Query 026974
Match_columns 230
No_of_seqs 294 out of 1748
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 1E-19 3.5E-24 130.7 5.2 65 61-125 4-68 (80)
2 2cra_A Homeobox protein HOX-B1 99.8 4.6E-20 1.6E-24 129.3 2.4 63 61-123 4-66 (70)
3 2dmu_A Homeobox protein goosec 99.8 9E-20 3.1E-24 127.7 3.4 63 61-123 4-66 (70)
4 2vi6_A Homeobox protein nanog; 99.8 5.2E-20 1.8E-24 126.0 1.9 60 63-122 2-61 (62)
5 2h1k_A IPF-1, pancreatic and d 99.8 8.2E-20 2.8E-24 125.4 2.7 60 63-122 2-61 (63)
6 2djn_A Homeobox protein DLX-5; 99.8 9.8E-20 3.4E-24 127.6 2.8 64 60-123 3-66 (70)
7 2e1o_A Homeobox protein PRH; D 99.8 1.4E-19 4.6E-24 126.9 3.4 63 61-123 4-66 (70)
8 2da2_A Alpha-fetoprotein enhan 99.8 9.7E-20 3.3E-24 127.5 2.6 64 60-123 3-66 (70)
9 1nk2_P Homeobox protein VND; h 99.8 2.2E-19 7.7E-24 128.0 4.2 63 62-124 7-69 (77)
10 2dmq_A LIM/homeobox protein LH 99.8 2E-19 6.7E-24 129.1 3.8 64 61-124 4-67 (80)
11 2dms_A Homeobox protein OTX2; 99.8 1.8E-19 6.3E-24 129.4 3.4 63 61-123 4-66 (80)
12 2dmt_A Homeobox protein BARH-l 99.8 1.5E-19 5.3E-24 129.8 2.7 61 63-123 16-76 (80)
13 2kt0_A Nanog, homeobox protein 99.8 3.6E-19 1.2E-23 128.9 4.2 61 63-123 21-81 (84)
14 3a01_A Homeodomain-containing 99.8 1.2E-19 4.2E-24 134.0 1.7 64 64-127 17-80 (93)
15 2da1_A Alpha-fetoprotein enhan 99.8 1.4E-19 4.9E-24 126.6 2.0 63 61-123 4-66 (70)
16 2hdd_A Protein (engrailed home 99.8 1.7E-19 6E-24 122.9 2.3 58 64-121 3-60 (61)
17 1puf_A HOX-1.7, homeobox prote 99.7 4.7E-19 1.6E-23 126.4 4.0 61 64-124 13-73 (77)
18 1ig7_A Homeotic protein MSX-1; 99.7 2.8E-19 9.7E-24 120.6 2.6 57 65-121 1-57 (58)
19 1b8i_A Ultrabithorax, protein 99.7 2.1E-19 7.3E-24 129.4 2.0 61 63-123 19-79 (81)
20 1uhs_A HOP, homeodomain only p 99.7 4.4E-19 1.5E-23 124.9 3.3 60 64-123 1-61 (72)
21 1zq3_P PRD-4, homeotic bicoid 99.7 5.5E-19 1.9E-23 123.1 3.7 60 64-123 2-61 (68)
22 2l7z_A Homeobox protein HOX-A1 99.7 5.2E-19 1.8E-23 124.9 3.6 62 62-123 5-66 (73)
23 1bw5_A ISL-1HD, insulin gene e 99.7 1.9E-19 6.4E-24 124.7 1.2 60 64-123 3-62 (66)
24 1yz8_P Pituitary homeobox 2; D 99.7 1.7E-19 5.7E-24 125.7 0.9 61 63-123 2-62 (68)
25 1jgg_A Segmentation protein EV 99.7 3.7E-19 1.3E-23 120.9 2.3 58 65-122 2-59 (60)
26 2da3_A Alpha-fetoprotein enhan 99.7 2.3E-19 7.7E-24 128.7 1.2 60 64-123 17-76 (80)
27 1wh5_A ZF-HD homeobox family p 99.7 3.6E-19 1.2E-23 128.0 2.2 59 63-121 16-78 (80)
28 1ahd_P Antennapedia protein mu 99.7 3.7E-19 1.3E-23 124.0 1.8 60 64-123 2-61 (68)
29 2da4_A Hypothetical protein DK 99.7 4E-19 1.4E-23 127.6 1.9 61 62-122 6-70 (80)
30 2k40_A Homeobox expressed in E 99.7 7.2E-19 2.5E-23 122.1 2.8 60 64-123 1-60 (67)
31 1fjl_A Paired protein; DNA-bin 99.7 8.2E-19 2.8E-23 126.2 3.2 60 64-123 18-77 (81)
32 2ecc_A Homeobox and leucine zi 99.7 4.8E-19 1.6E-23 125.8 1.9 58 67-124 6-63 (76)
33 1ftt_A TTF-1 HD, thyroid trans 99.7 7E-19 2.4E-23 122.6 2.7 60 64-123 2-61 (68)
34 3rkq_A Homeobox protein NKX-2. 99.7 8.9E-19 3.1E-23 117.8 3.0 56 65-120 3-58 (58)
35 2r5y_A Homeotic protein sex co 99.7 7.8E-19 2.7E-23 128.3 2.8 61 62-122 26-86 (88)
36 2m0c_A Homeobox protein arista 99.7 1.1E-18 3.7E-23 123.5 2.7 62 62-123 7-68 (75)
37 3a03_A T-cell leukemia homeobo 99.7 9E-19 3.1E-23 117.5 2.2 54 69-122 2-55 (56)
38 1wh7_A ZF-HD homeobox family p 99.7 7.1E-19 2.4E-23 126.5 1.6 58 63-121 16-78 (80)
39 1akh_A Protein (mating-type pr 99.7 7.2E-19 2.4E-23 119.8 1.5 58 63-120 4-61 (61)
40 2hi3_A Homeodomain-only protei 99.7 2E-18 6.7E-23 121.9 3.4 59 65-123 3-62 (73)
41 3a02_A Homeobox protein arista 99.7 9.7E-19 3.3E-23 118.8 1.7 57 67-123 2-58 (60)
42 2da5_A Zinc fingers and homeob 99.7 2.1E-18 7.2E-23 122.4 3.2 57 67-123 10-66 (75)
43 3nar_A ZHX1, zinc fingers and 99.7 1.4E-18 4.8E-23 129.0 1.9 62 64-125 25-86 (96)
44 1b72_A Protein (homeobox prote 99.7 2.9E-18 9.9E-23 127.5 3.3 62 62-123 32-93 (97)
45 1x2n_A Homeobox protein pknox1 99.7 3.3E-18 1.1E-22 120.7 3.3 63 61-123 4-69 (73)
46 2ly9_A Zinc fingers and homeob 99.7 2.9E-18 9.8E-23 121.2 2.6 60 64-123 6-65 (74)
47 2dn0_A Zinc fingers and homeob 99.7 2.4E-18 8.3E-23 122.4 1.5 58 66-123 10-67 (76)
48 1du6_A PBX1, homeobox protein 99.7 2.5E-18 8.7E-23 118.2 1.4 58 64-121 3-63 (64)
49 2cqx_A LAG1 longevity assuranc 99.7 1.4E-18 4.7E-23 122.6 -0.2 60 63-122 7-67 (72)
50 2cuf_A FLJ21616 protein; homeo 99.7 5.9E-18 2E-22 125.4 3.1 63 61-123 4-81 (95)
51 1puf_B PRE-B-cell leukemia tra 99.7 4.1E-18 1.4E-22 120.2 1.8 60 65-124 2-64 (73)
52 1e3o_C Octamer-binding transcr 99.7 3.9E-19 1.3E-23 143.7 -4.9 61 62-122 99-159 (160)
53 2dmn_A Homeobox protein TGIF2L 99.7 1.5E-17 5E-22 120.4 3.7 63 61-123 4-69 (83)
54 1k61_A Mating-type protein alp 99.7 8.5E-18 2.9E-22 114.1 2.3 55 68-122 2-59 (60)
55 1b72_B Protein (PBX1); homeodo 99.7 1.2E-17 4E-22 121.6 3.2 61 65-125 2-65 (87)
56 2ecb_A Zinc fingers and homeob 99.7 7.4E-18 2.5E-22 123.4 2.0 54 70-123 17-70 (89)
57 2da6_A Hepatocyte nuclear fact 99.7 2.3E-17 8E-22 123.1 4.7 63 61-123 3-86 (102)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 1.1E-17 3.8E-22 133.2 1.7 94 17-122 52-145 (146)
59 1wi3_A DNA-binding protein SAT 99.7 1.9E-17 6.5E-22 114.0 2.3 60 61-120 4-64 (71)
60 2xsd_C POU domain, class 3, tr 99.7 1.2E-18 4.1E-23 141.4 -4.5 98 17-124 62-159 (164)
61 3nau_A Zinc fingers and homeob 99.7 2.1E-17 7.1E-22 113.8 1.9 53 71-123 11-63 (66)
62 1le8_B Mating-type protein alp 99.6 1.5E-17 5E-22 120.3 0.9 61 66-126 4-67 (83)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 3.1E-17 1.1E-21 119.5 2.7 57 65-121 28-87 (87)
64 2dmp_A Zinc fingers and homeob 99.6 2.8E-17 9.5E-22 120.4 2.0 53 71-123 20-72 (89)
65 2l9r_A Homeobox protein NKX-3. 99.6 2E-17 6.8E-22 115.6 0.9 55 70-124 10-64 (69)
66 1x2m_A LAG1 longevity assuranc 99.6 2.4E-17 8.4E-22 113.3 1.2 50 73-122 9-59 (64)
67 3d1n_I POU domain, class 6, tr 99.6 4.7E-17 1.6E-21 130.2 2.9 60 62-121 91-150 (151)
68 2e19_A Transcription factor 8; 99.6 5.6E-17 1.9E-21 111.7 2.2 52 70-121 9-60 (64)
69 1lfb_A Liver transcription fac 99.6 5.7E-17 1.9E-21 121.0 1.4 61 63-123 8-89 (99)
70 3l1p_A POU domain, class 5, tr 99.6 1.4E-16 4.8E-21 128.0 2.7 96 17-122 59-154 (155)
71 3k2a_A Homeobox protein MEIS2; 99.6 2E-16 6.9E-21 109.8 1.7 59 70-128 4-65 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 2.4E-16 8.2E-21 127.6 1.6 63 61-123 94-156 (164)
73 1ic8_A Hepatocyte nuclear fact 99.4 1.2E-14 4E-19 120.7 -1.5 59 63-121 114-193 (194)
74 2da7_A Zinc finger homeobox pr 99.4 4.1E-14 1.4E-18 97.9 0.9 46 73-118 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 1.2E-13 4E-18 100.6 2.1 57 70-126 11-70 (89)
76 2h8r_A Hepatocyte nuclear fact 99.3 4.9E-13 1.7E-17 112.4 1.4 57 64-120 142-219 (221)
77 1mh3_A Maltose binding-A1 home 99.2 7.5E-13 2.6E-17 119.5 0.3 55 66-120 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 1.7E-10 6E-15 70.2 -2.9 22 106-127 1-22 (37)
79 2ys9_A Homeobox and leucine zi 94.1 0.0086 3E-07 41.0 -0.1 39 76-114 18-56 (70)
80 3iv1_A Tumor susceptibility ge 65.6 21 0.00072 24.6 6.2 55 114-168 13-67 (78)
81 1hjb_A Ccaat/enhancer binding 62.8 12 0.00041 26.3 4.7 26 139-164 49-74 (87)
82 1hlv_A CENP-B, major centromer 58.2 4.3 0.00015 29.7 1.8 48 67-117 4-51 (131)
83 1t2k_D Cyclic-AMP-dependent tr 55.6 33 0.0011 22.0 5.7 32 130-161 26-57 (61)
84 2wt7_B Transcription factor MA 54.6 18 0.0006 25.7 4.4 33 138-170 53-85 (90)
85 2glo_A Brinker CG9653-PA; prot 54.5 2.3 7.9E-05 27.1 -0.3 44 69-113 4-47 (59)
86 2jn6_A Protein CGL2762, transp 53.8 9.5 0.00033 26.4 2.9 41 69-113 4-45 (97)
87 2elh_A CG11849-PA, LD40883P; s 51.0 9 0.00031 26.2 2.4 40 68-112 20-59 (87)
88 1ci6_A Transcription factor AT 50.0 48 0.0016 21.5 5.7 35 129-163 26-60 (63)
89 1tc3_C Protein (TC3 transposas 47.8 6.8 0.00023 22.7 1.2 40 70-114 5-44 (51)
90 3hug_A RNA polymerase sigma fa 46.1 9.7 0.00033 26.2 1.9 46 70-120 37-82 (92)
91 1gu4_A CAAT/enhancer binding p 44.8 71 0.0024 21.8 6.2 21 146-166 49-69 (78)
92 1jko_C HIN recombinase, DNA-in 43.4 3.2 0.00011 24.7 -0.9 40 71-115 6-45 (52)
93 1uii_A Geminin; human, DNA rep 41.8 48 0.0016 23.0 4.8 33 136-168 42-74 (83)
94 3i5g_B Myosin regulatory light 41.7 44 0.0015 24.8 5.3 39 68-106 7-50 (153)
95 2o8x_A Probable RNA polymerase 38.3 10 0.00035 24.1 0.9 44 71-119 16-59 (70)
96 2rgt_A Fusion of LIM/homeobox 38.1 0.7 2.4E-05 36.2 -5.8 30 62-91 134-163 (169)
97 1gd2_E Transcription factor PA 37.4 51 0.0018 22.1 4.4 20 145-164 48-67 (70)
98 2wt7_A Proto-oncogene protein 36.5 84 0.0029 20.2 6.0 29 133-161 30-58 (63)
99 1je8_A Nitrate/nitrite respons 36.5 20 0.00068 24.1 2.3 45 71-121 22-66 (82)
100 1iuf_A Centromere ABP1 protein 35.9 22 0.00076 26.7 2.7 50 65-114 6-59 (144)
101 1fse_A GERE; helix-turn-helix 35.9 17 0.00058 23.3 1.8 45 70-120 11-55 (74)
102 3ol1_A Vimentin; structural ge 35.7 82 0.0028 23.0 5.7 43 121-163 64-106 (119)
103 2kvr_A Ubiquitin carboxyl-term 35.6 26 0.00088 26.3 2.9 23 94-116 72-94 (130)
104 1p4w_A RCSB; solution structur 35.2 22 0.00077 25.1 2.4 45 70-120 34-78 (99)
105 3c57_A Two component transcrip 33.4 13 0.00044 25.8 0.9 44 71-120 28-71 (95)
106 3he5_B Synzip2; heterodimeric 31.4 89 0.003 18.9 4.9 21 143-163 27-47 (52)
107 1wlq_A Geminin; coiled-coil; 2 31.2 81 0.0028 21.9 4.6 25 140-164 38-62 (83)
108 2p7v_B Sigma-70, RNA polymeras 31.1 13 0.00046 23.8 0.6 49 71-120 6-54 (68)
109 3m91_A Proteasome-associated A 30.4 1E+02 0.0035 19.3 5.0 30 137-166 20-49 (51)
110 1hjb_A Ccaat/enhancer binding 29.5 1.4E+02 0.0049 20.7 6.4 32 141-172 44-75 (87)
111 1ku3_A Sigma factor SIGA; heli 29.0 19 0.00066 23.4 1.1 47 71-120 11-59 (73)
112 1x3u_A Transcriptional regulat 28.8 23 0.00079 23.0 1.5 45 71-121 17-61 (79)
113 2lv7_A Calcium-binding protein 28.2 30 0.001 24.1 2.1 42 70-111 29-77 (100)
114 3swk_A Vimentin; cytoskeleton, 28.2 75 0.0026 21.9 4.2 40 121-160 44-83 (86)
115 3mzy_A RNA polymerase sigma-H 27.7 19 0.00066 26.4 1.0 43 70-118 109-151 (164)
116 3m48_A General control protein 27.6 90 0.0031 17.8 3.9 24 145-168 5-28 (33)
117 1s7o_A Hypothetical UPF0122 pr 25.5 21 0.00073 25.8 0.9 46 70-120 22-67 (113)
118 1tty_A Sigma-A, RNA polymerase 24.8 23 0.00077 24.0 0.9 48 70-120 18-67 (87)
119 3plu_A Ubiquitin-like modifier 24.4 51 0.0018 23.3 2.7 27 94-120 48-74 (93)
120 3a2a_A Voltage-gated hydrogen 23.3 1.3E+02 0.0043 19.3 4.0 27 143-169 21-47 (58)
121 3lay_A Zinc resistance-associa 21.8 2.3E+02 0.0078 22.2 6.4 15 70-84 67-81 (175)
122 2pmy_A RAS and EF-hand domain- 21.4 14 0.00047 24.9 -0.8 41 71-111 21-66 (91)
123 2rnj_A Response regulator prot 21.0 23 0.0008 24.1 0.3 46 70-121 29-74 (91)
124 1xsv_A Hypothetical UPF0122 pr 20.9 52 0.0018 23.6 2.2 47 70-121 25-71 (113)
125 2qko_A Possible transcriptiona 20.9 17 0.00059 27.9 -0.5 41 76-117 34-74 (215)
126 1gu4_A CAAT/enhancer binding p 20.7 2E+02 0.007 19.4 6.3 25 137-161 47-71 (78)
127 3kyd_D Small ubiquitin-related 20.6 65 0.0022 23.6 2.7 26 94-119 67-92 (115)
128 8tfv_A Protein (thanatin); bac 20.4 31 0.0011 17.2 0.6 14 105-118 3-16 (21)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1e-19 Score=130.73 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=59.9
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHH
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIE 125 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~ 125 (230)
++.+++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 45567788899999999999999999999999999999999999999999999999999987543
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=4.6e-20 Score=129.27 Aligned_cols=63 Identities=29% Similarity=0.514 Sum_probs=58.6
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++++++|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 455667788899999999999999999999999999999999999999999999999999864
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9e-20 Score=127.72 Aligned_cols=63 Identities=30% Similarity=0.449 Sum_probs=58.6
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
++.+++.|+.|+..|+.+||..|..++||+..+++.||..|||++.||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 455667788899999999999999999999999999999999999999999999999999764
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=5.2e-20 Score=125.96 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=52.9
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
+.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 356778889999999999999999999999999999999999999999999999999975
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=8.2e-20 Score=125.40 Aligned_cols=60 Identities=30% Similarity=0.394 Sum_probs=55.2
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
++++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 356778889999999999999999999999999999999999999999999999999975
No 6
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.8e-20 Score=127.57 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=59.1
Q ss_pred CCCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 60 NGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 60 ~~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.++++++.|+.||..|+.+||..|..++||+..+++.||..|||++.||++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3456677888999999999999999999999999999999999999999999999999999753
No 7
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=126.86 Aligned_cols=63 Identities=32% Similarity=0.461 Sum_probs=58.2
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+..+++.|++||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 445567788899999999999999999999999999999999999999999999999999763
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=9.7e-20 Score=127.49 Aligned_cols=64 Identities=25% Similarity=0.418 Sum_probs=59.0
Q ss_pred CCCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 60 NGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 60 ~~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.+++.++.|++|+..|+.+||..|..++||+..+++.||..|||++.||++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3455667788899999999999999999999999999999999999999999999999999763
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=2.2e-19 Score=128.04 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=57.8
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 344566788999999999999999999999999999999999999999999999999998654
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2e-19 Score=129.12 Aligned_cols=64 Identities=25% Similarity=0.414 Sum_probs=59.0
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
+..+++.|+.|+..|+.+||..|..++||+..+++.||..|||++.||++||||||+|+|++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999999999999999999999999999998643
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.8e-19 Score=129.35 Aligned_cols=63 Identities=25% Similarity=0.458 Sum_probs=58.7
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.++++.|++|+..|+.+||..|..++||+..+++.||..|||++++|++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 345667788899999999999999999999999999999999999999999999999999864
No 12
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=129.81 Aligned_cols=61 Identities=31% Similarity=0.373 Sum_probs=56.6
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.++.|+.|+..|+.+||..|..++||+..+++.||..|||+++||++||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3446678899999999999999999999999999999999999999999999999999763
No 13
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-19 Score=128.90 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=56.9
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.++.|+.|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+.+
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4456778899999999999999999999999999999999999999999999999999864
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=1.2e-19 Score=134.03 Aligned_cols=64 Identities=33% Similarity=0.458 Sum_probs=57.9
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHHHH
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEET 127 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~~~ 127 (230)
.++.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+...++.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 3456778999999999999999999999999999999999999999999999999998765443
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-19 Score=126.62 Aligned_cols=63 Identities=17% Similarity=0.375 Sum_probs=58.3
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 345567788899999999999999999999999999999999999999999999999999763
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=1.7e-19 Score=122.94 Aligned_cols=58 Identities=31% Similarity=0.601 Sum_probs=52.9
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567888999999999999999999999999999999999999999999999999986
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=4.7e-19 Score=126.36 Aligned_cols=61 Identities=36% Similarity=0.419 Sum_probs=56.7
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
.++.|+.||..|+.+||..|..++||+..+++.||..|||++.||++||||||+|+|+...
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 4466778999999999999999999999999999999999999999999999999998653
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.8e-19 Score=120.57 Aligned_cols=57 Identities=32% Similarity=0.507 Sum_probs=54.3
Q ss_pred cccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 65 ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356788999999999999999999999999999999999999999999999999986
No 19
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=2.1e-19 Score=129.45 Aligned_cols=61 Identities=34% Similarity=0.507 Sum_probs=54.1
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
..++.|+.||..|+.+||..|..++||+..+++.||..|||++++|++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3456778899999999999999999999999999999999999999999999999999864
No 20
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=4.4e-19 Score=124.87 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=56.0
Q ss_pred ccccccCCCHHHHHHHHHhhcc-CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGN-EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~-~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
|.++|+.|+..|+.+||..|.. ++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 1 G~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3567888999999999999996 99999999999999999999999999999999999864
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=5.5e-19 Score=123.10 Aligned_cols=60 Identities=35% Similarity=0.527 Sum_probs=56.5
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 356778899999999999999999999999999999999999999999999999999864
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=5.2e-19 Score=124.94 Aligned_cols=62 Identities=29% Similarity=0.448 Sum_probs=57.5
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.++++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999999753
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1.9e-19 Score=124.68 Aligned_cols=60 Identities=28% Similarity=0.527 Sum_probs=56.7
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++.|+.||..|+.+||..|..++||+..+++.||..|||++.||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 457788899999999999999999999999999999999999999999999999999764
No 24
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=1.7e-19 Score=125.69 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=57.5
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
++++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999764
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=3.7e-19 Score=120.92 Aligned_cols=58 Identities=36% Similarity=0.540 Sum_probs=54.7
Q ss_pred cccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 65 ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 3567889999999999999999999999999999999999999999999999999975
No 26
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-19 Score=128.67 Aligned_cols=60 Identities=33% Similarity=0.500 Sum_probs=56.1
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.++.|+.||.+|+.+||..|..++||+..+++.||.+|||++.||++||||||+|+|++.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 446677899999999999999999999999999999999999999999999999999864
No 27
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=3.6e-19 Score=128.04 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=55.2
Q ss_pred cccccccCCCHHHHHHHHHhhcc----CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGN----EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~----~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
+.++.|+.||.+|+..||..|.. ++||+..++++||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34567788999999999999999 999999999999999999999999999999999985
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=3.7e-19 Score=124.03 Aligned_cols=60 Identities=33% Similarity=0.465 Sum_probs=56.3
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 356778899999999999999999999999999999999999999999999999999864
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4e-19 Score=127.60 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=56.8
Q ss_pred CcccccccCCCHHHHHHHHHhhccC----CCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNE----HKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~----~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
.+.++.|+.||.+|+.+||..|..+ +||+..++++||.+|||++.||++||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 3455778889999999999999999 999999999999999999999999999999999975
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=7.2e-19 Score=122.07 Aligned_cols=60 Identities=32% Similarity=0.438 Sum_probs=56.5
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 356788899999999999999999999999999999999999999999999999999864
No 31
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.73 E-value=8.2e-19 Score=126.24 Aligned_cols=60 Identities=28% Similarity=0.463 Sum_probs=56.2
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|++.
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 346678899999999999999999999999999999999999999999999999999864
No 32
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.8e-19 Score=125.76 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=54.1
Q ss_pred cccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 67 ~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
+|++||.+|+.+||..|..++||+..++++||..+||+++||++||||||+|+|+..+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 3455999999999999999999999999999999999999999999999999998653
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=7e-19 Score=122.56 Aligned_cols=60 Identities=30% Similarity=0.500 Sum_probs=56.5
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 356778899999999999999999999999999999999999999999999999999864
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=8.9e-19 Score=117.83 Aligned_cols=56 Identities=34% Similarity=0.512 Sum_probs=53.3
Q ss_pred cccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 65 ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46678899999999999999999999999999999999999999999999999986
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.73 E-value=7.8e-19 Score=128.33 Aligned_cols=61 Identities=33% Similarity=0.446 Sum_probs=54.4
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
++.++.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3455777889999999999999999999999999999999999999999999999999975
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-18 Score=123.54 Aligned_cols=62 Identities=32% Similarity=0.480 Sum_probs=57.2
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
++.++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999999999999999763
No 37
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=9e-19 Score=117.47 Aligned_cols=54 Identities=31% Similarity=0.455 Sum_probs=51.0
Q ss_pred cCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 69 RKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 69 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 459999999999999999999999999999999999999999999999999975
No 38
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=7.1e-19 Score=126.48 Aligned_cols=58 Identities=22% Similarity=0.372 Sum_probs=53.8
Q ss_pred cccccccCCCHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGN-----EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
++++.|+.||.+|+..|| .|.. ++||+..++++||.+|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345667889999999999 7999 999999999999999999999999999999999985
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=7.2e-19 Score=119.77 Aligned_cols=58 Identities=33% Similarity=0.559 Sum_probs=48.5
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
+.++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4557788899999999999999999999999999999999999999999999999986
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2e-18 Score=121.92 Aligned_cols=59 Identities=29% Similarity=0.384 Sum_probs=55.1
Q ss_pred cccccCCCHHHHHHHHHhhc-cCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 65 ALKKRKLTAEQAELLEMHFG-NEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F~-~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.++|+.||..|+.+||..|. .++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999 599999999999999999999999999999999999864
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=9.7e-19 Score=118.82 Aligned_cols=57 Identities=33% Similarity=0.532 Sum_probs=50.5
Q ss_pred cccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 67 ~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367799999999999999999999999999999999999999999999999999764
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-18 Score=122.44 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=53.6
Q ss_pred cccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 67 ~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 345599999999999999999999999999999999999999999999999999864
No 43
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.4e-18 Score=129.00 Aligned_cols=62 Identities=29% Similarity=0.351 Sum_probs=56.5
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHH
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIE 125 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~ 125 (230)
++++|++||..|+.+||..|..++||+..+++.||..|||+++||++||||||+|+|+.++.
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34567789999999999999999999999999999999999999999999999999987654
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.9e-18 Score=127.51 Aligned_cols=62 Identities=34% Similarity=0.512 Sum_probs=54.9
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+..++.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34456788899999999999999999999999999999999999999999999999999764
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.3e-18 Score=120.67 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=57.5
Q ss_pred CCcccccccCCCHHHHHHHHHhhcc---CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGN---EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+++.+++|+.|+..|+.+||.+|.. ++||+..+++.||..+||++.||++||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3455677888999999999999976 99999999999999999999999999999999999764
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-18 Score=121.22 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=56.1
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.++.|+.||..|+.+||..|..++||+..+++.||..|||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 346678899999999999999999999999999999999999999999999999999864
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-18 Score=122.35 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=54.5
Q ss_pred ccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 66 LKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 66 r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.|++||..|+.+||..|..++||+..+++.||..|||+++||++||||||+|+|+..
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3467799999999999999999999999999999999999999999999999999864
No 48
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=2.5e-18 Score=118.18 Aligned_cols=58 Identities=28% Similarity=0.466 Sum_probs=55.0
Q ss_pred ccccccCCCHHHHHHHHHhh---ccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHF---GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F---~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
+++.|+.|+..|+.+||..| ..++||+..+++.||..|||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45777889999999999999 89999999999999999999999999999999999986
No 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.4e-18 Score=122.58 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=55.1
Q ss_pred cccccccCCCHHHHHHHHHhh-ccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHF-GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F-~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
.+.+.|++++.+|+.+||..| ..++||+..++++||..|||+++||++||||||+|+|+.
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 345666678899999999999 999999999999999999999999999999999999974
No 50
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=5.9e-18 Score=125.35 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhC---------------CCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELG---------------LDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lg---------------L~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.++++.|+.|+..|+.+||..|..++||+..+++.||..|| |++.+|++||||||+|+|++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 345567788899999999999999999999999999999999 999999999999999999764
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=4.1e-18 Score=120.18 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=56.1
Q ss_pred cccccCCCHHHHHHHHHhh---ccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 65 ALKKRKLTAEQAELLEMHF---GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F---~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
+++|+.|+..|+.+||..| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 4667889999999999999 89999999999999999999999999999999999998654
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.68 E-value=3.9e-19 Score=143.67 Aligned_cols=61 Identities=26% Similarity=0.433 Sum_probs=54.5
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
.+++++|+.|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3556778889999999999999999999999999999999999999999999999999975
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=120.35 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCcccccccCCCHHHHHHHHHhhcc---CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGN---EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.+.+++|+.|+..|+.+|+.+|.. ++||+..+++.||..+||++.||++||||||+|+|+..
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 4455677788999999999999976 69999999999999999999999999999999998754
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=8.5e-18 Score=114.09 Aligned_cols=55 Identities=27% Similarity=0.473 Sum_probs=52.5
Q ss_pred ccCCCHHHHHHHHHhhcc---CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 68 KRKLTAEQAELLEMHFGN---EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 68 r~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
+++|+..|+.+||..|.. ++||+..+++.||..+||++.||++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 567999999999999999 9999999999999999999999999999999999963
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=1.2e-17 Score=121.62 Aligned_cols=61 Identities=28% Similarity=0.426 Sum_probs=56.1
Q ss_pred cccccCCCHHHHHHHHHhh---ccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHH
Q 026974 65 ALKKRKLTAEQAELLEMHF---GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIE 125 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F---~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~ 125 (230)
+++|+.|+..|+.+||.+| ..++||+..+++.||..|||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4667889999999999999 899999999999999999999999999999999999987543
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=7.4e-18 Score=123.37 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
.||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 499999999999999999999999999999999999999999999999999763
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=123.15 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=58.0
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHh---------------------CCCCcceEEecccchhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAEL---------------------GLDPRQVAVWFQNRRARD 119 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~l---------------------gL~~~qV~vWFqNRR~k~ 119 (230)
.++.++.|+.|+..|+.+||..|..++||+..+|++||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45566778889999999999999999999999999999999 799999999999999999
Q ss_pred hhhh
Q 026974 120 KTKK 123 (230)
Q Consensus 120 kr~~ 123 (230)
|++.
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9764
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.66 E-value=1.1e-17 Score=133.20 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=69.2
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHH
Q 026974 17 NKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDK 96 (230)
Q Consensus 17 ~~~~m~~ls~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~ 96 (230)
+..||+.+.+++..|.............. .+...++++.|+.|+..|+.+||..|..++||+..++..
T Consensus 52 s~knm~kLkPlL~~wl~e~e~~~~~~~~~------------~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~ 119 (146)
T 1au7_A 52 SFKNACKLKAILSKWLEEAEQVGALYNEK------------VGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMR 119 (146)
T ss_dssp BHHHHHHHHHHHHHHHHHCCC----------------------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred ChHHHHhcchHHHHHHHHhhcccCccCcc------------cCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44588888888877765543322111100 012234456678899999999999999999999999999
Q ss_pred HHHHhCCCCcceEEecccchhhhhhh
Q 026974 97 LAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 97 La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
||..|||+++||++||||||+|+|++
T Consensus 120 LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 120 MAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhCCChhhchhhhHhhhhhhhcc
Confidence 99999999999999999999999975
No 59
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.9e-17 Score=114.00 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=55.1
Q ss_pred CCcccccccCCCHHHHHHHHHhhcc-CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGN-EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~-~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
...++|.||.|+.+|+.+|+..|+. ++||+...|+.||.+|||++++|++||||||.-.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3456678889999999999999999 99999999999999999999999999999997654
No 60
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.66 E-value=1.2e-18 Score=141.39 Aligned_cols=98 Identities=23% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHH
Q 026974 17 NKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDK 96 (230)
Q Consensus 17 ~~~~m~~ls~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~ 96 (230)
+..||+.+.+++..|..........+...... ....+++++|++|+..|+.+||..|..++||+..++..
T Consensus 62 s~kn~~klkPlL~~wl~eae~~~~~~~~~~~~----------~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~ 131 (164)
T 2xsd_C 62 SFKNMCKLKPLLNKWLEETDSSSGSPTNLDKI----------AAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITG 131 (164)
T ss_dssp BHHHHHHHHHHHHHHHHHHCC---------------------------------CCHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred CHHHHHHcchhHHHHHhhhccccCCCcccccc----------cccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34478888877766654433221111110000 11233456778899999999999999999999999999
Q ss_pred HHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 97 LAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 97 La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
||..|||+++||++||||||+|+|+...
T Consensus 132 LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 132 LADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred HHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 9999999999999999999999998753
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=2.1e-17 Score=113.76 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
-|.+|+.+||..|..++||+..++++||..|||+++||++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999753
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=1.5e-17 Score=120.30 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=55.2
Q ss_pred ccccCCCHHHHHHHHHhhcc---CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHHH
Q 026974 66 LKKRKLTAEQAELLEMHFGN---EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEE 126 (230)
Q Consensus 66 r~r~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~~ 126 (230)
+++++|+..|+.+||.+|.. ++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~ 67 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCH
Confidence 44556999999999999999 99999999999999999999999999999999999875443
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=3.1e-17 Score=119.54 Aligned_cols=57 Identities=26% Similarity=0.486 Sum_probs=53.3
Q ss_pred cccccCCCHHHHHHHHHhhcc---CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 65 ALKKRKLTAEQAELLEMHFGN---EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
+++|++|+..|+.+||.+|.. ++||+..+++.||..+||++.||++||||||+|+|.
T Consensus 28 ~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 28 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345677999999999999999 999999999999999999999999999999999983
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-17 Score=120.42 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
||..|+.+||..|..++||+..+++.||..|||++++|++||||||+|+|+..
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999764
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=2e-17 Score=115.62 Aligned_cols=55 Identities=35% Similarity=0.574 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhH
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKI 124 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~ 124 (230)
.+|..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999998653
No 66
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=2.4e-17 Score=113.26 Aligned_cols=50 Identities=28% Similarity=0.536 Sum_probs=46.6
Q ss_pred HHHHHHHHHhh-ccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhh
Q 026974 73 AEQAELLEMHF-GNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 73 ~~Q~~~Le~~F-~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
..|+.+||..| ..++||+..++.+||.+|||+++||++||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45799999999 679999999999999999999999999999999999964
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=4.7e-17 Score=130.21 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=56.0
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
++++++|+.|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 344567788999999999999999999999999999999999999999999999999986
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-17 Score=111.71 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
..+..|+.+||..|..++||+..++..||..|||++++|++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3679999999999999999999999999999999999999999999999875
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.62 E-value=5.7e-17 Score=120.98 Aligned_cols=61 Identities=20% Similarity=0.371 Sum_probs=53.8
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHH------------------hC---CCCcceEEecccchhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAE------------------LG---LDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~------------------lg---L~~~qV~vWFqNRR~k~kr 121 (230)
+.++.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|++||||||+++|+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 45577888999999999999999999999999999999 88 9999999999999999987
Q ss_pred hh
Q 026974 122 KK 123 (230)
Q Consensus 122 ~~ 123 (230)
+.
T Consensus 88 k~ 89 (99)
T 1lfb_A 88 RH 89 (99)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=1.4e-16 Score=128.02 Aligned_cols=96 Identities=24% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHH
Q 026974 17 NKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDK 96 (230)
Q Consensus 17 ~~~~m~~ls~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~ 96 (230)
+-.||+.+.+++..|...+.......... ......++++++|+.|+..|+..||..|..++||+..++..
T Consensus 59 s~~nm~kLkPlL~~Wl~eae~~~~~~~~~----------~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~ 128 (155)
T 3l1p_A 59 SLKNMSKLRPLLEKWVEEADNNENLQEIS----------KSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITH 128 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHHSS----------CC---CCCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHH
T ss_pred ChhhHhhcchHHHHHhhhhhcccCccccc----------cccccccCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHH
Confidence 34578888888777764433211000000 00001123446678899999999999999999999999999
Q ss_pred HHHHhCCCCcceEEecccchhhhhhh
Q 026974 97 LAAELGLDPRQVAVWFQNRRARDKTK 122 (230)
Q Consensus 97 La~~lgL~~~qV~vWFqNRR~k~kr~ 122 (230)
||..|||+++||++||||||+|+||.
T Consensus 129 LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 129 IANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCChhheeeccccccccccCC
Confidence 99999999999999999999999973
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2e-16 Score=109.85 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhhc---cCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHHHHH
Q 026974 70 KLTAEQAELLEMHFG---NEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETY 128 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~---~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~~~~ 128 (230)
.|+.+|+.+|+.+|. .++||+..+++.||..+||++.||++||||||+|+|+..+++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 499999999999999 99999999999999999999999999999999999988766554
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=2.4e-16 Score=127.58 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCcccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhh
Q 026974 61 GGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKK 123 (230)
Q Consensus 61 ~~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~ 123 (230)
+.++++.|+.|+..|+.+||..|..++||+...++.||..|||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 445678889999999999999999999999999999999999999999999999999999764
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=1.2e-14 Score=120.66 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=53.2
Q ss_pred cccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhC---------------------CCCcceEEecccchhhhhh
Q 026974 63 FRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELG---------------------LDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 63 ~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lg---------------------L~~~qV~vWFqNRR~k~kr 121 (230)
+++|.|+.|+..|+.+||..|..++||+...|++||..|+ |++.+|++||||||+++|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 3456788899999999999999999999999999999999 9999999999999999874
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.1e-14 Score=97.94 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhh
Q 026974 73 AEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRAR 118 (230)
Q Consensus 73 ~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k 118 (230)
.+|+.+|+.+|..+++|+.+++..||..+||+.++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999974
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=100.63 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHhhcc---CCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhhhhHHH
Q 026974 70 KLTAEQAELLEMHFGN---EHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEE 126 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~---~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr~~~~~ 126 (230)
.|+.+++.+|+.+|.. ++||+..++++||.++||++.||++||+|+|.|+++..+++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 4899999999999976 99999999999999999999999999999999999765443
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.29 E-value=4.9e-13 Score=112.38 Aligned_cols=57 Identities=18% Similarity=0.347 Sum_probs=52.4
Q ss_pred ccccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhC---------------------CCCcceEEecccchhhhh
Q 026974 64 RALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELG---------------------LDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 64 ~~r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lg---------------------L~~~qV~vWFqNRR~k~k 120 (230)
.+|.|+.|++.|+.+||..|..++||+..+|++||..|| |++.+|++||||||++..
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 456678899999999999999999999999999999998 899999999999998753
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.24 E-value=7.5e-13 Score=119.46 Aligned_cols=55 Identities=33% Similarity=0.597 Sum_probs=52.1
Q ss_pred ccccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 66 LKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 66 r~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
+-++.++..|+..||+.|..++||+..+|++||.+|||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4466799999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.77 E-value=1.7e-10 Score=70.19 Aligned_cols=22 Identities=41% Similarity=0.857 Sum_probs=19.0
Q ss_pred cceEEecccchhhhhhhhHHHH
Q 026974 106 RQVAVWFQNRRARDKTKKIEET 127 (230)
Q Consensus 106 ~qV~vWFqNRR~k~kr~~~~~~ 127 (230)
+||+|||||||+|||++..+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999876543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.07 E-value=0.0086 Score=40.98 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=36.5
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEeccc
Q 026974 76 AELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQN 114 (230)
Q Consensus 76 ~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqN 114 (230)
.++|+.+|...+.+.....+.|+.+.+|+..||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 468999999999999999999999999999999999954
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=65.65 E-value=21 Score=24.60 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=42.3
Q ss_pred cchhhhhhhhHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 026974 114 NRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSE 168 (230)
Q Consensus 114 NRR~k~kr~~~~~~~~~lk~~~~~~~~~~~~~~~e~~~l~~~~~~~~~e~~~~~~ 168 (230)
+||.+.+-.+...+.+.++...+.+......++.-+.+|+.+...++..++.+..
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777778888888888888778888888888888888887777766544
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.79 E-value=12 Score=26.34 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=11.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 026974 139 VVEKTRLESEVATLKEKLSVAEKEIK 164 (230)
Q Consensus 139 ~~~~~~~~~e~~~l~~~~~~~~~e~~ 164 (230)
..++..|..++..|..++..+...+.
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=58.21 E-value=4.3 Score=29.68 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=34.5
Q ss_pred cccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchh
Q 026974 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRA 117 (230)
Q Consensus 67 ~r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~ 117 (230)
+|+.||.++...+-..+..+..... .+||..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 4566999998776666644444443 25899999999999999866543
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.58 E-value=33 Score=21.98 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHhhhccchhhhhhhHHHHHHHHHHHHHHHH
Q 026974 130 TLKTAHENVVVEKTRLESEVATLKEKLSVAEK 161 (230)
Q Consensus 130 ~lk~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 161 (230)
.+.........++..+..++..|..++..++.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555544
No 84
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.56 E-value=18 Score=25.69 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=23.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026974 138 VVVEKTRLESEVATLKEKLSVAEKEIKKMSELI 170 (230)
Q Consensus 138 ~~~~~~~~~~e~~~l~~~~~~~~~e~~~~~~~~ 170 (230)
...+++.+..+++.|+.++.....+++.+-...
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777888888888888888887665543
No 85
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=54.46 E-value=2.3 Score=27.06 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecc
Q 026974 69 RKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQ 113 (230)
Q Consensus 69 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFq 113 (230)
+.|+.+....+...+.... .......++|.++|++...|..|..
T Consensus 4 ~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4588888766655554332 2111245799999999999999964
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=53.80 E-value=9.5 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=28.0
Q ss_pred cCCCHHHHHHHHHhhccC-CCCCHHHHHHHHHHhCCCCcceEEecc
Q 026974 69 RKLTAEQAELLEMHFGNE-HKLESDRKDKLAAELGLDPRQVAVWFQ 113 (230)
Q Consensus 69 ~~~t~~Q~~~Le~~F~~~-~~p~~~~r~~La~~lgL~~~qV~vWFq 113 (230)
+.|+.++....-..+... .. ....+|..+|++...|..|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 358888775554444322 21 245789999999999999974
No 87
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.00 E-value=9 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=27.5
Q ss_pred ccCCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEec
Q 026974 68 KRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWF 112 (230)
Q Consensus 68 r~~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWF 112 (230)
++.|+.++....-..+... .+ ..++|..+|++...|..|.
T Consensus 20 ~~~ys~e~k~~~v~~~~~g--~s---~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRIHDG--ES---KASVARDIGVPESTLRGWC 59 (87)
T ss_dssp CSSCCHHHHHHHHHHHHHT--CC---HHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCC--CC---HHHHHHHHCcCHHHHHHHH
Confidence 4458888755444455422 12 4478999999999998886
No 88
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.02 E-value=48 Score=21.52 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHHHhhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 026974 129 ATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEI 163 (230)
Q Consensus 129 ~~lk~~~~~~~~~~~~~~~e~~~l~~~~~~~~~e~ 163 (230)
..+.........++..+..++..|..++..++..+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555554443
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=47.84 E-value=6.8 Score=22.69 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEeccc
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQN 114 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqN 114 (230)
.++..+...+...+... .+ ..++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHhh
Confidence 37777765555555432 22 447899999999999888753
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.12 E-value=9.7 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
.++..+..+|...|-... ...+||..||++...|+.+...-|.+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 388888888888664332 2457899999999999877654444433
No 91
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.76 E-value=71 Score=21.78 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026974 146 ESEVATLKEKLSVAEKEIKKM 166 (230)
Q Consensus 146 ~~e~~~l~~~~~~~~~e~~~~ 166 (230)
+.|...|+.++..++.|+..+
T Consensus 49 ~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 49 TAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444
No 92
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=43.42 E-value=3.2 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccc
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNR 115 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNR 115 (230)
++.++...+...+... .+ ..+||..+|++...|..|+...
T Consensus 6 ~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHc
Confidence 5555555444445433 22 4578999999999999998643
No 93
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.83 E-value=48 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=20.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 026974 136 ENVVVEKTRLESEVATLKEKLSVAEKEIKKMSE 168 (230)
Q Consensus 136 ~~~~~~~~~~~~e~~~l~~~~~~~~~e~~~~~~ 168 (230)
..+..++..+..++..+++++..++.+.+.+..
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666677777666666665544
No 94
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=41.75 E-value=44 Score=24.78 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.0
Q ss_pred ccCCCHHHHHHHHHhhc-----cCCCCCHHHHHHHHHHhCCCCc
Q 026974 68 KRKLTAEQAELLEMHFG-----NEHKLESDRKDKLAAELGLDPR 106 (230)
Q Consensus 68 r~~~t~~Q~~~Le~~F~-----~~~~p~~~~r~~La~~lgL~~~ 106 (230)
+..+|.+|+..|...|. .+.+.+..+...+...||+.+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34599999999999996 3668999998888888887654
No 95
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=38.31 E-value=10 Score=24.13 Aligned_cols=44 Identities=20% Similarity=0.035 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARD 119 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~ 119 (230)
+++.+..+|...|-... ...++|..+|++...|+.+...-+.+.
T Consensus 16 L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 78899999988764331 245789999999998887665433333
No 96
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=38.07 E-value=0.7 Score=36.21 Aligned_cols=30 Identities=7% Similarity=-0.161 Sum_probs=21.2
Q ss_pred CcccccccCCCHHHHHHHHHhhccCCCCCH
Q 026974 62 GFRALKKRKLTAEQAELLEMHFGNEHKLES 91 (230)
Q Consensus 62 ~~~~r~r~~~t~~Q~~~Le~~F~~~~~p~~ 91 (230)
.+.++.|+.|+..|++.|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 345677888999999999999999998874
No 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.39 E-value=51 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026974 145 LESEVATLKEKLSVAEKEIK 164 (230)
Q Consensus 145 ~~~e~~~l~~~~~~~~~e~~ 164 (230)
+..|+..|+.++..+..++.
T Consensus 48 l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.54 E-value=84 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=12.6
Q ss_pred hhhccchhhhhhhHHHHHHHHHHHHHHHH
Q 026974 133 TAHENVVVEKTRLESEVATLKEKLSVAEK 161 (230)
Q Consensus 133 ~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 161 (230)
........++..+..++..|..++..++.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 99
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.46 E-value=20 Score=24.09 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
++..+..+|...+.. . ...++|..+|++...|+.+..+-+.|.+.
T Consensus 22 Lt~~e~~vl~l~~~g---~---s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 22 LTPRERDILKLIAQG---L---PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp SCHHHHHHHHHHTTT---C---CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 899999999885422 1 34578999999999998777655555443
No 100
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=35.92 E-value=22 Score=26.70 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=34.9
Q ss_pred cccccCCCHHHHHHHHHhh-ccCCCCCHHHHHHHH-HHh--CCCCcceEEeccc
Q 026974 65 ALKKRKLTAEQAELLEMHF-GNEHKLESDRKDKLA-AEL--GLDPRQVAVWFQN 114 (230)
Q Consensus 65 ~r~r~~~t~~Q~~~Le~~F-~~~~~p~~~~r~~La-~~l--gL~~~qV~vWFqN 114 (230)
+++|.++|.+|...+-..+ ..++..+..+....| .++ +++...|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3566779999999988888 667767665443322 277 6777788777754
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.91 E-value=17 Score=23.26 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
.+++.+..+|...+. .+ ...++|..+|++...|..+...-+.+.+
T Consensus 11 ~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 11 LLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 489999999988532 22 2347899999999988877765444443
No 102
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.69 E-value=82 Score=23.03 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 026974 121 TKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEI 163 (230)
Q Consensus 121 r~~~~~~~~~lk~~~~~~~~~~~~~~~e~~~l~~~~~~~~~e~ 163 (230)
+...+.+...++...+........++.+++.|++++..++...
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888888888888999999999999999887543
No 103
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=35.55 E-value=26 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCcceEEecccch
Q 026974 94 KDKLAAELGLDPRQVAVWFQNRR 116 (230)
Q Consensus 94 r~~La~~lgL~~~qV~vWFqNRR 116 (230)
...+|..+|++..+++.|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 45789999999999999986444
No 104
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.21 E-value=22 Score=25.09 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
.+++.+..+|...+.-- ...+||..||++...|+.+..+-+.|..
T Consensus 34 ~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 34 RLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 39999999998865322 2367999999999999877764444433
No 105
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.41 E-value=13 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
++..+..+|...+..- ...++|..||++...|+.+..+-+.|.+
T Consensus 28 Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 28 LTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 8999999998864332 2357899999999998876654444443
No 106
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.45 E-value=89 Score=18.91 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 026974 143 TRLESEVATLKEKLSVAEKEI 163 (230)
Q Consensus 143 ~~~~~e~~~l~~~~~~~~~e~ 163 (230)
..++.-+..|+++..+++.++
T Consensus 27 qnlekiianlrdeiarlenev 47 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544
No 107
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.22 E-value=81 Score=21.86 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 026974 140 VEKTRLESEVATLKEKLSVAEKEIK 164 (230)
Q Consensus 140 ~~~~~~~~e~~~l~~~~~~~~~e~~ 164 (230)
.+|..+..++..++++...++.+..
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=31.06 E-value=13 Score=23.80 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
+++.+..+|...|....+-. ....++|..+|++...|+.+...-+.+.+
T Consensus 6 L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 78899999998883211111 12357899999999998876654443333
No 109
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.40 E-value=1e+02 Score=19.28 Aligned_cols=30 Identities=10% Similarity=0.351 Sum_probs=19.9
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026974 137 NVVVEKTRLESEVATLKEKLSVAEKEIKKM 166 (230)
Q Consensus 137 ~~~~~~~~~~~e~~~l~~~~~~~~~e~~~~ 166 (230)
.....|..+...+...++++..++++++++
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445566666677777777777777765
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.50 E-value=1.4e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 026974 141 EKTRLESEVATLKEKLSVAEKEIKKMSELIEG 172 (230)
Q Consensus 141 ~~~~~~~e~~~l~~~~~~~~~e~~~~~~~~~~ 172 (230)
....|+.|...|+.++..++.|+..+......
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888888888888777665544
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.00 E-value=19 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHhhccC--CCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 71 LTAEQAELLEMHFGNE--HKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~--~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
+++.+..+|...|-.. .-.+ -.++|..+|++...|+.|...-+.+.+
T Consensus 11 L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7899999999988511 1122 347899999999998876654343333
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.76 E-value=23 Score=23.03 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 71 LTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
+++.+..+|..++. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 78888888887532 11 23478999999999998777655555543
No 113
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=28.25 E-value=30 Score=24.07 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhhc-----cCCCCCHHHHHHHHHHhCC--CCcceEEe
Q 026974 70 KLTAEQAELLEMHFG-----NEHKLESDRKDKLAAELGL--DPRQVAVW 111 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~-----~~~~p~~~~r~~La~~lgL--~~~qV~vW 111 (230)
.++.+++..|...|. .+.+.+..+...+...+|. +..+|+.+
T Consensus 29 ~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l 77 (100)
T 2lv7_A 29 DIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVI 77 (100)
T ss_dssp CCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 388999999999985 4678999999888888885 44444333
No 114
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.20 E-value=75 Score=21.92 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHHHHHH
Q 026974 121 TKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAE 160 (230)
Q Consensus 121 r~~~~~~~~~lk~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 160 (230)
|...+.+...++...+.+...+..++.++..|++++..++
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667888888888888888899999998887765
No 115
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.67 E-value=19 Score=26.36 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRAR 118 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k 118 (230)
.+++.+..+|. .|-... ...++|..||++...|+.+...-|.+
T Consensus 109 ~L~~~~r~v~~-~~~~g~-----s~~EIA~~lgis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGY-----SYREIATILSKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HSCHHHHHHHH-HHTTTC-----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 48888888888 443221 34578999999999998766533333
No 116
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.65 E-value=90 Score=17.77 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 026974 145 LESEVATLKEKLSVAEKEIKKMSE 168 (230)
Q Consensus 145 ~~~e~~~l~~~~~~~~~e~~~~~~ 168 (230)
++..++.|-.++..++.|+.++..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445566666667777777766644
No 117
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.49 E-value=21 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
.+++.+..++...|.... ...++|..+|++...|+.|...-|.+.+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 388999999988754332 2457899999999999988875555544
No 118
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.83 E-value=23 Score=24.03 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHhhccC--CCCCHHHHHHHHHHhCCCCcceEEecccchhhhh
Q 026974 70 KLTAEQAELLEMHFGNE--HKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~--~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
.+++.+..+|...|-.. .-.+ ..+||..+|++...|+.+...-+.+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s---~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKT---LEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 37889999998887511 1122 347899999999999877654444443
No 119
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.39 E-value=51 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCcceEEecccchhhhh
Q 026974 94 KDKLAAELGLDPRQVAVWFQNRRARDK 120 (230)
Q Consensus 94 r~~La~~lgL~~~qV~vWFqNRR~k~k 120 (230)
++.|+.+.|+++.+.+.+|..|-.++-
T Consensus 48 K~~I~~k~Gip~~qQrLif~Gk~LkD~ 74 (93)
T 3plu_A 48 KKVLSLQIGTQPNKIVLQKGGSVLKDH 74 (93)
T ss_dssp HHHHHHHHTCCGGGEEEEETTEECCTT
T ss_pred HHHHHHHhCCCHHHEEEEeCCEEccCc
Confidence 557899999999999999988765543
No 120
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.33 E-value=1.3e+02 Score=19.26 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026974 143 TRLESEVATLKEKLSVAEKEIKKMSEL 169 (230)
Q Consensus 143 ~~~~~e~~~l~~~~~~~~~e~~~~~~~ 169 (230)
..+...++.|+.++.+.++||.++..-
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888887653
No 121
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.82 E-value=2.3e+02 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHhhc
Q 026974 70 KLTAEQAELLEMHFG 84 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~ 84 (230)
-+|++|...+...++
T Consensus 67 nLT~EQq~ql~~I~~ 81 (175)
T 3lay_A 67 PLTTEQQATAQKIYD 81 (175)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 489999988888765
No 122
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.39 E-value=14 Score=24.88 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhhc-----cCCCCCHHHHHHHHHHhCCCCcceEEe
Q 026974 71 LTAEQAELLEMHFG-----NEHKLESDRKDKLAAELGLDPRQVAVW 111 (230)
Q Consensus 71 ~t~~Q~~~Le~~F~-----~~~~p~~~~r~~La~~lgL~~~qV~vW 111 (230)
++..++..|...|. .+.+.+..+...+...+|++...|..+
T Consensus 21 l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~ 66 (91)
T 2pmy_A 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAV 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHH
Confidence 78889999999985 356788888888888888655444333
No 123
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.02 E-value=23 Score=24.10 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
.++..+..+|...+.. + ...++|..+|++...|+.+..+-+.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3889999999885432 1 12368999999999998877655555543
No 124
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.90 E-value=52 Score=23.58 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchhhhhh
Q 026974 70 KLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKT 121 (230)
Q Consensus 70 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~k~kr 121 (230)
.+++.+..+|...|-... ...++|..+|++...|+.+...-|.+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378889899888764332 24578999999999999887655555543
No 125
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=20.87 E-value=17 Score=27.93 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=29.9
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHhCCCCcceEEecccchh
Q 026974 76 AELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRA 117 (230)
Q Consensus 76 ~~~Le~~F~~~~~p~~~~r~~La~~lgL~~~qV~vWFqNRR~ 117 (230)
+......|....|-... ...||+..|++..-+-.+|.+|-.
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcchHHHhCCCHHH
Confidence 44555567766664333 447899999999999999999743
No 126
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.67 E-value=2e+02 Score=19.41 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=14.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHH
Q 026974 137 NVVVEKTRLESEVATLKEKLSVAEK 161 (230)
Q Consensus 137 ~~~~~~~~~~~e~~~l~~~~~~~~~ 161 (230)
.+..++..|..++..|..++..+..
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666655554
No 127
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.62 E-value=65 Score=23.63 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCcceEEecccchhhh
Q 026974 94 KDKLAAELGLDPRQVAVWFQNRRARD 119 (230)
Q Consensus 94 r~~La~~lgL~~~qV~vWFqNRR~k~ 119 (230)
....+.+.|++..+|+.||..+|-..
T Consensus 67 m~aY~er~Gl~~~~irFlFDG~rI~~ 92 (115)
T 3kyd_D 67 KESYCQRQGVPMNSLRFLFEGQRIAD 92 (115)
T ss_dssp HHHHHHHHTCCTTSEEEEETTEECCT
T ss_pred HHHHHHHhCCChhhEEEEECCeECCC
Confidence 34568888999999999999887653
No 128
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=20.42 E-value=31 Score=17.21 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.8
Q ss_pred CcceEEecccchhh
Q 026974 105 PRQVAVWFQNRRAR 118 (230)
Q Consensus 105 ~~qV~vWFqNRR~k 118 (230)
.+.|-+-++|||.-
T Consensus 3 kkpvpiiycnrrtg 16 (21)
T 8tfv_A 3 KKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCEEEEGGGT
T ss_pred CCcccEEEEcCccc
Confidence 45678889999864
Done!