Query 026976
Match_columns 230
No_of_seqs 194 out of 1884
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2csy_A Zinc finger protein 183 99.4 5.1E-13 1.7E-17 96.7 4.7 52 175-226 11-62 (81)
2 2djb_A Polycomb group ring fin 99.3 6E-13 2.1E-17 94.4 4.7 52 175-226 11-63 (72)
3 2yur_A Retinoblastoma-binding 99.3 5.9E-13 2E-17 95.2 4.3 52 174-225 10-64 (74)
4 3ng2_A RNF4, snurf, ring finge 99.3 3.9E-13 1.3E-17 94.4 3.3 54 177-230 8-70 (71)
5 2ecy_A TNF receptor-associated 99.3 7.9E-13 2.7E-17 92.1 4.2 55 175-230 11-66 (66)
6 2xeu_A Ring finger protein 4; 99.3 5.1E-13 1.8E-17 91.7 3.2 53 178-230 2-63 (64)
7 2d8t_A Dactylidin, ring finger 99.3 6.8E-13 2.3E-17 93.9 3.3 49 177-225 13-61 (71)
8 3ztg_A E3 ubiquitin-protein li 99.3 1E-12 3.5E-17 97.0 4.4 52 173-224 7-61 (92)
9 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.7E-17 92.1 4.9 51 175-225 16-69 (73)
10 1t1h_A Gspef-atpub14, armadill 99.3 1.1E-12 3.8E-17 94.0 4.2 50 175-224 4-54 (78)
11 2vje_A E3 ubiquitin-protein li 99.3 7.8E-13 2.7E-17 92.6 2.8 53 178-230 7-62 (64)
12 2ecn_A Ring finger protein 141 99.3 8.1E-13 2.8E-17 92.9 2.7 55 175-230 11-65 (70)
13 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.6E-17 90.8 3.5 50 176-225 12-68 (69)
14 2vje_B MDM4 protein; proto-onc 99.3 9.1E-13 3.1E-17 92.0 2.6 53 178-230 6-61 (63)
15 4ayc_A E3 ubiquitin-protein li 99.3 1.5E-12 5E-17 103.7 3.9 48 178-225 52-99 (138)
16 1chc_A Equine herpes virus-1 r 99.3 2.2E-12 7.5E-17 90.0 4.0 52 178-229 4-56 (68)
17 2ecw_A Tripartite motif-contai 99.3 3.4E-12 1.2E-16 91.9 5.1 49 176-224 16-70 (85)
18 4ic3_A E3 ubiquitin-protein li 99.3 4.7E-13 1.6E-17 96.1 0.1 49 178-230 23-72 (74)
19 2ysj_A Tripartite motif-contai 99.3 5.6E-12 1.9E-16 86.9 5.3 45 175-219 16-63 (63)
20 2kiz_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 88.5 4.6 52 176-227 11-65 (69)
21 2egp_A Tripartite motif-contai 99.2 1.2E-12 3.9E-17 93.8 1.2 50 175-224 8-64 (79)
22 2ecv_A Tripartite motif-contai 99.2 4.1E-12 1.4E-16 91.5 4.2 49 176-224 16-70 (85)
23 2l0b_A E3 ubiquitin-protein li 99.2 7E-12 2.4E-16 93.1 5.4 51 175-225 36-89 (91)
24 2ct2_A Tripartite motif protei 99.2 5E-12 1.7E-16 92.1 4.5 50 175-224 11-67 (88)
25 2ecg_A Baculoviral IAP repeat- 99.2 6.1E-12 2.1E-16 90.3 4.8 49 178-230 24-73 (75)
26 3lrq_A E3 ubiquitin-protein li 99.2 5.2E-12 1.8E-16 95.4 4.2 47 178-224 21-69 (100)
27 2kr4_A Ubiquitin conjugation f 99.2 7.1E-12 2.4E-16 92.4 4.7 51 175-225 10-60 (85)
28 2ect_A Ring finger protein 126 99.2 6E-12 2.1E-16 90.2 4.1 51 176-226 12-65 (78)
29 2ep4_A Ring finger protein 24; 99.2 4.4E-12 1.5E-16 90.0 3.2 54 176-229 12-68 (74)
30 1iym_A EL5; ring-H2 finger, ub 99.2 8.2E-12 2.8E-16 83.6 4.0 48 177-224 3-54 (55)
31 2ckl_A Polycomb group ring fin 99.2 4.6E-12 1.6E-16 96.5 3.1 50 176-225 12-62 (108)
32 3fl2_A E3 ubiquitin-protein li 99.2 7E-12 2.4E-16 97.7 4.1 48 178-225 51-99 (124)
33 2ecm_A Ring finger and CHY zin 99.2 9.4E-12 3.2E-16 83.2 3.8 47 178-224 4-54 (55)
34 2ea5_A Cell growth regulator w 99.2 1.1E-11 3.7E-16 87.9 4.1 50 177-230 13-63 (68)
35 2kre_A Ubiquitin conjugation f 99.2 1.3E-11 4.3E-16 94.0 4.5 50 176-225 26-75 (100)
36 2y43_A E3 ubiquitin-protein li 99.2 4.3E-12 1.5E-16 95.1 1.9 48 178-225 21-69 (99)
37 2ecj_A Tripartite motif-contai 99.2 1.4E-11 4.7E-16 83.1 4.0 45 175-219 11-58 (58)
38 1wgm_A Ubiquitin conjugation f 99.2 1.7E-11 5.7E-16 93.0 4.5 50 176-225 19-69 (98)
39 1x4j_A Ring finger protein 38; 99.2 1.1E-11 3.9E-16 88.3 3.1 49 177-225 21-72 (75)
40 1g25_A CDK-activating kinase a 99.1 2.3E-11 8E-16 84.4 3.4 48 178-225 2-55 (65)
41 2yho_A E3 ubiquitin-protein li 99.1 3.8E-12 1.3E-16 92.8 -1.1 49 178-230 17-66 (79)
42 3hct_A TNF receptor-associated 99.1 2E-11 7E-16 94.5 2.8 51 175-225 14-65 (118)
43 3l11_A E3 ubiquitin-protein li 99.1 5.9E-12 2E-16 96.8 -0.3 48 178-225 14-62 (115)
44 1z6u_A NP95-like ring finger p 99.1 3.7E-11 1.3E-15 97.4 4.1 49 177-225 76-125 (150)
45 2ckl_B Ubiquitin ligase protei 99.1 1.9E-11 6.5E-16 99.7 2.3 48 178-225 53-102 (165)
46 1jm7_A BRCA1, breast cancer ty 99.1 3.4E-11 1.2E-15 91.5 3.5 48 178-225 20-70 (112)
47 2c2l_A CHIP, carboxy terminus 99.1 9.7E-11 3.3E-15 101.2 5.6 50 176-225 205-255 (281)
48 1e4u_A Transcriptional repress 99.1 9.9E-11 3.4E-15 85.3 4.4 51 176-226 8-63 (78)
49 3knv_A TNF receptor-associated 99.1 3.4E-11 1.2E-15 96.8 2.0 49 175-223 27-76 (141)
50 1rmd_A RAG1; V(D)J recombinati 99.1 3.2E-11 1.1E-15 92.8 1.7 48 178-225 22-70 (116)
51 1v87_A Deltex protein 2; ring- 99.1 1.2E-10 4E-15 89.1 4.8 49 178-226 24-95 (114)
52 4ap4_A E3 ubiquitin ligase RNF 99.1 6.5E-11 2.2E-15 91.6 3.3 48 178-225 6-60 (133)
53 1bor_A Transcription factor PM 99.0 3.1E-11 1.1E-15 82.0 1.2 45 177-224 4-48 (56)
54 1jm7_B BARD1, BRCA1-associated 99.0 1.3E-10 4.5E-15 89.8 3.7 45 178-224 21-66 (117)
55 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4E-15 90.2 2.7 54 177-230 70-132 (133)
56 2ecl_A Ring-box protein 2; RNF 99.0 2.9E-10 9.9E-15 82.7 4.1 48 178-225 14-76 (81)
57 2f42_A STIP1 homology and U-bo 99.0 2.8E-10 9.6E-15 95.3 4.1 53 173-225 100-153 (179)
58 2yu4_A E3 SUMO-protein ligase 99.0 2.3E-10 7.7E-15 85.6 3.1 46 177-222 5-59 (94)
59 2y1n_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 104.3 4.9 52 178-229 331-383 (389)
60 3hcs_A TNF receptor-associated 98.9 3.3E-10 1.1E-14 92.6 2.8 51 175-225 14-65 (170)
61 3t6p_A Baculoviral IAP repeat- 98.9 1.7E-10 5.6E-15 105.5 0.8 50 177-230 293-343 (345)
62 3dpl_R Ring-box protein 1; ubi 98.8 2.5E-09 8.6E-14 82.2 4.5 47 178-224 36-100 (106)
63 3htk_C E3 SUMO-protein ligase 98.7 1.1E-08 3.8E-13 90.2 3.7 48 177-224 179-231 (267)
64 2bay_A PRE-mRNA splicing facto 98.6 2.4E-08 8.1E-13 69.3 2.5 46 179-224 3-49 (61)
65 4a0k_B E3 ubiquitin-protein li 98.5 1.4E-08 4.9E-13 79.4 0.3 47 178-224 47-111 (117)
66 2d8s_A Cellular modulator of i 98.5 7.9E-08 2.7E-12 70.2 4.0 49 177-225 13-70 (80)
67 1wim_A KIAA0161 protein; ring 98.4 6.6E-08 2.3E-12 71.7 2.3 45 178-222 4-61 (94)
68 2ct0_A Non-SMC element 1 homol 98.2 1.4E-06 4.9E-11 62.8 4.8 48 178-225 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.0 4.8E-06 1.6E-10 63.3 3.6 47 181-227 3-51 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.8 4.4E-06 1.5E-10 76.4 1.5 49 177-225 306-373 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.6 3.1E-05 1.1E-09 53.3 2.6 47 178-224 5-58 (60)
72 3nw0_A Non-structural maintena 96.4 0.0044 1.5E-07 53.5 6.0 47 178-224 179-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0037 1.3E-07 46.1 2.5 33 178-210 2-37 (101)
74 2ko5_A Ring finger protein Z; 93.6 0.032 1.1E-06 41.8 2.3 50 178-229 27-77 (99)
75 2cs3_A Protein C14ORF4, MY039 93.5 0.021 7.1E-07 41.8 1.1 35 178-212 14-52 (93)
76 3m62_A Ubiquitin conjugation f 90.0 0.17 6E-06 51.5 3.5 51 175-225 887-938 (968)
77 1wil_A KIAA1045 protein; ring 82.2 1.4 4.9E-05 32.2 3.9 36 173-209 9-47 (89)
78 2lri_C Autoimmune regulator; Z 70.5 2.6 8.9E-05 28.9 2.5 46 176-222 9-59 (66)
79 2fiy_A Protein FDHE homolog; F 62.4 2 7E-05 38.2 0.7 46 177-222 180-231 (309)
80 1m3v_A FLIN4, fusion of the LI 61.1 5.4 0.00019 29.8 2.8 47 179-225 32-81 (122)
81 3i2d_A E3 SUMO-protein ligase 51.9 11 0.00038 34.4 3.7 48 176-223 246-298 (371)
82 2k16_A Transcription initiatio 51.7 3 0.0001 28.8 -0.1 49 178-226 17-72 (75)
83 1z60_A TFIIH basal transcripti 51.3 9.1 0.00031 25.9 2.3 40 180-219 16-58 (59)
84 4fo9_A E3 SUMO-protein ligase 48.6 14 0.00046 33.7 3.7 48 177-224 213-265 (360)
85 1weo_A Cellulose synthase, cat 46.8 21 0.00071 26.3 3.8 47 179-225 16-70 (93)
86 2l1n_A Uncharacterized protein 46.2 5.8 0.0002 30.6 0.8 13 40-52 80-92 (120)
87 1vfy_A Phosphatidylinositol-3- 43.6 11 0.00038 25.9 1.9 30 178-207 10-43 (73)
88 1rut_X Flinc4, fusion protein 43.3 8.9 0.00031 30.8 1.5 47 178-224 31-80 (188)
89 2xjy_A Rhombotin-2; oncoprotei 42.6 15 0.00051 27.3 2.6 47 178-224 28-77 (131)
90 1joc_A EEA1, early endosomal a 41.4 8.5 0.00029 29.5 1.0 30 179-208 69-102 (125)
91 2fqh_A Hypothetical protein TA 40.7 9.9 0.00034 28.4 1.3 13 48-60 14-28 (109)
92 2l5u_A Chromodomain-helicase-D 40.2 17 0.00059 24.1 2.4 45 177-222 9-58 (61)
93 3fyb_A Protein of unknown func 40.0 11 0.00038 28.2 1.4 13 200-212 41-53 (104)
94 2o35_A Hypothetical protein DU 39.9 11 0.00038 28.3 1.4 13 200-212 42-54 (105)
95 2jmo_A Parkin; IBR, E3 ligase, 39.8 2.6 8.9E-05 29.8 -2.0 20 196-217 55-74 (80)
96 3ql9_A Transcriptional regulat 39.6 18 0.00061 28.1 2.7 46 177-222 55-111 (129)
97 1z2q_A LM5-1; membrane protein 39.2 11 0.00038 26.7 1.3 31 178-208 20-54 (84)
98 2lbm_A Transcriptional regulat 39.0 22 0.00075 28.0 3.2 44 178-221 62-116 (142)
99 1mm2_A MI2-beta; PHD, zinc fin 38.7 7.5 0.00026 25.9 0.3 45 178-223 8-57 (61)
100 2yw8_A RUN and FYVE domain-con 38.1 13 0.00043 26.2 1.5 30 179-208 19-52 (82)
101 1dvp_A HRS, hepatocyte growth 38.1 10 0.00034 31.5 1.1 31 178-208 160-194 (220)
102 2xqn_T Testin, TESS; metal-bin 37.7 26 0.00088 25.8 3.3 44 179-224 30-74 (126)
103 3zyq_A Hepatocyte growth facto 36.9 12 0.00042 31.2 1.5 31 178-208 163-197 (226)
104 1x4u_A Zinc finger, FYVE domai 36.5 12 0.00042 26.4 1.2 29 179-207 14-46 (84)
105 2d8v_A Zinc finger FYVE domain 36.3 15 0.00052 25.5 1.5 31 179-210 8-39 (67)
106 1wfk_A Zinc finger, FYVE domai 35.0 12 0.00043 26.8 1.0 31 178-208 8-42 (88)
107 2lv9_A Histone-lysine N-methyl 33.8 13 0.00044 27.2 0.9 43 178-221 27-75 (98)
108 3t7l_A Zinc finger FYVE domain 33.1 15 0.00051 26.4 1.2 31 179-209 20-54 (90)
109 2rgt_A Fusion of LIM/homeobox 33.0 33 0.0011 26.8 3.4 45 178-224 32-76 (169)
110 2jtn_A LIM domain-binding prot 30.3 31 0.0011 27.3 2.8 45 178-224 86-130 (182)
111 1f62_A Transcription factor WS 30.2 18 0.00062 22.8 1.1 41 181-221 2-49 (51)
112 1y02_A CARP2, FYVE-ring finger 29.5 6 0.00021 30.4 -1.6 42 179-220 19-64 (120)
113 1wev_A Riken cDNA 1110020M19; 28.9 5.1 0.00017 28.9 -2.0 48 178-225 15-75 (88)
114 2yql_A PHD finger protein 21A; 28.4 7.5 0.00025 25.4 -1.1 44 177-221 7-55 (56)
115 2l43_A N-teminal domain from h 27.4 23 0.00078 25.4 1.3 46 177-222 23-75 (88)
116 3mpx_A FYVE, rhogef and PH dom 27.1 13 0.00045 33.3 0.0 45 179-223 375-430 (434)
117 1zbd_B Rabphilin-3A; G protein 26.6 20 0.00069 27.8 1.0 44 178-221 54-106 (134)
118 3mjh_B Early endosome antigen 26.5 14 0.00047 22.2 0.0 14 179-192 5-18 (34)
119 2puy_A PHD finger protein 21A; 25.1 8.3 0.00028 25.4 -1.3 45 178-223 4-53 (60)
120 1xwh_A Autoimmune regulator; P 23.5 10 0.00036 25.5 -1.1 44 178-222 7-55 (66)
121 2cup_A Skeletal muscle LIM-pro 23.3 24 0.00083 24.8 0.8 45 178-224 32-77 (101)
122 2gmg_A Hypothetical protein PF 23.0 12 0.00041 28.2 -0.9 25 193-222 69-93 (105)
123 2ku3_A Bromodomain-containing 21.9 23 0.00078 24.4 0.4 46 177-222 14-66 (71)
124 1fp0_A KAP-1 corepressor; PHD 21.4 30 0.001 25.1 0.9 45 177-222 23-72 (88)
125 1wd2_A Ariadne-1 protein homol 21.4 10 0.00034 25.4 -1.5 34 180-213 7-48 (60)
126 1x62_A C-terminal LIM domain p 20.5 57 0.002 21.9 2.3 31 180-210 42-73 (79)
127 2e6r_A Jumonji/ARID domain-con 20.2 11 0.00037 27.3 -1.7 45 177-221 14-65 (92)
128 1wen_A Inhibitor of growth fam 20.1 46 0.0016 22.8 1.7 45 178-224 15-67 (71)
129 4g9i_A Hydrogenase maturation 20.0 29 0.00099 34.4 0.9 22 202-223 159-188 (772)
130 2zet_C Melanophilin; complex, 20.0 34 0.0012 27.2 1.1 43 178-221 67-116 (153)
No 1
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.1e-13 Score=96.74 Aligned_cols=52 Identities=21% Similarity=0.524 Sum_probs=46.8
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
.....+.|+||++.+.+|+.++|||+||..|+..|+.....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccccc
Confidence 3456889999999999999999999999999999999888999999987643
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6e-13 Score=94.40 Aligned_cols=52 Identities=29% Similarity=0.654 Sum_probs=46.8
Q ss_pred ccCCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
.+.+.+.|+||++.+.+++.+ +|||+||..|+..|+.....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 456788999999999999997 9999999999999999888999999988653
No 3
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=5.9e-13 Score=95.16 Aligned_cols=52 Identities=27% Similarity=0.790 Sum_probs=45.7
Q ss_pred cccCCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCC--CCCccccccccc
Q 026976 174 EKAGNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNR--GSCPLCNRSILE 225 (230)
Q Consensus 174 e~~~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~--~~CP~CR~~i~~ 225 (230)
+.+.+.+.|+||++.+.+|+.++ |||+||..|+..|+... ..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34567889999999999999999 99999999999999865 599999997644
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.34 E-value=3.9e-13 Score=94.38 Aligned_cols=54 Identities=30% Similarity=0.714 Sum_probs=47.4
Q ss_pred CCCCcccccCCCcccc-------EEeccCCcccHhhHHHHHhCCCCCcccccccc--cccccC
Q 026976 177 GNDSMCCVCMGRKKGA-------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL--EILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p-------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~--~il~If 230 (230)
.+...|+||++.+.++ +.++|||+||..|+.+|+.....||+||..+. ++.+||
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 4678899999999887 88999999999999999998899999999875 455555
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.9e-13 Score=92.15 Aligned_cols=55 Identities=24% Similarity=0.550 Sum_probs=47.6
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHh-CCCCCcccccccccccccC
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWL-NRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~-~~~~CP~CR~~i~~il~If 230 (230)
.+.+.+.|+||++.+.+++.++|||+||..|+..|+. ....||+||..+..- +||
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~if 66 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD-KVF 66 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT-TCC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh-hcC
Confidence 3567889999999999999999999999999999995 455999999998764 565
No 6
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=5.1e-13 Score=91.66 Aligned_cols=53 Identities=30% Similarity=0.701 Sum_probs=46.6
Q ss_pred CCCcccccCCCcccc-------EEeccCCcccHhhHHHHHhCCCCCcccccccc--cccccC
Q 026976 178 NDSMCCVCMGRKKGA-------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL--EILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p-------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~--~il~If 230 (230)
+...|+||++.+.++ +.++|||.||..|+.+|+.....||+||..+. ++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 467899999998876 88899999999999999998889999999886 566665
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.8e-13 Score=93.87 Aligned_cols=49 Identities=27% Similarity=0.638 Sum_probs=45.1
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.+...|+||++.+.+++.++|||.||..|+..|+.....||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3578899999999999999999999999999999988899999998864
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=97.04 Aligned_cols=52 Identities=27% Similarity=0.806 Sum_probs=45.7
Q ss_pred ccccCCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCC--CCCcccccccc
Q 026976 173 EEKAGNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNR--GSCPLCNRSIL 224 (230)
Q Consensus 173 ~e~~~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~--~~CP~CR~~i~ 224 (230)
.+.+.+.+.|+||++.+.+|+.++ |||+||..|+..|+... ..||+||..+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345677899999999999999999 99999999999999754 49999999863
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=92.13 Aligned_cols=51 Identities=29% Similarity=0.700 Sum_probs=44.9
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHh---CCCCCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWL---NRGSCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~---~~~~CP~CR~~i~~ 225 (230)
.+.+.+.|+||++.+.+++.++|||+||..|+..|+. ....||+||..+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3457889999999999999999999999999999987 34499999998754
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.31 E-value=1.1e-12 Score=94.05 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=45.4
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC-CCCCcccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN-RGSCPLCNRSIL 224 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~ 224 (230)
.+.+.+.|+||++.+.+|+.++|||+||+.|+.+|+.. ...||+||..+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34578999999999999999999999999999999987 569999999875
No 11
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.30 E-value=7.8e-13 Score=92.63 Aligned_cols=53 Identities=26% Similarity=0.688 Sum_probs=49.2
Q ss_pred CCCcccccCCCccccEEe--ccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 178 NDSMCCVCMGRKKGAAFI--PCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l--pCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
++..|.||++.+.+++++ ||||. ||..|+..|+.....||+||..|..+++||
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 456799999999999988 99999 899999999988889999999999999987
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=8.1e-13 Score=92.88 Aligned_cols=55 Identities=24% Similarity=0.747 Sum_probs=48.3
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
...+...|+||++.+.+ +.++|||.||..|+.+|+.....||+||..+.....+|
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34567899999999999 89999999999999999998889999999988765554
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=90.82 Aligned_cols=50 Identities=30% Similarity=0.734 Sum_probs=44.8
Q ss_pred cCCCCcccccCCCcccc-------EEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGA-------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~p-------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
..+...|+||++.+.++ +.++|||.||..|+..|+.....||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34678899999999887 889999999999999999988899999998764
No 14
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.28 E-value=9.1e-13 Score=92.03 Aligned_cols=53 Identities=28% Similarity=0.680 Sum_probs=48.8
Q ss_pred CCCcccccCCCccccEEe--ccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 178 NDSMCCVCMGRKKGAAFI--PCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l--pCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
....|.||++.+.+++++ ||||. ||..|+..++.....||+||.+|..+++||
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 356799999999999888 99998 999999999988889999999999999987
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=1.5e-12 Score=103.74 Aligned_cols=48 Identities=29% Similarity=0.724 Sum_probs=44.6
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+++.|+||++.+.+|+.+||||+||..|+..|+.....||+||..|..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 467899999999999999999999999999999988899999998854
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=2.2e-12 Score=90.03 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=46.1
Q ss_pred CCCcccccCCCcccc-EEeccCCcccHhhHHHHHhCCCCCccccccccccccc
Q 026976 178 NDSMCCVCMGRKKGA-AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILDI 229 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p-v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il~I 229 (230)
....|+||++.+.++ +.++|||.||..|+..|+.....||+||..+..+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 467899999999986 7889999999999999999888999999998876543
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=3.4e-12 Score=91.94 Aligned_cols=49 Identities=27% Similarity=0.728 Sum_probs=44.5
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC------CCCCcccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN------RGSCPLCNRSIL 224 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~------~~~CP~CR~~i~ 224 (230)
+.+.+.|+||++.+.+++.++|||+||..|+..|+.. ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4568899999999999999999999999999999987 559999998875
No 18
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.26 E-value=4.7e-13 Score=96.11 Aligned_cols=49 Identities=33% Similarity=0.922 Sum_probs=45.9
Q ss_pred CCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
+...|+||++.+.+++++||||. ||..|+..| ..||+||..|...++||
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 46789999999999999999999 999999887 89999999999999987
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.6e-12 Score=86.88 Aligned_cols=45 Identities=31% Similarity=0.758 Sum_probs=40.4
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC---CCCCccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN---RGSCPLC 219 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~---~~~CP~C 219 (230)
.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+.. ...||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678899999999999999999999999999999983 4499998
No 20
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=88.54 Aligned_cols=52 Identities=25% Similarity=0.680 Sum_probs=44.9
Q ss_pred cCCCCcccccCCCcc---ccEEeccCCcccHhhHHHHHhCCCCCccccccccccc
Q 026976 176 AGNDSMCCVCMGRKK---GAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEIL 227 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~---~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il 227 (230)
......|+||++.+. .++.++|||.||..|+..|+.....||+||..|...+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 456778999998774 4577899999999999999999889999999987654
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-12 Score=93.77 Aligned_cols=50 Identities=26% Similarity=0.672 Sum_probs=45.0
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC-------CCCCcccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN-------RGSCPLCNRSIL 224 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~-------~~~CP~CR~~i~ 224 (230)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45678899999999999999999999999999999886 459999998874
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.1e-12 Score=91.49 Aligned_cols=49 Identities=27% Similarity=0.701 Sum_probs=44.6
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhC------CCCCcccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN------RGSCPLCNRSIL 224 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~------~~~CP~CR~~i~ 224 (230)
+.+.+.|+||++.+.+++.++|||+||..|+..|+.. ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4568899999999999999999999999999999887 669999998876
No 23
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=7e-12 Score=93.13 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=44.7
Q ss_pred ccCCCCcccccCCCccc---cEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKG---AAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~---pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.......|+||++.+.. ++.++|||.||..|+..|+.....||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567889999998876 7789999999999999999988899999998764
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=92.06 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=44.6
Q ss_pred ccCCCCcccccCCCccc----cEEeccCCcccHhhHHHHHhCC---CCCcccccccc
Q 026976 175 KAGNDSMCCVCMGRKKG----AAFIPCGHTFCRVCSREMWLNR---GSCPLCNRSIL 224 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~----pv~lpCGH~FC~~Cl~~~l~~~---~~CP~CR~~i~ 224 (230)
.+.+.+.|+||++.+.+ ++.++|||+||..|+..|+... ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 45678899999999998 9999999999999999999876 59999998764
No 25
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.1e-12 Score=90.27 Aligned_cols=49 Identities=35% Similarity=0.956 Sum_probs=44.6
Q ss_pred CCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
+...|+||++.+.+++++||||. ||..|+... ..||+||..|...++||
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEe
Confidence 35679999999999999999999 999999653 79999999999999998
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=5.2e-12 Score=95.37 Aligned_cols=47 Identities=23% Similarity=0.627 Sum_probs=43.5
Q ss_pred CCCcccccCCCccccEE-eccCCcccHhhHHHHHhCC-CCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAF-IPCGHTFCRVCSREMWLNR-GSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~-lpCGH~FC~~Cl~~~l~~~-~~CP~CR~~i~ 224 (230)
+.+.|+||++.+.+|+. ++|||+||..|+..|+... ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 47789999999999999 9999999999999999987 59999998874
No 27
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.22 E-value=7.1e-12 Score=92.42 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=46.6
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.+.+.+.|+||++.+.+||.++|||+||+.||.+|+.....||+|+..+..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 356789999999999999999999999999999999988899999988753
No 28
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.22 E-value=6e-12 Score=90.16 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=43.8
Q ss_pred cCCCCcccccCCCcccc---EEeccCCcccHhhHHHHHhCCCCCcccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGA---AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEI 226 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~p---v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~i 226 (230)
......|+||++.+.++ +.++|+|.||..|+.+|+.....||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 45678899999988654 5679999999999999999888999999988653
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.4e-12 Score=90.03 Aligned_cols=54 Identities=31% Similarity=0.709 Sum_probs=45.7
Q ss_pred cCCCCcccccCCCcccc---EEeccCCcccHhhHHHHHhCCCCCccccccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGA---AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILDI 229 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~p---v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~il~I 229 (230)
......|+||++.+.++ +.++|+|.||..|+.+|+.....||+||..|..+.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 45677899999998654 4459999999999999999888999999999876543
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.21 E-value=8.2e-12 Score=83.57 Aligned_cols=48 Identities=31% Similarity=0.827 Sum_probs=42.4
Q ss_pred CCCCcccccCCCccc---cEEec-cCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 177 GNDSMCCVCMGRKKG---AAFIP-CGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~---pv~lp-CGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.+...|+||++.+.+ ++.++ |||.||..|+.+|+.....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 357789999999877 67887 9999999999999998889999998763
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=4.6e-12 Score=96.50 Aligned_cols=50 Identities=28% Similarity=0.665 Sum_probs=45.7
Q ss_pred cCCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 34688899999999999998 999999999999999988999999998864
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.20 E-value=7e-12 Score=97.72 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=43.7
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4678999999999999999999999999999998555 99999998865
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.20 E-value=9.4e-12 Score=83.17 Aligned_cols=47 Identities=34% Similarity=0.736 Sum_probs=42.1
Q ss_pred CCCcccccCCCccc----cEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKG----AAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~----pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
+...|+||++.+.+ ++.++|||.||..|+.+|+.....||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999998865 788899999999999999998899999998874
No 34
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=87.95 Aligned_cols=50 Identities=28% Similarity=0.738 Sum_probs=45.7
Q ss_pred CCCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
.+...|.||++.+.+++++||||. ||..|+... ..||+||..|..+++||
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEee
Confidence 357789999999999999999999 999999853 79999999999999998
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.18 E-value=1.3e-11 Score=93.99 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=46.2
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+.+.+.|+||++++.+||.++|||+||+.||..|+.....||+|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45789999999999999999999999999999999988899999988753
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=4.3e-12 Score=95.13 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=44.0
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 467899999999999998 899999999999999988899999988763
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=83.09 Aligned_cols=45 Identities=33% Similarity=0.922 Sum_probs=39.5
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHh---CCCCCccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWL---NRGSCPLC 219 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~---~~~~CP~C 219 (230)
.+.+...|+||++.+.+++.++|||+||..|+..|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3557889999999999999999999999999999955 34599998
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=1.7e-11 Score=92.97 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=46.0
Q ss_pred cCCCCcccccCCCccccEEeccC-CcccHhhHHHHHhCCCCCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCG-HTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCG-H~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+.+++.|+||++++.+||.++|| |+||+.||.+|+.....||+|+..+..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45689999999999999999999 999999999999988899999988753
No 39
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=88.29 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=43.4
Q ss_pred CCCCcccccCCCcccc---EEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 177 GNDSMCCVCMGRKKGA---AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p---v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.+...|+||++.+.++ +.++|+|.||..|+..|+.....||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4577899999988776 778999999999999999988999999998754
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.3e-11 Score=84.36 Aligned_cols=48 Identities=27% Similarity=0.763 Sum_probs=40.6
Q ss_pred CCCcccccCC-Ccccc----EEeccCCcccHhhHHHHHhCC-CCCccccccccc
Q 026976 178 NDSMCCVCMG-RKKGA----AFIPCGHTFCRVCSREMWLNR-GSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~-~~~~p----v~lpCGH~FC~~Cl~~~l~~~-~~CP~CR~~i~~ 225 (230)
++..|+||++ .+.++ +.++|||+||..|+.+|+... ..||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3678999999 88887 568999999999999997654 589999998853
No 41
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.12 E-value=3.8e-12 Score=92.80 Aligned_cols=49 Identities=31% Similarity=0.941 Sum_probs=45.0
Q ss_pred CCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
+...|.||++.+.+++++||||. ||..|+..+ ..||+||..|...++||
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEE
Confidence 46689999999999999999999 999999876 49999999999999887
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=2e-11 Score=94.51 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=45.9
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3556789999999999999999999999999999998766 99999998865
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=5.9e-12 Score=96.82 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=43.0
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhC-CCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN-RGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~~ 225 (230)
+++.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 46789999999999999999999999999999876 4599999998753
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.10 E-value=3.7e-11 Score=97.43 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=44.5
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
.+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 35678999999999999999999999999999998765 89999998864
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=1.9e-11 Score=99.69 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=43.2
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhC-CCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLN-RGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~~ 225 (230)
+.+.|+||++.+.+|+.+ +|||+||..|+..|+.. ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 466899999999999988 99999999999999997 5699999998843
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=3.4e-11 Score=91.46 Aligned_cols=48 Identities=27% Similarity=0.705 Sum_probs=43.0
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC---CCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG---SCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~---~CP~CR~~i~~ 225 (230)
+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4678999999999999999999999999999998654 89999988753
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=9.7e-11 Score=101.18 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred cCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
....+.|+||++.+.+||.++|||+||+.||..|+.... .||+|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 457889999999999999999999999999999998654 59999998853
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.06 E-value=9.9e-11 Score=85.29 Aligned_cols=51 Identities=29% Similarity=0.744 Sum_probs=41.8
Q ss_pred cCCCCcccccCCCcc--ccEEec--cCCcccHhhHHHHHhC-CCCCcccccccccc
Q 026976 176 AGNDSMCCVCMGRKK--GAAFIP--CGHTFCRVCSREMWLN-RGSCPLCNRSILEI 226 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~--~pv~lp--CGH~FC~~Cl~~~l~~-~~~CP~CR~~i~~i 226 (230)
+.+++.|+||++.+. +++++| |||.||..|+..++.. ...||.||..+..-
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 457889999999773 456666 9999999999999864 45999999988654
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.06 E-value=3.4e-11 Score=96.78 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=44.5
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSI 223 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i 223 (230)
.+.+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567889999999999999999999999999999998665 999999865
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=3.2e-11 Score=92.80 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=43.7
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhC-CCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLN-RGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~~ 225 (230)
+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46789999999999999999999999999999987 5699999998754
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.05 E-value=1.2e-10 Score=89.13 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=40.2
Q ss_pred CCCcccccCCCccccE------------------EeccCCcccHhhHHHHHh-----CCCCCcccccccccc
Q 026976 178 NDSMCCVCMGRKKGAA------------------FIPCGHTFCRVCSREMWL-----NRGSCPLCNRSILEI 226 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv------------------~lpCGH~FC~~Cl~~~l~-----~~~~CP~CR~~i~~i 226 (230)
.+..|+||++.+..+. .++|+|.||..||..|+. ....||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999986543 679999999999999994 456999999887543
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6.5e-11 Score=91.65 Aligned_cols=48 Identities=31% Similarity=0.760 Sum_probs=44.3
Q ss_pred CCCcccccCCCcccc-------EEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGA-------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p-------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
+.+.|+||++.+.++ +.++|||+||..|+.+|+.....||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 578899999999988 999999999999999999998999999998753
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=3.1e-11 Score=82.01 Aligned_cols=45 Identities=27% Similarity=0.601 Sum_probs=39.7
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 35788999999999999999999999999876 3458999998875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=89.80 Aligned_cols=45 Identities=22% Similarity=0.587 Sum_probs=41.6
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
+.+.|+||++.+.+|+.+ +|||+||..|+..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 478899999999999999 9999999999999977 78999998874
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.2e-10 Score=90.20 Aligned_cols=54 Identities=30% Similarity=0.714 Sum_probs=46.7
Q ss_pred CCCCcccccCCCcccc-------EEeccCCcccHhhHHHHHhCCCCCcccccccc--cccccC
Q 026976 177 GNDSMCCVCMGRKKGA-------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL--EILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~p-------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~--~il~If 230 (230)
.+...|+||++.+.++ +.++|||.||..|+.+|+...+.||+||..+. ++.++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4577899999998876 88899999999999999999999999999885 445555
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=82.73 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=40.3
Q ss_pred CCCcccccCCCccc--------------cEEec-cCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 178 NDSMCCVCMGRKKG--------------AAFIP-CGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~--------------pv~lp-CGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
++..|+||++.+.+ .+.++ |+|.||..|+.+|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45669999988865 45555 99999999999999999999999998753
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.97 E-value=2.8e-10 Score=95.28 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=46.7
Q ss_pred ccccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 173 EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 173 ~e~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
...+.+.+.|+||++.+.+||.+||||+||+.||..|+...+ .||+|+.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345678899999999999999999999999999999998654 69999988753
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.3e-10 Score=85.65 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=41.0
Q ss_pred CCCCcccccCCCccccEEec-cCCcccHhhHHHHHhCC------CCCcc--cccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNR------GSCPL--CNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~------~~CP~--CR~~ 222 (230)
...+.|+||++.+.+||.++ |||+||+.||..|+... ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999999999999996 99999999999999864 39999 9854
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=4.2e-10 Score=104.27 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=46.2
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHh-CCCCCccccccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWL-NRGSCPLCNRSILEILDI 229 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~-~~~~CP~CR~~i~~il~I 229 (230)
....|+||++.+.+++.+||||.||..|+..|+. ....||+||..+.....|
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4578999999999999999999999999999998 567999999998776544
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.92 E-value=3.3e-10 Score=92.63 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=45.7
Q ss_pred ccCCCCcccccCCCccccEEeccCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
.+.+.+.|+||++.+.+|+.++|||+||..|+.+|+.... .||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3567889999999999999999999999999999998654 99999988765
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.91 E-value=1.7e-10 Score=105.49 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=46.8
Q ss_pred CCCCcccccCCCccccEEeccCCc-ccHhhHHHHHhCCCCCcccccccccccccC
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHT-FCRVCSREMWLNRGSCPLCNRSILEILDIF 230 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~-FC~~Cl~~~l~~~~~CP~CR~~i~~il~If 230 (230)
.+...|+||++.+.+++++||||. ||..|+..| ..||+||..|..+++||
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEee
Confidence 357899999999999999999999 999999877 78999999999999998
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.82 E-value=2.5e-09 Score=82.18 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=40.2
Q ss_pred CCCcccccCCCcccc------------------EEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGA------------------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p------------------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
....|+||++.+.++ +.++|+|.||..||..|+..+..||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456799999987644 45789999999999999999899999999853
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.1e-08 Score=90.24 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCC--CCcc--cccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRG--SCPL--CNRSIL 224 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~--~CP~--CR~~i~ 224 (230)
...+.|+||++++.+||.. .|||+||+.||..|+...+ .||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4688999999999999985 8999999999999998653 8999 998764
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.55 E-value=2.4e-08 Score=69.32 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 179 DSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.+.|+||++.+.+||.+ +|||+|++.||.+|+..++.||+++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 57899999999999999 89999999999999998889999998874
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.51 E-value=1.4e-08 Score=79.44 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=0.9
Q ss_pred CCCcccccCCCcccc------------------EEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGA------------------AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p------------------v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
....|+||++.+.++ +.++|+|.||..||.+|+..+..||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 345799999987652 22489999999999999999899999998853
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=7.9e-08 Score=70.18 Aligned_cols=49 Identities=18% Similarity=0.573 Sum_probs=40.5
Q ss_pred CCCCcccccCCCc--cccEEeccC-----CcccHhhHHHHHhCCC--CCccccccccc
Q 026976 177 GNDSMCCVCMGRK--KGAAFIPCG-----HTFCRVCSREMWLNRG--SCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~--~~pv~lpCG-----H~FC~~Cl~~~l~~~~--~CP~CR~~i~~ 225 (230)
.+...|.||++.+ .+++.+||. |.|+..||.+|+.... .||+||..+.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3466899999876 356778996 9999999999998764 99999988754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=6.6e-08 Score=71.66 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=37.3
Q ss_pred CCCcccccCCCccccEEe---ccCCcccHhhHHHHHhCC--------CCCcc--cccc
Q 026976 178 NDSMCCVCMGRKKGAAFI---PCGHTFCRVCSREMWLNR--------GSCPL--CNRS 222 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l---pCGH~FC~~Cl~~~l~~~--------~~CP~--CR~~ 222 (230)
..+.|+||++.+..+.++ +|||.||..|+..++... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999998877554 799999999999998741 28999 9987
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=62.80 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=39.8
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCC--CCCccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNR--GSCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~--~~CP~CR~~i~~ 225 (230)
....|.||.+.+.....- .|+|.|+..|+.+|++.. ..||+||..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 456799999988755444 699999999999999987 699999988653
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.96 E-value=4.8e-06 Score=63.32 Aligned_cols=47 Identities=30% Similarity=0.563 Sum_probs=37.3
Q ss_pred cccccCCCcc-ccEEeccCCcccHhhHHHHHhC-CCCCccccccccccc
Q 026976 181 MCCVCMGRKK-GAAFIPCGHTFCRVCSREMWLN-RGSCPLCNRSILEIL 227 (230)
Q Consensus 181 ~C~ICl~~~~-~pv~lpCGH~FC~~Cl~~~l~~-~~~CP~CR~~i~~il 227 (230)
.|.+|--.+. -..++||.|+||..|+..|.+. .+.||.|+.+|..+-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 5788855443 3467899999999999998764 569999999987764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.82 E-value=4.4e-06 Score=76.38 Aligned_cols=49 Identities=20% Similarity=0.556 Sum_probs=38.2
Q ss_pred CCCCcccccCCCccccE--------EeccCCcccHhhHHHHHhCC-----------CCCccccccccc
Q 026976 177 GNDSMCCVCMGRKKGAA--------FIPCGHTFCRVCSREMWLNR-----------GSCPLCNRSILE 225 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv--------~lpCGH~FC~~Cl~~~l~~~-----------~~CP~CR~~i~~ 225 (230)
.....|+||+..+.+.- ...|+|.|+..|+.+|+... +.||+||.+|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45678999999776511 13699999999999999742 489999988754
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.58 E-value=3.1e-05 Score=53.27 Aligned_cols=47 Identities=19% Similarity=0.482 Sum_probs=37.6
Q ss_pred CCCcccccCCCccccEEeccC--C---cccHhhHHHHHhC--CCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCG--H---TFCRVCSREMWLN--RGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCG--H---~FC~~Cl~~~l~~--~~~CP~CR~~i~ 224 (230)
+...|.||++...++..+||. | .|+..|+.+|+.. ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 466799999876666678864 4 6999999999985 459999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.42 E-value=0.0044 Score=53.48 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=39.0
Q ss_pred CCCcccccCCCccccEEec-cCCcccHhhHHHHHhCCC--CCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIP-CGHTFCRVCSREMWLNRG--SCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lp-CGH~FC~~Cl~~~l~~~~--~CP~CR~~i~ 224 (230)
.-..|.+|.+.....+.-+ |+|.|+..|+..|++... .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4667999999877666555 999999999999998755 9999998754
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.91 E-value=0.0037 Score=46.13 Aligned_cols=33 Identities=18% Similarity=0.591 Sum_probs=27.4
Q ss_pred CCCcccccCCC-ccccEE--eccCCcccHhhHHHHH
Q 026976 178 NDSMCCVCMGR-KKGAAF--IPCGHTFCRVCSREMW 210 (230)
Q Consensus 178 ~~~~C~ICl~~-~~~pv~--lpCGH~FC~~Cl~~~l 210 (230)
+++.|.||.+. +.+++. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 36789999975 677777 8999999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.64 E-value=0.032 Score=41.83 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=40.9
Q ss_pred CCCcccccCCCccccEEeccC-CcccHhhHHHHHhCCCCCccccccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCG-HTFCRVCSREMWLNRGSCPLCNRSILEILDI 229 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCG-H~FC~~Cl~~~l~~~~~CP~CR~~i~~il~I 229 (230)
..+.|..|--..++ .+.|. |.+|..|+..++.....||+|..++...+++
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 46679999876664 56775 8899999999999999999999998776653
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.55 E-value=0.021 Score=41.76 Aligned_cols=35 Identities=34% Similarity=0.778 Sum_probs=29.5
Q ss_pred CCCcccccCCCccccEEecc----CCcccHhhHHHHHhC
Q 026976 178 NDSMCCVCMGRKKGAAFIPC----GHTFCRVCSREMWLN 212 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpC----GH~FC~~Cl~~~l~~ 212 (230)
..+.|.+|.+.+.+.-++.| .|.||..|.....+.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 46789999999999877777 688999999887764
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.01 E-value=0.17 Score=51.52 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=46.1
Q ss_pred ccCCCCcccccCCCccccEEeccC-CcccHhhHHHHHhCCCCCccccccccc
Q 026976 175 KAGNDSMCCVCMGRKKGAAFIPCG-HTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 175 ~~~~~~~C~ICl~~~~~pv~lpCG-H~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
.+.+.+.|+|-.+.+.+||.+|-| ++|=+.+|.+|+..+.+||.-|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 467789999999999999999998 589999999999988899999988754
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.21 E-value=1.4 Score=32.21 Aligned_cols=36 Identities=36% Similarity=0.667 Sum_probs=26.3
Q ss_pred ccccCCCCcccccCCCccccEEec---cCCcccHhhHHHH
Q 026976 173 EEKAGNDSMCCVCMGRKKGAAFIP---CGHTFCRVCSREM 209 (230)
Q Consensus 173 ~e~~~~~~~C~ICl~~~~~pv~lp---CGH~FC~~Cl~~~ 209 (230)
.+.+..+..|.||-....+ ..+| |+-+|+..|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 3445678889999754433 4556 6788999999997
No 78
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=70.54 E-value=2.6 Score=28.94 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=30.7
Q ss_pred cCCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCC----CCcccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRG----SCPLCNRS 222 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~----~CP~CR~~ 222 (230)
......|.||.+.- +.+.- .|...|+..|+...+.... .|+.|...
T Consensus 9 ~~~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34566799998643 22222 4788899999976555322 99999754
No 79
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=62.37 E-value=2 Score=38.19 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=35.4
Q ss_pred CCCCcccccCCCccccEEe----ccC--CcccHhhHHHHHhCCCCCcccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI----PCG--HTFCRVCSREMWLNRGSCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l----pCG--H~FC~~Cl~~~l~~~~~CP~CR~~ 222 (230)
+....|+||=....-.++. .=| +.+|..|-..|...+..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6778999998877655443 134 347999999998888899999865
No 80
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=61.06 E-value=5.4 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=35.2
Q ss_pred CCcccccCCCcc---ccEEeccCCcccHhhHHHHHhCCCCCccccccccc
Q 026976 179 DSMCCVCMGRKK---GAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILE 225 (230)
Q Consensus 179 ~~~C~ICl~~~~---~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~~ 225 (230)
-+.|..|...+. ...+..=|..||..|..+.......|..|...|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 357888988775 23444567789999998876655589999988863
No 81
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=51.87 E-value=11 Score=34.37 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=33.1
Q ss_pred cCCCCcccccCCCccccEEe-ccCCcccHhhH--HHHHhCC--CCCccccccc
Q 026976 176 AGNDSMCCVCMGRKKGAAFI-PCGHTFCRVCS--REMWLNR--GSCPLCNRSI 223 (230)
Q Consensus 176 ~~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl--~~~l~~~--~~CP~CR~~i 223 (230)
..-.+.|++-...+..|+.- .|.|.-|..-. ..+.... -.||+|.+.+
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 34567899998888888765 59999775542 2222222 2999999776
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.67 E-value=3 Score=28.81 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCCcccccCCCccccEEec---cCCcccHhhHHHHHhC----CCCCcccccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIP---CGHTFCRVCSREMWLN----RGSCPLCNRSILEI 226 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lp---CGH~FC~~Cl~~~l~~----~~~CP~CR~~i~~i 226 (230)
+...|.||........++- |...|+..|+...... .-.||.|...+.+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 3456999987654433443 6667999998643332 22899998776554
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.33 E-value=9.1 Score=25.86 Aligned_cols=40 Identities=30% Similarity=0.653 Sum_probs=26.7
Q ss_pred CcccccCCCccccEEe---ccCCcccHhhHHHHHhCCCCCccc
Q 026976 180 SMCCVCMGRKKGAAFI---PCGHTFCRVCSREMWLNRGSCPLC 219 (230)
Q Consensus 180 ~~C~ICl~~~~~pv~l---pCGH~FC~~Cl~~~l~~~~~CP~C 219 (230)
..|-.|+..+.+.... .|++.||..|-.=....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4598998887654423 489999999953222222389988
No 84
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.56 E-value=14 Score=33.65 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=32.9
Q ss_pred CCCCcccccCCCccccEEe-ccCCcccHhhH--HHHHhCC--CCCcccccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI-PCGHTFCRVCS--REMWLNR--GSCPLCNRSIL 224 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl--~~~l~~~--~~CP~CR~~i~ 224 (230)
.-.+.|++-...+..|+.- .|.|.-|..-. ..+.... -.||+|.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4467899998888888765 59999665432 2222222 29999998763
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.79 E-value=21 Score=26.27 Aligned_cols=47 Identities=26% Similarity=0.665 Sum_probs=32.6
Q ss_pred CCcccccCCCcc----ccEEec---cCCcccHhhHHHHHhCCC-CCccccccccc
Q 026976 179 DSMCCVCMGRKK----GAAFIP---CGHTFCRVCSREMWLNRG-SCPLCNRSILE 225 (230)
Q Consensus 179 ~~~C~ICl~~~~----~pv~lp---CGH~FC~~Cl~~~l~~~~-~CP~CR~~i~~ 225 (230)
...|.||=+..- .-+|+. |+-..|+.|++--.+... .||.|...++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 457999987531 225665 555689999975555444 99999988763
No 86
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=46.24 E-value=5.8 Score=30.57 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.8
Q ss_pred ccchhhhhCcccc
Q 026976 40 GRNLKERLGLKSM 52 (230)
Q Consensus 40 ~~~l~~~l~~~~~ 52 (230)
...|||.|||||+
T Consensus 80 KQlLKe~LgFkGY 92 (120)
T 2l1n_A 80 KQLLKEELGFAGY 92 (120)
T ss_dssp TTHHHHTTCCCCC
T ss_pred HHHHHHhcCCCce
Confidence 6689999999998
No 87
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.61 E-value=11 Score=25.91 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=21.0
Q ss_pred CCCcccccCCCcccc---E-EeccCCcccHhhHH
Q 026976 178 NDSMCCVCMGRKKGA---A-FIPCGHTFCRVCSR 207 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p---v-~lpCGH~FC~~Cl~ 207 (230)
++..|.+|...|.-- . --.||.+||..|..
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 345799998866421 1 12599999999974
No 88
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=43.29 E-value=8.9 Score=30.79 Aligned_cols=47 Identities=23% Similarity=0.530 Sum_probs=33.5
Q ss_pred CCCcccccCCCccc---cEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKG---AAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~---pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
+-+.|..|...+.. ..+..=|..||..|..+.......|..|...|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 34678888887764 444556777999998776443336999998885
No 89
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.58 E-value=15 Score=27.30 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=34.4
Q ss_pred CCCcccccCCCcc---ccEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKK---GAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~---~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
+-+.|..|...+. ...+..=|..||..|..+.......|..|...|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 4678889988774 2344456777999998876554448999998885
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.40 E-value=8.5 Score=29.49 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=20.7
Q ss_pred CCcccccCCCcccc----EEeccCCcccHhhHHH
Q 026976 179 DSMCCVCMGRKKGA----AFIPCGHTFCRVCSRE 208 (230)
Q Consensus 179 ~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~ 208 (230)
...|.+|...|.-. .--.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34699998866421 1125999999999753
No 91
>2fqh_A Hypothetical protein TA0938; structural genomics, Zn-binding,, ontario centre for structural proteomics, OCSP, unknown function; NMR {Thermoplasma acidophilum}
Probab=40.69 E-value=9.9 Score=28.41 Aligned_cols=13 Identities=77% Similarity=1.413 Sum_probs=9.6
Q ss_pred Ccccccc--cCCCCC
Q 026976 48 GLKSMGC--CGATCG 60 (230)
Q Consensus 48 ~~~~~gc--~g~~~~ 60 (230)
|-|--|| ||+||+
T Consensus 14 G~k~tGCALCG~tWg 28 (109)
T 2fqh_A 14 GSKSKGCALCGATWG 28 (109)
T ss_dssp CSGGGSCSSCCCSCC
T ss_pred cccccceeeeCCchH
Confidence 5555677 899997
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=40.16 E-value=17 Score=24.07 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=28.7
Q ss_pred CCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhC--CC--CCcccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLN--RG--SCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~--~~--~CP~CR~~ 222 (230)
..+..|.+|...- +.+.- .|-..|+..|+..-+.. .+ .||.|...
T Consensus 9 ~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3567799998732 22221 36677999999764332 12 99999753
No 93
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=39.97 E-value=11 Score=28.23 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhC
Q 026976 200 TFCRVCSREMWLN 212 (230)
Q Consensus 200 ~FC~~Cl~~~l~~ 212 (230)
.||+.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 94
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.93 E-value=11 Score=28.27 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhC
Q 026976 200 TFCRVCSREMWLN 212 (230)
Q Consensus 200 ~FC~~Cl~~~l~~ 212 (230)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 95
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.80 E-value=2.6 Score=29.81 Aligned_cols=20 Identities=40% Similarity=1.085 Sum_probs=15.2
Q ss_pred ccCCcccHhhHHHHHhCCCCCc
Q 026976 196 PCGHTFCRVCSREMWLNRGSCP 217 (230)
Q Consensus 196 pCGH~FC~~Cl~~~l~~~~~CP 217 (230)
.|+|.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 4899999999987633 5554
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.64 E-value=18 Score=28.12 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=28.6
Q ss_pred CCCCcccccCCCccccEEeccCCcccHhhHHHHH------h---CCC--CCcccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMW------L---NRG--SCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l------~---~~~--~CP~CR~~ 222 (230)
..+..|.+|-+--.-.---.|-..||..|+.+.+ . ... .|+.|+..
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3455699998742211111477889999998642 1 122 99999744
No 97
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.18 E-value=11 Score=26.66 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=21.4
Q ss_pred CCCcccccCCCcccc---E-EeccCCcccHhhHHH
Q 026976 178 NDSMCCVCMGRKKGA---A-FIPCGHTFCRVCSRE 208 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p---v-~lpCGH~FC~~Cl~~ 208 (230)
+...|.+|...|.-- . --.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 355799998876422 1 125999999999754
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=38.98 E-value=22 Score=28.02 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=29.3
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHh---------CCC--CCccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWL---------NRG--SCPLCNR 221 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~---------~~~--~CP~CR~ 221 (230)
.+..|.+|.+--.-.---.|-..||..|+.+-+. ... .||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4667999987443111125777899999986542 222 8999984
No 99
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.75 E-value=7.5 Score=25.94 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=27.5
Q ss_pred CCCcccccCCCccccEE-eccCCcccHhhHHHHHhCC--C--CCccccccc
Q 026976 178 NDSMCCVCMGRKKGAAF-IPCGHTFCRVCSREMWLNR--G--SCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~-lpCGH~FC~~Cl~~~l~~~--~--~CP~CR~~i 223 (230)
....|.||.+.- +.+. -.|...|+..|+..-+... + .||.|....
T Consensus 8 ~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCC-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 466799998632 2111 1366778889986433321 1 899997653
No 100
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.10 E-value=13 Score=26.24 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=20.9
Q ss_pred CCcccccCCCcccc----EEeccCCcccHhhHHH
Q 026976 179 DSMCCVCMGRKKGA----AFIPCGHTFCRVCSRE 208 (230)
Q Consensus 179 ~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~ 208 (230)
...|.+|...|.-- .--.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45699998876421 1125999999999753
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.08 E-value=10 Score=31.47 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=21.6
Q ss_pred CCCcccccCCCcccc---E-EeccCCcccHhhHHH
Q 026976 178 NDSMCCVCMGRKKGA---A-FIPCGHTFCRVCSRE 208 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p---v-~lpCGH~FC~~Cl~~ 208 (230)
+...|.+|...|.-- . --.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 456899998766421 1 125999999999753
No 102
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=37.67 E-value=26 Score=25.81 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=32.9
Q ss_pred CCcccccCCCcccc-EEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 179 DSMCCVCMGRKKGA-AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 179 ~~~C~ICl~~~~~p-v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
-+.|..|...+... ....=|..||..|..+. ....|..|..+|.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 46788898877654 33446777999998764 4468999999987
No 103
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.95 E-value=12 Score=31.25 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=21.7
Q ss_pred CCCcccccCCCcccc----EEeccCCcccHhhHHH
Q 026976 178 NDSMCCVCMGRKKGA----AFIPCGHTFCRVCSRE 208 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~ 208 (230)
+...|.+|...|.-- .--.||++||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456899998766421 1235999999999753
No 104
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.48 E-value=12 Score=26.37 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=20.2
Q ss_pred CCcccccCCCcccc----EEeccCCcccHhhHH
Q 026976 179 DSMCCVCMGRKKGA----AFIPCGHTFCRVCSR 207 (230)
Q Consensus 179 ~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~ 207 (230)
...|.+|...|.-. ---.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45799998876421 112599999999975
No 105
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.27 E-value=15 Score=25.48 Aligned_cols=31 Identities=29% Similarity=0.734 Sum_probs=22.6
Q ss_pred CCcccccCCCccccEEecc-CCcccHhhHHHHH
Q 026976 179 DSMCCVCMGRKKGAAFIPC-GHTFCRVCSREMW 210 (230)
Q Consensus 179 ~~~C~ICl~~~~~pv~lpC-GH~FC~~Cl~~~l 210 (230)
..-|.||.+.-. ..-+.| +-.||..|..+..
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 445999998733 234567 6789999998875
No 106
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.01 E-value=12 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=20.5
Q ss_pred CCCcccccCCCcccc----EEeccCCcccHhhHHH
Q 026976 178 NDSMCCVCMGRKKGA----AFIPCGHTFCRVCSRE 208 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~ 208 (230)
+...|.+|...|.-. ---.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 355799998765421 1125899999999753
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.79 E-value=13 Score=27.19 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=26.4
Q ss_pred CCCcccccCCCccccEEec---cCCcccHhhHHHHHhC---CCCCccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIP---CGHTFCRVCSREMWLN---RGSCPLCNR 221 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lp---CGH~FC~~Cl~~~l~~---~~~CP~CR~ 221 (230)
+.+.| ||-....+..+|- |...|+..|+..-... .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 8876554445554 5566888887542222 129999974
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=33.09 E-value=15 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=21.2
Q ss_pred CCcccccCCCccc---c-EEeccCCcccHhhHHHH
Q 026976 179 DSMCCVCMGRKKG---A-AFIPCGHTFCRVCSREM 209 (230)
Q Consensus 179 ~~~C~ICl~~~~~---p-v~lpCGH~FC~~Cl~~~ 209 (230)
...|.+|...|.- . .-..||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4569999876542 1 12359999999997543
No 109
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.96 E-value=33 Score=26.78 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=32.6
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.-+.|..|...+....+..=|..||..|..+.. ...|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 457888898877655455556779999987653 358888888775
No 110
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.33 E-value=31 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCcccccCCCccccEEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.-+.|..|...+....+..=|..||..|..+. ....|..|...|.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccC
Confidence 45678888877765444445666999998654 3458888888775
No 111
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.16 E-value=18 Score=22.77 Aligned_cols=41 Identities=29% Similarity=0.737 Sum_probs=24.8
Q ss_pred cccccCCCccccEEe---ccCCcccHhhHHHHHhCC--C--CCccccc
Q 026976 181 MCCVCMGRKKGAAFI---PCGHTFCRVCSREMWLNR--G--SCPLCNR 221 (230)
Q Consensus 181 ~C~ICl~~~~~pv~l---pCGH~FC~~Cl~~~l~~~--~--~CP~CR~ 221 (230)
.|.||...-....++ .|...|+..|+..-+... + .||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887643222223 367779999996433321 1 7999864
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.47 E-value=6 Score=30.40 Aligned_cols=42 Identities=24% Similarity=0.616 Sum_probs=24.8
Q ss_pred CCcccccCCCcccc----EEeccCCcccHhhHHHHHhCCCCCcccc
Q 026976 179 DSMCCVCMGRKKGA----AFIPCGHTFCRVCSREMWLNRGSCPLCN 220 (230)
Q Consensus 179 ~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~~l~~~~~CP~CR 220 (230)
...|..|...|.-. .--.||.+||..|..........|-.|-
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 45699998766421 1236999999999765433334566653
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.89 E-value=5.1 Score=28.86 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=29.7
Q ss_pred CCCcccccCCCcc---ccEEe--ccCCcccHhhHHHHHh------CCC--CCccccccccc
Q 026976 178 NDSMCCVCMGRKK---GAAFI--PCGHTFCRVCSREMWL------NRG--SCPLCNRSILE 225 (230)
Q Consensus 178 ~~~~C~ICl~~~~---~pv~l--pCGH~FC~~Cl~~~l~------~~~--~CP~CR~~i~~ 225 (230)
....|.||...-. +..++ .|...|+..|+..-+. ..+ .|+.|......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4667999987532 33332 3777788888864332 122 88988765543
No 114
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.36 E-value=7.5 Score=25.35 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=26.0
Q ss_pred CCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCC--C--CCccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNR--G--SCPLCNR 221 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~--~--~CP~CR~ 221 (230)
..+..|.+|.+.- +.+.- .|...|+..|+..-+... + .||.|..
T Consensus 7 ~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3566799998742 22221 366678888886433321 1 6887753
No 115
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.41 E-value=23 Score=25.36 Aligned_cols=46 Identities=22% Similarity=0.629 Sum_probs=29.5
Q ss_pred CCCCcccccCCCc--cccEEe---ccCCcccHhhHHHHHhCCC--CCcccccc
Q 026976 177 GNDSMCCVCMGRK--KGAAFI---PCGHTFCRVCSREMWLNRG--SCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~--~~pv~l---pCGH~FC~~Cl~~~l~~~~--~CP~CR~~ 222 (230)
.++..|.||...- ..-.+| .|.-.|+..|+..-....+ .||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4567899998753 222333 3666799999864433333 89999754
No 116
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.08 E-value=13 Score=33.27 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=0.0
Q ss_pred CCcccccCCCcccc----EEeccCCcccHhhHHHHHh-------CCCCCccccccc
Q 026976 179 DSMCCVCMGRKKGA----AFIPCGHTFCRVCSREMWL-------NRGSCPLCNRSI 223 (230)
Q Consensus 179 ~~~C~ICl~~~~~p----v~lpCGH~FC~~Cl~~~l~-------~~~~CP~CR~~i 223 (230)
...|.+|...|.-. ....||++||..|...... ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45699998765421 2236999999999864431 112677774433
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.58 E-value=20 Score=27.83 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=27.5
Q ss_pred CCCcccccCCCcc---cc--EEeccCCcccHhhHHHHHhC--C-C-CCccccc
Q 026976 178 NDSMCCVCMGRKK---GA--AFIPCGHTFCRVCSREMWLN--R-G-SCPLCNR 221 (230)
Q Consensus 178 ~~~~C~ICl~~~~---~p--v~lpCGH~FC~~Cl~~~l~~--~-~-~CP~CR~ 221 (230)
....|.+|...+. +. +-..|.|.+|..|-...... . . .|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 5678999988762 21 33358999999996533111 1 1 6777764
No 118
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.54 E-value=14 Score=22.24 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.9
Q ss_pred CCcccccCCCcccc
Q 026976 179 DSMCCVCMGRKKGA 192 (230)
Q Consensus 179 ~~~C~ICl~~~~~p 192 (230)
.+.||+|+..+.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 57899999877665
No 119
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.08 E-value=8.3 Score=25.45 Aligned_cols=45 Identities=20% Similarity=0.553 Sum_probs=26.1
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCC--C--CCccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNR--G--SCPLCNRSI 223 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~--~--~CP~CR~~i 223 (230)
.+..|.+|...- +.+.- .|...|+..|+..-+... + .||.|....
T Consensus 4 ~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCS-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCC-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 456788887642 22221 366678888886433321 1 788886544
No 120
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=23.49 E-value=10 Score=25.53 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=26.6
Q ss_pred CCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCC--C--CCcccccc
Q 026976 178 NDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNR--G--SCPLCNRS 222 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~--~--~CP~CR~~ 222 (230)
.+..|.||.+.- +.+.- .|...|+..|+..-+... + .||.|...
T Consensus 7 ~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 566799998642 22222 366678888886433221 1 78888643
No 121
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.30 E-value=24 Score=24.81 Aligned_cols=45 Identities=16% Similarity=0.408 Sum_probs=32.2
Q ss_pred CCCcccccCCCcccc-EEeccCCcccHhhHHHHHhCCCCCcccccccc
Q 026976 178 NDSMCCVCMGRKKGA-AFIPCGHTFCRVCSREMWLNRGSCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~p-v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~i~ 224 (230)
.-+.|..|...+... ....=|..||..|..+. ....|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 457788998877654 33345677999997532 3459999999887
No 122
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.03 E-value=12 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=15.8
Q ss_pred EEeccCCcccHhhHHHHHhCCCCCcccccc
Q 026976 193 AFIPCGHTFCRVCSREMWLNRGSCPLCNRS 222 (230)
Q Consensus 193 v~lpCGH~FC~~Cl~~~l~~~~~CP~CR~~ 222 (230)
.-..||+.|+ .-+.....||.|+..
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 3446999982 112233599999865
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.88 E-value=23 Score=24.42 Aligned_cols=46 Identities=22% Similarity=0.629 Sum_probs=28.0
Q ss_pred CCCCcccccCCCc--cccEEe---ccCCcccHhhHHHHHhCCC--CCcccccc
Q 026976 177 GNDSMCCVCMGRK--KGAAFI---PCGHTFCRVCSREMWLNRG--SCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~--~~pv~l---pCGH~FC~~Cl~~~l~~~~--~CP~CR~~ 222 (230)
.....|.||.+.- .+-.++ .|.-.|+..|+..-....+ .||.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3567799998653 111223 4777788899864333222 88888643
No 124
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.44 E-value=30 Score=25.09 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=28.4
Q ss_pred CCCCcccccCCCccccEEe-ccCCcccHhhHHHHHhCCC----CCcccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI-PCGHTFCRVCSREMWLNRG----SCPLCNRS 222 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l-pCGH~FC~~Cl~~~l~~~~----~CP~CR~~ 222 (230)
.....|.+|.+.- +-+.- .|--.|+..|+..-+.... .||.|...
T Consensus 23 ~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4566799998753 22221 3666788999865544321 89999743
No 125
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.41 E-value=10 Score=25.43 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred CcccccCCCccc-----cEEec---cCCcccHhhHHHHHhCC
Q 026976 180 SMCCVCMGRKKG-----AAFIP---CGHTFCRVCSREMWLNR 213 (230)
Q Consensus 180 ~~C~ICl~~~~~-----pv~lp---CGH~FC~~Cl~~~l~~~ 213 (230)
..|+-|...... -+.-. |++.||..|...|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 457777654332 11222 88889999988775543
No 126
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.47 E-value=57 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=13.9
Q ss_pred CcccccCCCcccc-EEeccCCcccHhhHHHHH
Q 026976 180 SMCCVCMGRKKGA-AFIPCGHTFCRVCSREMW 210 (230)
Q Consensus 180 ~~C~ICl~~~~~p-v~lpCGH~FC~~Cl~~~l 210 (230)
+.|..|...+... .+..=+..||..|..+.+
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHARERV 73 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHHHHHH
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 4455555444321 222334445655554443
No 127
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.25 E-value=11 Score=27.34 Aligned_cols=45 Identities=20% Similarity=0.500 Sum_probs=25.2
Q ss_pred CCCCcccccCCCccccEEe---ccCCcccHhhHHHHHhCC--C--CCccccc
Q 026976 177 GNDSMCCVCMGRKKGAAFI---PCGHTFCRVCSREMWLNR--G--SCPLCNR 221 (230)
Q Consensus 177 ~~~~~C~ICl~~~~~pv~l---pCGH~FC~~Cl~~~l~~~--~--~CP~CR~ 221 (230)
.+...|.||...-....+| .|...|+..|+..-+... . .||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4566799997754322222 366667777775332221 1 6888864
No 128
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.13 E-value=46 Score=22.80 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=27.3
Q ss_pred CCCcccccCCCccccEEec-----cC-CcccHhhHHHHHhCCC--CCcccccccc
Q 026976 178 NDSMCCVCMGRKKGAAFIP-----CG-HTFCRVCSREMWLNRG--SCPLCNRSIL 224 (230)
Q Consensus 178 ~~~~C~ICl~~~~~pv~lp-----CG-H~FC~~Cl~~~l~~~~--~CP~CR~~i~ 224 (230)
+...| ||...... .++- |. ..|+..|+.-.....+ .||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 45567 89875443 3554 44 4699999862111112 8999976543
No 129
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=20.04 E-value=29 Score=34.43 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=16.8
Q ss_pred cHhhHHHHHhCC--------CCCccccccc
Q 026976 202 CRVCSREMWLNR--------GSCPLCNRSI 223 (230)
Q Consensus 202 C~~Cl~~~l~~~--------~~CP~CR~~i 223 (230)
|..|..+|.... ..||.|--.+
T Consensus 159 C~~C~~EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 159 CDFCRSEYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CHHHHHHHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred ChhHHHHhCCCCCCCCcCCCCCCccCCceE
Confidence 999999987642 2899997544
No 130
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.01 E-value=34 Score=27.16 Aligned_cols=43 Identities=21% Similarity=0.631 Sum_probs=27.6
Q ss_pred CCCcccccCCCcc---cc--EEeccCCcccHhhHHHHHhCCC--CCccccc
Q 026976 178 NDSMCCVCMGRKK---GA--AFIPCGHTFCRVCSREMWLNRG--SCPLCNR 221 (230)
Q Consensus 178 ~~~~C~ICl~~~~---~p--v~lpCGH~FC~~Cl~~~l~~~~--~CP~CR~ 221 (230)
....|.+|...|. +. +-..|.|.+|..|-. +..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4678999988642 22 333699999999973 222222 6777754
Done!