Query 026975
Match_columns 230
No_of_seqs 124 out of 1073
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 100.0 4.1E-66 1.4E-70 446.1 21.3 227 1-230 1-232 (249)
2 2l0e_A Sodium/hydrogen exchang 65.8 2.1 7.3E-05 24.6 1.0 18 192-210 7-24 (33)
3 3twe_A Alpha4H; unknown functi 14.9 1.1E+02 0.0038 16.0 2.0 11 4-14 14-24 (27)
4 2k1e_A Water soluble analogue 9.4 4.4E+02 0.015 17.9 4.5 13 92-104 3-15 (103)
5 3n00_B N-COR1, N-COR, nuclear 8.6 1.2E+02 0.0039 15.5 0.7 14 197-211 4-17 (21)
6 3h3g_B Parathyroid hormone-rel 8.0 2.1E+02 0.007 15.0 1.6 9 7-15 4-12 (24)
7 1rh5_B Preprotein translocase 5.5 7.1E+02 0.024 16.5 4.0 37 81-118 18-54 (74)
8 1wrg_A LH-1, light-harvesting 5.5 6.1E+02 0.021 15.9 3.1 30 89-118 10-39 (55)
9 1y96_B Gemin7, SIP3, GEM-assoc 5.4 3.7E+02 0.013 18.5 2.2 14 8-21 14-27 (85)
10 1et1_A Parathyroid hormone; he 5.1 3.4E+02 0.011 15.5 1.6 11 4-14 12-22 (34)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=100.00 E-value=4.1e-66 Score=446.14 Aligned_cols=227 Identities=34% Similarity=0.605 Sum_probs=214.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeeecCcChHHHHHHHHHHHHHHHHHHHH
Q 026975 1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV 77 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~---~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~ 77 (230)
||+.||++|||+|++++++++++++++++++++++++++.+|..+ ++ ++++|+|+|+|.+++|+|++.|+++++|+
T Consensus 1 m~l~~HL~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~~P~~~~~~~~-~li~t~~~e~f~~~lkvs~~~g~~~a~P~ 79 (249)
T 4b4a_A 1 MPLTEHLRELRYRLIISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEV-ELITLSPTEPLFILIKISLAVGFIIASPV 79 (249)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTS-CEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-CeeecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999863 23 89999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh--cHHHHHHHHHHHHHH
Q 026975 78 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLW--SIDQYFEFVLVLMFS 155 (230)
Q Consensus 78 i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~--~i~~y~~f~~~~~l~ 155 (230)
++||+|+|++||||+||||+..+++..+..+|..|++|||++++|.+++|+.+++++++++++ ++++|++++.++.++
T Consensus 80 ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~ 159 (249)
T 4b4a_A 80 ILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVA 159 (249)
T ss_dssp HHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888888 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975 156 TGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230 (230)
Q Consensus 156 fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~ 230 (230)
+|++||+|+++.++++.|++|+++++|+|||++++++++||++|| |++||+++|+|+++|||+|++++|+++|
T Consensus 160 fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP--D~~sq~llaiPl~lLYEisi~i~~~~~~ 232 (249)
T 4b4a_A 160 FGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVLMAIPLLLLYEISIFLGKLATR 232 (249)
T ss_dssp HHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999998764
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=65.84 E-value=2.1 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.552 Sum_probs=14.2
Q ss_pred HHHHHhcCCCCCHHHHHHH
Q 026975 192 VIAAAVLTPSTDPVTQMLL 210 (230)
Q Consensus 192 ~i~aaiitP~pD~~sqi~l 210 (230)
+++||+++| +|+++.+-+
T Consensus 7 llfGAiis~-TDpVavlai 24 (33)
T 2l0e_A 7 LLFGSIISA-VDPVAVLAV 24 (33)
T ss_dssp CTTHHHHTT-CCHHHHHHH
T ss_pred HHHHHHccC-CChHHHHHH
Confidence 467999999 599887654
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=14.92 E-value=1.1e+02 Score=16.02 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 026975 4 FDHLEELRQRI 14 (230)
Q Consensus 4 ~~Hl~ELR~Rl 14 (230)
.|.++.||+++
T Consensus 14 qerlrklrkkl 24 (27)
T 3twe_A 14 QERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44455555543
No 4
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=9.37 E-value=4.4e+02 Score=17.89 Aligned_cols=13 Identities=15% Similarity=-0.225 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 026975 92 RAERRFLGPIVLG 104 (230)
Q Consensus 92 ~~Er~~~~~~~~~ 104 (230)
++||+........
T Consensus 3 ~~~r~~l~~~~~~ 15 (103)
T 2k1e_A 3 DHEREAQKAEEEL 15 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5788876655443
No 5
>3n00_B N-COR1, N-COR, nuclear receptor corepressor 1; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=8.59 E-value=1.2e+02 Score=15.51 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=9.1
Q ss_pred hcCCCCCHHHHHHHH
Q 026975 197 VLTPSTDPVTQMLLA 211 (230)
Q Consensus 197 iitP~pD~~sqi~la 211 (230)
.+|| +|-+++++.+
T Consensus 4 ~vt~-~~~i~eVitq 17 (21)
T 3n00_B 4 LITL-ADHICQIITQ 17 (26)
T ss_pred eeec-HHHHHHHHHH
Confidence 4577 5777777653
No 6
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=7.97 E-value=2.1e+02 Score=15.04 Aligned_cols=9 Identities=44% Similarity=1.114 Sum_probs=6.2
Q ss_pred HHHHHHHHH
Q 026975 7 LEELRQRIF 15 (230)
Q Consensus 7 l~ELR~Rl~ 15 (230)
++|+|+|..
T Consensus 4 ~Q~~rRr~w 12 (24)
T 3h3g_B 4 IQDLRRRFF 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567888753
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=5.54 E-value=7.1e+02 Score=16.48 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 81 EIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYW 118 (230)
Q Consensus 81 qiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~ 118 (230)
+..++++-+-.|+.+.+.+-.-..+.+.++.| ++||.
T Consensus 18 d~~rvlk~~~KPdr~EF~~iak~~~iG~~imG-~IGfi 54 (74)
T 1rh5_B 18 ECRRVWLVLKKPTKDEYLAVAKVTALGISLLG-IIGYI 54 (74)
T ss_dssp HHHHHHHSEECCCHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44556666666666655555555555556666 34544
No 8
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=5.47 E-value=6.1e+02 Score=15.91 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 89 GLTRAERRFLGPIVLGSSVLFYAGIAFSYW 118 (230)
Q Consensus 89 gLy~~Er~~~~~~~~~~~~lF~~G~~f~y~ 118 (230)
||.+.|-|=+-+.+..++..|..-+.++..
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~ 39 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHL 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888887777777777777665555554
No 9
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=5.36 E-value=3.7e+02 Score=18.53 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 026975 8 EELRQRIFVSVLAV 21 (230)
Q Consensus 8 ~ELR~Rl~~~~~~~ 21 (230)
.+||.|.++.+.+.
T Consensus 14 a~LReRfLr~l~~m 27 (85)
T 1y96_B 14 AALRERYLRSLLAM 27 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 48999999988763
No 10
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=5.12 E-value=3.4e+02 Score=15.45 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q 026975 4 FDHLEELRQRI 14 (230)
Q Consensus 4 ~~Hl~ELR~Rl 14 (230)
.+|++++|+|.
T Consensus 12 gr~~q~~~R~~ 22 (34)
T 1et1_A 12 GKHLNSMERVE 22 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47888888874
Done!