Query 026975
Match_columns 230
No_of_seqs 124 out of 1073
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00182 tatC Sec-independent 100.0 2.4E-65 5.2E-70 442.4 30.1 228 1-230 22-249 (249)
2 PRK10921 twin-arginine protein 100.0 8.4E-65 1.8E-69 441.2 29.7 229 1-230 7-238 (258)
3 TIGR01912 TatC-Arch Twin argin 100.0 3.5E-63 7.6E-68 426.4 29.5 228 3-230 2-237 (237)
4 COG0805 TatC Sec-independent p 100.0 1.1E-62 2.3E-67 424.3 26.4 229 1-230 8-242 (255)
5 TIGR00945 tatC Twin arginine t 100.0 3.4E-61 7.3E-66 409.2 27.1 215 3-218 1-215 (215)
6 PF00902 TatC: Sec-independent 100.0 4.1E-57 8.9E-62 384.2 24.6 209 4-213 1-215 (215)
7 PF09586 YfhO: Bacterial membr 64.1 1.5E+02 0.0033 29.9 13.1 65 63-132 179-243 (843)
8 COG3256 NorB Nitric oxide redu 59.2 98 0.0021 30.7 10.0 106 77-198 393-501 (717)
9 PF07444 Ycf66_N: Ycf66 protei 52.9 80 0.0017 22.9 6.5 33 78-116 21-53 (84)
10 PF06836 DUF1240: Protein of u 40.3 81 0.0017 23.4 5.0 33 71-103 12-44 (95)
11 COG2322 Predicted membrane pro 39.6 2.2E+02 0.0047 23.5 9.4 42 72-114 127-168 (177)
12 PF00902 TatC: Sec-independent 35.3 2.7E+02 0.0058 23.3 10.6 46 139-186 54-99 (215)
13 PLN00174 predicted protein; Pr 34.5 1.1E+02 0.0024 24.9 5.3 30 63-92 72-102 (160)
14 PF03311 Cornichon: Cornichon 32.0 1.2E+02 0.0027 23.5 5.1 29 63-91 66-95 (128)
15 TIGR01006 polys_exp_MPA1 polys 30.9 73 0.0016 26.7 4.0 30 1-30 8-37 (226)
16 KOG2729 ER vesicle integral me 29.2 1.9E+02 0.0041 23.0 5.7 30 63-92 67-97 (137)
17 PF09581 Spore_III_AF: Stage I 27.9 21 0.00045 29.2 0.1 26 174-200 13-38 (188)
18 KOG1304 Amino acid transporter 25.4 6E+02 0.013 24.3 14.3 43 50-92 309-352 (449)
19 TIGR02896 spore_III_AF stage I 21.3 64 0.0014 24.4 1.7 26 174-200 23-48 (106)
20 TIGR03017 EpsF chain length de 20.5 1.5E+02 0.0032 27.5 4.3 29 1-29 1-29 (444)
21 PF15142 INCA1: INCA1 20.3 68 0.0015 25.8 1.7 12 3-14 104-115 (178)
No 1
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=100.00 E-value=2.4e-65 Score=442.37 Aligned_cols=228 Identities=54% Similarity=0.999 Sum_probs=221.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILY 80 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~i~y 80 (230)
||+.||++|||+|++|++++++++++++|++++++++.+.+|.. +.++++|+|+|+|++++|+|++.|+.+++|+++|
T Consensus 22 ~~l~~HL~ELR~Rli~~li~~~i~~~v~~~~~~~l~~~l~~p~~--~~~li~t~~~E~f~~~ikls~~~g~~~a~P~i~y 99 (249)
T CHL00182 22 MPLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK--GIKFLQLSPGEYFFSSIKISFYTGLLISSPFIIY 99 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCceEEcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999874 4469999999999999999999999999999999
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHHHHHHHHH
Q 026975 81 EIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSF 160 (230)
Q Consensus 81 qiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~l~fgl~F 160 (230)
|+|+|++||||+||||..++++..+.++|.+|++|||+.++|.+++|+.+++++++++++|+++|++++.++.+++|++|
T Consensus 100 qiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~~~~~~~i~~Yl~f~~~~~l~fGl~F 179 (249)
T CHL00182 100 QIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVLFFSTGLAF 179 (249)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975 161 QVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230 (230)
Q Consensus 161 ~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~ 230 (230)
|+|+++.++++.|++|+++++|+|||++++++++||++|||||++||+++|+|++++||+|++++|++++
T Consensus 180 elPvi~~~L~~~givs~~~L~~~Rr~~~v~~~i~aAiiTP~pD~~sqi~laiPl~lLYEisI~i~~~~~~ 249 (249)
T CHL00182 180 QIPIIQIVLGLLNIISSKQMLSAWRYVILVSTIVGAILTPSTDPLTQLLLSLAILLLYFSGVIVLKLLKK 249 (249)
T ss_pred HHHHHHHHHHHcCCcCHHHHHhhCchHhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999889999999999999999999999998864
No 2
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=100.00 E-value=8.4e-65 Score=441.22 Aligned_cols=229 Identities=34% Similarity=0.613 Sum_probs=221.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeeecCcChHHHHHHHHHHHHHHHHHHHH
Q 026975 1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV 77 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~---~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~ 77 (230)
||+.||++|||+|+++++++++++++++|++++++++++.+|+.+ ++.++++|+|+|+|++++|+|+++|+++++|+
T Consensus 7 ~~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~l~~~l~~pl~~~~~~~~~li~t~~~e~f~~~lk~sl~~g~~la~P~ 86 (258)
T PRK10921 7 QPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSLILSAPV 86 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeecCchHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999843 35689999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHHHHHH
Q 026975 78 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTG 157 (230)
Q Consensus 78 i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~l~fg 157 (230)
++||+|+|++||||+||||+.++++..+.++|.+|+.|+|++++|.+++|+.+++++++++.+++++|++++.++++++|
T Consensus 87 ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~~~~~~i~~Y~~fv~~~~l~fG 166 (258)
T PRK10921 87 ILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMALFMAFG 166 (258)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975 158 LSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230 (230)
Q Consensus 158 l~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~ 230 (230)
++||+|+++.++++.|++|+++++|+|||++++++++||++|| ||++||+++|+|++++||+|++++++.+|
T Consensus 167 l~FelPli~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiTP-pD~isq~llaiPl~lLYEisI~i~~~~~~ 238 (258)
T PRK10921 167 VSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTP-PDVFSQTLLAIPMYCLFEIGVFFSRFYVG 238 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 79999999999999999999999998654
No 3
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=100.00 E-value=3.5e-63 Score=426.42 Aligned_cols=228 Identities=27% Similarity=0.478 Sum_probs=219.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHhcccccc-----CceeeecCcChHHHHHHHHHHHHHHHHHH
Q 026975 3 IFDHLEELRQRIFVSVLAVGAAILGCF--AYSKELIMFLEAPVKSE-----GVRFLQLAPGEFFFTTLKVSGYCGLLLGS 75 (230)
Q Consensus 3 l~~Hl~ELR~Rl~~~~~~~~~~~~~~~--~~~~~~~~~l~~p~~~~-----~~~~i~~~~~E~f~~~l~~s~~~~~~~~~ 75 (230)
+.||++|||+|++++++++++++++++ ++++++++++.+|+.+. +.++++|+|+|+|.+++|+|++.|+.+++
T Consensus 2 ~~~Hl~ELR~Rli~~~i~~~~~~~~~~~~~~~~~i~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~g~~~~~ 81 (237)
T TIGR01912 2 LLIALATFRLILLLVALAIVTGSVLGWLTIFTPFIIAALRESILPLLAYHVIATLIAPSPFAALELRIKSAFFIGLLLAS 81 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCceeEEcCchHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999 99999999999987542 24799999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhcHHHHHHHHHHHHH
Q 026975 76 PVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAE-GVVESLWSIDQYFEFVLVLMF 154 (230)
Q Consensus 76 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~-~~~~~~~~i~~y~~f~~~~~l 154 (230)
|+++||+|+|++||||+||||..++++..+.++|.+|++++|+.++|.+++|+.++++ +++++.+|++||++++.++++
T Consensus 82 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~f~~~f~~~~~~~~~~~i~~Y~~f~~~~~~ 161 (237)
T TIGR01912 82 PVLAYEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALFAYWVIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKLIL 161 (237)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccceeecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975 468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975 155 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230 (230)
Q Consensus 155 ~fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~ 230 (230)
++|++||+|+++.++++.|++|+++++|+|||++++++++||++|||||++||+++|+|++++||+|++++|+.+|
T Consensus 162 ~fGl~FelPvv~~~L~~~giv~~~~l~~~rr~~~v~~~i~aAiiTP~pD~~sq~~laiPl~~LYeisi~i~~~~~k 237 (237)
T TIGR01912 162 SFGLAFETPVVLVFLTRLGVVSASTLVDYWRVIILVVLVFGAVITPDPDVVSMILLAIPLIALYGLALVISKRVEK 237 (237)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999889999999999999999999999999876
No 4
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-62 Score=424.34 Aligned_cols=229 Identities=38% Similarity=0.701 Sum_probs=220.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcccc-c---cC-ceeeecCcChHHHHHHHHHHHHHHHHHH
Q 026975 1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVK-S---EG-VRFLQLAPGEFFFTTLKVSGYCGLLLGS 75 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~-~---~~-~~~i~~~~~E~f~~~l~~s~~~~~~~~~ 75 (230)
||+.||+.|||+|+.++++++++++..++++.+++.+.+..|+. . ++ .++++|+|+|++.+++|+|++.|+++++
T Consensus 8 ~pl~~hL~eLr~rL~~~~~~~~v~f~~~~~~~~~l~~~l~~p~~~~~l~~~~~~li~~~p~e~~~~~ik~a~~~gl~~a~ 87 (255)
T COG0805 8 QPLIEHLIELRKRLLRILIAFIVAFLILFYFAKDLYELLVAPLTYAQLPEGAVELIATSPTEPFFTYIKLALFAGLLLAL 87 (255)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccceeEEcCcHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999975 2 22 3699999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhcHHHHHHHHHHHHH
Q 026975 76 PVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA-EGVVESLWSIDQYFEFVLVLMF 154 (230)
Q Consensus 76 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~-~~~~~~~~~i~~y~~f~~~~~l 154 (230)
|+++||+|+|++||||+||||..++++..|.+||++|++|+|++++|.+++|+.+++ ++++++..++++|+||++++++
T Consensus 88 P~i~yq~w~FiaPGLy~~Err~~~~~~~~s~~LF~~G~~faYfvv~P~~~~F~~~~~~~~~~~~~~~i~~y~~f~l~l~~ 167 (255)
T COG0805 88 PVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLLGAAFAYFVVFPLVFKFLLSFAAPDGVSPALSISKYLSFVLTLLL 167 (255)
T ss_pred HHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeeeecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 5689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975 155 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230 (230)
Q Consensus 155 ~fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~ 230 (230)
+||++||+|+++.++++.|++|+++++++|||++++++++||++|| ||++||+++|+||++|||+|++++|.++|
T Consensus 168 ~FGv~FElPvv~~~L~~~Giv~~~~L~~~rr~~iv~~fViaaviTP-pd~~sq~llaiPl~lLyElsi~~~r~~~~ 242 (255)
T COG0805 168 AFGVAFELPVVIVLLTRLGIVTPETLKKKRRYAIVAAFVIAAIITP-PDVLSQILLAIPLILLYELSILISRFVEK 242 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCccHHHHHHcCCeeeehHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999999999999 89999999999999999999999999875
No 5
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=100.00 E-value=3.4e-61 Score=409.20 Aligned_cols=215 Identities=57% Similarity=0.957 Sum_probs=209.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 3 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEI 82 (230)
Q Consensus 3 l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~i~yqi 82 (230)
+.||++|||+|++|++++++++++++|++++++++++.+|..+.+.++++|+|+|+|++++|+|++.|+.+++|+++||+
T Consensus 1 l~~Hl~ELR~Rl~~~~i~~~~~~~i~~~~~~~l~~~l~~p~~~~~~~li~t~~~e~f~~~lk~s~~~g~~~~~P~i~yqi 80 (215)
T TIGR00945 1 LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPVLALGVTFIATSPTEPFFTYIKLSLIVGIILSSPVILYQI 80 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEecCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999998766778999999999999999999999999999999999
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 026975 83 IAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQV 162 (230)
Q Consensus 83 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~l~fgl~F~l 162 (230)
|+|++||||+||||+.++++..+..+|..|+++||++++|.+++|+.+++++++++.++++||++++.++++++|++||+
T Consensus 81 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~F~~~~~~~~~~~~~~i~~y~~f~~~~~l~fGl~Fql 160 (215)
T TIGR00945 81 WAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTYGADVVEILLSIDQYFEFVLKLLFSFGVAFQV 160 (215)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026975 163 PVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 218 (230)
Q Consensus 163 Pvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~Ly 218 (230)
|+++.++++.|++|+++++|+|||++++++++||++|| ||++||+++++|++++|
T Consensus 161 Pli~~~l~~~giv~~~~l~~~Rr~~~~~~~i~aa~iTP-pD~~sq~~la~Pl~~LY 215 (215)
T TIGR00945 161 PVLQVLLGRLGIVTYEQLRSKRRYVIVGAFVIGAILTP-PDPLSQILLAIPLLLLY 215 (215)
T ss_pred HHHHHHHHHcCCCCHHHHHhhhHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999 79999999999999987
No 6
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=100.00 E-value=4.1e-57 Score=384.21 Aligned_cols=209 Identities=41% Similarity=0.728 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccC-----ceeeecCcChHHHHHHHHHHHHHHHHHHHHH
Q 026975 4 FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEG-----VRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 78 (230)
Q Consensus 4 ~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~-----~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~i 78 (230)
+||++|||+|++|+++++++++++++++++++++++.+|+.+.. .++++|+|+|++.+++|+|++.|+++++|++
T Consensus 1 ~~Hl~ELr~Rl~~~li~~~i~~~v~~~~~~~l~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~~~~~~~P~~ 80 (215)
T PF00902_consen 1 WEHLEELRYRLIYSLISFIIAFIVCFWFSEELIYFLIKPLPQILPSQNSVKLIFTSPTEAFFTYLKLSFFLGLIISLPYI 80 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccccccceEEECChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999987522 4899999999999999999999999999999
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-hhhhhcHHHHHHHHHHHHHHHH
Q 026975 79 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTG 157 (230)
Q Consensus 79 ~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~-~~~~~~i~~y~~f~~~~~l~fg 157 (230)
+||+|+|++||||+||||+.+++...+.++|.+|+.+||+.++|.+++|+.+++.++ +++++|+++|++++.++.+++|
T Consensus 81 ~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~~~~~~~~i~~y~~f~~~~~~~~g 160 (215)
T PF00902_consen 81 LYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTSGIQPEPSISSYLNFVIQFLLIFG 160 (215)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 4999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 026975 158 LSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAP 213 (230)
Q Consensus 158 l~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~p 213 (230)
++||+|+++..+++.|++|+++++|+|||++++++++||++|| ||++||+++++|
T Consensus 161 l~FqlPli~~~L~~~giv~~~~l~~~rr~~~~~~~iiaa~itP-pD~~sql~l~iP 215 (215)
T PF00902_consen 161 LIFQLPLIMFFLVRLGIVSPKFLRKYRRYAYFGIFIIAAFITP-PDPISQLLLAIP 215 (215)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHhhhHHHHHHHHHHHHhcC-chHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999 899999999987
No 7
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=64.10 E-value=1.5e+02 Score=29.86 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026975 63 LKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA 132 (230)
Q Consensus 63 l~~s~~~~~~~~~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~ 132 (230)
+-.+++.|...+.-..+|-++++.. ++.|+..+.... ..+-.++|+..+=+.++|....++.+-.
T Consensus 179 ~i~nfYf~ym~~if~~iY~~~r~~~----~~~k~~~~~~~~-~~~~~ilg~~lsa~~llP~~~~~l~~~r 243 (843)
T PF09586_consen 179 LISNFYFAYMICIFLVIYFLIRYFF----KNWKNFFKKILR-FIGSSILGVGLSAFLLLPTILSLLQSKR 243 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455666666666667777777652 555555554443 3444667888888889999999887653
No 8
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=59.21 E-value=98 Score=30.72 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=67.3
Q ss_pred HHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHH--
Q 026975 77 VILYEIIAFVLPGLT-RAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLM-- 153 (230)
Q Consensus 77 ~i~yqiw~Fi~PgLy-~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~-- 153 (230)
++..-.|++-+|+.. |.+|+.....+.. .+-..|..++.-. -+. -....++++|..+.+-=.
T Consensus 393 ~~v~Lmfra~~t~~~~~grkt~~i~~~~~--~~~gig~Ff~~~~----------~~~---~~~n~t~dey~rWwvVHlwV 457 (717)
T COG3256 393 VWVALMFRANVTATKLKGRKTTLIAILLL--SLTGIGLFFLFGL----------YNP---EWTNLAVDEYWRWWVVHLWV 457 (717)
T ss_pred HHHHHHHHhcchhhhcCCcchhHHHHHHH--HHHHHHHHHhhhh----------ccC---CCCCchHHHHHHHHHHHHHH
Confidence 455567889899888 4444443333222 2233343333221 111 234678899888776533
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhc
Q 026975 154 FSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVL 198 (230)
Q Consensus 154 l~fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaii 198 (230)
=+|-=++-.|++.+++.++|.++++. ..++-++..+..+++.++
T Consensus 458 EGfwe~i~~~ilafLlv~lg~V~rs~-a~~a~~v~~~l~l~sGii 501 (717)
T COG3256 458 EGFWEVIATAILAFLLVKLGGVDRSV-AEKALYVIAALALFSGII 501 (717)
T ss_pred hhhHHHHHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHHHHHcCcc
Confidence 23444678999999999999999986 556778888888877765
No 9
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=52.87 E-value=80 Score=22.91 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=22.8
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 78 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFS 116 (230)
Q Consensus 78 i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~ 116 (230)
.+| .-++++|.+++++--. ..++.+++.++...
T Consensus 21 ~Ly-~lr~~~Pev~Rd~D~~-----fs~vgLl~g~IL~~ 53 (84)
T PF07444_consen 21 ALY-FLRFFRPEVSRDYDIF-----FSSVGLLYGLILWF 53 (84)
T ss_pred HHH-HHHHHCcchhhhhhHH-----HHHHHHHHHHHHHH
Confidence 344 4599999999998854 35666666665543
No 10
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=40.27 E-value=81 Score=23.41 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 026975 71 LLLGSPVILYEIIAFVLPGLTRAERRFLGPIVL 103 (230)
Q Consensus 71 ~~~~~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~ 103 (230)
.+.++|+..|-....+.-....++.|.-.+..-
T Consensus 12 ~~~~~Pll~Y~~~~~~~~~i~~~~~k~n~~i~~ 44 (95)
T PF06836_consen 12 LIFSSPLLFYFSYLSFFSFIKNKPPKFNNKIVK 44 (95)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCCchhHHHHHH
Confidence 477899999998887766666666555554443
No 11
>COG2322 Predicted membrane protein [Function unknown]
Probab=39.56 E-value=2.2e+02 Score=23.53 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 72 LLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIA 114 (230)
Q Consensus 72 ~~~~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~ 114 (230)
.++.|..+|++|.=.+ +.|++.||..+--...-..-.+.|+.
T Consensus 127 ~i~vPLal~al~~a~~-~~~~rHrki~r~ta~~Wlyva~tGv~ 168 (177)
T COG2322 127 AINVPLALYALILAWK-GLYERHRKIGRWTAPLWLYVALTGVV 168 (177)
T ss_pred HHhhhHHHHHHHHHhc-chhhhhheeeehhhHHHHHHHHHHHH
Confidence 6789999999998764 55888888877666666666666754
No 12
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=35.27 E-value=2.7e+02 Score=23.29 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=33.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhchhH
Q 026975 139 LWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRY 186 (230)
Q Consensus 139 ~~~i~~y~~f~~~~~l~fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~ 186 (230)
..+..|=++.-+++.+..|+..-+|.++.-..+ .+.|..-++.||+
T Consensus 54 ~~~~~e~f~~~lk~s~~~~~~~~~P~~~yq~w~--Fi~PgL~~~Er~~ 99 (215)
T PF00902_consen 54 FTSPTEAFFTYLKLSFFLGLIISLPYILYQIWA--FIAPGLYKHERRF 99 (215)
T ss_pred ECChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcccccHHHHHH
Confidence 346778888888999999999999999887765 3444333344443
No 13
>PLN00174 predicted protein; Provisional
Probab=34.46 E-value=1.1e+02 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-cCCCH
Q 026975 63 LKVSGYCGLLLGSPVILYEIIAFVL-PGLTR 92 (230)
Q Consensus 63 l~~s~~~~~~~~~P~i~yqiw~Fi~-PgLy~ 92 (230)
+-..=+..+.+..|+..|++|++.. |++|+
T Consensus 72 LltG~W~~fLLNlPll~Yhv~~y~~r~hL~D 102 (160)
T PLN00174 72 VIRGWWIVGFLNFPFIFYNFAQWYEGKHQLD 102 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4445577889999999999999865 55554
No 14
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=32.03 E-value=1.2e+02 Score=23.49 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-cCCC
Q 026975 63 LKVSGYCGLLLGSPVILYEIIAFVL-PGLT 91 (230)
Q Consensus 63 l~~s~~~~~~~~~P~i~yqiw~Fi~-PgLy 91 (230)
+-..=+....++.|...|++|++.+ .+++
T Consensus 66 ll~g~w~~~llnlPl~~y~~~~~~~~~~l~ 95 (128)
T PF03311_consen 66 LLTGHWFLFLLNLPLLAYHIYRYFRRQHLY 95 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4455677788899999999999765 3444
No 15
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=30.92 E-value=73 Score=26.71 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026975 1 MSIFDHLEELRQRIFVSVLAVGAAILGCFA 30 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~ 30 (230)
+++.+.++.+|+|...++++.+++...++.
T Consensus 8 i~l~~l~~~l~r~~~~ill~~ll~~~~a~~ 37 (226)
T TIGR01006 8 IDLLQLLKKLWKRKLLILIVALIFLIISFI 37 (226)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999988877777666543
No 16
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=29.23 E-value=1.9e+02 Score=22.97 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-ccCCCH
Q 026975 63 LKVSGYCGLLLGSPVILYEIIAFV-LPGLTR 92 (230)
Q Consensus 63 l~~s~~~~~~~~~P~i~yqiw~Fi-~PgLy~ 92 (230)
+-.+=+..+.++.|...|++|+.. +|.+|+
T Consensus 67 Ll~g~W~~fllnlP~l~y~~~~y~~r~~l~D 97 (137)
T KOG2729|consen 67 LLTGHWFMFLLNLPLLAYNAWLYMKRPHLYD 97 (137)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHcCCcccC
Confidence 444557778899999999999975 465553
No 17
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=27.89 E-value=21 Score=29.19 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=16.0
Q ss_pred CCCHHHHHhchhHHHHHHHHHHHhcCC
Q 026975 174 LVTSDQMLSIWRYVVVGAVIAAAVLTP 200 (230)
Q Consensus 174 iv~~~~l~~~rr~~~~~~~i~aaiitP 200 (230)
+++.+.++||=|. +.|.+++.++++|
T Consensus 13 LlP~~~~kkYvr~-v~GLili~~il~P 38 (188)
T PF09581_consen 13 LLPNSKYKKYVRF-VLGLILILAILSP 38 (188)
T ss_pred hCCchhHHHHHHH-HHHHHHHHHHHHH
Confidence 4544444444443 5667777788888
No 18
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.37 E-value=6e+02 Score=24.25 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=35.1
Q ss_pred eeecC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCH
Q 026975 50 FLQLA-PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTR 92 (230)
Q Consensus 50 ~i~~~-~~E~f~~~l~~s~~~~~~~~~P~i~yqiw~Fi~PgLy~ 92 (230)
-+++| |.|.+...+|+-+.+++.++.|.-.|=...-+.|++.+
T Consensus 309 sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~ 352 (449)
T KOG1304|consen 309 SITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK 352 (449)
T ss_pred eEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence 45555 67899999999999999999999999887777775433
No 19
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=21.26 E-value=64 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=16.1
Q ss_pred CCCHHHHHhchhHHHHHHHHHHHhcCC
Q 026975 174 LVTSDQMLSIWRYVVVGAVIAAAVLTP 200 (230)
Q Consensus 174 iv~~~~l~~~rr~~~~~~~i~aaiitP 200 (230)
+++.+.++||=|. +.|.+++.++++|
T Consensus 23 llP~~~~kkYvr~-v~Gl~Li~~il~P 48 (106)
T TIGR02896 23 LLPNSSLKKYVKF-VVGLILMVVILNP 48 (106)
T ss_pred HCCCccHHHHHHH-HHHHHHHHHHHHH
Confidence 5555555555554 4566667777777
No 20
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.48 E-value=1.5e+02 Score=27.48 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026975 1 MSIFDHLEELRQRIFVSVLAVGAAILGCF 29 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~ 29 (230)
|++.+++.-+|+|-..++.+++++++.+.
T Consensus 1 ~~l~~~l~il~rr~~lil~v~~~~~~~~~ 29 (444)
T TIGR03017 1 MNLIQFLLILKARYWIVLFTLLITVTTTA 29 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998777666655555443
No 21
>PF15142 INCA1: INCA1
Probab=20.26 E-value=68 Score=25.81 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHH
Q 026975 3 IFDHLEELRQRI 14 (230)
Q Consensus 3 l~~Hl~ELR~Rl 14 (230)
...|||+||+|=
T Consensus 104 VtyHLEDLRRRQ 115 (178)
T PF15142_consen 104 VTYHLEDLRRRQ 115 (178)
T ss_pred HHHHHHHHHHHH
Confidence 368999999884
Done!