Query 026975
Match_columns 230
No_of_seqs 124 out of 1073
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 04:30:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026975.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026975hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lghb_ f.3.1.1 (B:) Light-har 17.2 87 0.0063 17.5 5.3 33 88-120 4-36 (43)
2 d1jo5a_ f.3.1.1 (A:) Light-har 10.4 89 0.0065 17.8 2.4 33 88-120 9-41 (48)
3 d1v54l_ f.23.6.1 (L:) Mitochon 8.5 1.7E+02 0.012 16.4 3.0 27 141-167 13-39 (46)
4 d1ppjd2 f.23.11.1 (D:196-241) 7.8 1.9E+02 0.014 16.0 4.4 34 6-39 2-35 (46)
5 d1rh5b_ f.23.28.1 (B:) Preprot 7.3 2.3E+02 0.017 16.4 5.5 41 79-120 5-45 (56)
6 d1ng7a_ a.178.1.1 (A:) Soluble 7.3 91 0.0066 18.6 1.5 13 199-211 16-28 (60)
7 d1xmea1 f.24.1.1 (A:14-562) Ba 6.9 1.4E+02 0.011 25.4 3.4 28 91-119 2-29 (549)
8 d1z0jb1 a.2.19.1 (B:734-784) F 5.6 2E+02 0.015 15.9 2.4 13 3-15 32-44 (51)
9 d1vrga1 c.14.1.4 (A:1-251) Pro 4.8 2E+02 0.015 21.5 2.8 18 1-18 1-18 (251)
10 d1r5la1 a.5.3.1 (A:25-90) Alph 4.3 1.6E+02 0.012 17.3 1.4 8 7-14 4-11 (66)
No 1
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=17.16 E-value=87 Score=17.46 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 88 PGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120 (230)
Q Consensus 88 PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~v 120 (230)
.||.+.|-+=+-+...-+...|..-+.++...+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLv 36 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLV 36 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999888888888888988877776543
No 2
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.39 E-value=89 Score=17.84 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=26.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 88 PGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120 (230)
Q Consensus 88 PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~v 120 (230)
.||.+.|-+=+-+...-+...|...+..+...+
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~ 41 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAV 41 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999988888888888888888877776543
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.52 E-value=1.7e+02 Score=16.37 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 141 SIDQYFEFVLVLMFSTGLSFQVPVIQL 167 (230)
Q Consensus 141 ~i~~y~~f~~~~~l~fgl~F~lPvi~~ 167 (230)
++++=-.....+++.||..|-.|.+++
T Consensus 13 sv~Nk~rLla~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 13 SVENKWRLLAMMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccccchHHHH
Confidence 444555566778889999999998765
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.84 E-value=1.9e+02 Score=16.00 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 026975 6 HLEELRQRIFVSVLAVGAAILGCFAYSKELIMFL 39 (230)
Q Consensus 6 Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l 39 (230)
|.+|=++-.+++++.+.+..+.+|+.....+.-+
T Consensus 2 e~d~RK~mG~Kv~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 2 EHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3455455556666666677777777766665554
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.34 E-value=2.3e+02 Score=16.44 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=25.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 79 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120 (230)
Q Consensus 79 ~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~v 120 (230)
+-|..+.++-+-.|+-+.+.+-....+.+.++.| +.+|.+-
T Consensus 5 ~~es~Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~G-~IGf~I~ 45 (56)
T d1rh5b_ 5 IEECRRVWLVLKKPTKDEYLAVAKVTALGISLLG-IIGYIIH 45 (56)
T ss_dssp HHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3466777776666665556555566666667777 3455443
No 6
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=7.28 E-value=91 Score=18.59 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHH
Q 026975 199 TPSTDPVTQMLLA 211 (230)
Q Consensus 199 tP~pD~~sqi~la 211 (230)
||+||.++.++-+
T Consensus 16 tPpP~aI~DLLkS 28 (60)
T d1ng7a_ 16 SPPPECINDLLQA 28 (60)
T ss_dssp CCSSTTTHHHHHH
T ss_pred CCCChHHHHHHHh
Confidence 6888998887654
No 7
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=6.87 E-value=1.4e+02 Score=25.35 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975 91 TRAERRFLGPIVLGSSVLFYAGIAFSYWV 119 (230)
Q Consensus 91 y~~Er~~~~~~~~~~~~lF~~G~~f~y~~ 119 (230)
|+ |||..+.++..++..++.|..++-..
T Consensus 2 ~p-~k~i~~~yl~~a~~~lliG~~~gll~ 29 (549)
T d1xmea1 2 YP-EKKATLYFLVLGFLALIVGSLFGPFQ 29 (549)
T ss_dssp CT-HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 89999999999999999998888544
No 8
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=2e+02 Score=15.94 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHH
Q 026975 3 IFDHLEELRQRIF 15 (230)
Q Consensus 3 l~~Hl~ELR~Rl~ 15 (230)
+.|.++||+..+-
T Consensus 32 ltenl~elk~tl~ 44 (51)
T d1z0jb1 32 LTENLRELKHTLA 44 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678888887654
No 9
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Probab=4.82 E-value=2e+02 Score=21.49 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHHHH
Q 026975 1 MSIFDHLEELRQRIFVSV 18 (230)
Q Consensus 1 m~l~~Hl~ELR~Rl~~~~ 18 (230)
||+.|-++|||.|.-++-
T Consensus 1 m~~~~~i~~l~~~~~~~~ 18 (251)
T d1vrga1 1 MSLRDKIEELKKIEKEIE 18 (251)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 788888888888876664
No 10
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.30 E-value=1.6e+02 Score=17.35 Aligned_cols=8 Identities=50% Similarity=0.754 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 026975 7 LEELRQRI 14 (230)
Q Consensus 7 l~ELR~Rl 14 (230)
|+|||+++
T Consensus 4 L~elR~~l 11 (66)
T d1r5la1 4 LAALRRRA 11 (66)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555543
Done!