BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026976
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 156 LRVSLMRLLAETE--GCDGEEKAGNDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLN 212
+R L L T G +++G+ + C +CM K A +PC H C C++E+ L
Sbjct: 274 VRYELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQ 333
Query: 213 RGSCPLCNRSILEILDI 229
CP+C + I E+L+I
Sbjct: 334 SNKCPICRQPIEELLEI 350
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLC 219
C +C K + PCGH+FC +C R+ CPLC
Sbjct: 32 CHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLC 69
>sp|Q6R7C4|IAP4_OSHVF Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF106 PE=4 SV=1
Length = 465
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 182 CCVCMGRKKGAAFIPCGHTF-CRVCSREM---WLNRGSCPLCNRSILEILDIF 230
C C RK AFIPCGH F C +C+ EM + + CP+C + ++ IF
Sbjct: 405 CKACYERKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEKVQKIF 457
>sp|Q96EH8|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo sapiens GN=NEURL3 PE=2
SV=2
Length = 262
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 147 PTGTKRGTPLRVSLM-RLLAETEGCDGEEKAGNDSMCCVCMGRKKGAAFIPCGHT-FCRV 204
PT ++ TP+ L + + E + GEE C +C +PCGHT FCR
Sbjct: 173 PTASRLPTPMPWDLSNKAVPEPKATPGEE-------CAICFYHAANTRLVPCGHTYFCRY 225
Query: 205 CSREMWLNRGSCPLCNRSI 223
C+ ++ + CP+C I
Sbjct: 226 CAWRVFSDTAKCPVCRWQI 244
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLC 219
C +C K PCGHTFC +C R N CPLC
Sbjct: 27 CHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLC 64
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMW----LNRGSCPLCNR 221
A +D C +C G A +PCGH+FCR C +W R +CP C +
Sbjct: 15 AEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQ 64
>sp|P10862|RAD18_YEAST Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RAD18 PE=1 SV=1
Length = 487
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLC 219
C +C K PCGHTFC +C R N+ +CPLC
Sbjct: 28 CHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLC 65
>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana
GN=XBAT35 PE=2 SV=1
Length = 462
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 131 TNPAGPTVINND---HNVGPTGTKR--GTPLRV-SLMRLLAETEGCDGEEKAGNDSMCCV 184
++P+ P + ++D + GP TP+ + S L A TEG E+ GN C +
Sbjct: 356 SSPSAPPLTDDDIATVDDGPIHYPSIDSTPVDLPSAASLPASTEGERKED--GNTGTCAI 413
Query: 185 CMGRKKGAAFIPCGHTF-CRVCSREMWLNRGSCPLCNRSILEILDIF 230
C+ A +PCGH C C +E+ CP+C I +++ ++
Sbjct: 414 CLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLY 460
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2
Length = 438
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 144 NVGPTGTKRGTPLRVSLMRLLAETEGCDGEEKAGNDSMCCVCMGRKKGAAFIPCGHTF-C 202
+V PT R V + + G + +C +C G + AF+PCGH C
Sbjct: 353 SVAPTAATRIFNKIVEATAVATPSTNSSGSTSIPEEKLCKICYGAEYNTAFLPCGHVVAC 412
Query: 203 RVCSREMWLNRGSCPLCNRSILEILDIF 230
C+ + CPLC + +++ ++
Sbjct: 413 AKCASSV----TKCPLCRKPFTDVMRVY 436
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLN-RGSCPLCNRSILE 225
C +C+GR + +PCGH+FC C ++ W + SCP C + E
Sbjct: 13 CSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPE 57
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1
SV=1
Length = 1314
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILD 228
+ +C +C A F PCGH C+ C + +N C C +I+ + D
Sbjct: 1251 EDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVSVED 1300
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123
PE=1 SV=1
Length = 1318
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILD 228
+ +C +C A F PCGH C+ C + +N C C +I+ + D
Sbjct: 1255 EDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVED 1304
>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2
SV=1
Length = 1314
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILD 228
+ +C +C A F PCGH C+ C + +N C C +I+ + D
Sbjct: 1251 EDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVED 1300
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 182 CCVCMGRKKGAA-FIPCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227
CC+C+ GAA +PC H FC C R R +CPLC + ++
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSLI 59
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 182 CCVCMGRKKGAA-FIPCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227
CC+C+ GAA +PC H FC C R R +CPLC + ++
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSLI 59
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR--------GSCPLCNR 221
D C +C G +PCGH+FC C +++W+++ +CP+C +
Sbjct: 17 EDLSCIICQGLLDWPTTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRK 68
>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2
SV=2
Length = 1280
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227
D+ CC+C + A PC H C C LN C CN ++++++
Sbjct: 1214 DNTCCICYAGEANAMIAPCSHRSCYGCITRHLLNCQRCFFCNATVIDVI 1262
>sp|Q4WDD7|BRE1_ASPFU E3 ubiquitin-protein ligase bre1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bre1
PE=3 SV=2
Length = 725
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 180 SMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRS 222
++C VC K A CGH FC+ C E +R CP CNRS
Sbjct: 671 ALCTVCRRNFKNTAIKTCGHVFCKECVEERLTSRSRKCPNCNRS 714
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 173 EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSI 223
EE A N+ C +C + A +PCGH F C R WL + SCP C S+
Sbjct: 332 EELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRS-WLEQDTSCPTCRMSL 382
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 173 EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSI 223
EE A N+ C +C + A +PCGH F C R WL + SCP C S+
Sbjct: 332 EELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRS-WLEQDTSCPTCRMSL 382
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 180 SMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRS 222
++C VC K A CGH FC+ C E +R CP CNRS
Sbjct: 706 ALCTVCRRNFKNTAIKTCGHVFCKDCVEERLTSRSRKCPNCNRS 749
>sp|Q9CWS1|RN135_MOUSE E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2
SV=1
Length = 417
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR--------GSCPLCNRSIL 224
+D C +C G +PCGH+FC C ++W+++ +CP+C + L
Sbjct: 17 DDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICRKGPL 71
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 133 PAGPTVINND--HNVGPTGTKRGTPLRVSLMRLLAETEGCDGEEKAGNDSMCCVCMGRKK 190
P P V+ + N T GT L V M L D +C +CM K
Sbjct: 8 PLVPAVVKPEPSKNFSTDTTAAGTFLLVPTMSDL------------DKDFLCPICMQIIK 55
Query: 191 GAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 223
A CGH+FC +C N+ CP C +
Sbjct: 56 DAFLTACGHSFCYMCIITHLRNKSDCPCCGHYL 88
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 223
D +C +CM K A CGH+FC +C N+ CP C++ +
Sbjct: 49 DLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHL 93
>sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65 OS=Homo sapiens GN=TRIM65
PE=2 SV=3
Length = 517
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSI 223
C +C+G + +PCGH FC C R+ W G +CP C
Sbjct: 12 CAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPF 54
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 174 EKAGNDSM--CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGS-CPLC 219
E A DS+ C +C + CGHTFC +C RE +LN+ S CPLC
Sbjct: 22 ELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIRE-YLNKESRCPLC 69
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 174 EKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCN 220
E ND +C +C + A CGH+FC C + + CP CN
Sbjct: 130 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCN 176
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%)
Query: 165 AETEGCDGEEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224
+ETE G D C +CM PCGHTFC C + CPLC +
Sbjct: 432 SETEESQGLSLDVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLS 491
Query: 225 EIL 227
E+L
Sbjct: 492 ELL 494
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 174 EKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCN 220
E ND +C +C + A CGH+FC C + + CP CN
Sbjct: 128 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCN 174
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGS--CPLCNRSI 223
C +C+ K + CGH FCR C ++W + S CP C SI
Sbjct: 146 CPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESI 189
>sp|Q5A4X0|BRE1_CANAL E3 ubiquitin-protein ligase BRE1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=BRE1 PE=3 SV=1
Length = 681
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR-GSCPLCNR 221
C VC K A CGH FC C++E R CP CNR
Sbjct: 629 CSVCSKNWKDTAITVCGHVFCSKCTQERLAARLRRCPSCNR 669
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 40.0 bits (92), Expect = 0.014, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLC 219
C +C+G + A I CGH FC+ C CP+C
Sbjct: 1239 CSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSKCPIC 1276
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 182 CCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDI 229
C +C+ K A +PC H C C+ E+ CP+C + I E++ I
Sbjct: 321 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKI 369
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225
C +C K C HTFC C RE + CPLC E
Sbjct: 36 CYICKEFLKAPVITSCNHTFCSHCIREYLIVNSHCPLCKAEQFE 79
>sp|Q6CWM4|BRE1_KLULA E3 ubiquitin-protein ligase BRE1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=BRE1 PE=3 SV=1
Length = 663
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 181 MCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR-GSCPLCNR 221
C +C K A CGH FC VC +E R CP CN+
Sbjct: 610 YCSLCSKNWKNTALKTCGHVFCDVCCKERLAARMRKCPTCNK 651
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 178 NDSMCCVCM-GRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSI 223
++ CC+CM GR +PC H+FC+ C + W +R SCP+C R +
Sbjct: 151 DEDECCICMDGRVD--LILPCAHSFCQKCI-DKWSDRHRSCPVCRRQV 195
>sp|Q6R797|Y118_OSHVF Putative RING finger protein ORF118 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF118 PE=4 SV=1
Length = 222
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCN 220
D CC+CM + +PC H CR C + R +CP+CN
Sbjct: 75 DEECCICMAKNNRKEALPCQHNVCRDCYYKPM--RNNCPVCN 114
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 146 GPTGTKRGTPLRVSLMRLLAETEGCDGEEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVC 205
GP+G LR L+R + +G+D C +C+ C H FC+ C
Sbjct: 730 GPSGNDTPEELRKKLIRKMKLIL------SSGSDEECAICLDSLTVPVITHCAHVFCKPC 783
Query: 206 SREMWLNR---GSCPLCNRSILE 225
++ N CPLC I E
Sbjct: 784 ICQVIQNEQPHAKCPLCRNDIHE 806
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 160 LMRLLAETEGCDGEEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLC 219
L R L+ G E + +C +C+ ++ PCGH FC C ++ CPLC
Sbjct: 251 LHRGLSHRRGSLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLC 310
Query: 220 N 220
Sbjct: 311 R 311
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR--GSCPLCNRSILE 225
+ GN C +C+ PC H CR C W + G CP+C R+IL+
Sbjct: 1033 RDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPIC-RTILK 1084
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMW--LNRG-SCPLCNRS 222
++ C VC+ K I CGH FC+ C W L R CP+C ++
Sbjct: 26 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMW--LNRG-SCPLCNRS 222
++ C VC+ K I CGH FC+ C W L R CP+C ++
Sbjct: 26 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMW--LNRG-SCPLCNRS 222
++ C VC+ K I CGH FC+ C W L R CP+C ++
Sbjct: 26 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMW--LNRG-SCPLCNRS 222
++ C VC+ K I CGH FC+ C W L R CP+C ++
Sbjct: 26 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 155 PLRVSLMRLLAETEGCDGEEKAGNDSM----CCVCM-----GRKKGAAFIPCGHTFCRVC 205
P + + R + E D E ND + C +C +K A +PCGH F + C
Sbjct: 78 PFQPPVKRAVKE--AWDSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNC 135
Query: 206 SREMWLNRGSCPLCNRSI 223
++ N +CPLC + +
Sbjct: 136 LQKWLENHCTCPLCRKEV 153
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGS---CPLCNRSILEI 226
C VC+ K PCGH FC C E W+ +G CP C R + ++
Sbjct: 13 CSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQC-RKVYQV 59
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGS--CPLCNRSI 223
C +C+ K + CGH FCR C + W + S CP C SI
Sbjct: 145 CPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESI 188
>sp|Q95M71|BIRC8_GORGO Baculoviral IAP repeat-containing protein 8 OS=Gorilla gorilla
gorilla GN=BIRC8 PE=2 SV=1
Length = 236
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 179 DSMCCVCMGRKKGAAFIPCGHTF-CRVCSREMWLNRGSCPLCNRSI 223
+ +C +CM R FIPCGH C+ C+ + CP+CN I
Sbjct: 186 EKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV----DRCPMCNAVI 227
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCS---REMWLNRGSCPLCNRSI 223
C +C+ + I CGH FCR C+ R + NR CPLC +
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPF 60
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 182 CCVCMGRKKGAAFIPCGHTFCRVCS---REMWLNRGSCPLCNRSI 223
C +C+ + I CGH FCR C+ R + NR CPLC +
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPF 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,920,555
Number of Sequences: 539616
Number of extensions: 3475432
Number of successful extensions: 10721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 10388
Number of HSP's gapped (non-prelim): 721
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)