_dssp CCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGC
T ss_pred CeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccc
Confidence 3455555444556777765444444566666 6787775544222111 123456677777532 22333445
Q ss_pred cccccCCceEEEEEEecceeeEEEeeccceEEEEee-ccchHHHHHHHh
Q 026973 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKI 182 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~-~~~tV~~lK~~i 182 (230)
+-+++|++|++--. ....+.+.-.-++.-.++++ ...|+.++-...
T Consensus 219 ~~L~~GD~I~Vp~~--~~~~v~V~GeV~~pg~~~l~~~~~tl~eal~~A 265 (359)
T 2j58_A 219 HLLYHGDILFIPSN--DDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNA 265 (359)
T ss_dssp CBCCTTCEEEECBG--GGCEEEEEESBSSCEEEECBTTBCBHHHHHHHT
T ss_pred eeccCCCeEEEeec--eeeeEEeeccccCcceEeecCCCCCHHHHHHhC
Confidence 67899998876532 23335554444455567775 578888876543
No 396
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.93 E-value=43 Score=29.91 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.9
Q ss_pred CCeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEE
Q 026973 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~-~~q~L~~ 121 (230)
..+.+.|...+|....+.++..+|+.++-..|+.+.|+.. ...-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 5678889999999999999999999999999999999654 3455554
No 397
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=38.13 E-value=38 Score=22.21 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 33 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQ 33 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHH
Confidence 456655689999999999999988654
No 398
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=38.06 E-value=40 Score=21.74 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=22.5
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|....+++.+++|+.+.=..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 4667657888899999999999887653
No 399
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=37.98 E-value=37 Score=23.83 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=29.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
+++.+.|++.+|=.|+|+.|+..+++.+..-.
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 111 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVN 111 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 68999999999999999999999999987644
No 400
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=37.66 E-value=82 Score=20.40 Aligned_cols=55 Identities=5% Similarity=0.098 Sum_probs=38.1
Q ss_pred ceEEEEeeccchHHHHHHHhcc--c-cCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEE
Q 026973 163 KTITLEVESSDTIDNVKAKIQD--K-EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~--~-~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~ 222 (230)
....+++.+..||.++-+...- . ..+..+...+..+|+... .+.-+++||.|.+.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 3567788899999999766653 2 234444566767777665 45568899999864
No 401
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=37.64 E-value=41 Score=23.88 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~ 42 (230)
.+++.+.|++.+|=.|+|+.|+..+++.+..-.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVN 119 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVN 119 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 468999999999999999999999999987644
No 402
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=35.27 E-value=88 Score=21.01 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=31.8
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCCeeEEe-cCccccCCccccc
Q 026973 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~~l~~ 58 (230)
+-|+.+.||+++...|..+.++++++-.++| ++.....+.++++
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 4688899999999999999999997755555 4443333444443
No 403
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=35.06 E-value=47 Score=20.13 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=20.6
Q ss_pred ccHhhcccccCCceEEEEEEecceeeEEEe
Q 026973 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.+.+.-+...| .+.++.
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 57899999999999988655445 555553
No 404
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=34.92 E-value=54 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|...++++.+++|+.+.=.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAAR 28 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 577766788889999999999988654
No 405
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=34.91 E-value=53 Score=21.25 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEEe-eccchHHHHHHHhccccCCCCCceEEEEcCeec-CCCCccccccCCCCCEEEEEEec
Q 026973 166 TLEV-ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 166 ~~~v-~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l-~d~~~L~~~~i~~~~~i~l~~~~ 225 (230)
++.+ +...||.++-.+|+...+-.. .+.++|+-..= ...+-=.++-++++|+|.++.+.
T Consensus 28 pviL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 28 PVVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp CEEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECC
T ss_pred CEEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECCCCcEecCCCEEEEEeCC
Confidence 4666 678999999999999864211 23455543211 22333356677899999988763
No 406
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=34.88 E-value=48 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=33.1
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEE-EEcCcc
Q 026973 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 125 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L-~~~g~~ 125 (230)
..+.+.|++.+|=.++|+.++..+++.+...+- ...|+.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 578999999999999999999999999887754 466643
No 407
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=34.60 E-value=89 Score=19.87 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=31.4
Q ss_pred CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCC
Q 026973 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
++|.+...+|..+ +|.+...+-...+-++.-.+++++..
T Consensus 6 iRVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~ 45 (87)
T 1lfd_A 6 IRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDED 45 (87)
T ss_dssp EEEEESSCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSS
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCC
Confidence 3677777777754 78999999999998888899998854
No 408
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=33.94 E-value=45 Score=21.65 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=31.4
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCc
Q 026973 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 124 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~-~~g~ 124 (230)
+.+.|++..|=.++|+.++..+++.+...+-. ..|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 89999999999999999999999999887644 5554
No 409
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=33.81 E-value=52 Score=21.32 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=22.4
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|...++++.+++|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 477766789889999999999988655
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.68 E-value=36 Score=21.61 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.5
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
...+.+.|++..|=.++|+.++..+++.+...+-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 45789999999999999999999999988776544
No 411
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=39.01 E-value=9.2 Score=25.19 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=47.6
Q ss_pred cHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChHHH
Q 026973 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
....|++.|.+..++++. .+.++..|.++|+.+=..+.+.......+.+.+... ++....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 566788888888888764 456677778899877777777766655555544311 1234458888
Q ss_pred HHHHHHhH
Q 026973 102 VKAKIQDK 109 (230)
Q Consensus 102 lK~~i~~~ 109 (230)
|-..|.+.
T Consensus 91 l~~~I~~~ 98 (103)
T 2lte_A 91 LFQLVEKH 98 (103)
Confidence 87776654
No 412
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=32.55 E-value=50 Score=21.13 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=32.9
Q ss_pred CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026973 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
++|+|+.++. .++.+++..-+-+.++=+++.+..++.++
T Consensus 6 YrITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~ 46 (88)
T 3cjl_A 6 YQITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPE 46 (88)
T ss_dssp EEEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHH
T ss_pred EEEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHH
Confidence 3789987754 78999999999999999999888887763
No 413
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=32.34 E-value=1e+02 Score=19.93 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=38.2
Q ss_pred CeeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
...+.+..++++.-.++|.+..|+.+--.+.-+..++.++.....
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 346677788999889999999999999999999999988766655
No 414
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=31.82 E-value=64 Score=21.98 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=22.3
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|....+++.+++|+.+.=.
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~ 49 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAI 49 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 567766789899999999999998644
No 415
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=31.12 E-value=42 Score=23.86 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeE
Q 026973 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l 43 (230)
+++.+.|+..+|=.|+|+.|+..+++.+..-.-
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 122 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNT 122 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEe
Confidence 689999999999999999999999999876443
No 416
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=31.02 E-value=59 Score=25.93 Aligned_cols=43 Identities=7% Similarity=0.216 Sum_probs=32.8
Q ss_pred CEEEEEccCCcEEEEEecC--CCcHHHHHHHhhhhhCCCCC---CeeEEecC
Q 026973 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIFAG 47 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gip~~---~q~l~~~g 47 (230)
++|.|-.++|....++++. .+|+.|+- +..|++.. .--|++.+
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~~~ 53 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWICS 53 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEEEC
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEEEC
Confidence 4788989999999999999 99999993 34788753 34455543
No 417
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=30.34 E-value=57 Score=20.46 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.8
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+.+.-+..-|+.++..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4555668999999999998888888777654
No 418
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=30.11 E-value=7.1 Score=25.62 Aligned_cols=75 Identities=11% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChH
Q 026973 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
.+....+++.|.+..++++. .+.++..|.++|+.+=..+.+.......+.+.+... .+....||
T Consensus 16 ~~i~~~l~~ila~~l~v~~~---------~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~-------~l~~~~TV 79 (100)
T 1vku_A 16 KKLIAKFVEIASEKMGKDLE---------TVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDE-------EISKIRKV 79 (100)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---------SCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHH-------HHTTCCBH
T ss_pred HHHHHHHHHHHHHHHCCCHH---------HCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHH-------HHHcCCCH
Confidence 34567899999999998874 567777888899876666666655443333333211 13455689
Q ss_pred HHHHHHHHhHh
Q 026973 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
++|-..|....
T Consensus 80 ~~L~~~I~~~~ 90 (100)
T 1vku_A 80 KDLIDIVIKKL 90 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887664
No 419
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=29.06 E-value=1.2e+02 Score=19.80 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=33.5
Q ss_pred eEEEe-ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc
Q 026973 79 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 79 v~v~~-~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~~~g~~ 125 (230)
|.||. ..|++..+.++..-+..+|..++...+|-+ ..|.|.+.+
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecce
Confidence 34443 468889999999999999999999999963 345555443
No 420
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=28.57 E-value=30 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=19.3
Q ss_pred cCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 202 LEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 202 l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
+.|...| -+++.|+.|++.+...+|.|
T Consensus 45 v~~~~~l--~~lk~Gd~V~F~~~~~~~~~ 71 (80)
T 2qcp_X 45 ITPQTKM--SEIKTGDKVAFNFVQQGNLS 71 (80)
T ss_dssp CCTTCEE--CCCCTTCEEEEEEEEETTEE
T ss_pred ccChhhh--hcCCCCCEEEEEEEEeCCEE
Confidence 3454444 36889999999988777654
No 421
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=28.54 E-value=1.2e+02 Score=19.61 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=35.9
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
.|.+..++++.-.++|.+..|+.+--.+.-+..++.++.....
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 4556678998889999999999999999999999988665554
No 422
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=28.16 E-value=1.4e+02 Score=22.45 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=41.0
Q ss_pred cccccCCceEEEEEEecceeeEEEeeccceEEEE-eeccchHHHHHHHhccccCCCCCceEEEEcC
Q 026973 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g 199 (230)
.++..+..+++++.-.+.....++....+...+. .++..+...+|+++....+...+..+-...|
T Consensus 50 h~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pG 115 (208)
T 2qwv_A 50 QSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPG 115 (208)
T ss_dssp SSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETT
T ss_pred ccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCC
Confidence 4678888888887765556667776565666777 7888888888999988554333333333334
No 423
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=27.92 E-value=80 Score=19.35 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.3
Q ss_pred ccHhhcccccCCceEEEEEEe
Q 026973 130 RTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~ 150 (230)
+.|.+.|+.+|+.|.+.-+..
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p 46 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAP 46 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 468899999999998876643
No 424
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=27.77 E-value=1.3e+02 Score=19.82 Aligned_cols=86 Identities=10% Similarity=0.163 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCCh
Q 026973 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
...=..++-+.+.+.+|.|++.+...+.. +..+. ++ +++ .+-.-+.|+...|... +- ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~---g~~-------~~~~~i~I~~~~g~~~--eq-k~~l 76 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLA-----GQRIT-HG---ASR-------NPVAVIKVESIGALSA--DD-NIRH 76 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCCC-BT---TBC-------SSCEEEEEEESSCCCH--HH-HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEEC-----CccEE-Ec---CCC-------CCeEEEEEEEecCCCH--HH-HHHH
Confidence 44557888888999999999988877742 11111 11 111 1222344443443321 00 0123
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEEcC
Q 026973 99 IDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 99 V~~lK~~i~~~~~ip~~~q~L~~~g 123 (230)
+..+-+.+++..|+|+++..+.+..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 77 TQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEE
Confidence 5666667788899999998887654
No 425
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=27.69 E-value=1.3e+02 Score=19.66 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=25.8
Q ss_pred CcHHHHHHHhhhhhCCCCC--CeeEE--ecCccccCCc
Q 026973 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGR 54 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gip~~--~q~l~--~~g~~L~d~~ 54 (230)
.+..||+.|....++++.+ .-+|+ -+|-.++|+.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEe 74 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDD 74 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechh
Confidence 5899999999999999763 24554 4688886653
No 426
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=27.57 E-value=9.1 Score=23.46 Aligned_cols=73 Identities=14% Similarity=0.323 Sum_probs=46.4
Q ss_pred CcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccc-cccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChH
Q 026973 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+....+++.+.+..|+++. .+.++..+ .++|+.+=..+.+.........+.+... .+....||
T Consensus 7 ~i~~~l~~~i~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~-------~~~~~~Tv 70 (82)
T 2cnr_A 7 EIVAGLAEIVNEIAGIPVE---------DVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDD-------DVKNLKTV 70 (82)
T ss_dssp HHHHHHHHHHHHHSCCCTT---------TCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGG-------GGGTCSBH
T ss_pred HHHHHHHHHHHHHhCCCHH---------HCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHH-------HHHHcCCH
Confidence 4456788888888888764 45666677 6888876666666555444333333211 23445689
Q ss_pred HHHHHHHHhH
Q 026973 100 DNVKAKIQDK 109 (230)
Q Consensus 100 ~~lK~~i~~~ 109 (230)
+++-..|.++
T Consensus 71 ~~l~~~i~~~ 80 (82)
T 2cnr_A 71 GDATKYILDH 80 (82)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 427
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=27.55 E-value=1.1e+02 Score=19.68 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=44.4
Q ss_pred CceEEEEEEecceeeEEEeeccceEEEEeeccchHHHHHHHhccccCCCCCceEEEEcCeec-CCCCcccc----ccCCC
Q 026973 141 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD----YNIQK 215 (230)
Q Consensus 141 ~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~l~~~g~~l-~d~~~L~~----~~i~~ 215 (230)
..|.+..+..+...+. +...+.|+.+.|+.++..-|.++..+. ...|+.++..+ ..+.++.+ |+. +
T Consensus 12 ~KV~V~~~~~~~~P~l------~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kd-D 82 (96)
T 1wz3_A 12 QKIVVHLRATGGAPIL------KQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGF-D 82 (96)
T ss_dssp CEEEEEEEECTTCCCC------SCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCB-T
T ss_pred CeEEEEEEECCCCCcc------cccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCC-C
Confidence 3455555555443221 234678889999999999999998877 55554444233 44555543 344 4
Q ss_pred CCEEEEEEe
Q 026973 216 ESTLHLVLR 224 (230)
Q Consensus 216 ~~~i~l~~~ 224 (230)
| -+++.+.
T Consensus 83 G-fLyi~Ys 90 (96)
T 1wz3_A 83 G-KLVVNYA 90 (96)
T ss_dssp T-BEEEEEE
T ss_pred C-EEEEEEe
Confidence 4 4555553
No 428
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.37 E-value=29 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=31.4
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCCee-EEecC
Q 026973 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAG 47 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~-l~~~g 47 (230)
.+.+.+.|++.+|=.|+|+.|+..+++.+..-. +...|
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g 169 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD 169 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC
Confidence 468999999999999999999999999986643 33444
No 429
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=27.21 E-value=1.3e+02 Score=19.52 Aligned_cols=85 Identities=6% Similarity=0.104 Sum_probs=49.3
Q ss_pred CCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChH
Q 026973 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
..=..++-+.+.+.+|.|++.+...+.. +..+. + .++ ..+-.-+.|+...|.+. +- ...-+
T Consensus 17 ~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~---~g~-------~~~~~~v~i~~~~g~~~--eq-k~~l~ 77 (115)
T 1uiz_A 17 DTLLSDLTKQLAKATGKPAEYIAIHIVP-----DQIMS-F---GDS-------TDPCAVCSLCSIGKIGG--PQ-NKSYT 77 (115)
T ss_dssp TTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE-E---TTB-------CSSCEEEEEEESSCCSH--HH-HHHHH
T ss_pred HHHHHHHHHHHHHHHCcChhHEEEEEEC-----CcceE-E---CCC-------CCCeEEEEEEEecCCCH--HH-HHHHH
Confidence 4447788888999999999988877632 11111 1 111 12223344443433321 00 01235
Q ss_pred HHHHHHHHhHhCCCCCCcEEEEcC
Q 026973 100 DNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 100 ~~lK~~i~~~~~ip~~~q~L~~~g 123 (230)
..+-+.+++..|+|+++..+.+..
T Consensus 78 ~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 78 KLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEEE
Confidence 666667788899999998877644
No 430
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=26.85 E-value=33 Score=21.85 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=19.6
Q ss_pred cCCCCccccccCCCCCEEEEEEeccCCCC
Q 026973 202 LEDGRTLADYNIQKESTLHLVLRLRGGQF 230 (230)
Q Consensus 202 l~d~~~L~~~~i~~~~~i~l~~~~~~g~~ 230 (230)
+.|...| -+++.|+.|.+.+...+|.|
T Consensus 53 v~~~~~l--~~lk~Gd~V~F~~~~~~~~~ 79 (88)
T 2vb2_X 53 ITPQTKM--SEIKTGDKVAFNFVQQGNLS 79 (88)
T ss_dssp CCTTCEE--CCCCTTCEEEEEEEEETTEE
T ss_pred cCChhhh--hcCCCCCEEEEEEEEeCCEE
Confidence 3454445 46899999999998777654
No 431
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=25.17 E-value=91 Score=19.37 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred ccHhhcccccCCceEEEEEEecceeeEEE
Q 026973 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~tL~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+.|.+.|+.+|+.|.+.-+...+-.+.+.
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p~~gpi~v~ 57 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAPMGDPIALR 57 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCSEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46899999999999887665323233444
No 432
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.13 E-value=97 Score=19.10 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=38.8
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeee
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|+|.+.+|..+ ++..++|+.|+=..|....|-.. .--..+|+..+-+ +.+.+++.+.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEE
Confidence 588988888764 57889999999888765554211 1223577655433 445666666554
No 433
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=24.97 E-value=9.1 Score=24.82 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=52.3
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccc-cccccccccceeeeeeecCCeeeEEEeccCeeEeee
Q 026973 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~ 92 (230)
......++....|++.+.+..|++++ .+.++..| .++|+.+=..+.+.......+.+.+... +
T Consensus 15 ~~~~t~~~i~~~l~~iia~~l~~~~~---------~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~-------~ 78 (97)
T 3ejb_A 15 PRGSHMSTIEERVKKIIGEQLGVKQE---------EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDE-------E 78 (97)
T ss_dssp ---CCCCCHHHHHHHHHHHHSCCCTT---------TSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHH-------H
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCHH---------HCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHH-------H
Confidence 34556677889999999999999874 56677777 6999887777777665544333333211 1
Q ss_pred cCCCChHHHHHHHHHhH
Q 026973 93 VESSDTIDNVKAKIQDK 109 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~ 109 (230)
+....||++|-..|.++
T Consensus 79 l~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 79 AEKITTVQAAIDYINGH 95 (97)
T ss_dssp HHHCCBHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHh
Confidence 22345888888777654
No 434
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=23.82 E-value=85 Score=19.88 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|....+++.+++|+.+.=..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 3455444577888999999999987654
No 435
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.53 E-value=1.5e+02 Score=19.19 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChHHHH
Q 026973 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102 (230)
Q Consensus 23 v~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~l 102 (230)
+.++-+.+.+.+|.|++.+.+.+. ++..+. ..++ ..+-.-+.|+...|.+. +- ...-+..+
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~v~~~-----~~~~~~----~~g~-------~~~~~~v~i~~~~g~t~--eq-k~~l~~~i 80 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVMTSLQ-----CGVPMT----FSGN-------TEPTCYVEVKSIGALDG--SR-TQEVSELV 80 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEE-----CSCCCC----BTTB-------CSSCEEEEEEESSCCCT--TH-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHEEEEEE-----CCCceE----ECCC-------CCcEEEEEEEEecCCCH--HH-HHHHHHHH
Confidence 556666677789999998877653 221111 1111 12233344443333321 00 01246677
Q ss_pred HHHHHhHhCCCCCCcEEEEcC
Q 026973 103 KAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 103 K~~i~~~~~ip~~~q~L~~~g 123 (230)
-+.+++..|+|+++..+.+..
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 81 CGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHhCcCcccEEEEEEE
Confidence 778888899999998877644
No 436
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=23.37 E-value=1e+02 Score=19.55 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=18.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++... |...++++.+++|+.+.=..
T Consensus 5 v~~~~~-~~~~~~~~~~g~tlL~a~~~ 30 (98)
T 1iue_A 5 ITLRTN-DGEKKIECNEDEYILDASER 30 (98)
T ss_dssp EEEEET-TEEEEEEEETTSCHHHHHHH
T ss_pred EEEEeC-CCeEEEEeCCCCcHHHHHHH
Confidence 444443 44788999999999887654
No 437
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=23.21 E-value=1.5e+02 Score=18.70 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=18.6
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHH
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+| ..++++.+++|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 5 VTLVTPTG-NVEFQCPDDVYILDAAEE 30 (97)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCc-eEEEEeCCCCcHHHHHHH
Confidence 44443344 788999999999887654
No 438
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=23.04 E-value=1.7e+02 Score=19.35 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=36.1
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026973 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~ip~~~q~L~ 120 (230)
.|.+..++++.-.++|.+..|+.+--.+.-+..++.++....+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 4666678888889999999999999999999999988766555
No 439
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=22.98 E-value=14 Score=23.41 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=45.7
Q ss_pred CcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccc-cccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChH
Q 026973 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~-~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+|..+|++.+.+.+++++. .+.++.++.+ +|+.+=..+.+.......+.|.+. .-++..-.||
T Consensus 2 ~tle~l~~I~~e~l~~d~~---------~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~-------~~~l~~~~TV 65 (87)
T 2kjs_A 2 PTLDALTPIFRQVFDDDSI---------VLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFA-------LGELQKLKNV 65 (87)
T ss_dssp CSHHHHHHHHHHHHTCSSC---------CCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCC-------HHHHTTCCSH
T ss_pred chHHHHHHHHHHHhCCCcc---------ccCCCCCcccCCCCChHHHHHHHHHHHHHhCceec-------HHHHHcCCCH
Confidence 4788999999999999885 4566666655 566555555554443322222221 0123345689
Q ss_pred HHHHHHHHhHh
Q 026973 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|.++.
T Consensus 66 ~dl~~~I~~kl 76 (87)
T 2kjs_A 66 GDLADLVDKKL 76 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888777654
No 440
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=22.67 E-value=45 Score=21.57 Aligned_cols=27 Identities=4% Similarity=0.161 Sum_probs=21.7
Q ss_pred EEEEEccCCcEEEEEecCCCcHHHHHH
Q 026973 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|...++++.+++|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVAT 28 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 567755688888999999999988654
No 441
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=22.49 E-value=24 Score=22.57 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=49.8
Q ss_pred CCcHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChH
Q 026973 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
..|..+|++.|.+..+++... ....+.++..+.++|+.+=..+.+.......+.|.+. .. .+....||
T Consensus 3 ~~t~~~l~~ii~~~l~~~~~~-----~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~--~~-----~l~~~~Tv 70 (95)
T 1nq4_A 3 LLTLSDLLTLLRECAGEEESI-----DLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLG--DD-----AVEKATTP 70 (95)
T ss_dssp CCCHHHHHHHHHHHHTCSSTT-----CSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSC--TT-----HHHHCCSH
T ss_pred cccHHHHHHHHHHHHcccccc-----ccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccC--HH-----HHHcCCCH
Confidence 468899999999999987631 1235677778888888766666665544332222221 00 01134588
Q ss_pred HHHHHHHHhHh
Q 026973 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
.++-..|....
T Consensus 71 ~~l~~~i~~~~ 81 (95)
T 1nq4_A 71 RALIEMTNASL 81 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 442
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=22.11 E-value=2.1e+02 Score=20.04 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=42.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCC-CCCCeeEEec---------------------Ccc-ccCCcccccccccccccee
Q 026973 12 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---------------------GKQ-LEDGRTLADYNIQKESTLH 68 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi-p~~~q~l~~~---------------------g~~-L~d~~~l~~~~i~~~~~i~ 68 (230)
.+.|-...++|+.||-..|.+..-- +...=+|.|. |+. -+|++||++.++.-|+-|.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 4667778999999999988876421 1111223222 221 2567999999999999888
Q ss_pred eeeeecC
Q 026973 69 LVLRLRG 75 (230)
Q Consensus 69 l~~~~~~ 75 (230)
+.+.++.
T Consensus 135 vaI~pP~ 141 (143)
T 4a6q_A 135 IAITPPN 141 (143)
T ss_dssp EEEECGG
T ss_pred EEEeCCC
Confidence 8876653
No 443
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=21.90 E-value=38 Score=20.52 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=46.0
Q ss_pred cHHHHHHHhhhhhCCCCCCeeEEecCccccCCccccccccccccceeeeeeecCCeeeEEEeccCeeEeeecCCCChHHH
Q 026973 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
....+++.+.+..++++. ..+.++..+.++|+.+=..+.+.......+.+.+.. -++....||++
T Consensus 5 i~~~l~~i~~~~l~~~~~--------~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~-------~~~~~~~Tv~~ 69 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGAD--------VVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDE-------DKAQDISTIQQ 69 (82)
T ss_dssp HHHHHHHHHHHHTTCSSS--------SCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCG-------GGSSSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcc--------cccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCH-------HHHHhCCCHHH
Confidence 456788888999998763 246667778888887666666655443333332211 11334568988
Q ss_pred HHHHHHhH
Q 026973 102 VKAKIQDK 109 (230)
Q Consensus 102 lK~~i~~~ 109 (230)
+-..|.+.
T Consensus 70 l~~~i~~~ 77 (82)
T 2ava_A 70 AADVIEGL 77 (82)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 444
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.84 E-value=1.1e+02 Score=20.61 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=30.4
Q ss_pred CEEEEEccCCcE-EEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026973 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (230)
++|.+...+|.. .+|.+...+-...+-++.-++++++..
T Consensus 31 IRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~ 70 (115)
T 1rax_A 31 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEE 70 (115)
T ss_dssp EEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTS
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCC
Confidence 367777667764 478899999998888888889998853
No 445
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=21.75 E-value=98 Score=24.59 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCeeeEEEeccCeeEeeecCC--CChHHHHHHHHHhHhCCCC
Q 026973 75 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~ip~ 114 (230)
+-+++.|...+|....++++. ++|+.++- +..|++.
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~ 41 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQ 41 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCT
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCc
Confidence 456788888999999999999 89999994 3467764
No 446
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=21.51 E-value=73 Score=26.09 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=39.1
Q ss_pred EEeccCe----eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEc----Cc--ccCCCccHhhc
Q 026973 81 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA----GK--QLEDGRTLADY 135 (230)
Q Consensus 81 v~~~~g~----~~~i~v~~~~tV~~lK~~i~~~~~ip~~-~q~L~~~----g~--~L~d~~tL~~~ 135 (230)
|...+|. ...+.+++.+|+.++-..|+++.|+... ..-|.+. |. -|+.+.++++-
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4455666 8899999999999999999999998432 2345542 11 36667777653
No 447
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=20.87 E-value=1.2e+02 Score=20.34 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEeccCCC
Q 026973 188 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ 229 (230)
Q Consensus 188 i~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~~~~g~ 229 (230)
.+|=-.||.+.|.+.+|...=+.|....|....-+-|...|+
T Consensus 58 ~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK~~~GE 99 (115)
T 3eud_A 58 LSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNKNE 99 (115)
T ss_dssp ETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEESSTTC
T ss_pred cCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEcCCcCCC
Confidence 344445788999999988888899998877544455655554
No 448
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=20.81 E-value=75 Score=20.23 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.8
Q ss_pred EEEEccCCcEEEEEecCCCcHHHHHHHhhhh
Q 026973 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~ 33 (230)
|.+..-+|.+|.++|+.+.-+..-|+.++..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 3455668999999999998777777766654
No 449
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.29 E-value=49 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCCCC
Q 026973 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGQF 230 (230)
Q Consensus 179 K~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g~~ 230 (230)
|+.+-+++++.+.+...+ +..+--..+||.+.|++|.+..+ ..+|.|
T Consensus 156 ~~~lL~~y~i~~~qLP~I-----~~~DPv~~~~g~k~GdVvkI~R~s~tag~~ 203 (210)
T 3h0g_E 156 KKELLDRYKLRETQLPRI-----QLADPVARYLGLKRGEVVKIVRRSETSGRY 203 (210)
T ss_dssp HHHHHHHTCCCTTTSCCC-----CTTCHHHHHHTCCTTCEEEEECCCCTTSCC
T ss_pred HHHHHHHcCCCHHHCCcc-----cccCcchhhhCCCCCCEEEEEeCCCCCCCc
Confidence 345555667766655443 33333456779999999998776 345543
No 450
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=20.20 E-value=48 Score=25.09 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHHhccccCCCCCceEEEEcCeecCCCCccccccCCCCCEEEEEEe-ccCCC
Q 026973 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGQ 229 (230)
Q Consensus 179 K~~i~~~~gi~~~~q~l~~~g~~l~d~~~L~~~~i~~~~~i~l~~~-~~~g~ 229 (230)
|+.+-+++++.+++...+ +..+--.++||.+.|+.|.+..+ ..+|.
T Consensus 161 ~~~lL~~y~i~~~qLP~I-----~~~DPvar~~g~k~G~vvkI~R~s~tag~ 207 (215)
T 1dzf_A 161 KRELLKRYRLKESQLPRI-----QRADPVALYLGLKRGEVVKIIRKSETSGR 207 (215)
T ss_dssp HHHHHHHTTCCGGGSCEE-----CTTCHHHHHHTCCTTCEEEEECTTCSSST
T ss_pred HHHHHHHcCCCHHHCCce-----eccChhhHHhCCcCCCEEEEEECCCCCCC
Confidence 345556667766665543 33333457779999999998765 34554
No 451
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=20.15 E-value=1.8e+02 Score=26.44 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=39.5
Q ss_pred eEEEEeeccchHHHHHHHhccccC--CCC-C-------ceEEEEcCe--e------cCCCCccccccCCCCCEEEEE
Q 026973 164 TITLEVESSDTIDNVKAKIQDKEG--IPP-D-------QQRLIFAGK--Q------LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~g--i~~-~-------~q~l~~~g~--~------l~d~~~L~~~~i~~~~~i~l~ 222 (230)
...+.++.+.|+.+|-+.++.+.. +.. + ...++|... . -.-+++|.+.|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 456778878899999888888643 321 1 134455421 1 123578999999999998764
Done!