Query 026976
Match_columns 230
No_of_seqs 194 out of 1884
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13920 zf-C3HC4_3: Zinc fing 99.2 2E-11 4.3E-16 82.4 2.9 48 179-226 2-50 (50)
2 PF15227 zf-C3HC4_4: zinc fing 99.1 2.5E-11 5.4E-16 79.7 3.1 38 182-219 1-42 (42)
3 PLN03208 E3 ubiquitin-protein 99.1 7.9E-11 1.7E-15 100.6 4.0 50 176-225 15-80 (193)
4 KOG0823 Predicted E3 ubiquitin 99.0 1.2E-10 2.6E-15 101.4 3.1 54 177-230 45-103 (230)
5 KOG0320 Predicted E3 ubiquitin 99.0 1.7E-10 3.8E-15 96.9 2.9 53 178-230 130-186 (187)
6 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.1E-10 4.6E-15 73.6 2.6 38 182-219 1-39 (39)
7 PF13639 zf-RING_2: Ring finge 98.9 2.9E-10 6.3E-15 74.6 1.8 40 181-220 2-44 (44)
8 smart00504 Ubox Modified RING 98.9 1E-09 2.2E-14 76.5 4.0 46 179-224 1-46 (63)
9 KOG0317 Predicted E3 ubiquitin 98.9 4.8E-10 1E-14 100.4 2.9 50 176-225 236-285 (293)
10 PHA02929 N1R/p28-like protein; 98.9 7.4E-10 1.6E-14 97.7 4.1 52 177-228 172-231 (238)
11 TIGR00599 rad18 DNA repair pro 98.8 2.4E-09 5.1E-14 100.6 3.3 51 175-225 22-72 (397)
12 PF00097 zf-C3HC4: Zinc finger 98.8 4.5E-09 9.7E-14 67.6 2.7 38 182-219 1-41 (41)
13 cd00162 RING RING-finger (Real 98.7 9.6E-09 2.1E-13 65.5 3.4 43 181-223 1-45 (45)
14 KOG4172 Predicted E3 ubiquitin 98.7 2E-09 4.4E-14 74.2 -0.5 52 179-230 7-60 (62)
15 smart00184 RING Ring finger. E 98.6 2.9E-08 6.3E-13 61.1 3.3 38 182-219 1-39 (39)
16 KOG0287 Postreplication repair 98.6 6.2E-09 1.3E-13 95.2 0.2 48 178-225 22-69 (442)
17 PHA02926 zinc finger-like prot 98.6 3.5E-08 7.6E-13 85.9 3.0 52 176-227 167-233 (242)
18 PF14634 zf-RING_5: zinc-RING 98.6 4.7E-08 1E-12 64.3 2.8 41 181-221 1-44 (44)
19 PF13445 zf-RING_UBOX: RING-ty 98.5 4.3E-08 9.3E-13 64.8 1.9 35 182-217 1-43 (43)
20 COG5432 RAD18 RING-finger-cont 98.5 3.5E-08 7.7E-13 88.8 1.8 48 178-225 24-71 (391)
21 PF04564 U-box: U-box domain; 98.5 6.4E-08 1.4E-12 70.4 2.8 48 178-225 3-51 (73)
22 KOG4265 Predicted E3 ubiquitin 98.5 6.1E-08 1.3E-12 89.2 2.8 54 177-230 288-342 (349)
23 KOG2164 Predicted E3 ubiquitin 98.5 6.1E-08 1.3E-12 92.6 2.5 47 179-225 186-237 (513)
24 PF12678 zf-rbx1: RING-H2 zinc 98.4 1.5E-07 3.4E-12 68.6 3.4 41 180-220 20-73 (73)
25 KOG2177 Predicted E3 ubiquitin 98.4 6.6E-08 1.4E-12 82.6 1.2 45 176-220 10-54 (386)
26 COG5574 PEX10 RING-finger-cont 98.4 1.3E-07 2.9E-12 83.9 2.3 46 178-223 214-261 (271)
27 KOG0978 E3 ubiquitin ligase in 98.4 6.6E-08 1.4E-12 95.9 0.3 55 176-230 640-697 (698)
28 KOG4275 Predicted E3 ubiquitin 98.4 4.5E-08 9.7E-13 88.1 -0.9 48 179-230 300-348 (350)
29 KOG4628 Predicted E3 ubiquitin 98.3 2.5E-07 5.4E-12 85.5 2.6 47 180-226 230-280 (348)
30 COG5540 RING-finger-containing 98.2 6.8E-07 1.5E-11 81.0 2.7 47 178-224 322-372 (374)
31 COG5243 HRD1 HRD ubiquitin lig 98.2 9.1E-07 2E-11 82.1 2.7 48 176-223 284-344 (491)
32 PF14835 zf-RING_6: zf-RING of 98.0 5.5E-07 1.2E-11 64.2 -1.3 44 178-223 6-50 (65)
33 KOG4159 Predicted E3 ubiquitin 98.0 2.5E-06 5.5E-11 80.4 2.4 50 176-225 81-130 (398)
34 KOG0802 E3 ubiquitin ligase [P 98.0 2E-06 4.3E-11 84.0 1.7 47 177-223 289-340 (543)
35 KOG0311 Predicted E3 ubiquitin 97.9 1.3E-06 2.9E-11 80.4 -2.1 50 176-225 40-91 (381)
36 KOG2660 Locus-specific chromos 97.8 5.2E-06 1.1E-10 75.9 0.6 51 176-226 12-63 (331)
37 KOG1571 Predicted E3 ubiquitin 97.8 7.3E-06 1.6E-10 75.7 1.2 51 177-230 303-353 (355)
38 PF12861 zf-Apc11: Anaphase-pr 97.6 3.9E-05 8.6E-10 57.7 3.1 30 195-224 50-82 (85)
39 KOG0297 TNF receptor-associate 97.5 4.8E-05 1E-09 71.7 2.0 52 176-227 18-70 (391)
40 KOG1785 Tyrosine kinase negati 97.4 6.2E-05 1.3E-09 70.7 1.4 47 181-227 371-419 (563)
41 COG5152 Uncharacterized conser 97.3 6.4E-05 1.4E-09 64.8 0.8 46 178-223 195-240 (259)
42 KOG1813 Predicted E3 ubiquitin 97.2 9.2E-05 2E-09 67.0 0.8 48 179-226 241-288 (313)
43 KOG2879 Predicted E3 ubiquitin 97.2 0.00024 5.3E-09 63.8 3.2 49 176-224 236-287 (298)
44 KOG1039 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 67.2 2.1 51 177-227 159-224 (344)
45 KOG4692 Predicted E3 ubiquitin 97.1 0.00026 5.6E-09 65.8 2.1 50 177-226 420-469 (489)
46 PF11789 zf-Nse: Zinc-finger o 97.0 0.00049 1.1E-08 48.0 2.6 41 178-218 10-53 (57)
47 KOG0826 Predicted E3 ubiquitin 97.0 0.00044 9.6E-09 63.5 2.7 55 176-230 297-354 (357)
48 PF11793 FANCL_C: FANCL C-term 97.0 0.0002 4.4E-09 51.8 0.1 47 179-225 2-67 (70)
49 KOG0804 Cytoplasmic Zn-finger 96.9 0.00036 7.7E-09 66.4 1.3 46 176-223 172-221 (493)
50 KOG0828 Predicted E3 ubiquitin 96.9 0.00044 9.5E-09 66.6 1.6 50 176-225 568-635 (636)
51 COG5222 Uncharacterized conser 96.8 0.0005 1.1E-08 62.7 1.4 43 179-221 274-318 (427)
52 KOG1002 Nucleotide excision re 96.8 0.0004 8.6E-09 67.4 0.5 46 178-223 535-585 (791)
53 smart00744 RINGv The RING-vari 96.7 0.0014 3.1E-08 44.2 2.7 40 181-220 1-49 (49)
54 KOG0825 PHD Zn-finger protein 96.6 0.00035 7.5E-09 70.3 -1.0 50 178-227 122-174 (1134)
55 KOG1734 Predicted RING-contain 96.5 0.00094 2E-08 60.1 0.7 46 178-223 223-280 (328)
56 COG5194 APC11 Component of SCF 96.4 0.0029 6.3E-08 47.1 2.9 29 196-224 53-81 (88)
57 COG5219 Uncharacterized conser 96.4 0.0011 2.3E-08 68.2 0.5 53 173-225 1463-1524(1525)
58 PF14570 zf-RING_4: RING/Ubox 96.2 0.003 6.6E-08 42.7 2.0 42 182-223 1-47 (48)
59 KOG3039 Uncharacterized conser 96.0 0.0046 1E-07 55.1 2.8 49 177-225 219-271 (303)
60 PF14447 Prok-RING_4: Prokaryo 95.9 0.0033 7.1E-08 43.6 1.1 46 178-225 6-51 (55)
61 KOG1100 Predicted E3 ubiquitin 95.6 0.0047 1E-07 53.7 0.9 45 182-230 161-206 (207)
62 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.013 2.9E-07 52.2 3.3 49 176-225 110-162 (260)
63 KOG2930 SCF ubiquitin ligase, 95.4 0.0075 1.6E-07 47.0 1.5 27 196-222 80-106 (114)
64 KOG1001 Helicase-like transcri 95.4 0.0059 1.3E-07 61.5 1.1 45 180-225 455-501 (674)
65 KOG2932 E3 ubiquitin ligase in 95.4 0.0053 1.1E-07 56.3 0.6 45 181-227 92-137 (389)
66 KOG1814 Predicted E3 ubiquitin 95.4 0.0065 1.4E-07 57.5 1.2 45 176-220 181-236 (445)
67 KOG1493 Anaphase-promoting com 95.1 0.0083 1.8E-07 44.4 0.8 29 196-224 50-81 (84)
68 COG5236 Uncharacterized conser 95.0 0.021 4.4E-07 53.3 3.2 49 177-225 59-109 (493)
69 PF05290 Baculo_IE-1: Baculovi 95.0 0.014 3E-07 47.5 1.8 49 178-226 79-134 (140)
70 KOG3002 Zn finger protein [Gen 94.7 0.018 3.8E-07 52.8 2.1 45 178-226 47-93 (299)
71 PF10367 Vps39_2: Vacuolar sor 93.6 0.03 6.4E-07 42.3 0.9 32 176-207 75-108 (109)
72 KOG3579 Predicted E3 ubiquitin 93.5 0.074 1.6E-06 48.4 3.5 37 177-213 266-306 (352)
73 KOG1941 Acetylcholine receptor 93.3 0.025 5.4E-07 53.5 0.1 47 178-224 364-416 (518)
74 KOG2114 Vacuolar assembly/sort 92.5 0.062 1.3E-06 55.0 1.7 50 176-228 837-887 (933)
75 KOG2817 Predicted E3 ubiquitin 92.3 0.11 2.3E-06 49.1 2.9 47 176-222 331-383 (394)
76 KOG4445 Uncharacterized conser 91.4 0.048 1E-06 50.0 -0.5 48 178-225 114-187 (368)
77 COG5175 MOT2 Transcriptional r 90.5 0.15 3.2E-06 47.7 1.7 44 181-224 16-64 (480)
78 KOG1428 Inhibitor of type V ad 90.2 0.18 3.8E-06 54.7 2.3 51 176-226 3483-3546(3738)
79 PHA03096 p28-like protein; Pro 90.0 0.15 3.2E-06 46.5 1.4 41 180-220 179-230 (284)
80 PF03854 zf-P11: P-11 zinc fin 89.9 0.13 2.8E-06 34.8 0.6 44 182-227 5-49 (50)
81 PF08746 zf-RING-like: RING-li 89.9 0.33 7.2E-06 31.8 2.6 38 182-219 1-43 (43)
82 KOG1952 Transcription factor N 89.7 0.2 4.4E-06 51.4 2.2 50 177-226 189-249 (950)
83 KOG4362 Transcriptional regula 88.9 0.09 1.9E-06 52.9 -1.0 47 178-224 20-69 (684)
84 COG5220 TFB3 Cdk activating ki 88.6 0.16 3.5E-06 45.3 0.6 46 178-223 9-63 (314)
85 KOG3970 Predicted E3 ubiquitin 88.6 0.32 6.9E-06 43.1 2.3 46 179-224 50-105 (299)
86 KOG3161 Predicted E3 ubiquitin 88.5 0.12 2.5E-06 51.8 -0.5 39 177-217 9-51 (861)
87 PHA02862 5L protein; Provision 88.2 0.44 9.5E-06 39.4 2.8 43 180-223 3-52 (156)
88 PHA02825 LAP/PHD finger-like p 87.7 0.61 1.3E-05 39.1 3.4 46 177-223 6-58 (162)
89 KOG4185 Predicted E3 ubiquitin 87.3 0.35 7.7E-06 43.3 1.9 33 190-222 20-53 (296)
90 KOG1940 Zn-finger protein [Gen 85.7 0.26 5.6E-06 44.7 0.1 45 180-225 159-207 (276)
91 KOG3268 Predicted E3 ubiquitin 85.4 0.49 1.1E-05 40.6 1.7 46 180-225 166-229 (234)
92 PF05883 Baculo_RING: Baculovi 84.9 0.57 1.2E-05 38.2 1.8 35 179-213 26-69 (134)
93 PF02891 zf-MIZ: MIZ/SP-RING z 83.8 1.6 3.4E-05 29.4 3.3 42 180-222 3-50 (50)
94 COG5109 Uncharacterized conser 82.9 0.85 1.9E-05 42.3 2.2 54 176-229 333-394 (396)
95 KOG3039 Uncharacterized conser 82.0 1 2.2E-05 40.5 2.3 37 176-212 40-76 (303)
96 KOG1645 RING-finger-containing 81.0 1 2.2E-05 43.1 2.0 31 192-222 22-54 (463)
97 PF10272 Tmpp129: Putative tra 80.6 3.1 6.7E-05 39.2 5.1 49 176-224 268-351 (358)
98 KOG0298 DEAD box-containing he 80.3 0.44 9.6E-06 51.0 -0.6 45 178-222 1152-1197(1394)
99 PF04216 FdhE: Protein involve 79.5 0.87 1.9E-05 41.1 1.1 52 175-226 168-224 (290)
100 PF12906 RINGv: RING-variant d 79.0 0.84 1.8E-05 30.3 0.6 38 182-219 1-47 (47)
101 KOG1815 Predicted E3 ubiquitin 78.8 1.1 2.4E-05 42.9 1.7 35 178-212 69-104 (444)
102 COG5183 SSM4 Protein involved 76.4 1.8 3.8E-05 44.8 2.3 52 178-230 11-71 (1175)
103 KOG1812 Predicted E3 ubiquitin 75.6 1.3 2.9E-05 41.9 1.2 35 178-212 145-183 (384)
104 KOG2034 Vacuolar sorting prote 70.6 2.2 4.8E-05 44.3 1.4 36 176-211 814-851 (911)
105 KOG2113 Predicted RNA binding 69.7 4.5 9.8E-05 37.6 3.1 52 176-229 340-392 (394)
106 PF10235 Cript: Microtubule-as 69.0 2.5 5.4E-05 32.2 1.1 39 179-226 44-82 (90)
107 KOG3899 Uncharacterized conser 65.1 3.2 7E-05 38.2 1.2 27 197-223 325-364 (381)
108 KOG2068 MOT2 transcription fac 63.3 5.5 0.00012 37.0 2.4 47 179-225 249-299 (327)
109 KOG0825 PHD Zn-finger protein 62.5 3.6 7.8E-05 42.5 1.1 51 176-226 93-156 (1134)
110 PRK03564 formate dehydrogenase 60.8 7 0.00015 36.1 2.6 46 176-221 184-234 (309)
111 KOG3113 Uncharacterized conser 60.0 7.7 0.00017 35.0 2.6 48 176-225 108-159 (293)
112 TIGR01562 FdhE formate dehydro 55.7 7.8 0.00017 35.7 2.0 46 177-222 182-233 (305)
113 PF06906 DUF1272: Protein of u 55.3 9.6 0.00021 26.6 1.9 42 181-224 7-52 (57)
114 PF11494 Ta0938: Ta0938; Inte 53.1 5.6 0.00012 30.8 0.5 14 47-60 10-25 (105)
115 KOG0824 Predicted E3 ubiquitin 51.0 4.5 9.7E-05 37.3 -0.3 50 177-226 103-153 (324)
116 COG3813 Uncharacterized protei 49.6 11 0.00023 27.9 1.5 24 198-223 28-51 (84)
117 KOG0269 WD40 repeat-containing 49.0 16 0.00035 37.6 3.2 39 180-218 780-820 (839)
118 KOG0309 Conserved WD40 repeat- 48.0 10 0.00022 39.3 1.5 24 195-218 1046-1069(1081)
119 PF07191 zinc-ribbons_6: zinc- 48.0 1.4 3E-05 32.1 -3.3 42 180-226 2-43 (70)
120 PF06844 DUF1244: Protein of u 47.1 11 0.00024 27.2 1.2 13 200-212 11-23 (68)
121 KOG1812 Predicted E3 ubiquitin 46.7 11 0.00023 35.8 1.5 41 179-219 306-351 (384)
122 PF08853 DUF1823: Domain of un 46.7 7.4 0.00016 30.9 0.3 13 40-52 78-90 (116)
123 KOG3053 Uncharacterized conser 45.9 9.8 0.00021 34.5 1.0 48 177-224 18-82 (293)
124 KOG3799 Rab3 effector RIM1 and 44.7 5.9 0.00013 32.6 -0.5 44 176-222 62-116 (169)
125 PF07975 C1_4: TFIIH C1-like d 42.5 15 0.00033 25.0 1.3 23 196-220 26-50 (51)
126 PF14446 Prok-RING_1: Prokaryo 42.0 29 0.00063 24.0 2.6 40 179-222 5-50 (54)
127 PF04710 Pellino: Pellino; In 41.5 8.8 0.00019 36.7 0.0 29 193-224 305-339 (416)
128 PF13240 zinc_ribbon_2: zinc-r 39.9 5.1 0.00011 22.7 -1.1 21 202-222 2-22 (23)
129 KOG3842 Adaptor protein Pellin 38.6 29 0.00063 32.5 2.9 46 177-223 339-413 (429)
130 TIGR01911 HesB_rel_seleno HesB 36.7 12 0.00027 28.1 0.2 20 45-64 28-47 (92)
131 KOG3842 Adaptor protein Pellin 36.6 28 0.0006 32.7 2.4 42 179-223 290-351 (429)
132 KOG4451 Uncharacterized conser 35.2 84 0.0018 28.2 5.1 23 201-223 251-273 (286)
133 KOG4718 Non-SMC (structural ma 34.4 21 0.00046 31.5 1.2 43 178-220 180-223 (235)
134 PF14569 zf-UDP: Zinc-binding 34.2 46 0.001 24.8 2.8 48 178-225 8-63 (80)
135 COG4647 AcxC Acetone carboxyla 33.4 22 0.00047 29.2 1.1 22 183-204 61-82 (165)
136 KOG2807 RNA polymerase II tran 31.9 29 0.00063 32.5 1.8 42 179-220 330-374 (378)
137 PF09723 Zn-ribbon_8: Zinc rib 31.2 11 0.00024 24.3 -0.8 30 196-226 10-40 (42)
138 PF01363 FYVE: FYVE zinc finge 31.0 13 0.00029 25.8 -0.5 32 178-209 8-43 (69)
139 PF04423 Rad50_zn_hook: Rad50 30.4 18 0.00039 24.3 0.1 11 215-225 22-32 (54)
140 cd00065 FYVE FYVE domain; Zinc 30.0 32 0.0007 22.7 1.4 32 180-211 3-38 (57)
141 PLN02189 cellulose synthase 30.0 43 0.00093 35.9 2.8 47 179-225 34-88 (1040)
142 PF10497 zf-4CXXC_R1: Zinc-fin 29.2 45 0.00098 25.8 2.2 43 179-221 7-69 (105)
143 KOG2113 Predicted RNA binding 29.2 18 0.0004 33.7 0.0 51 178-228 135-187 (394)
144 KOG1609 Protein involved in mR 27.3 46 0.00099 29.5 2.2 47 178-224 77-134 (323)
145 smart00064 FYVE Protein presen 27.0 42 0.0009 23.1 1.5 33 179-211 10-46 (68)
146 PF09297 zf-NADH-PPase: NADH p 27.0 8.7 0.00019 23.1 -1.7 23 199-221 3-29 (32)
147 smart00647 IBR In Between Ring 26.8 12 0.00025 25.2 -1.3 17 193-209 41-58 (64)
148 KOG4185 Predicted E3 ubiquitin 26.3 19 0.00041 32.1 -0.4 44 179-222 207-265 (296)
149 PF10083 DUF2321: Uncharacteri 25.2 34 0.00074 28.7 0.9 25 198-225 27-51 (158)
150 PF05605 zf-Di19: Drought indu 25.2 27 0.00059 23.3 0.3 39 179-224 2-42 (54)
151 COG4306 Uncharacterized protei 24.7 35 0.00076 27.8 0.9 24 199-225 28-51 (160)
152 PF10146 zf-C4H2: Zinc finger- 24.3 48 0.001 29.3 1.7 23 201-223 196-218 (230)
153 KOG1829 Uncharacterized conser 24.2 24 0.00052 35.4 -0.2 22 196-220 536-557 (580)
154 PF02980 FokI_C: Restriction e 23.6 56 0.0012 26.9 1.9 45 2-52 1-46 (142)
155 COG0068 HypF Hydrogenase matur 23.3 40 0.00086 34.7 1.2 21 202-222 154-182 (750)
156 PF14353 CpXC: CpXC protein 22.8 93 0.002 24.2 3.0 44 180-223 2-48 (128)
157 TIGR00622 ssl1 transcription f 22.7 78 0.0017 25.1 2.5 41 180-220 56-110 (112)
158 PF13248 zf-ribbon_3: zinc-rib 22.7 16 0.00036 21.0 -1.0 7 215-221 18-24 (26)
159 KOG0827 Predicted E3 ubiquitin 22.5 23 0.00049 34.0 -0.7 45 181-225 198-246 (465)
160 COG3492 Uncharacterized protei 22.5 40 0.00087 25.9 0.8 13 200-212 42-54 (104)
161 KOG3476 Microtubule-associated 22.3 13 0.00028 28.4 -1.9 39 179-226 54-92 (100)
162 KOG3463 Transcription initiati 21.3 48 0.001 26.1 1.0 60 3-64 11-78 (109)
163 smart00290 ZnF_UBP Ubiquitin C 20.5 71 0.0015 20.5 1.6 25 181-205 1-25 (50)
No 1
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.16 E-value=2e-11 Score=82.43 Aligned_cols=48 Identities=29% Similarity=0.951 Sum_probs=42.7
Q ss_pred CCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
+..|.||++...+.+++||||. ||..|+.+|+.....||+||++|.++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4679999999999999999999 99999999999888999999998764
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=2.5e-11 Score=79.68 Aligned_cols=38 Identities=42% Similarity=1.183 Sum_probs=31.4
Q ss_pred ccccCCCccccEEeccCCcccHhhHHHHHhCCC----CCccc
Q 026976 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG----SCPLC 219 (230)
Q Consensus 182 C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~----~CP~C 219 (230)
|+||++++.+|+.++|||+||..|+.+++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998653 69987
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=7.9e-11 Score=100.56 Aligned_cols=50 Identities=28% Similarity=0.765 Sum_probs=43.3
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC----------------CCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN----------------RGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~----------------~~~CP~CR~~i~~ 225 (230)
....+.|+||++.+.+|++++|||.||+.|+..|+.. ...||+||..|..
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3467899999999999999999999999999999752 2389999998854
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-10 Score=101.38 Aligned_cols=54 Identities=26% Similarity=0.703 Sum_probs=46.6
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC---CCccccccc--ccccccC
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG---SCPLCNRSI--LEILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~---~CP~CR~~i--~~il~If 230 (230)
...+.|.||++..++||++.|||.||+.||.+|++.+. .||+|+..| .+++.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 35788999999999999999999999999999999654 889999765 5566665
No 5
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-10 Score=96.93 Aligned_cols=53 Identities=26% Similarity=0.733 Sum_probs=45.0
Q ss_pred CCCcccccCCCcccc--EEeccCCcccHhhHHHHHhCCCCCccccccc--ccccccC
Q 026976 178 NDSMCCVCMGRKKGA--AFIPCGHTFCRVCSREMWLNRGSCPLCNRSI--LEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p--v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i--~~il~If 230 (230)
..+.|+|||+.+.+. +.+.|||+||..|++..++....||+|++.| +++.+||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 458899999987654 4578999999999999999999999999766 5666776
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.00 E-value=2.1e-10 Score=73.62 Aligned_cols=38 Identities=32% Similarity=1.043 Sum_probs=33.7
Q ss_pred ccccCCCcccc-EEeccCCcccHhhHHHHHhCCCCCccc
Q 026976 182 CCVCMGRKKGA-AFIPCGHTFCRVCSREMWLNRGSCPLC 219 (230)
Q Consensus 182 C~ICl~~~~~p-v~lpCGH~FC~~Cl~~~l~~~~~CP~C 219 (230)
|+||++.+.++ +.++|||+||..|+.+|+.....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 678999999999999999997799987
No 7
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.95 E-value=2.9e-10 Score=74.64 Aligned_cols=40 Identities=35% Similarity=0.909 Sum_probs=35.2
Q ss_pred cccccCCCcc---ccEEeccCCcccHhhHHHHHhCCCCCcccc
Q 026976 181 MCCVCMGRKK---GAAFIPCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 181 ~C~ICl~~~~---~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
.|+||++.+. ..+.++|||.||..|+.+|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999874 467889999999999999999999999997
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.93 E-value=1e-09 Score=76.53 Aligned_cols=46 Identities=20% Similarity=0.471 Sum_probs=42.6
Q ss_pred CCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
++.|+||.+.+.+|+.++|||+||+.|+..|+.....||+|+..+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3679999999999999999999999999999998889999998873
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.8e-10 Score=100.38 Aligned_cols=50 Identities=28% Similarity=0.794 Sum_probs=45.7
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
......|.+|++...+|..+||||.||+.||..|......||+||..+..
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 45668999999999999999999999999999999999999999988743
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.93 E-value=7.4e-10 Score=97.71 Aligned_cols=52 Identities=23% Similarity=0.719 Sum_probs=44.2
Q ss_pred CCCCcccccCCCcccc--------EEeccCCcccHhhHHHHHhCCCCCcccccccccccc
Q 026976 177 GNDSMCCVCMGRKKGA--------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILD 228 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p--------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il~ 228 (230)
..+..|+||++.+.++ +..+|+|.||..|+.+|+.....||+||..+..+++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 3567899999976542 455799999999999999988899999999988764
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=2.4e-09 Score=100.64 Aligned_cols=51 Identities=29% Similarity=0.654 Sum_probs=46.2
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.+...+.|+||++.+.+|++++|||.||..|+..|+.....||+|+..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456788999999999999999999999999999999988899999988754
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.77 E-value=4.5e-09 Score=67.64 Aligned_cols=38 Identities=39% Similarity=1.079 Sum_probs=34.5
Q ss_pred ccccCCCccccE-EeccCCcccHhhHHHHHh--CCCCCccc
Q 026976 182 CCVCMGRKKGAA-FIPCGHTFCRVCSREMWL--NRGSCPLC 219 (230)
Q Consensus 182 C~ICl~~~~~pv-~lpCGH~FC~~Cl~~~l~--~~~~CP~C 219 (230)
|+||++.+.+++ +++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 889999999999999999 44499987
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=9.6e-09 Score=65.52 Aligned_cols=43 Identities=33% Similarity=0.935 Sum_probs=36.9
Q ss_pred cccccCCCccccEEec-cCCcccHhhHHHHHhC-CCCCccccccc
Q 026976 181 MCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLN-RGSCPLCNRSI 223 (230)
Q Consensus 181 ~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~-~~~CP~CR~~i 223 (230)
.|+||++.+.+++.++ |||.||..|+..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999987776666 9999999999999987 56899998754
No 14
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2e-09 Score=74.24 Aligned_cols=52 Identities=23% Similarity=0.770 Sum_probs=47.1
Q ss_pred CCcccccCCCccccEEeccCCc-ccHhhHHHHHh-CCCCCcccccccccccccC
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWL-NRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~-~~~~CP~CR~~i~~il~If 230 (230)
..+|.||++...+.|..-|||. +|+.|..+.++ .++.||+||++|+++++.|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 4789999999999999999998 89999888777 5669999999999999987
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.64 E-value=2.9e-08 Score=61.10 Aligned_cols=38 Identities=42% Similarity=1.175 Sum_probs=34.3
Q ss_pred ccccCCCccccEEeccCCcccHhhHHHHHh-CCCCCccc
Q 026976 182 CCVCMGRKKGAAFIPCGHTFCRVCSREMWL-NRGSCPLC 219 (230)
Q Consensus 182 C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~-~~~~CP~C 219 (230)
|+||++...+++.++|||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999988 44589987
No 16
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.63 E-value=6.2e-09 Score=95.25 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=44.8
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
..+.|.||+++|.-|+.+||+|+||..||..++..+..||.|+..+.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 467899999999999999999999999999999999999999988754
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.56 E-value=3.5e-08 Score=85.92 Aligned_cols=52 Identities=23% Similarity=0.618 Sum_probs=41.1
Q ss_pred cCCCCcccccCCCccc---------cEEeccCCcccHhhHHHHHhCC------CCCccccccccccc
Q 026976 176 AGNDSMCCVCMGRKKG---------AAFIPCGHTFCRVCSREMWLNR------GSCPLCNRSILEIL 227 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~---------pv~lpCGH~FC~~Cl~~~l~~~------~~CP~CR~~i~~il 227 (230)
...+.+|+||++...+ .+..+|+|.||..|+..|...+ ..||+||..+..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3467899999997532 3455899999999999998753 26999999887664
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.56 E-value=4.7e-08 Score=64.34 Aligned_cols=41 Identities=27% Similarity=0.896 Sum_probs=34.5
Q ss_pred cccccCCCc---cccEEeccCCcccHhhHHHHHhCCCCCccccc
Q 026976 181 MCCVCMGRK---KGAAFIPCGHTFCRVCSREMWLNRGSCPLCNR 221 (230)
Q Consensus 181 ~C~ICl~~~---~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~ 221 (230)
.|.+|++.+ ..+.+++|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999988 34678899999999999998755569999974
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.52 E-value=4.3e-08 Score=64.76 Aligned_cols=35 Identities=31% Similarity=0.886 Sum_probs=22.2
Q ss_pred ccccCCCccc----cEEeccCCcccHhhHHHHHhCC----CCCc
Q 026976 182 CCVCMGRKKG----AAFIPCGHTFCRVCSREMWLNR----GSCP 217 (230)
Q Consensus 182 C~ICl~~~~~----pv~lpCGH~FC~~Cl~~~l~~~----~~CP 217 (230)
|+||.+ +.+ |++|+|||+||..|+.+++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 8999999999999999998853 2665
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.51 E-value=3.5e-08 Score=88.83 Aligned_cols=48 Identities=31% Similarity=0.649 Sum_probs=44.2
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
..+.|.||.+++.-|+.++|||+||..||..++..+..||+||.....
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 466799999999999999999999999999999999999999987654
No 21
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.51 E-value=6.4e-08 Score=70.39 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=39.7
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhC-CCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN-RGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~~ 225 (230)
+.+.|+|+.+++.+||.+|+||+|++.|+..|+.. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 57889999999999999999999999999999998 6799999988764
No 22
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.1e-08 Score=89.19 Aligned_cols=54 Identities=26% Similarity=0.893 Sum_probs=49.6
Q ss_pred CCCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
+...+|.||+...++.+++||.|. .|..|.+.....++.||+||.+|..+++||
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 446789999999999999999998 899999988878889999999999999886
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.1e-08 Score=92.64 Aligned_cols=47 Identities=32% Similarity=0.788 Sum_probs=42.4
Q ss_pred CCcccccCCCccccEEeccCCcccHhhHHHHHhCC-----CCCccccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR-----GSCPLCNRSILE 225 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~-----~~CP~CR~~i~~ 225 (230)
+..|+||++.+.-|+.+.|||.||..||-.+|... ..||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78899999999999999999999999999998865 399999988754
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.45 E-value=1.5e-07 Score=68.56 Aligned_cols=41 Identities=29% Similarity=0.788 Sum_probs=33.1
Q ss_pred CcccccCCCccc------------c-EEeccCCcccHhhHHHHHhCCCCCcccc
Q 026976 180 SMCCVCMGRKKG------------A-AFIPCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 180 ~~C~ICl~~~~~------------p-v~lpCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
..|.||++.+.+ + +..+|||.|+..||.+|+.....||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 349999998722 2 3447999999999999999999999997
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.6e-08 Score=82.55 Aligned_cols=45 Identities=33% Similarity=0.968 Sum_probs=40.6
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
..+.+.|+||++.+..|+.+||||+||..|+..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 346889999999999999999999999999999988445999999
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.3e-07 Score=83.91 Aligned_cols=46 Identities=30% Similarity=0.743 Sum_probs=40.4
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHH-HHhCCC-CCccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSRE-MWLNRG-SCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~-~l~~~~-~CP~CR~~i 223 (230)
.+..|.||++....|+.++|||+||..|+-. |-.... .||+||+.+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 4788999999999999999999999999988 655555 699999765
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.6e-08 Score=95.94 Aligned_cols=55 Identities=33% Similarity=0.699 Sum_probs=48.0
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccc--ccccccC
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSI--LEILDIF 230 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i--~~il~If 230 (230)
....+.|++|...+++.|.+.|||+||..|+......+. .||.|+..| .++++||
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 456889999999999999999999999999988877654 999999887 6777776
No 28
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.5e-08 Score=88.10 Aligned_cols=48 Identities=33% Similarity=1.045 Sum_probs=44.9
Q ss_pred CCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
...|.|||+.+.+.++|+|||. -|..|-.++ ..||+||+.|.++.+||
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence 7789999999999999999996 899999877 59999999999999998
No 29
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.5e-07 Score=85.53 Aligned_cols=47 Identities=26% Similarity=0.680 Sum_probs=40.4
Q ss_pred CcccccCCCcccc---EEeccCCcccHhhHHHHHhCCC-CCcccccccccc
Q 026976 180 SMCCVCMGRKKGA---AFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILEI 226 (230)
Q Consensus 180 ~~C~ICl~~~~~p---v~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~i 226 (230)
..|.||++.+..- ..|||.|.|+..|++.|+.... .||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 4899999998753 5689999999999999999876 599999887654
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.8e-07 Score=81.01 Aligned_cols=47 Identities=28% Similarity=0.691 Sum_probs=39.6
Q ss_pred CCCcccccCCCccc---cEEeccCCcccHhhHHHHHh-CCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKG---AAFIPCGHTFCRVCSREMWL-NRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~---pv~lpCGH~FC~~Cl~~~l~-~~~~CP~CR~~i~ 224 (230)
..-+|.|||..+.. -+.+||.|.|+..|+++|+. .+..||+||..+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 35789999997753 36789999999999999999 5569999998874
No 31
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=9.1e-07 Score=82.10 Aligned_cols=48 Identities=27% Similarity=0.792 Sum_probs=41.5
Q ss_pred cCCCCcccccCCCc-c------------ccEEeccCCcccHhhHHHHHhCCCCCccccccc
Q 026976 176 AGNDSMCCVCMGRK-K------------GAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 176 ~~~~~~C~ICl~~~-~------------~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
..++..|.|||+.+ . .|..+||||.|+..|++.|+....+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 45778899999973 2 247899999999999999999999999999884
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.03 E-value=5.5e-07 Score=64.22 Aligned_cols=44 Identities=27% Similarity=0.733 Sum_probs=24.4
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
..+.|++|.+.+++||.+ .|.|.||..|+..-+. ..||+|+.+-
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 467899999999999865 6999999999976433 4699999774
No 33
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.5e-06 Score=80.40 Aligned_cols=50 Identities=32% Similarity=0.801 Sum_probs=46.0
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+..++.|.||+..+.+|+.+||||.||..|+.+.+.....||.||..+.+
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 46789999999999999999999999999999998888899999988764
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2e-06 Score=83.98 Aligned_cols=47 Identities=28% Similarity=0.802 Sum_probs=42.5
Q ss_pred CCCCcccccCCCccc-----cEEeccCCcccHhhHHHHHhCCCCCccccccc
Q 026976 177 GNDSMCCVCMGRKKG-----AAFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~-----pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
..+..|.||++.+.. +..++|+|.||..|+..|+....+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 357789999999887 78999999999999999999999999999843
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.3e-06 Score=80.38 Aligned_cols=50 Identities=22% Similarity=0.578 Sum_probs=42.2
Q ss_pred cCCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
+...+.|+||+++++....++ |+|.||..||...++..+ .||.||+.+-.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 346888999999999887776 999999999988877655 99999987643
No 36
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.81 E-value=5.2e-06 Score=75.90 Aligned_cols=51 Identities=29% Similarity=0.592 Sum_probs=45.6
Q ss_pred cCCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
+...+.|.+|-+++.++..+. |-|+||+.||.+++.....||.|...|.+.
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 346889999999999998876 999999999999999989999999887654
No 37
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.3e-06 Score=75.71 Aligned_cols=51 Identities=31% Similarity=0.810 Sum_probs=40.6
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
.....|.||.+.+++.+++||||+.| |..-..+ -..||+||..|..++++|
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-LPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhh-CCCCchhHHHHHHHHHHh
Confidence 34567999999999999999999955 5433322 246999999999999887
No 38
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.65 E-value=3.9e-05 Score=57.69 Aligned_cols=30 Identities=27% Similarity=0.675 Sum_probs=25.9
Q ss_pred eccCCcccHhhHHHHHhCC---CCCcccccccc
Q 026976 195 IPCGHTFCRVCSREMWLNR---GSCPLCNRSIL 224 (230)
Q Consensus 195 lpCGH~FC~~Cl~~~l~~~---~~CP~CR~~i~ 224 (230)
-.|+|.|+..||.+|+... ..||+||+...
T Consensus 50 g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 50 GKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3699999999999999963 49999998764
No 39
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.49 E-value=4.8e-05 Score=71.73 Aligned_cols=52 Identities=27% Similarity=0.699 Sum_probs=46.1
Q ss_pred cCCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCccccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il 227 (230)
...++.|++|+..+.+|+.. .|||.||..|+..|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 45688999999999999984 89999999999999999889999988776544
No 40
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.39 E-value=6.2e-05 Score=70.75 Aligned_cols=47 Identities=28% Similarity=0.711 Sum_probs=41.0
Q ss_pred cccccCCCccccEEeccCCcccHhhHHHHHhCC--CCCccccccccccc
Q 026976 181 MCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR--GSCPLCNRSILEIL 227 (230)
Q Consensus 181 ~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~--~~CP~CR~~i~~il 227 (230)
.|.||-+.-++...-||||..|..|+..|.... ..||.||..|+..-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 599999999998888999999999999997654 39999999997653
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.34 E-value=6.4e-05 Score=64.82 Aligned_cols=46 Identities=22% Similarity=0.732 Sum_probs=40.8
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
..+.|.||...+..||++.|||.||..|..+-.+....|-+|-+..
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 4568999999999999999999999999988888778999997654
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=9.2e-05 Score=67.04 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=42.5
Q ss_pred CCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
.+.|-||...+.+||+..|+|.||..|...-++....|.+|.+.+..+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 456999999999999999999999999988877778999998876554
No 43
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00024 Score=63.78 Aligned_cols=49 Identities=31% Similarity=0.652 Sum_probs=40.7
Q ss_pred cCCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCC--CCCcccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNR--GSCPLCNRSIL 224 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~--~~CP~CR~~i~ 224 (230)
...+.+|++|-+.+..|..+- |+|+||+.|+....... ..||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346889999999999997765 99999999998776644 59999987765
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00016 Score=67.15 Aligned_cols=51 Identities=29% Similarity=0.673 Sum_probs=40.8
Q ss_pred CCCCcccccCCCccccE-----E---eccCCcccHhhHHHHHh--C-----CCCCccccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAA-----F---IPCGHTFCRVCSREMWL--N-----RGSCPLCNRSILEIL 227 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv-----~---lpCGH~FC~~Cl~~~l~--~-----~~~CP~CR~~i~~il 227 (230)
..+..|.|||+...+.+ + .+|.|.||..|+..|.. + .+.||.||.....+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 35778999999876655 4 56999999999999983 3 359999998876654
No 45
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00026 Score=65.76 Aligned_cols=50 Identities=26% Similarity=0.764 Sum_probs=45.7
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
.++..|+||.--..++++.||+|.-|+.||.+.+-+.+.|=.|+..+..+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 56788999999999999999999999999999999999999999887643
No 46
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.04 E-value=0.00049 Score=48.02 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=29.6
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCC--CCCcc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNR--GSCPL 218 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~--~~CP~ 218 (230)
..+.|+|.+..+.+||.- .|||+|.+..+..|+... ..||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 478899999999999885 699999999999999443 39998
No 47
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00044 Score=63.50 Aligned_cols=55 Identities=22% Similarity=0.640 Sum_probs=45.5
Q ss_pred cCCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCCCCCcccccc--cccccccC
Q 026976 176 AGNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNRGSCPLCNRS--ILEILDIF 230 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~~~CP~CR~~--i~~il~If 230 (230)
..+...|+||+....+|..+. -|.+||+.|+-.++.+.+.||+-..+ +..++|+|
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 456778999999999987777 59999999999999999999986644 45666655
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.96 E-value=0.0002 Score=51.78 Aligned_cols=47 Identities=28% Similarity=0.736 Sum_probs=23.4
Q ss_pred CCcccccCCCcc-c---cEEe----ccCCcccHhhHHHHHhCC-----------CCCccccccccc
Q 026976 179 DSMCCVCMGRKK-G---AAFI----PCGHTFCRVCSREMWLNR-----------GSCPLCNRSILE 225 (230)
Q Consensus 179 ~~~C~ICl~~~~-~---pv~l----pCGH~FC~~Cl~~~l~~~-----------~~CP~CR~~i~~ 225 (230)
+..|.||+.... + |..+ .|++.|+..|+.+|+... +.||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 567999998754 2 2111 489999999999998731 279999988753
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.91 E-value=0.00036 Score=66.39 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=36.6
Q ss_pred cCCCCcccccCCCcccc----EEeccCCcccHhhHHHHHhCCCCCccccccc
Q 026976 176 AGNDSMCCVCMGRKKGA----AFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
+.+--.|+||++++... +.+.|.|.|+..|+..|+. .+||+||.-.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 34566899999988654 4567999999999999954 6999999543
No 50
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00044 Score=66.56 Aligned_cols=50 Identities=24% Similarity=0.565 Sum_probs=39.5
Q ss_pred cCCCCcccccCCCcc-----------------ccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 176 AGNDSMCCVCMGRKK-----------------GAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~-----------------~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
.+....|.|||.... +-.++||-|.|+..|+..|+...+ .||+||.++.-
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 456678999997431 123459999999999999999666 99999998753
No 51
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.81 E-value=0.0005 Score=62.68 Aligned_cols=43 Identities=35% Similarity=0.787 Sum_probs=37.3
Q ss_pred CCcccccCCCccccEEec-cCCcccHhhHHHHHhC-CCCCccccc
Q 026976 179 DSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLN-RGSCPLCNR 221 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~-~~~CP~CR~ 221 (230)
.+.|++|..++.+|+.+| |+|.||..||...+.. ...||.|-.
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 378999999999999997 7999999999876664 559999965
No 52
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.77 E-value=0.0004 Score=67.43 Aligned_cols=46 Identities=26% Similarity=0.691 Sum_probs=39.6
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCC-----CCCccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR-----GSCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~-----~~CP~CR~~i 223 (230)
....|.+|.+...+++...|.|.||+.|+.+++... .+||.|-..+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 466899999999999999999999999998887743 2999997654
No 53
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.70 E-value=0.0014 Score=44.17 Aligned_cols=40 Identities=20% Similarity=0.642 Sum_probs=31.8
Q ss_pred cccccCC--CccccEEeccC-----CcccHhhHHHHHhCCC--CCcccc
Q 026976 181 MCCVCMG--RKKGAAFIPCG-----HTFCRVCSREMWLNRG--SCPLCN 220 (230)
Q Consensus 181 ~C~ICl~--~~~~pv~lpCG-----H~FC~~Cl~~~l~~~~--~CP~CR 220 (230)
.|.||++ ...++...||. |.++..|+.+|+.... .||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 44566778984 7799999999997654 999994
No 54
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.63 E-value=0.00035 Score=70.34 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=40.9
Q ss_pred CCCcccccCCCcccc---EEeccCCcccHhhHHHHHhCCCCCccccccccccc
Q 026976 178 NDSMCCVCMGRKKGA---AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p---v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il 227 (230)
....|++|+.-+.+- ...+|+|.||..|+..|-+....||+||..|.+++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 456799998765543 33579999999999999999999999999987764
No 55
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.00094 Score=60.07 Aligned_cols=46 Identities=28% Similarity=0.733 Sum_probs=36.7
Q ss_pred CCCcccccCCCcc----------ccEEeccCCcccHhhHHHHHhCCC--CCccccccc
Q 026976 178 NDSMCCVCMGRKK----------GAAFIPCGHTFCRVCSREMWLNRG--SCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~----------~pv~lpCGH~FC~~Cl~~~l~~~~--~CP~CR~~i 223 (230)
++..|.||-..+. +...+.|+|+|+..||.-|..-.+ +||.|...+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 5778999966442 446789999999999999977544 999998765
No 56
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.41 E-value=0.0029 Score=47.13 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=26.6
Q ss_pred ccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 196 PCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
-|.|.|+..||.+|+..++.||++|+...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 49999999999999999999999998753
No 57
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.36 E-value=0.0011 Score=68.20 Aligned_cols=53 Identities=23% Similarity=0.558 Sum_probs=40.2
Q ss_pred ccccCCCCcccccCCCcc--c-----cEEeccCCcccHhhHHHHHhCCC--CCccccccccc
Q 026976 173 EEKAGNDSMCCVCMGRKK--G-----AAFIPCGHTFCRVCSREMWLNRG--SCPLCNRSILE 225 (230)
Q Consensus 173 ~e~~~~~~~C~ICl~~~~--~-----pv~lpCGH~FC~~Cl~~~l~~~~--~CP~CR~~i~~ 225 (230)
.+++...-+|+||...+. + ...-.|.|.|+..|+.+|.+..+ +||+||..|+-
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 345667778999987653 1 12223899999999999999755 99999988753
No 58
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.22 E-value=0.003 Score=42.66 Aligned_cols=42 Identities=31% Similarity=0.870 Sum_probs=21.8
Q ss_pred ccccCCCc--cccEEec--cCCcccHhhHHHHHh-CCCCCccccccc
Q 026976 182 CCVCMGRK--KGAAFIP--CGHTFCRVCSREMWL-NRGSCPLCNRSI 223 (230)
Q Consensus 182 C~ICl~~~--~~pv~lp--CGH~FC~~Cl~~~l~-~~~~CP~CR~~i 223 (230)
|++|.+.+ .+..+.| ||+.+|..|....+. ..+.||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888765 2334555 789999999999987 467999999864
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.0046 Score=55.07 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=42.5
Q ss_pred CCCCcccccCCCcccc----EEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 177 GNDSMCCVCMGRKKGA----AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
...+.|+||.+.+.|. +.-||||+||..|+++.+...+.||+|-.++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 3678999999998874 444899999999999999999999999988765
No 60
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.94 E-value=0.0033 Score=43.62 Aligned_cols=46 Identities=24% Similarity=0.624 Sum_probs=36.8
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
....|-.|...-...+++||||..|..|..-+ .-+.||.|..+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 45668888888788889999999999997533 33699999988754
No 61
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0047 Score=53.66 Aligned_cols=45 Identities=24% Similarity=0.795 Sum_probs=37.3
Q ss_pred ccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 182 CCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 182 C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
|.+|...-...+.+||.|. +|..|-... ..||+|+.....-+.+|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 9999999999999999997 999997542 56999998877665554
No 62
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.42 E-value=0.013 Score=52.25 Aligned_cols=49 Identities=24% Similarity=0.541 Sum_probs=38.3
Q ss_pred cCCCCcccccCCCccc---c-EEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKG---A-AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~---p-v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
....+.|||....+.. . +..||||+|+..++.... ....||+|..++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 3567899999887743 2 334899999999999884 35689999998864
No 63
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0075 Score=47.01 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=25.3
Q ss_pred ccCCcccHhhHHHHHhCCCCCcccccc
Q 026976 196 PCGHTFCRVCSREMWLNRGSCPLCNRS 222 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~~~CP~CR~~ 222 (230)
-|.|.|+..|+.+|++.+..||+|++.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 499999999999999999999999875
No 64
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.41 E-value=0.0059 Score=61.49 Aligned_cols=45 Identities=29% Similarity=0.758 Sum_probs=38.6
Q ss_pred CcccccCCCccccEEeccCCcccHhhHHHHHhCCC--CCccccccccc
Q 026976 180 SMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG--SCPLCNRSILE 225 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~--~CP~CR~~i~~ 225 (230)
..|.+|++ ...++.++|+|.||..|+...+.... .||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 77788889999999999998877544 79999977643
No 65
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0053 Score=56.32 Aligned_cols=45 Identities=33% Similarity=0.691 Sum_probs=31.3
Q ss_pred cccccCC-CccccEEeccCCcccHhhHHHHHhCCCCCccccccccccc
Q 026976 181 MCCVCMG-RKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227 (230)
Q Consensus 181 ~C~ICl~-~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il 227 (230)
.|.-|-- ...--.++||.|+||.+|.. ....+.||.|--.|.+|-
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECAR--SDSDKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhh--cCccccCcCcccHHHHHH
Confidence 4555632 23344678999999999975 344679999987766553
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.0065 Score=57.46 Aligned_cols=45 Identities=31% Similarity=0.925 Sum_probs=34.5
Q ss_pred cCCCCcccccCCCccc---cEEeccCCcccHhhHHHHHhCC---C-----CCcccc
Q 026976 176 AGNDSMCCVCMGRKKG---AAFIPCGHTFCRVCSREMWLNR---G-----SCPLCN 220 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~---pv~lpCGH~FC~~Cl~~~l~~~---~-----~CP~CR 220 (230)
....+.|.||++.... -+++||+|+||+.|+..+.... + .||-+.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3456789999997654 5788999999999998886531 1 777665
No 67
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.0083 Score=44.40 Aligned_cols=29 Identities=28% Similarity=0.660 Sum_probs=24.7
Q ss_pred ccCCcccHhhHHHHHhCC---CCCcccccccc
Q 026976 196 PCGHTFCRVCSREMWLNR---GSCPLCNRSIL 224 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~---~~CP~CR~~i~ 224 (230)
-|.|.|+..||.+|+... ..||+||....
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 399999999999999854 39999998753
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.98 E-value=0.021 Score=53.33 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=39.7
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHH--HhCCCCCccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREM--WLNRGSCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~--l~~~~~CP~CR~~i~~ 225 (230)
++...|.||-+-..-...+||+|..|..|..+. +...+.|++||..-..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 356679999998888888999999999997544 5567899999976443
No 69
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.97 E-value=0.014 Score=47.46 Aligned_cols=49 Identities=24% Similarity=0.708 Sum_probs=42.0
Q ss_pred CCCcccccCCCccccEEec----cCCcccHhhHHHHHhCCC---CCcccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIP----CGHTFCRVCSREMWLNRG---SCPLCNRSILEI 226 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lp----CGH~FC~~Cl~~~l~~~~---~CP~CR~~i~~i 226 (230)
.-.+|.||.+...+..+|. ||-..|..|....|+... .||+|+.+++..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4568999999998888884 899999999999888654 999999988764
No 70
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.74 E-value=0.018 Score=52.77 Aligned_cols=45 Identities=31% Similarity=0.722 Sum_probs=36.4
Q ss_pred CCCcccccCCCccccEEecc--CCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPC--GHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpC--GH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
+-+.|+||.+.+..|++ .| ||.-|..|-.+. ...||.||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLACSSCRTKV---SNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEehhhhhhhh---cccCCccccccccH
Confidence 46679999999988865 55 899999997533 46999999998765
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.57 E-value=0.03 Score=42.27 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=26.2
Q ss_pred cCCCCcccccCCCccccE--EeccCCcccHhhHH
Q 026976 176 AGNDSMCCVCMGRKKGAA--FIPCGHTFCRVCSR 207 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv--~lpCGH~FC~~Cl~ 207 (230)
+.....|++|...+.+.+ +.||||+||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 567788999999887654 45999999999975
No 72
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.074 Score=48.43 Aligned_cols=37 Identities=32% Similarity=0.744 Sum_probs=31.5
Q ss_pred CCCCcccccCCCccccEEecc----CCcccHhhHHHHHhCC
Q 026976 177 GNDSMCCVCMGRKKGAAFIPC----GHTFCRVCSREMWLNR 213 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpC----GH~FC~~Cl~~~l~~~ 213 (230)
...+.|.+|.+++.+..|+.| .|.||+.|..+..+..
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 346889999999999999988 6889999998877753
No 73
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.27 E-value=0.025 Score=53.50 Aligned_cols=47 Identities=30% Similarity=0.645 Sum_probs=36.5
Q ss_pred CCCcccccCCCcc----ccEEeccCCcccHhhHHHHHhCCC--CCcccccccc
Q 026976 178 NDSMCCVCMGRKK----GAAFIPCGHTFCRVCSREMWLNRG--SCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~----~pv~lpCGH~FC~~Cl~~~l~~~~--~CP~CR~~i~ 224 (230)
-.+.|..|=+.+- +--.+||.|.|+..|+..++.+.. +||.||+-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4778999976532 234579999999999999997665 9999995443
No 74
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=0.062 Score=55.01 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=38.3
Q ss_pred cCCCCcccccCCCcccc-EEeccCCcccHhhHHHHHhCCCCCcccccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGA-AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILD 228 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~p-v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il~ 228 (230)
+-....|..|-..+.-| |...|||.|+..|+. .....||.|+.....+++
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhhhHH
Confidence 33456899998877766 667899999999998 445699999986655443
No 75
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.11 Score=49.13 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=35.9
Q ss_pred cCCCCcccccCCCc---cccEEeccCCcccHhhHHHHHhCCC---CCcccccc
Q 026976 176 AGNDSMCCVCMGRK---KGAAFIPCGHTFCRVCSREMWLNRG---SCPLCNRS 222 (230)
Q Consensus 176 ~~~~~~C~ICl~~~---~~pv~lpCGH~FC~~Cl~~~l~~~~---~CP~CR~~ 222 (230)
+-.-+.|||=.+.- ..|..+.|||+.|+.-+.+...+.. .||+|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 34556788855533 3478999999999999998877654 99999754
No 76
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.38 E-value=0.048 Score=49.95 Aligned_cols=48 Identities=19% Similarity=0.520 Sum_probs=36.2
Q ss_pred CCCcccccCCCccc-c--EEeccCCcccHhhHHHHHhC-----------------------CCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKG-A--AFIPCGHTFCRVCSREMWLN-----------------------RGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~-p--v~lpCGH~FC~~Cl~~~l~~-----------------------~~~CP~CR~~i~~ 225 (230)
....|.||+--|.+ + +.++|.|.|+..|+.+++.. ...||+||..|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 46689999876654 2 55689999999999877653 1289999988753
No 77
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.47 E-value=0.15 Score=47.69 Aligned_cols=44 Identities=32% Similarity=0.884 Sum_probs=32.1
Q ss_pred cccccCCCcc--ccEEe--ccCCcccHhhHHHHHhC-CCCCcccccccc
Q 026976 181 MCCVCMGRKK--GAAFI--PCGHTFCRVCSREMWLN-RGSCPLCNRSIL 224 (230)
Q Consensus 181 ~C~ICl~~~~--~pv~l--pCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~ 224 (230)
.|++|++.+. +.-|. |||...|..|....... .+.||.||+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 4999998653 33444 58888899998766554 459999998754
No 78
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=90.25 E-value=0.18 Score=54.73 Aligned_cols=51 Identities=35% Similarity=0.746 Sum_probs=39.1
Q ss_pred cCCCCcccccCCCc---cccEEeccCCcccHhhHHHHHhCC----------CCCcccccccccc
Q 026976 176 AGNDSMCCVCMGRK---KGAAFIPCGHTFCRVCSREMWLNR----------GSCPLCNRSILEI 226 (230)
Q Consensus 176 ~~~~~~C~ICl~~~---~~pv~lpCGH~FC~~Cl~~~l~~~----------~~CP~CR~~i~~i 226 (230)
...+..|-||+... ...+.+.|+|.|+..|..+.+.++ ..||+|..+|..+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 45577899998743 235788999999999998877653 2999999887543
No 79
>PHA03096 p28-like protein; Provisional
Probab=90.05 E-value=0.15 Score=46.50 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=28.7
Q ss_pred CcccccCCCcccc--------EEeccCCcccHhhHHHHHhCCC---CCcccc
Q 026976 180 SMCCVCMGRKKGA--------AFIPCGHTFCRVCSREMWLNRG---SCPLCN 220 (230)
Q Consensus 180 ~~C~ICl~~~~~p--------v~lpCGH~FC~~Cl~~~l~~~~---~CP~CR 220 (230)
..|.||++..... ..-.|.|.||..|+..|..... .||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 6799999964321 2225999999999999977543 454444
No 80
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.90 E-value=0.13 Score=34.79 Aligned_cols=44 Identities=25% Similarity=0.677 Sum_probs=26.3
Q ss_pred ccccCCCccccEEeccC-CcccHhhHHHHHhCCCCCccccccccccc
Q 026976 182 CCVCMGRKKGAAFIPCG-HTFCRVCSREMWLNRGSCPLCNRSILEIL 227 (230)
Q Consensus 182 C~ICl~~~~~pv~lpCG-H~FC~~Cl~~~l~~~~~CP~CR~~i~~il 227 (230)
|.-|--. +.-.+.|. |..|..|+..++.....||+|..++...+
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 5555433 33466786 77999999999999899999999887654
No 81
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.86 E-value=0.33 Score=31.76 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=23.4
Q ss_pred ccccCCCccccEEec---cCCcccHhhHHHHHhCCC--CCccc
Q 026976 182 CCVCMGRKKGAAFIP---CGHTFCRVCSREMWLNRG--SCPLC 219 (230)
Q Consensus 182 C~ICl~~~~~pv~lp---CGH~FC~~Cl~~~l~~~~--~CP~C 219 (230)
|.+|.+.....+.-+ |+-.++..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888776665544 888899999999999766 79987
No 82
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.71 E-value=0.2 Score=51.38 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=36.7
Q ss_pred CCCCcccccCCCcccc-EEe---ccCCcccHhhHHHHHhCCC-------CCcccccccccc
Q 026976 177 GNDSMCCVCMGRKKGA-AFI---PCGHTFCRVCSREMWLNRG-------SCPLCNRSILEI 226 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p-v~l---pCGH~FC~~Cl~~~l~~~~-------~CP~CR~~i~~i 226 (230)
...++|.||.+..... -+. .|-|+|+..||.+|..... .||.|+...+.+
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 3688999999976532 222 4779999999999987521 899998554443
No 83
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.87 E-value=0.09 Score=52.90 Aligned_cols=47 Identities=23% Similarity=0.662 Sum_probs=38.7
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhC---CCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN---RGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~---~~~CP~CR~~i~ 224 (230)
..++|+||...++.++.+.|.|.||..|+...+.. ...||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 57789999999999999999999999998655443 349999986553
No 84
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.62 E-value=0.16 Score=45.32 Aligned_cols=46 Identities=28% Similarity=0.774 Sum_probs=33.8
Q ss_pred CCCcccccCC-Ccccc--EEe--c-cCCcccHhhHHHHHhCCC-CCc--cccccc
Q 026976 178 NDSMCCVCMG-RKKGA--AFI--P-CGHTFCRVCSREMWLNRG-SCP--LCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~-~~~~p--v~l--p-CGH~FC~~Cl~~~l~~~~-~CP--~CR~~i 223 (230)
.+..||||.. .+-+| .++ | |-|.+|.+|+.+.+.... .|| -|.+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3568999975 34444 222 5 999999999999988765 999 776544
No 85
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=0.32 Score=43.13 Aligned_cols=46 Identities=28% Similarity=0.601 Sum_probs=36.7
Q ss_pred CCcccccCCCcc--ccEEeccCCcccHhhHHHHHhCC-------C-CCcccccccc
Q 026976 179 DSMCCVCMGRKK--GAAFIPCGHTFCRVCSREMWLNR-------G-SCPLCNRSIL 224 (230)
Q Consensus 179 ~~~C~ICl~~~~--~pv~lpCGH~FC~~Cl~~~l~~~-------~-~CP~CR~~i~ 224 (230)
.--|.+|...+. +.+.+-|-|.|++.|+.+|..+- + .||.|...|-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 456999988664 56788999999999999987642 2 9999988763
No 86
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=0.12 Score=51.76 Aligned_cols=39 Identities=28% Similarity=0.681 Sum_probs=30.2
Q ss_pred CCCCcccccCCCcc----ccEEeccCCcccHhhHHHHHhCCCCCc
Q 026976 177 GNDSMCCVCMGRKK----GAAFIPCGHTFCRVCSREMWLNRGSCP 217 (230)
Q Consensus 177 ~~~~~C~ICl~~~~----~pv~lpCGH~FC~~Cl~~~l~~~~~CP 217 (230)
.+-+.|.||+..+. .|+++-|||+.|..|+..... ..||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 34567999988764 578888999999999987643 4666
No 87
>PHA02862 5L protein; Provisional
Probab=88.16 E-value=0.44 Score=39.44 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=33.0
Q ss_pred CcccccCCCccccEEeccCCc-----ccHhhHHHHHhCCC--CCccccccc
Q 026976 180 SMCCVCMGRKKGAAFIPCGHT-----FCRVCSREMWLNRG--SCPLCNRSI 223 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~lpCGH~-----FC~~Cl~~~l~~~~--~CP~CR~~i 223 (230)
..|-||++.-.+. .-||.-. -+..|+.+|+.... .|++|+.++
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 4699999876554 4576532 58999999998654 999999775
No 88
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=87.74 E-value=0.61 Score=39.12 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=34.4
Q ss_pred CCCCcccccCCCccccEEeccC--Cc---ccHhhHHHHHhCCC--CCccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCG--HT---FCRVCSREMWLNRG--SCPLCNRSI 223 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCG--H~---FC~~Cl~~~l~~~~--~CP~CR~~i 223 (230)
..+..|-||.+.... ..-||. .. -+..|+.+|....+ .|+.|+.++
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 356789999987543 335754 32 48999999999765 999999775
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=0.35 Score=43.34 Aligned_cols=33 Identities=30% Similarity=0.839 Sum_probs=27.0
Q ss_pred cccEEeccCCcccHhhHHHHHhCCC-CCcccccc
Q 026976 190 KGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRS 222 (230)
Q Consensus 190 ~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~ 222 (230)
..|..+.|||+||..|+...+.... .||.||..
T Consensus 20 ~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~ 53 (296)
T KOG4185|consen 20 HIPRVLKCGHTICQNCASKLLGNSRILCPFCRET 53 (296)
T ss_pred cCCcccccCceehHhHHHHHhcCceeeccCCCCc
Confidence 4455667999999999998877655 89999977
No 90
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.66 E-value=0.26 Score=44.75 Aligned_cols=45 Identities=27% Similarity=0.611 Sum_probs=36.2
Q ss_pred CcccccCCCc----cccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 180 SMCCVCMGRK----KGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 180 ~~C~ICl~~~----~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.-|+||.+.+ ..+..++|||.....|+..+....-+||+|-. +.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 3499998754 35677899999999999998887789999987 443
No 91
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.49 Score=40.61 Aligned_cols=46 Identities=26% Similarity=0.691 Sum_probs=33.2
Q ss_pred CcccccCCCcccc-------EEeccCCcccHhhHHHHHhC-----------CCCCccccccccc
Q 026976 180 SMCCVCMGRKKGA-------AFIPCGHTFCRVCSREMWLN-----------RGSCPLCNRSILE 225 (230)
Q Consensus 180 ~~C~ICl~~~~~p-------v~lpCGH~FC~~Cl~~~l~~-----------~~~CP~CR~~i~~ 225 (230)
.-|.||.-+.-+. -.+.||..|+.-|+..|++. .+.||+|..+|.-
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3577776643322 22469999999999999984 1399999988753
No 92
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=84.87 E-value=0.57 Score=38.19 Aligned_cols=35 Identities=23% Similarity=0.636 Sum_probs=27.2
Q ss_pred CCcccccCCCccc---cEEeccCC------cccHhhHHHHHhCC
Q 026976 179 DSMCCVCMGRKKG---AAFIPCGH------TFCRVCSREMWLNR 213 (230)
Q Consensus 179 ~~~C~ICl~~~~~---pv~lpCGH------~FC~~Cl~~~l~~~ 213 (230)
..+|.||++...+ .|.++||- .||..|+.+|.+..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 7789999997655 46677874 49999999995543
No 93
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=83.78 E-value=1.6 Score=29.41 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcccccCCCccccEEe-ccCCcccHhhHHHHHh----CCC-CCcccccc
Q 026976 180 SMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWL----NRG-SCPLCNRS 222 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~----~~~-~CP~CR~~ 222 (230)
+.|++.......|+.- .|.|.-|.+= +.++. ... .||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5799999999988776 4999977542 22322 222 89999763
No 94
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.89 E-value=0.85 Score=42.28 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=37.8
Q ss_pred cCCCCcccccCCCc---cccEEeccCCcccHhhHHHHHhCCC---CCcccccc--ccccccc
Q 026976 176 AGNDSMCCVCMGRK---KGAAFIPCGHTFCRVCSREMWLNRG---SCPLCNRS--ILEILDI 229 (230)
Q Consensus 176 ~~~~~~C~ICl~~~---~~pv~lpCGH~FC~~Cl~~~l~~~~---~CP~CR~~--i~~il~I 229 (230)
+-.-+.|||=.+.. ..|+++.|||+.-..-+....++.. .||+|-.. ...++++
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rv 394 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRV 394 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcc
Confidence 44556788855432 3579999999999998887766644 99999743 3444444
No 95
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.03 E-value=1 Score=40.50 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=31.4
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN 212 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~ 212 (230)
+.....|++|+..+.+|+..|=||.||+.||.++...
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4455578999999999999999999999999877543
No 96
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.05 E-value=1 Score=43.08 Aligned_cols=31 Identities=29% Similarity=0.701 Sum_probs=25.5
Q ss_pred cEEeccCCcccHhhHHHHHhCC--CCCcccccc
Q 026976 192 AAFIPCGHTFCRVCSREMWLNR--GSCPLCNRS 222 (230)
Q Consensus 192 pv~lpCGH~FC~~Cl~~~l~~~--~~CP~CR~~ 222 (230)
.+.+.|||.|-..|+++|+... ..||.|...
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 4677899999999999999632 299999854
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=80.63 E-value=3.1 Score=39.19 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=31.8
Q ss_pred cCCCCcccccCCCccccEEe-----------------cc-----CCcccHhhHHHHHhCC-------------CCCcccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFI-----------------PC-----GHTFCRVCSREMWLNR-------------GSCPLCN 220 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~l-----------------pC-----GH~FC~~Cl~~~l~~~-------------~~CP~CR 220 (230)
..+...|--|+....+.... +| ....|..|+-+|+..+ ..||.||
T Consensus 268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 34455677788765543322 22 3345899998887642 3999999
Q ss_pred cccc
Q 026976 221 RSIL 224 (230)
Q Consensus 221 ~~i~ 224 (230)
+.+-
T Consensus 348 a~FC 351 (358)
T PF10272_consen 348 AKFC 351 (358)
T ss_pred ccce
Confidence 9863
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.29 E-value=0.44 Score=50.97 Aligned_cols=45 Identities=22% Similarity=0.675 Sum_probs=38.4
Q ss_pred CCCcccccCCCccc-cEEeccCCcccHhhHHHHHhCCCCCcccccc
Q 026976 178 NDSMCCVCMGRKKG-AAFIPCGHTFCRVCSREMWLNRGSCPLCNRS 222 (230)
Q Consensus 178 ~~~~C~ICl~~~~~-pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~ 222 (230)
....|.+|.+...+ ....-|||-+|..|...|+..+..||.|...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 56689999998884 4455799999999999999999999999743
No 99
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=79.50 E-value=0.87 Score=41.08 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=25.2
Q ss_pred ccCCCCcccccCCCccccEEecc---C--CcccHhhHHHHHhCCCCCcccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPC---G--HTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpC---G--H~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
..+....||||=....-.+...= | |.+|..|-..|...+..||.|-..-...
T Consensus 168 ~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~ 224 (290)
T PF04216_consen 168 EGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEK 224 (290)
T ss_dssp --TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-E
T ss_pred CCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcc
Confidence 34566799999887665555443 4 4489999999988888999998664443
No 100
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=78.98 E-value=0.84 Score=30.32 Aligned_cols=38 Identities=21% Similarity=0.636 Sum_probs=23.9
Q ss_pred ccccCCCcc--ccEEeccCC-----cccHhhHHHHHhCC--CCCccc
Q 026976 182 CCVCMGRKK--GAAFIPCGH-----TFCRVCSREMWLNR--GSCPLC 219 (230)
Q Consensus 182 C~ICl~~~~--~pv~lpCGH-----~FC~~Cl~~~l~~~--~~CP~C 219 (230)
|-||++... ++...||.- ..+..|+.+|+... ..|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678877543 246678742 26899999999854 378877
No 101
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.78 E-value=1.1 Score=42.91 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=29.9
Q ss_pred CCCcccccCCCccc-cEEeccCCcccHhhHHHHHhC
Q 026976 178 NDSMCCVCMGRKKG-AAFIPCGHTFCRVCSREMWLN 212 (230)
Q Consensus 178 ~~~~C~ICl~~~~~-pv~lpCGH~FC~~Cl~~~l~~ 212 (230)
....|.||.+.+.. .+.+.|||.||..|...++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999998875 677789999999999988764
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=76.44 E-value=1.8 Score=44.80 Aligned_cols=52 Identities=25% Similarity=0.569 Sum_probs=39.5
Q ss_pred CCCcccccCC--CccccEEeccCCc-----ccHhhHHHHHhCCC--CCcccccccccccccC
Q 026976 178 NDSMCCVCMG--RKKGAAFIPCGHT-----FCRVCSREMWLNRG--SCPLCNRSILEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~--~~~~pv~lpCGH~-----FC~~Cl~~~l~~~~--~CP~CR~~i~~il~If 230 (230)
++..|.||.. ...+|.+-||..+ .+++|+.+|+...+ +|-+|..+++-. +||
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk-~IY 71 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK-DIY 71 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee-eec
Confidence 4567999975 4567888898654 69999999999765 999998876542 444
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=1.3 Score=41.87 Aligned_cols=35 Identities=23% Similarity=0.699 Sum_probs=24.9
Q ss_pred CCCcccccCC-Ccccc---EEeccCCcccHhhHHHHHhC
Q 026976 178 NDSMCCVCMG-RKKGA---AFIPCGHTFCRVCSREMWLN 212 (230)
Q Consensus 178 ~~~~C~ICl~-~~~~p---v~lpCGH~FC~~Cl~~~l~~ 212 (230)
....|.||+. ..... ....|+|.||..|+.++...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 3567999994 33221 23469999999999988763
No 104
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.58 E-value=2.2 Score=44.26 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=27.7
Q ss_pred cCCCCcccccCCCcc-cc-EEeccCCcccHhhHHHHHh
Q 026976 176 AGNDSMCCVCMGRKK-GA-AFIPCGHTFCRVCSREMWL 211 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~-~p-v~lpCGH~FC~~Cl~~~l~ 211 (230)
++..-.|.+|...+. .| +..||||.|++.|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 667778999977543 34 4459999999999987655
No 105
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=69.73 E-value=4.5 Score=37.63 Aligned_cols=52 Identities=4% Similarity=-0.151 Sum_probs=40.6
Q ss_pred cCCCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCccccccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDI 229 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~I 229 (230)
+-..++|-+|-.-+...+..+|+|. ||-.|.. +.....||.|......+++|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 4445678899777777778899997 9999986 44556999999887777665
No 106
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=69.02 E-value=2.5 Score=32.24 Aligned_cols=39 Identities=28% Similarity=0.905 Sum_probs=30.1
Q ss_pred CCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
...|.+|......+ ||.||..|... .+.|.+|-..|.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc----cCcccccCCeeccc
Confidence 34699998766544 88899999754 37999999888654
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.15 E-value=3.2 Score=38.23 Aligned_cols=27 Identities=26% Similarity=1.004 Sum_probs=20.2
Q ss_pred cCCcccHhhHHHHHhC-------------CCCCccccccc
Q 026976 197 CGHTFCRVCSREMWLN-------------RGSCPLCNRSI 223 (230)
Q Consensus 197 CGH~FC~~Cl~~~l~~-------------~~~CP~CR~~i 223 (230)
|....|.+|+.+|... +..||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 3455789999888653 23999999876
No 108
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.33 E-value=5.5 Score=37.02 Aligned_cols=47 Identities=26% Similarity=0.763 Sum_probs=36.8
Q ss_pred CCcccccCCCc--cccEEec--cCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 179 DSMCCVCMGRK--KGAAFIP--CGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 179 ~~~C~ICl~~~--~~pv~lp--CGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
...|++|-+.. .+..++| |++..|..|+......+..||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 46799998855 3344554 88889999999998888999999976543
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.45 E-value=3.6 Score=42.49 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=31.8
Q ss_pred cCCCCcccccCCCcccc----EEec---cCCcccHhhHHHHHhCC------CCCcccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGA----AFIP---CGHTFCRVCSREMWLNR------GSCPLCNRSILEI 226 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~p----v~lp---CGH~FC~~Cl~~~l~~~------~~CP~CR~~i~~i 226 (230)
.-+...|.+|...+.++ -..| |+|.||..||..|...- -.|++|..-|..+
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 33444566655544441 2234 99999999999997742 2778887555443
No 110
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=60.80 E-value=7 Score=36.10 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=34.1
Q ss_pred cCCCCcccccCCCccccEE-e--ccCCc--ccHhhHHHHHhCCCCCccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAF-I--PCGHT--FCRVCSREMWLNRGSCPLCNR 221 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~-l--pCGH~--FC~~Cl~~~l~~~~~CP~CR~ 221 (230)
.+....|+||=....-.+. + .=|+. +|..|-..|...+..||.|..
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3457889999887654432 2 23433 799999999888889999975
No 111
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.98 E-value=7.7 Score=35.05 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=34.0
Q ss_pred cCCCCcccccCCCc----cccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRK----KGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~----~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
-...+.|+|---.+ .-.+..+|||+|-..-+.++. ...|++|.+.+..
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccc
Confidence 35577899853333 334556899999988877663 4699999987754
No 112
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=55.70 E-value=7.8 Score=35.71 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=33.7
Q ss_pred CCCCcccccCCCccccEEe----ccCC--cccHhhHHHHHhCCCCCcccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI----PCGH--TFCRVCSREMWLNRGSCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l----pCGH--~FC~~Cl~~~l~~~~~CP~CR~~ 222 (230)
+....|+||=....-.+.. .=|+ .+|..|-..|...+..||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4466899998876543322 2343 37999999998888899999864
No 113
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=55.26 E-value=9.6 Score=26.61 Aligned_cols=42 Identities=29% Similarity=0.713 Sum_probs=27.3
Q ss_pred cccccCCCcc-cc-EEeccCC--cccHhhHHHHHhCCCCCcccccccc
Q 026976 181 MCCVCMGRKK-GA-AFIPCGH--TFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 181 ~C~ICl~~~~-~p-v~lpCGH--~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.|--|-..+. +. ...=|.+ +||..|.+..+ .+.||.|...+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 4666654433 22 1223554 59999999876 479999987664
No 114
>PF11494 Ta0938: Ta0938; InterPro: IPR021585 Ta0938 is a protein of unknown function however the structure has been determined. The protein has a novel fold and a putative Zn-binding motif. The structure has two different parts, one region contains a beta sheet flanked by two alpha helices and the other contains a bundle of loops which contain all cysteines in the protein. ; PDB: 2FQH_A.
Probab=53.15 E-value=5.6 Score=30.82 Aligned_cols=14 Identities=71% Similarity=1.391 Sum_probs=5.0
Q ss_pred hCcccccc--cCCCCC
Q 026976 47 LGLKSMGC--CGATCG 60 (230)
Q Consensus 47 l~~~~~gc--~g~~~~ 60 (230)
-|.|-+|| ||+||+
T Consensus 10 ag~ke~~CalCG~tWg 25 (105)
T PF11494_consen 10 AGTKEMGCALCGATWG 25 (105)
T ss_dssp --SGGGS-SS---S--
T ss_pred cccccccccccCCcHH
Confidence 36778888 999997
No 115
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.03 E-value=4.5 Score=37.32 Aligned_cols=50 Identities=28% Similarity=0.749 Sum_probs=40.5
Q ss_pred CCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
.+...|.+|...+.-|.... |+|.||..|...|......||.|+..+..+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 35667999999888776665 999999999999988888999998766543
No 116
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.64 E-value=11 Score=27.87 Aligned_cols=24 Identities=33% Similarity=0.829 Sum_probs=18.7
Q ss_pred CCcccHhhHHHHHhCCCCCccccccc
Q 026976 198 GHTFCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 198 GH~FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
-|+||..|.+.. .++.||.|...+
T Consensus 28 EcTFCadCae~~--l~g~CPnCGGel 51 (84)
T COG3813 28 ECTFCADCAENR--LHGLCPNCGGEL 51 (84)
T ss_pred eeehhHhHHHHh--hcCcCCCCCchh
Confidence 378999999855 347999997654
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.02 E-value=16 Score=37.61 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=30.5
Q ss_pred CcccccCCCccccEEec--cCCcccHhhHHHHHhCCCCCcc
Q 026976 180 SMCCVCMGRKKGAAFIP--CGHTFCRVCSREMWLNRGSCPL 218 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~lp--CGH~FC~~Cl~~~l~~~~~CP~ 218 (230)
..|.+|-.......+-+ |||.-+..|+..|+.....||.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 36777777666654443 9999999999999998888876
No 118
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.03 E-value=10 Score=39.27 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.4
Q ss_pred eccCCcccHhhHHHHHhCCCCCcc
Q 026976 195 IPCGHTFCRVCSREMWLNRGSCPL 218 (230)
Q Consensus 195 lpCGH~FC~~Cl~~~l~~~~~CP~ 218 (230)
.-|+|+.+..|...|+.....||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCCcCCC
Confidence 369999999999999999888874
No 119
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.01 E-value=1.4 Score=32.12 Aligned_cols=42 Identities=21% Similarity=0.603 Sum_probs=19.7
Q ss_pred CcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 180 SMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
+.|+.|...+.-. =+|.+|..|-..+ .....||-|..++..+
T Consensus 2 ~~CP~C~~~L~~~----~~~~~C~~C~~~~-~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQ----GGHYHCEACQKDY-KKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEE----TTEEEETTT--EE-EEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEe----CCEEECccccccc-eecccCCCcccHHHHH
Confidence 4688887754321 1566777776543 2234788887776543
No 120
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=47.09 E-value=11 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=9.2
Q ss_pred cccHhhHHHHHhC
Q 026976 200 TFCRVCSREMWLN 212 (230)
Q Consensus 200 ~FC~~Cl~~~l~~ 212 (230)
.||+.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999764
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.68 E-value=11 Score=35.77 Aligned_cols=41 Identities=27% Similarity=0.593 Sum_probs=27.6
Q ss_pred CCcccccCCCc---c--ccEEeccCCcccHhhHHHHHhCCCCCccc
Q 026976 179 DSMCCVCMGRK---K--GAAFIPCGHTFCRVCSREMWLNRGSCPLC 219 (230)
Q Consensus 179 ~~~C~ICl~~~---~--~pv~lpCGH~FC~~Cl~~~l~~~~~CP~C 219 (230)
-..|+.|.... . +.+.-.|||-||+.|...|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 45688886543 2 23444599999999998887766655443
No 122
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=46.66 E-value=7.4 Score=30.94 Aligned_cols=13 Identities=46% Similarity=0.659 Sum_probs=7.1
Q ss_pred ccchhhhhCcccc
Q 026976 40 GRNLKERLGLKSM 52 (230)
Q Consensus 40 ~~~l~~~l~~~~~ 52 (230)
...||+.|||||+
T Consensus 78 KQlLKe~LgFkGY 90 (116)
T PF08853_consen 78 KQLLKEQLGFKGY 90 (116)
T ss_dssp TTHHHHTT-----
T ss_pred HHHHHHhcCCCce
Confidence 6789999999998
No 123
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.95 E-value=9.8 Score=34.47 Aligned_cols=48 Identities=19% Similarity=0.518 Sum_probs=34.0
Q ss_pred CCCCcccccCCCcccc----EEeccC-----CcccHhhHHHHHhCCC--------CCcccccccc
Q 026976 177 GNDSMCCVCMGRKKGA----AFIPCG-----HTFCRVCSREMWLNRG--------SCPLCNRSIL 224 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p----v~lpCG-----H~FC~~Cl~~~l~~~~--------~CP~CR~~i~ 224 (230)
+.+..|-||+..-.+- -+-||. |--+..|+.+|..++. .||.|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4577899999865543 223663 3378999999988532 8999987653
No 124
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.67 E-value=5.9 Score=32.60 Aligned_cols=44 Identities=34% Similarity=0.852 Sum_probs=25.2
Q ss_pred cCCCCcccccCCCccccEEeccCCc-------ccHhhHHHHHhC-CC---CCcccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHT-------FCRVCSREMWLN-RG---SCPLCNRS 222 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~-------FC~~Cl~~~l~~-~~---~CP~CR~~ 222 (230)
..++..|.||+....- --|||. ||..|--+.... .+ .|.+|+..
T Consensus 62 v~ddatC~IC~KTKFA---DG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFA---DGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccc---cccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 4678899999875331 147774 455554332222 11 67777754
No 125
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=42.54 E-value=15 Score=25.00 Aligned_cols=23 Identities=30% Similarity=0.996 Sum_probs=13.0
Q ss_pred ccCCcccHhhHHHHHhCCC--CCcccc
Q 026976 196 PCGHTFCRVCSREMWLNRG--SCPLCN 220 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~~--~CP~CR 220 (230)
.|++.||..|-. ..+.. +||-|.
T Consensus 26 ~C~~~FC~dCD~--fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDV--FIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHH--TTTTTS-SSSTT-
T ss_pred CCCCccccCcCh--hhhccccCCcCCC
Confidence 389999999953 33333 899884
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=41.98 E-value=29 Score=23.99 Aligned_cols=40 Identities=28% Similarity=0.662 Sum_probs=28.5
Q ss_pred CCcccccCCCc--ccc-EEec-cCCcccHhhHHHHHhCCCCCcc--cccc
Q 026976 179 DSMCCVCMGRK--KGA-AFIP-CGHTFCRVCSREMWLNRGSCPL--CNRS 222 (230)
Q Consensus 179 ~~~C~ICl~~~--~~p-v~lp-CGH~FC~~Cl~~~l~~~~~CP~--CR~~ 222 (230)
...|.+|-+.+ .+. |+-| ||-.+++.|.++. +.|-. |...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~----g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA----GGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhC----CceEeccCCCC
Confidence 45799999888 343 4445 9999999998754 66655 5443
No 127
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.46 E-value=8.8 Score=36.68 Aligned_cols=29 Identities=24% Similarity=0.561 Sum_probs=0.0
Q ss_pred EEeccCCcccHhhHHHHHh------CCCCCcccccccc
Q 026976 193 AFIPCGHTFCRVCSREMWL------NRGSCPLCNRSIL 224 (230)
Q Consensus 193 v~lpCGH~FC~~Cl~~~l~------~~~~CP~CR~~i~ 224 (230)
|++.|||++-+. .|.. ....||+||..-.
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCC
Confidence 678899986543 3422 1349999986543
No 128
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=39.87 E-value=5.1 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=8.9
Q ss_pred cHhhHHHHHhCCCCCcccccc
Q 026976 202 CRVCSREMWLNRGSCPLCNRS 222 (230)
Q Consensus 202 C~~Cl~~~l~~~~~CP~CR~~ 222 (230)
|..|-.+......-||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 333433333333455555443
No 129
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=38.59 E-value=29 Score=32.49 Aligned_cols=46 Identities=28% Similarity=0.769 Sum_probs=28.9
Q ss_pred CCCCcccccCCCcc-------------------ccEEeccCCcccHhhHHHHHhC----------CCCCccccccc
Q 026976 177 GNDSMCCVCMGRKK-------------------GAAFIPCGHTFCRVCSREMWLN----------RGSCPLCNRSI 223 (230)
Q Consensus 177 ~~~~~C~ICl~~~~-------------------~pv~lpCGH~FC~~Cl~~~l~~----------~~~CP~CR~~i 223 (230)
..+.+|++|+.+-. .-.|-||||+ |.+=...+|.+ +..||.|-..+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 34678999986421 1245699995 54444455553 23899997665
No 130
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=36.67 E-value=12 Score=28.08 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.8
Q ss_pred hhhCcccccccCCCCCcCCC
Q 026976 45 ERLGLKSMGCCGATCGFRPN 64 (230)
Q Consensus 45 ~~l~~~~~gc~g~~~~~~~~ 64 (230)
=|+++++-||+|-.+.+.-.
T Consensus 28 LRi~v~~gGCsG~~Y~~~ld 47 (92)
T TIGR01911 28 IRIHFAGMGCMGPMFNLIAD 47 (92)
T ss_pred EEEEEeCCCccCcccceEec
Confidence 46789999999999998753
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.62 E-value=28 Score=32.66 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=24.8
Q ss_pred CCcccccCCCcc-------------c-cEEeccCCcccHhhHHHHHh------CCCCCccccccc
Q 026976 179 DSMCCVCMGRKK-------------G-AAFIPCGHTFCRVCSREMWL------NRGSCPLCNRSI 223 (230)
Q Consensus 179 ~~~C~ICl~~~~-------------~-pv~lpCGH~FC~~Cl~~~l~------~~~~CP~CR~~i 223 (230)
.-.|+|=+..+. . -|.+.|||+--+. .|-. ....||+|+..-
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeeec
Confidence 557887665432 1 2678999983221 3332 234999998543
No 132
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=35.21 E-value=84 Score=28.19 Aligned_cols=23 Identities=30% Similarity=0.801 Sum_probs=18.7
Q ss_pred ccHhhHHHHHhCCCCCccccccc
Q 026976 201 FCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 201 FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
-|..|.....++...||+|...-
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcc
Confidence 57888888888888999997543
No 133
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=34.42 E-value=21 Score=31.48 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=33.5
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCcccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
.-..|.+|..+....+.- .|+-.++..|+..++.....||.|.
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchh
Confidence 345799999977654432 3666689999999999988999995
No 134
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.20 E-value=46 Score=24.78 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=19.3
Q ss_pred CCCcccccCCCcc----ccEEec---cCCcccHhhHHHHHhCC-CCCccccccccc
Q 026976 178 NDSMCCVCMGRKK----GAAFIP---CGHTFCRVCSREMWLNR-GSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~----~pv~lp---CGH~FC~~Cl~~~l~~~-~~CP~CR~~i~~ 225 (230)
....|.||=+..- .-+|+. |+--.|+.|.+--.+.. ..||.|+...+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3557999977432 235665 45557999986444443 499999977654
No 135
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.44 E-value=22 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=16.9
Q ss_pred cccCCCccccEEeccCCcccHh
Q 026976 183 CVCMGRKKGAAFIPCGHTFCRV 204 (230)
Q Consensus 183 ~ICl~~~~~pv~lpCGH~FC~~ 204 (230)
-||.+.-...+...|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3687777766677899999964
No 136
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.92 E-value=29 Score=32.54 Aligned_cols=42 Identities=24% Similarity=0.609 Sum_probs=27.1
Q ss_pred CCcccccCCCcccc--EEe-ccCCcccHhhHHHHHhCCCCCcccc
Q 026976 179 DSMCCVCMGRKKGA--AFI-PCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 179 ~~~C~ICl~~~~~p--v~l-pCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
...|-.|.+..... +.- .|.++||.+|-.-....-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 34599996654432 222 5999999999643322234899996
No 137
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.20 E-value=11 Score=24.25 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=16.8
Q ss_pred ccCCcccHhhHHHHHhCCCCCccccc-ccccc
Q 026976 196 PCGHTFCRVCSREMWLNRGSCPLCNR-SILEI 226 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~~~CP~CR~-~i~~i 226 (230)
.|||.|=...-..- .....||.|.. .+.++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~ 40 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRV 40 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEe
Confidence 57777654321111 22349999988 55554
No 138
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.05 E-value=13 Score=25.80 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=15.4
Q ss_pred CCCcccccCCCcccc---EE-eccCCcccHhhHHHH
Q 026976 178 NDSMCCVCMGRKKGA---AF-IPCGHTFCRVCSREM 209 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p---v~-lpCGH~FC~~Cl~~~ 209 (230)
+...|.+|...|.-- .. -.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 356799998877321 11 259999999998543
No 139
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.37 E-value=18 Score=24.29 Aligned_cols=11 Identities=55% Similarity=1.289 Sum_probs=5.4
Q ss_pred CCccccccccc
Q 026976 215 SCPLCNRSILE 225 (230)
Q Consensus 215 ~CP~CR~~i~~ 225 (230)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 88999887743
No 140
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.03 E-value=32 Score=22.72 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=20.4
Q ss_pred CcccccCCCccc----cEEeccCCcccHhhHHHHHh
Q 026976 180 SMCCVCMGRKKG----AAFIPCGHTFCRVCSREMWL 211 (230)
Q Consensus 180 ~~C~ICl~~~~~----pv~lpCGH~FC~~Cl~~~l~ 211 (230)
..|.+|...|.- ..-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 357788654432 12235999999999865433
No 141
>PLN02189 cellulose synthase
Probab=30.01 E-value=43 Score=35.86 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=31.9
Q ss_pred CCcccccCCCcc----ccEEec---cCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 179 DSMCCVCMGRKK----GAAFIP---CGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 179 ~~~C~ICl~~~~----~pv~lp---CGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
...|.||-+..- .-.++. |+--.|+.|.+--.+... .||.|+...+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 447999988632 235565 555589999954444333 99999987763
No 142
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.21 E-value=45 Score=25.82 Aligned_cols=43 Identities=23% Similarity=0.558 Sum_probs=25.2
Q ss_pred CCcccccCCCccccEE--------ecc---CCcccHhhHHHHHhC--------C-CCCccccc
Q 026976 179 DSMCCVCMGRKKGAAF--------IPC---GHTFCRVCSREMWLN--------R-GSCPLCNR 221 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~--------lpC---GH~FC~~Cl~~~l~~--------~-~~CP~CR~ 221 (230)
...|..|.....+..+ ..| .-.||..||...... . -.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4557777654333221 235 445999998655432 1 28999974
No 143
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=29.18 E-value=18 Score=33.72 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCCcccccCCCccccEEeccCCc-ccHhhHHHH-HhCCCCCcccccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREM-WLNRGSCPLCNRSILEILD 228 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~-l~~~~~CP~CR~~i~~il~ 228 (230)
....|.+|+.--......+|+|. ||-.|...- .+....|++|...+.+..+
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 46779999887777777899985 998886554 3333479999766655443
No 144
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=27.32 E-value=46 Score=29.46 Aligned_cols=47 Identities=17% Similarity=0.553 Sum_probs=33.2
Q ss_pred CCCcccccCCCccc----cEEeccCC-----cccHhhHHHHHhCC--CCCcccccccc
Q 026976 178 NDSMCCVCMGRKKG----AAFIPCGH-----TFCRVCSREMWLNR--GSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~----pv~lpCGH-----~FC~~Cl~~~l~~~--~~CP~CR~~i~ 224 (230)
+...|-||+..... +...||.- ..++.|+..|.... ..|.+|...+.
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 35779999885432 45667632 26899999998844 49999976543
No 145
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.03 E-value=8.7 Score=23.15 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=11.5
Q ss_pred CcccHhhHHHHHhCCC----CCccccc
Q 026976 199 HTFCRVCSREMWLNRG----SCPLCNR 221 (230)
Q Consensus 199 H~FC~~Cl~~~l~~~~----~CP~CR~ 221 (230)
|.||..|-........ .||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 6788888655444322 7787754
No 147
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=26.84 E-value=12 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.727 Sum_probs=13.5
Q ss_pred EEe-ccCCcccHhhHHHH
Q 026976 193 AFI-PCGHTFCRVCSREM 209 (230)
Q Consensus 193 v~l-pCGH~FC~~Cl~~~ 209 (230)
+.- .|+|.||..|...|
T Consensus 41 v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 41 VTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eECCCCCCeECCCCCCcC
Confidence 444 48999999998876
No 148
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.25 E-value=19 Score=32.15 Aligned_cols=44 Identities=30% Similarity=0.804 Sum_probs=33.6
Q ss_pred CCcccccCCCcc------ccEEec--------cCCcccHhhHHHHHhCCC-CCcccccc
Q 026976 179 DSMCCVCMGRKK------GAAFIP--------CGHTFCRVCSREMWLNRG-SCPLCNRS 222 (230)
Q Consensus 179 ~~~C~ICl~~~~------~pv~lp--------CGH~FC~~Cl~~~l~~~~-~CP~CR~~ 222 (230)
...|.+|...+. .|.++. |||..|..|+...+...+ .||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346888876554 244456 999999999999887765 99999864
No 149
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.21 E-value=34 Score=28.66 Aligned_cols=25 Identities=32% Similarity=0.757 Sum_probs=19.3
Q ss_pred CCcccHhhHHHHHhCCCCCccccccccc
Q 026976 198 GHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 198 GH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.+.||..|-.+... .||.|..+|..
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCCC
Confidence 45699999876533 69999998864
No 150
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=25.18 E-value=27 Score=23.35 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=20.9
Q ss_pred CCcccccCCCccccEEeccCCcccHhhHHHHHhC--CCCCcccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN--RGSCPLCNRSIL 224 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~--~~~CP~CR~~i~ 224 (230)
.+.||.|-..+... .++.-|...-... ...||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhhhh
Confidence 57799998843322 1223333322222 238999987554
No 151
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.75 E-value=35 Score=27.84 Aligned_cols=24 Identities=33% Similarity=0.881 Sum_probs=17.4
Q ss_pred CcccHhhHHHHHhCCCCCccccccccc
Q 026976 199 HTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 199 H~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
..||..|-+.-. ..||.|..+|..
T Consensus 28 eafcskcgeati---~qcp~csasirg 51 (160)
T COG4306 28 EAFCSKCGEATI---TQCPICSASIRG 51 (160)
T ss_pred HHHHhhhchHHH---hcCCccCCcccc
Confidence 348998876542 379999988864
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.33 E-value=48 Score=29.32 Aligned_cols=23 Identities=30% Similarity=0.821 Sum_probs=19.5
Q ss_pred ccHhhHHHHHhCCCCCccccccc
Q 026976 201 FCRVCSREMWLNRGSCPLCNRSI 223 (230)
Q Consensus 201 FC~~Cl~~~l~~~~~CP~CR~~i 223 (230)
-|..|...+.++...||+|...-
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccc
Confidence 68899998888888999998654
No 153
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=24.24 E-value=24 Score=35.37 Aligned_cols=22 Identities=32% Similarity=0.815 Sum_probs=16.7
Q ss_pred ccCCcccHhhHHHHHhCCCCCcccc
Q 026976 196 PCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
-|+++|+..|+.+. ...||.|-
T Consensus 536 ~C~avfH~~C~~r~---s~~CPrC~ 557 (580)
T KOG1829|consen 536 TCLAVFHKKCLRRK---SPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHhcc---CCCCCchH
Confidence 48999999998653 23599994
No 154
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=23.63 E-value=56 Score=26.93 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=32.9
Q ss_pred chhHHHHhhhcccchhHHHHHHHHHhh-cCCCCccccccccchhhhhCcccc
Q 026976 2 SQLRVILQESLDRERETITILALLREK-MDGVDSIRRGRGRNLKERLGLKSM 52 (230)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~r~~~~~l~~~l~~~~~ 52 (230)
+++.-+|+|.+-+-+-+.-||.||.++ =+++ ..=.|.+||||.|-
T Consensus 1 ~ee~~il~~alLsYPpA~rvL~lL~~~~~~~l------TKF~lG~~lGF~gE 46 (142)
T PF02980_consen 1 SEEKEILREALLSYPPAARVLSLLGENPGKHL------TKFELGEQLGFIGE 46 (142)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-----E------EHHHHHTTSSSTTS
T ss_pred CcHHHHHHHHHhcCCcHHHHHHHHHHhhhccc------hheehhhhcCcCCC
Confidence 356789999999999999999999864 2221 26679999999665
No 155
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=40 Score=34.70 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=15.3
Q ss_pred cHhhHHHHHhCC--------CCCcccccc
Q 026976 202 CRVCSREMWLNR--------GSCPLCNRS 222 (230)
Q Consensus 202 C~~Cl~~~l~~~--------~~CP~CR~~ 222 (230)
|..|.+++.... ..||.|.-.
T Consensus 154 C~~C~~EY~dP~nRRfHAQp~aCp~CGP~ 182 (750)
T COG0068 154 CPFCDKEYKDPLNRRFHAQPIACPKCGPH 182 (750)
T ss_pred CHHHHHHhcCccccccccccccCcccCCC
Confidence 999998875532 289999643
No 156
>PF14353 CpXC: CpXC protein
Probab=22.76 E-value=93 Score=24.24 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=21.8
Q ss_pred CcccccCCCccccEEeccCCcccHhhHHHHHhCC---CCCccccccc
Q 026976 180 SMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNR---GSCPLCNRSI 223 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~---~~CP~CR~~i 223 (230)
+.|+.|...+.-.+...-.-..=..=.++.+... ..||.|...+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 4688887766544332222111222233333322 2899998665
No 157
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.74 E-value=78 Score=25.05 Aligned_cols=41 Identities=24% Similarity=0.548 Sum_probs=28.1
Q ss_pred CcccccCCCccccE--------------EeccCCcccHhhHHHHHhCCCCCcccc
Q 026976 180 SMCCVCMGRKKGAA--------------FIPCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 180 ~~C~ICl~~~~~pv--------------~lpCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
..|--|+..+..+. --.|.+.||.+|-.-+...-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45999988765431 124899999999654433334899985
No 158
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.65 E-value=16 Score=20.98 Aligned_cols=7 Identities=43% Similarity=1.170 Sum_probs=3.3
Q ss_pred CCccccc
Q 026976 215 SCPLCNR 221 (230)
Q Consensus 215 ~CP~CR~ 221 (230)
-||.|-.
T Consensus 18 fC~~CG~ 24 (26)
T PF13248_consen 18 FCPNCGA 24 (26)
T ss_pred cChhhCC
Confidence 4555543
No 159
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.48 E-value=23 Score=34.02 Aligned_cols=45 Identities=20% Similarity=0.410 Sum_probs=36.5
Q ss_pred cccccCCCccc----cEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 181 MCCVCMGRKKG----AAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 181 ~C~ICl~~~~~----pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.|.||...++. ...+-|||.+...|+.+|+.....||.|+..+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 58888776543 3456799999999999999998899999987654
No 160
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.46 E-value=40 Score=25.93 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=11.3
Q ss_pred cccHhhHHHHHhC
Q 026976 200 TFCRVCSREMWLN 212 (230)
Q Consensus 200 ~FC~~Cl~~~l~~ 212 (230)
.||+.|+..|.+.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 161
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=22.30 E-value=13 Score=28.36 Aligned_cols=39 Identities=26% Similarity=0.772 Sum_probs=29.6
Q ss_pred CCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 179 DSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
...|.||......+ |..||..|...- +.|.+|.+.|...
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY~K----giCAMCGKki~nT 92 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAYKK----GICAMCGKKILNT 92 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhhhh----hHHHHhhhHhhcc
Confidence 34699998877766 656999998654 6899998877654
No 162
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=21.31 E-value=48 Score=26.07 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=34.7
Q ss_pred hhHHHHhhhcccchhHH--------HHHHHHHhhcCCCCccccccccchhhhhCcccccccCCCCCcCCC
Q 026976 3 QLRVILQESLDRERETI--------TILALLREKMDGVDSIRRGRGRNLKERLGLKSMGCCGATCGFRPN 64 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d~~~r~~~~~l~~~l~~~~~gc~g~~~~~~~~ 64 (230)
-||-.||+.|++--+.. -+|.-.-.-|+-.=...-+.++|+|++|.+ +.||--+|.|=..
T Consensus 11 tlG~~L~~tLDe~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~kmsfkg~L~t--Yr~CDnVWTFil~ 78 (109)
T KOG3463|consen 11 TLGNALQKTLDELVSDGVITPSLAKKVLEQFDKSINEALNDKVKNKMSFKGKLDT--YRFCDNVWTFILK 78 (109)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcccceeeeeccce--eeeccceeeEEEc
Confidence 36667888777543331 222222233333111111248888988888 8999999987554
No 163
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=20.55 E-value=71 Score=20.54 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=16.1
Q ss_pred cccccCCCccccEEeccCCcccHhh
Q 026976 181 MCCVCMGRKKGAAFIPCGHTFCRVC 205 (230)
Q Consensus 181 ~C~ICl~~~~~pv~lpCGH~FC~~C 205 (230)
.|..|......-+-|.|+|++|..-
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCC
Confidence 3777775444335567999988543
Done!