Query 026977
Match_columns 230
No_of_seqs 145 out of 1192
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 7.4E-55 1.6E-59 366.9 21.0 178 14-191 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 2.1E-44 4.6E-49 309.4 19.5 182 12-194 13-198 (205)
3 TIGR00725 conserved hypothetic 100.0 8.4E-42 1.8E-46 282.8 19.1 157 13-188 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 6.3E-39 1.4E-43 258.1 15.1 131 58-188 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.6 1.4E-14 3E-19 126.0 17.4 163 5-187 37-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 1.3E-11 2.7E-16 106.8 13.8 151 5-165 35-206 (212)
7 PRK10736 hypothetical protein; 99.2 3.7E-10 7.9E-15 105.2 16.5 167 4-190 99-285 (374)
8 COG0758 Smf Predicted Rossmann 99.0 1.4E-08 2.9E-13 94.0 14.4 159 14-191 112-289 (350)
9 PF12694 MoCo_carrier: Putativ 96.8 0.018 3.8E-07 47.3 10.4 93 48-147 1-98 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 95.3 0.04 8.7E-07 42.5 5.2 46 97-148 49-98 (113)
11 PF13528 Glyco_trans_1_3: Glyc 95.0 0.47 1E-05 42.0 11.9 124 44-190 192-316 (318)
12 TIGR01133 murG undecaprenyldip 94.4 2 4.4E-05 38.1 14.6 74 105-194 246-321 (348)
13 PF06908 DUF1273: Protein of u 94.2 0.93 2E-05 38.3 11.2 129 13-147 1-168 (177)
14 COG0707 MurG UDP-N-acetylgluco 93.9 1 2.2E-05 42.1 11.8 82 97-194 240-324 (357)
15 PRK13609 diacylglycerol glucos 93.5 2.6 5.7E-05 38.3 13.8 77 98-194 262-338 (380)
16 cd03785 GT1_MurG MurG is an N- 93.5 5.2 0.00011 35.5 15.8 77 101-193 244-323 (350)
17 KOG3614 Ca2+/Mg2+-permeable ca 92.9 1.8 3.9E-05 46.5 12.8 153 15-171 120-327 (1381)
18 TIGR01426 MGT glycosyltransfer 92.2 3.6 7.9E-05 37.7 12.8 71 106-194 288-359 (392)
19 PLN02605 monogalactosyldiacylg 92.1 3.8 8.3E-05 37.7 13.0 71 103-193 276-346 (382)
20 PF11071 DUF2872: Protein of u 91.7 3.4 7.4E-05 33.6 10.4 74 100-189 63-137 (141)
21 PF10686 DUF2493: Protein of u 91.5 2 4.3E-05 31.0 8.1 60 17-78 6-66 (71)
22 PRK13608 diacylglycerol glucos 91.2 4.4 9.6E-05 37.5 12.4 75 99-193 263-337 (391)
23 PRK00025 lpxB lipid-A-disaccha 91.0 2.1 4.6E-05 38.7 9.9 78 104-194 256-341 (380)
24 PF06258 Mito_fiss_Elm1: Mitoc 90.6 12 0.00026 34.2 14.4 77 106-191 225-308 (311)
25 PRK10565 putative carbohydrate 90.1 1.3 2.8E-05 43.2 8.0 127 44-189 254-384 (508)
26 TIGR00661 MJ1255 conserved hyp 89.5 12 0.00026 33.6 13.4 104 45-166 189-293 (321)
27 PRK12446 undecaprenyldiphospho 89.5 14 0.00031 33.9 14.1 73 105-192 248-323 (352)
28 cd03784 GT1_Gtf_like This fami 89.1 6.8 0.00015 35.8 11.7 72 105-193 300-371 (401)
29 COG3660 Predicted nucleoside-d 89.1 10 0.00022 34.7 12.2 58 106-172 241-299 (329)
30 TIGR03646 YtoQ_fam YtoQ family 88.8 7.5 0.00016 31.7 10.1 74 100-189 66-140 (144)
31 TIGR00215 lpxB lipid-A-disacch 88.5 13 0.00028 34.6 13.2 76 106-194 264-347 (385)
32 TIGR03590 PseG pseudaminic aci 88.0 6.5 0.00014 34.9 10.5 37 100-147 232-268 (279)
33 COG3613 Nucleoside 2-deoxyribo 85.9 5.6 0.00012 33.6 8.2 56 100-161 59-122 (172)
34 PRK13660 hypothetical protein; 85.8 21 0.00046 30.4 13.9 81 35-116 33-136 (182)
35 PF04101 Glyco_tran_28_C: Glyc 84.9 2.1 4.6E-05 34.5 5.2 77 104-194 67-144 (167)
36 cd03786 GT1_UDP-GlcNAc_2-Epime 80.8 41 0.00088 30.0 14.5 69 101-194 269-337 (363)
37 PRK05749 3-deoxy-D-manno-octul 79.5 52 0.0011 30.4 16.2 83 92-194 303-388 (425)
38 TIGR00196 yjeF_cterm yjeF C-te 78.0 15 0.00032 32.4 8.4 45 101-149 84-128 (272)
39 COG1819 Glycosyl transferases, 77.7 49 0.0011 31.2 12.3 130 41-194 234-368 (406)
40 COG1597 LCB5 Sphingosine kinas 74.4 6.2 0.00014 35.8 5.2 47 32-79 45-92 (301)
41 PRK00726 murG undecaprenyldiph 73.4 68 0.0015 28.7 16.1 81 97-194 240-324 (357)
42 COG2185 Sbm Methylmalonyl-CoA 72.4 10 0.00022 31.1 5.5 44 32-76 27-70 (143)
43 PF13607 Succ_CoA_lig: Succiny 69.8 22 0.00048 28.7 6.9 66 109-189 54-136 (138)
44 COG1010 CobJ Precorrin-3B meth 68.3 65 0.0014 28.8 9.9 107 39-148 66-196 (249)
45 COG0063 Predicted sugar kinase 68.0 96 0.0021 28.2 12.8 132 43-189 31-168 (284)
46 PRK00696 sucC succinyl-CoA syn 67.9 1E+02 0.0023 28.6 13.8 71 110-191 311-384 (388)
47 COG1832 Predicted CoA-binding 67.0 10 0.00022 31.1 4.3 33 12-49 15-47 (140)
48 COG0549 ArcC Carbamate kinase 65.9 15 0.00033 33.7 5.6 27 92-118 208-234 (312)
49 PRK00861 putative lipid kinase 65.6 13 0.00029 33.1 5.3 44 34-79 46-90 (300)
50 PRK13337 putative lipid kinase 64.3 17 0.00037 32.6 5.8 45 34-79 46-92 (304)
51 PF00781 DAGK_cat: Diacylglyce 64.0 12 0.00025 29.1 4.1 43 36-79 44-91 (130)
52 PRK13055 putative lipid kinase 62.6 17 0.00038 33.1 5.6 45 34-79 48-94 (334)
53 PRK09267 flavodoxin FldA; Vali 61.1 86 0.0019 25.3 9.3 26 13-41 1-26 (169)
54 PRK13054 lipid kinase; Reviewe 60.7 21 0.00045 31.9 5.6 45 34-79 45-93 (300)
55 PF04412 DUF521: Protein of un 60.7 1.6E+02 0.0034 28.2 14.2 154 7-165 175-348 (400)
56 TIGR03702 lip_kinase_YegS lipi 60.6 21 0.00045 31.9 5.6 45 34-79 41-89 (293)
57 PRK14557 pyrH uridylate kinase 60.0 1.1E+02 0.0023 27.1 9.9 40 15-54 6-54 (247)
58 PRK02645 ppnK inorganic polyph 59.8 16 0.00035 33.2 4.8 94 12-153 2-98 (305)
59 PRK11914 diacylglycerol kinase 59.5 1.3E+02 0.0028 26.8 10.6 29 113-146 67-95 (306)
60 COG0593 DnaA ATPase involved i 59.5 29 0.00062 33.2 6.5 104 32-145 96-214 (408)
61 PRK08862 short chain dehydroge 59.1 53 0.0011 27.9 7.7 54 14-75 6-59 (227)
62 cd03820 GT1_amsD_like This fam 58.5 52 0.0011 27.6 7.5 74 101-194 244-319 (348)
63 COG1057 NadD Nicotinic acid mo 58.5 14 0.0003 31.8 3.9 34 12-45 1-34 (197)
64 TIGR03492 conserved hypothetic 56.8 1.7E+02 0.0037 27.3 13.3 73 104-193 291-363 (396)
65 cd03808 GT1_cap1E_like This fa 56.7 36 0.00078 28.8 6.2 71 105-194 259-329 (359)
66 cd01171 YXKO-related B.subtili 56.6 49 0.0011 28.5 7.1 42 105-150 73-114 (254)
67 COG0300 DltE Short-chain dehyd 56.0 1.1E+02 0.0025 27.5 9.4 45 34-78 19-63 (265)
68 smart00046 DAGKc Diacylglycero 55.9 15 0.00032 28.6 3.4 32 113-146 52-85 (124)
69 PRK09922 UDP-D-galactose:(gluc 54.8 68 0.0015 28.8 8.0 76 99-195 247-325 (359)
70 cd03795 GT1_like_4 This family 54.7 75 0.0016 27.5 8.1 74 101-194 255-332 (357)
71 cd03804 GT1_wbaZ_like This fam 53.9 64 0.0014 28.5 7.6 73 101-194 253-326 (351)
72 PRK11914 diacylglycerol kinase 53.7 28 0.00061 31.1 5.3 45 33-79 52-97 (306)
73 TIGR03575 selen_PSTK_euk L-ser 53.4 36 0.00077 31.7 6.0 49 139-190 125-174 (340)
74 KOG2968 Predicted esterase of 53.4 10 0.00022 39.8 2.6 46 36-83 830-886 (1158)
75 CHL00200 trpA tryptophan synth 53.3 85 0.0018 28.1 8.2 40 122-165 75-119 (263)
76 PRK08105 flavodoxin; Provision 52.9 27 0.0006 28.2 4.6 34 13-49 1-34 (149)
77 cd03801 GT1_YqgM_like This fam 51.9 1.4E+02 0.0031 24.9 13.0 69 103-193 269-340 (374)
78 PRK09004 FMN-binding protein M 51.6 25 0.00055 28.3 4.2 34 13-49 1-34 (146)
79 cd03794 GT1_wbuB_like This fam 50.9 1.6E+02 0.0034 25.1 13.7 72 102-192 287-363 (394)
80 PRK06732 phosphopantothenate-- 50.2 1.7E+02 0.0037 25.3 10.4 30 46-76 17-47 (229)
81 cd03825 GT1_wcfI_like This fam 49.9 77 0.0017 27.5 7.4 72 102-194 257-330 (365)
82 PRK14569 D-alanyl-alanine synt 49.8 40 0.00086 30.1 5.6 38 13-50 3-40 (296)
83 PF00781 DAGK_cat: Diacylglyce 49.5 29 0.00062 26.9 4.1 39 106-146 48-89 (130)
84 cd03799 GT1_amsK_like This is 49.2 71 0.0015 27.6 7.0 75 101-194 247-327 (355)
85 PLN02958 diacylglycerol kinase 48.8 35 0.00075 33.2 5.4 45 34-79 157-208 (481)
86 cd00587 HCP_like The HCP famil 48.5 37 0.0008 30.5 5.1 42 10-53 91-132 (258)
87 cd03822 GT1_ecORF704_like This 48.0 83 0.0018 27.0 7.2 71 101-194 259-334 (366)
88 PF00534 Glycos_transf_1: Glyc 47.8 74 0.0016 24.9 6.4 74 100-194 83-158 (172)
89 TIGR03449 mycothiol_MshA UDP-N 47.6 80 0.0017 28.6 7.3 72 101-193 294-367 (405)
90 TIGR00519 asnASE_I L-asparagin 47.6 46 0.001 30.7 5.8 51 107-160 75-130 (336)
91 cd06259 YdcF-like YdcF-like. Y 47.3 92 0.002 24.4 6.8 11 111-121 1-11 (150)
92 PF01820 Dala_Dala_lig_N: D-al 47.3 23 0.0005 27.5 3.2 36 14-49 1-36 (117)
93 PF00861 Ribosomal_L18p: Ribos 47.2 67 0.0015 25.2 5.9 41 31-71 70-118 (119)
94 PRK06973 nicotinic acid mononu 47.2 31 0.00067 30.5 4.4 35 8-42 16-50 (243)
95 cd07025 Peptidase_S66 LD-Carbo 47.1 1.4E+02 0.003 26.7 8.6 60 98-164 46-110 (282)
96 KOG4022 Dihydropteridine reduc 47.0 1.1E+02 0.0024 26.3 7.4 70 44-120 3-83 (236)
97 COG1063 Tdh Threonine dehydrog 46.8 1.1E+02 0.0023 28.1 8.1 83 45-130 170-259 (350)
98 PTZ00032 60S ribosomal protein 46.6 49 0.0011 28.9 5.3 40 31-70 162-209 (211)
99 PF04007 DUF354: Protein of un 46.1 96 0.0021 28.8 7.6 64 106-192 245-308 (335)
100 PRK09355 hydroxyethylthiazole 45.6 87 0.0019 27.6 7.0 41 106-150 51-94 (263)
101 cd03818 GT1_ExpC_like This fam 45.3 76 0.0017 28.9 6.8 72 102-194 293-366 (396)
102 KOG3349 Predicted glycosyltran 44.5 77 0.0017 26.7 6.0 122 13-167 3-129 (170)
103 PRK12361 hypothetical protein; 44.5 44 0.00095 32.7 5.4 44 34-79 286-330 (547)
104 cd00411 Asparaginase Asparagin 44.5 57 0.0012 29.9 5.8 49 109-160 78-131 (323)
105 TIGR00060 L18_bact ribosomal p 44.1 47 0.001 26.2 4.5 40 31-70 65-112 (114)
106 PRK13057 putative lipid kinase 43.4 50 0.0011 29.2 5.2 45 33-79 39-83 (287)
107 PRK12359 flavodoxin FldB; Prov 43.2 62 0.0013 27.0 5.4 21 59-79 102-122 (172)
108 PRK15484 lipopolysaccharide 1, 42.6 1.2E+02 0.0025 27.8 7.7 72 102-194 269-344 (380)
109 cd07062 Peptidase_S66_mccF_lik 42.5 2.6E+02 0.0056 25.3 10.7 52 110-168 67-119 (308)
110 TIGR00640 acid_CoA_mut_C methy 42.4 1.1E+02 0.0023 24.4 6.5 46 29-75 14-59 (132)
111 PF00106 adh_short: short chai 42.3 34 0.00075 26.7 3.6 30 46-76 2-31 (167)
112 PHA00099 minor capsid protein 42.3 8 0.00017 31.3 -0.1 51 176-227 87-137 (147)
113 cd03807 GT1_WbnK_like This fam 42.2 69 0.0015 27.2 5.8 66 105-194 264-332 (365)
114 PRK05723 flavodoxin; Provision 42.1 43 0.00093 27.2 4.2 33 14-49 1-33 (151)
115 PF05159 Capsule_synth: Capsul 42.1 27 0.00058 30.6 3.2 37 105-153 195-231 (269)
116 PRK07775 short chain dehydroge 42.0 1.6E+02 0.0035 25.3 8.1 60 8-75 5-64 (274)
117 PRK05653 fabG 3-ketoacyl-(acyl 41.5 2E+02 0.0043 23.6 9.5 31 14-52 6-36 (246)
118 PRK02155 ppnK NAD(+)/NADH kina 41.4 1.5E+02 0.0033 26.7 8.1 60 12-75 4-93 (291)
119 cd03812 GT1_CapH_like This fam 41.4 1.1E+02 0.0024 26.6 7.0 70 104-195 261-332 (358)
120 PF12146 Hydrolase_4: Putative 41.2 46 0.001 23.9 3.8 40 7-50 9-48 (79)
121 TIGR03451 mycoS_dep_FDH mycoth 41.1 2.7E+02 0.0058 25.0 10.0 84 44-130 177-266 (358)
122 PF00106 adh_short: short chai 41.0 1.7E+02 0.0036 22.6 9.9 100 14-132 1-110 (167)
123 PRK14077 pnk inorganic polypho 41.0 1.5E+02 0.0033 26.8 8.0 67 3-75 1-94 (287)
124 PRK04539 ppnK inorganic polyph 41.0 1.7E+02 0.0036 26.7 8.2 61 12-76 4-99 (296)
125 PHA03392 egt ecdysteroid UDP-g 40.9 3.5E+02 0.0076 26.3 12.5 161 9-192 260-430 (507)
126 PTZ00075 Adenosylhomocysteinas 40.4 1E+02 0.0022 30.2 7.0 86 48-151 258-344 (476)
127 cd03800 GT1_Sucrose_synthase T 40.3 77 0.0017 28.0 6.0 70 103-193 296-367 (398)
128 PRK03378 ppnK inorganic polyph 39.7 1.8E+02 0.0039 26.4 8.2 60 12-75 4-93 (292)
129 PRK09880 L-idonate 5-dehydroge 39.7 2.2E+02 0.0047 25.4 8.8 82 45-130 171-256 (343)
130 COG3573 Predicted oxidoreducta 39.2 70 0.0015 30.6 5.5 75 46-128 141-235 (552)
131 cd03819 GT1_WavL_like This fam 39.1 1.5E+02 0.0033 25.7 7.5 68 103-191 257-327 (355)
132 cd03814 GT1_like_2 This family 39.0 84 0.0018 26.9 5.8 69 104-193 261-331 (364)
133 PLN02275 transferase, transfer 39.0 2.1E+02 0.0046 26.0 8.7 70 101-191 298-370 (371)
134 TIGR00936 ahcY adenosylhomocys 39.0 93 0.002 29.7 6.5 73 46-128 197-270 (406)
135 PRK06029 3-octaprenyl-4-hydrox 38.8 60 0.0013 27.5 4.7 81 109-190 78-168 (185)
136 TIGR00147 lipid kinase, YegS/R 38.8 79 0.0017 27.9 5.7 32 47-79 60-92 (293)
137 KOG3974 Predicted sugar kinase 38.7 1.9E+02 0.0041 26.5 8.0 49 101-152 93-144 (306)
138 PRK12422 chromosomal replicati 38.7 98 0.0021 29.7 6.7 104 33-145 121-241 (445)
139 COG3967 DltE Short-chain dehyd 38.4 37 0.0008 30.1 3.4 26 47-73 8-33 (245)
140 TIGR03702 lip_kinase_YegS lipi 38.2 1.9E+02 0.0041 25.6 8.1 34 110-146 53-87 (293)
141 KOG1201 Hydroxysteroid 17-beta 38.1 37 0.00081 31.2 3.5 30 43-73 37-66 (300)
142 CHL00139 rpl18 ribosomal prote 38.1 62 0.0013 25.2 4.3 40 31-70 60-107 (109)
143 PRK08887 nicotinic acid mononu 38.1 40 0.00086 28.0 3.5 24 13-36 1-24 (174)
144 KOG0022 Alcohol dehydrogenase, 37.8 57 0.0012 30.7 4.6 114 6-130 160-283 (375)
145 PF13692 Glyco_trans_1_4: Glyc 37.8 61 0.0013 24.3 4.3 70 102-192 63-133 (135)
146 TIGR00421 ubiX_pad polyprenyl 37.8 72 0.0016 26.8 5.0 80 109-190 75-165 (181)
147 PRK15494 era GTPase Era; Provi 37.8 3.2E+02 0.007 25.0 9.7 91 107-201 129-224 (339)
148 COG0240 GpsA Glycerol-3-phosph 37.6 3.4E+02 0.0075 25.3 11.1 42 13-64 1-43 (329)
149 cd06353 PBP1_BmpA_Med_like Per 37.5 1.9E+02 0.0042 25.1 7.9 55 14-76 153-207 (258)
150 PF09152 DUF1937: Domain of un 37.4 33 0.00073 27.2 2.7 38 102-145 72-114 (116)
151 cd04951 GT1_WbdM_like This fam 37.2 2.7E+02 0.0059 24.0 12.7 67 105-192 258-324 (360)
152 PF11834 DUF3354: Domain of un 37.1 74 0.0016 22.8 4.3 34 110-149 18-51 (69)
153 PLN02591 tryptophan synthase 37.1 1.9E+02 0.0041 25.7 7.8 40 122-165 62-106 (250)
154 TIGR01127 ilvA_1Cterm threonin 37.0 1.7E+02 0.0036 27.1 7.8 22 111-132 307-328 (380)
155 cd03809 GT1_mtfB_like This fam 37.0 2.7E+02 0.0058 23.8 9.0 67 104-193 267-335 (365)
156 PLN02896 cinnamyl-alcohol dehy 36.9 70 0.0015 28.8 5.2 39 1-50 1-39 (353)
157 PRK13057 putative lipid kinase 36.8 79 0.0017 28.0 5.4 33 108-146 49-81 (287)
158 PRK06756 flavodoxin; Provision 36.6 79 0.0017 24.9 4.9 75 107-181 47-130 (148)
159 PRK07524 hypothetical protein; 36.5 3.3E+02 0.0072 26.3 10.1 135 32-194 189-330 (535)
160 PRK01231 ppnK inorganic polyph 36.4 1.9E+02 0.0041 26.2 7.9 61 12-76 3-93 (295)
161 TIGR00236 wecB UDP-N-acetylglu 36.4 1.6E+02 0.0035 26.4 7.5 67 102-193 267-333 (365)
162 cd03823 GT1_ExpE7_like This fa 36.2 1.3E+02 0.0027 25.7 6.5 72 101-193 254-328 (359)
163 smart00046 DAGKc Diacylglycero 36.2 83 0.0018 24.3 4.8 32 47-79 52-87 (124)
164 PRK03708 ppnK inorganic polyph 36.1 76 0.0016 28.5 5.2 34 14-50 1-34 (277)
165 PRK04885 ppnK inorganic polyph 36.1 2E+02 0.0043 25.7 7.8 57 14-75 1-67 (265)
166 PRK14572 D-alanyl-alanine synt 36.0 67 0.0014 29.4 4.9 39 13-51 1-39 (347)
167 PRK05476 S-adenosyl-L-homocyst 35.9 1.1E+02 0.0024 29.4 6.5 85 46-148 214-299 (425)
168 PLN02871 UDP-sulfoquinovose:DA 35.7 1.2E+02 0.0026 28.6 6.7 75 101-193 323-399 (465)
169 PF14359 DUF4406: Domain of un 35.7 80 0.0017 23.7 4.5 37 101-143 51-90 (92)
170 PRK13059 putative lipid kinase 35.6 98 0.0021 27.6 5.8 35 108-146 55-89 (295)
171 COG2081 Predicted flavoprotein 35.6 37 0.00081 32.5 3.2 27 47-75 6-32 (408)
172 cd04949 GT1_gtfA_like This fam 35.3 3.2E+02 0.0069 24.2 12.2 69 106-194 275-345 (372)
173 PRK02645 ppnK inorganic polyph 35.3 2E+02 0.0043 26.1 7.8 28 47-75 60-87 (305)
174 PRK06182 short chain dehydroge 35.1 2.8E+02 0.0062 23.6 9.0 29 46-75 5-33 (273)
175 cd02072 Glm_B12_BD B12 binding 34.9 2.4E+02 0.0051 22.6 9.8 41 35-76 17-57 (128)
176 COG0716 FldA Flavodoxins [Ener 34.8 64 0.0014 25.8 4.1 33 13-48 1-33 (151)
177 KOG2467 Glycine/serine hydroxy 34.8 60 0.0013 31.1 4.4 37 32-68 328-374 (477)
178 COG4671 Predicted glycosyl tra 34.7 4.2E+02 0.0091 25.4 13.9 81 98-193 283-364 (400)
179 PRK08979 acetolactate synthase 34.6 4.5E+02 0.0098 25.7 11.6 130 33-190 195-333 (572)
180 PRK00861 putative lipid kinase 34.4 94 0.002 27.6 5.5 31 110-146 58-88 (300)
181 PF05690 ThiG: Thiazole biosyn 34.2 35 0.00077 30.5 2.6 92 36-147 114-205 (247)
182 PF02729 OTCace_N: Aspartate/o 34.1 1.1E+02 0.0023 24.7 5.3 76 63-158 59-134 (142)
183 CHL00175 minD septum-site dete 34.0 92 0.002 27.2 5.3 44 3-49 5-48 (281)
184 cd01408 SIRT1 SIRT1: Eukaryoti 33.9 1.1E+02 0.0023 26.7 5.7 70 100-188 166-235 (235)
185 cd05844 GT1_like_7 Glycosyltra 33.9 3.2E+02 0.0069 23.8 12.9 71 104-194 259-336 (367)
186 TIGR01753 flav_short flavodoxi 33.9 1E+02 0.0022 23.4 5.1 8 67-74 108-115 (140)
187 PRK02649 ppnK inorganic polyph 33.6 94 0.002 28.4 5.4 119 13-166 1-126 (305)
188 cd04728 ThiG Thiazole synthase 33.6 3.6E+02 0.0077 24.2 11.9 93 34-147 112-205 (248)
189 PRK13054 lipid kinase; Reviewe 33.5 2.5E+02 0.0053 25.0 8.1 36 109-146 56-91 (300)
190 PRK06703 flavodoxin; Provision 33.4 2.4E+02 0.0052 22.2 13.3 33 13-48 1-33 (151)
191 cd07227 Pat_Fungal_NTE1 Fungal 33.2 33 0.00071 30.8 2.3 30 36-67 1-30 (269)
192 PF02608 Bmp: Basic membrane p 33.2 74 0.0016 28.5 4.7 56 15-76 163-220 (306)
193 TIGR01501 MthylAspMutase methy 33.0 2.6E+02 0.0056 22.5 12.2 42 34-76 18-59 (134)
194 PRK13111 trpA tryptophan synth 32.9 3E+02 0.0065 24.4 8.4 41 122-165 72-117 (258)
195 PRK02649 ppnK inorganic polyph 32.8 2.3E+02 0.005 25.9 7.8 29 45-75 70-98 (305)
196 cd07225 Pat_PNPLA6_PNPLA7 Pata 32.8 45 0.00097 30.4 3.2 31 35-67 5-35 (306)
197 PF13380 CoA_binding_2: CoA bi 32.5 86 0.0019 24.2 4.3 31 14-49 1-31 (116)
198 PF01182 Glucosamine_iso: Gluc 32.4 2.1E+02 0.0046 24.0 7.1 85 106-191 17-110 (199)
199 PRK14571 D-alanyl-alanine synt 32.3 92 0.002 27.6 5.1 35 15-49 2-36 (299)
200 PRK06703 flavodoxin; Provision 32.2 1.1E+02 0.0025 24.1 5.1 14 61-74 105-118 (151)
201 PRK10537 voltage-gated potassi 32.0 3.8E+02 0.0083 25.3 9.4 94 44-145 240-335 (393)
202 KOG4175 Tryptophan synthase al 31.9 95 0.0021 27.4 4.8 33 122-157 78-110 (268)
203 cd04180 UGPase_euk_like Eukary 31.9 1.3E+02 0.0028 26.7 5.9 69 112-192 2-76 (266)
204 PRK09461 ansA cytoplasmic aspa 31.7 1.2E+02 0.0026 28.0 5.9 51 108-160 80-135 (335)
205 PRK01966 ddl D-alanyl-alanine 31.6 81 0.0017 28.6 4.7 36 14-49 4-39 (333)
206 PRK04183 glutamyl-tRNA(Gln) am 31.6 1.2E+02 0.0027 29.0 6.0 48 110-160 153-205 (419)
207 PRK01372 ddl D-alanine--D-alan 31.6 79 0.0017 27.8 4.5 37 14-50 5-41 (304)
208 cd03811 GT1_WabH_like This fam 31.5 1.5E+02 0.0033 24.8 6.1 65 106-191 260-329 (353)
209 PRK14568 vanB D-alanine--D-lac 31.4 75 0.0016 29.0 4.5 36 14-49 4-39 (343)
210 cd03821 GT1_Bme6_like This fam 31.3 1.9E+02 0.004 24.6 6.7 69 103-194 275-345 (375)
211 COG0800 Eda 2-keto-3-deoxy-6-p 31.3 1.6E+02 0.0034 25.8 6.1 118 4-132 4-125 (211)
212 PRK14138 NAD-dependent deacety 31.2 1.3E+02 0.0028 26.4 5.8 70 100-191 169-240 (244)
213 PF00308 Bac_DnaA: Bacterial d 31.1 95 0.0021 26.6 4.8 106 32-146 17-137 (219)
214 PRK09124 pyruvate dehydrogenas 31.1 5.1E+02 0.011 25.3 11.5 130 33-191 190-322 (574)
215 TIGR01205 D_ala_D_alaTIGR D-al 31.0 66 0.0014 28.4 3.9 40 15-54 1-40 (315)
216 COG0159 TrpA Tryptophan syntha 30.8 2.9E+02 0.0062 25.0 7.9 63 122-190 77-141 (265)
217 PRK07418 acetolactate synthase 30.8 5.4E+02 0.012 25.5 12.3 137 33-192 213-353 (616)
218 cd04962 GT1_like_5 This family 30.8 1.6E+02 0.0035 25.8 6.4 68 105-193 266-335 (371)
219 PRK08264 short chain dehydroge 30.7 3.1E+02 0.0066 22.6 9.3 30 45-75 7-37 (238)
220 PF12831 FAD_oxidored: FAD dep 30.6 51 0.0011 31.1 3.3 29 47-77 2-30 (428)
221 cd03802 GT1_AviGT4_like This f 30.5 2.7E+02 0.0058 23.8 7.7 65 104-191 238-305 (335)
222 PLN02586 probable cinnamyl alc 30.4 1.7E+02 0.0037 26.6 6.6 83 45-130 185-268 (360)
223 cd02201 FtsZ_type1 FtsZ is a G 30.4 3.1E+02 0.0067 24.7 8.2 73 37-117 78-154 (304)
224 PRK14075 pnk inorganic polypho 30.2 2E+02 0.0043 25.5 6.8 53 14-76 1-69 (256)
225 TIGR01016 sucCoAbeta succinyl- 30.2 4.5E+02 0.0097 24.4 12.9 70 110-190 311-383 (386)
226 PLN02271 serine hydroxymethylt 30.1 1E+02 0.0023 30.9 5.4 41 32-72 442-492 (586)
227 cd00432 Ribosomal_L18_L5e Ribo 30.1 1E+02 0.0022 23.2 4.4 39 31-69 56-102 (103)
228 PRK08277 D-mannonate oxidoredu 30.1 3.5E+02 0.0075 23.0 8.8 88 12-118 9-96 (278)
229 PRK13337 putative lipid kinase 30.1 2.4E+02 0.0052 25.1 7.5 33 110-146 58-90 (304)
230 PRK09271 flavodoxin; Provision 29.9 95 0.0021 25.1 4.4 32 14-48 1-32 (160)
231 PLN02740 Alcohol dehydrogenase 29.9 1.4E+02 0.003 27.3 6.0 83 45-130 200-289 (381)
232 TIGR01182 eda Entner-Doudoroff 29.8 2.3E+02 0.005 24.4 6.9 109 13-132 8-120 (204)
233 PRK03372 ppnK inorganic polyph 29.8 3E+02 0.0065 25.2 8.1 60 12-75 4-102 (306)
234 PF01985 CRS1_YhbY: CRS1 / Yhb 29.7 48 0.001 24.3 2.4 57 133-191 10-67 (84)
235 TIGR03088 stp2 sugar transfera 29.7 4E+02 0.0087 23.6 13.6 68 105-193 268-337 (374)
236 PLN02494 adenosylhomocysteinas 29.6 2E+02 0.0043 28.3 7.1 75 45-129 255-330 (477)
237 PRK05333 NAD-dependent deacety 29.6 96 0.0021 27.8 4.7 73 100-194 205-279 (285)
238 KOG4435 Predicted lipid kinase 29.6 1.8E+02 0.0039 28.3 6.6 96 55-155 36-157 (535)
239 PTZ00187 succinyl-CoA syntheta 29.6 2.6E+02 0.0057 25.9 7.6 84 97-192 210-313 (317)
240 PRK06138 short chain dehydroge 29.5 1E+02 0.0022 25.7 4.7 33 1-49 1-33 (252)
241 PRK05866 short chain dehydroge 29.5 2.4E+02 0.0052 24.8 7.2 33 14-54 41-73 (293)
242 COG1325 Predicted exosome subu 29.3 86 0.0019 26.0 3.9 63 136-213 48-111 (149)
243 PF03358 FMN_red: NADPH-depend 29.3 1.1E+02 0.0024 23.8 4.6 47 101-147 62-114 (152)
244 COG0493 GltD NADPH-dependent g 29.2 3.3E+02 0.0071 26.4 8.6 50 14-84 124-174 (457)
245 PF14947 HTH_45: Winged helix- 29.0 67 0.0015 22.9 3.0 40 151-191 33-72 (77)
246 PF00290 Trp_syntA: Tryptophan 28.9 1.4E+02 0.0031 26.7 5.6 87 122-217 70-166 (259)
247 smart00870 Asparaginase Aspara 28.6 93 0.002 28.5 4.5 50 109-160 77-131 (323)
248 TIGR02153 gatD_arch glutamyl-t 28.6 1.4E+02 0.0031 28.4 5.9 49 110-160 140-193 (404)
249 PRK08199 thiamine pyrophosphat 28.2 5.6E+02 0.012 24.9 10.4 130 34-191 194-335 (557)
250 cd05009 SIS_GlmS_GlmD_2 SIS (S 28.2 2.8E+02 0.006 21.3 7.5 93 34-147 3-97 (153)
251 PRK07825 short chain dehydroge 28.2 1.2E+02 0.0027 25.8 5.1 38 1-54 1-38 (273)
252 COG0163 UbiX 3-polyprenyl-4-hy 28.1 1.3E+02 0.0028 26.0 4.9 81 110-190 81-170 (191)
253 PLN02496 probable phosphopanto 28.1 2.9E+02 0.0064 24.0 7.3 89 106-194 93-199 (209)
254 PF09848 DUF2075: Uncharacteri 28.1 4.6E+02 0.01 23.9 13.4 87 105-193 113-215 (352)
255 PRK00654 glgA glycogen synthas 28.1 5.2E+02 0.011 24.4 14.8 73 104-192 351-426 (466)
256 PRK07109 short chain dehydroge 28.1 2.9E+02 0.0062 24.9 7.6 56 13-76 8-63 (334)
257 PRK14077 pnk inorganic polypho 27.9 1.5E+02 0.0032 26.9 5.6 51 109-165 64-121 (287)
258 PRK05867 short chain dehydroge 27.6 3.7E+02 0.0079 22.5 12.1 33 14-54 10-42 (253)
259 PRK07313 phosphopantothenoylcy 27.6 2.6E+02 0.0056 23.4 6.7 88 106-193 74-179 (182)
260 cd03798 GT1_wlbH_like This fam 27.4 3.7E+02 0.0081 22.5 12.6 71 103-194 272-344 (377)
261 cd03805 GT1_ALG2_like This fam 27.3 2.8E+02 0.0061 24.6 7.4 69 104-194 294-364 (392)
262 PRK09496 trkA potassium transp 27.3 1.5E+02 0.0032 27.7 5.8 89 29-120 216-308 (453)
263 TIGR01198 pgl 6-phosphoglucono 27.3 3.9E+02 0.0086 23.0 8.1 42 107-151 25-66 (233)
264 PRK07832 short chain dehydroge 26.9 2.9E+02 0.0063 23.6 7.2 87 14-118 1-87 (272)
265 PRK11253 ldcA L,D-carboxypepti 26.9 4.8E+02 0.01 23.7 10.0 38 98-136 49-92 (305)
266 PRK05583 ribosomal protein L7A 26.9 1.9E+02 0.0041 22.1 5.3 56 93-159 37-99 (104)
267 PRK07677 short chain dehydroge 26.7 97 0.0021 26.1 4.1 10 110-119 79-88 (252)
268 PF09314 DUF1972: Domain of un 26.7 1.2E+02 0.0025 25.8 4.5 40 13-52 1-42 (185)
269 COG2085 Predicted dinucleotide 26.6 1.2E+02 0.0026 26.5 4.6 52 13-75 1-52 (211)
270 PRK14086 dnaA chromosomal repl 26.6 2.2E+02 0.0048 28.8 7.0 90 47-145 317-416 (617)
271 PF13614 AAA_31: AAA domain; P 26.5 1.5E+02 0.0032 23.0 4.9 33 14-49 1-33 (157)
272 TIGR03201 dearomat_had 6-hydro 26.5 4.7E+02 0.01 23.3 9.0 30 45-76 168-197 (349)
273 KOG2585 Uncharacterized conser 26.4 1.1E+02 0.0023 29.8 4.5 31 13-48 266-296 (453)
274 PRK07102 short chain dehydroge 26.3 93 0.002 26.0 3.9 30 14-51 2-31 (243)
275 TIGR02822 adh_fam_2 zinc-bindi 26.3 80 0.0017 28.3 3.6 31 45-77 167-197 (329)
276 PRK15427 colanic acid biosynth 26.2 3E+02 0.0065 25.5 7.6 71 104-193 293-369 (406)
277 PRK07102 short chain dehydroge 26.2 3.8E+02 0.0082 22.2 11.6 30 46-76 3-32 (243)
278 PRK03708 ppnK inorganic polyph 26.1 3.4E+02 0.0073 24.3 7.6 26 48-75 61-86 (277)
279 PF04230 PS_pyruv_trans: Polys 25.8 92 0.002 25.7 3.7 41 108-148 62-108 (286)
280 TIGR01752 flav_long flavodoxin 25.7 1.6E+02 0.0035 23.8 5.1 20 58-77 100-119 (167)
281 PF05834 Lycopene_cycl: Lycope 25.6 1.7E+02 0.0037 26.9 5.8 95 48-159 3-98 (374)
282 TIGR02149 glgA_Coryne glycogen 25.5 1.4E+02 0.003 26.6 5.0 38 104-149 275-314 (388)
283 PRK12743 oxidoreductase; Provi 25.5 4.1E+02 0.0088 22.3 10.7 12 109-120 80-91 (256)
284 PRK06924 short chain dehydroge 25.5 1.2E+02 0.0025 25.4 4.3 29 13-49 1-29 (251)
285 PRK09330 cell division protein 25.5 3.2E+02 0.0069 26.0 7.6 55 55-117 113-167 (384)
286 TIGR02717 AcCoA-syn-alpha acet 25.4 6E+02 0.013 24.2 12.9 133 44-192 296-444 (447)
287 PRK13937 phosphoheptose isomer 25.3 1.7E+02 0.0036 24.3 5.2 31 28-58 22-52 (188)
288 COG0252 AnsB L-asparaginase/ar 25.3 1.9E+02 0.0041 27.1 6.0 34 111-147 102-135 (351)
289 PRK06180 short chain dehydroge 25.2 1E+02 0.0022 26.6 4.0 33 14-54 5-37 (277)
290 PRK14573 bifunctional D-alanyl 25.1 1.1E+02 0.0024 31.4 4.8 42 6-49 446-487 (809)
291 PF10111 Glyco_tranf_2_2: Glyc 25.1 4.7E+02 0.01 22.9 10.0 77 34-123 49-133 (281)
292 PRK05854 short chain dehydroge 25.1 98 0.0021 27.6 4.0 33 14-54 15-47 (313)
293 PF10727 Rossmann-like: Rossma 25.0 1.3E+02 0.0029 23.8 4.3 28 13-49 10-37 (127)
294 PRK10494 hypothetical protein; 25.0 2.7E+02 0.0059 24.7 6.7 12 109-120 78-89 (259)
295 PRK09072 short chain dehydroge 24.9 1.4E+02 0.003 25.3 4.8 29 15-51 7-35 (263)
296 COG2022 ThiG Uncharacterized e 24.9 84 0.0018 28.2 3.4 111 15-147 102-212 (262)
297 PRK01231 ppnK inorganic polyph 24.9 1.5E+02 0.0034 26.8 5.2 34 109-148 62-95 (295)
298 PRK07035 short chain dehydroge 24.9 1E+02 0.0023 25.8 4.0 31 14-52 9-39 (252)
299 PRK08226 short chain dehydroge 24.9 3.9E+02 0.0085 22.4 7.6 64 12-84 5-68 (263)
300 cd05212 NAD_bind_m-THF_DH_Cycl 24.8 3.7E+02 0.008 21.6 9.2 101 13-127 28-130 (140)
301 PF03492 Methyltransf_7: SAM d 24.8 75 0.0016 29.3 3.2 43 149-191 198-243 (334)
302 PLN02945 nicotinamide-nucleoti 24.8 1.8E+02 0.0038 25.4 5.4 39 11-49 19-57 (236)
303 PLN03050 pyridoxine (pyridoxam 24.7 1.4E+02 0.0031 26.3 4.8 30 14-48 61-90 (246)
304 COG0112 GlyA Glycine/serine hy 24.7 68 0.0015 30.8 2.9 40 32-71 291-340 (413)
305 PRK02261 methylaspartate mutas 24.7 3.6E+02 0.0078 21.4 8.2 41 35-76 21-61 (137)
306 PRK14087 dnaA chromosomal repl 24.6 2.8E+02 0.0062 26.6 7.2 107 32-145 124-245 (450)
307 cd06320 PBP1_allose_binding Pe 24.5 1.6E+02 0.0034 24.8 5.0 32 16-49 2-33 (275)
308 PF10087 DUF2325: Uncharacteri 24.4 2.9E+02 0.0063 20.3 10.1 91 48-160 3-95 (97)
309 TIGR01832 kduD 2-deoxy-D-gluco 24.4 1.1E+02 0.0024 25.5 4.0 11 110-120 81-91 (248)
310 PLN00141 Tic62-NAD(P)-related 24.3 1.3E+02 0.0029 25.5 4.6 31 13-51 17-47 (251)
311 PRK08105 flavodoxin; Provision 24.3 1.9E+02 0.004 23.3 5.1 26 49-74 89-120 (149)
312 PRK06935 2-deoxy-D-gluconate 3 24.3 4.3E+02 0.0093 22.2 11.1 31 14-52 16-46 (258)
313 TIGR03366 HpnZ_proposed putati 24.3 1.6E+02 0.0035 25.5 5.1 83 45-130 122-208 (280)
314 PRK07890 short chain dehydroge 24.2 4.2E+02 0.0091 22.0 10.3 83 14-121 6-94 (258)
315 PRK05593 rplR 50S ribosomal pr 24.2 1.2E+02 0.0027 23.8 3.9 40 31-70 68-115 (117)
316 PF04127 DFP: DNA / pantothena 24.2 3.2E+02 0.007 23.0 6.7 66 46-116 20-89 (185)
317 COG0796 MurI Glutamate racemas 24.2 5.4E+02 0.012 23.3 17.4 155 28-195 50-223 (269)
318 cd01412 SIRT5_Af1_CobB SIRT5_A 24.1 3E+02 0.0064 23.5 6.7 67 101-188 156-223 (224)
319 KOG0832 Mitochondrial/chloropl 24.1 2.2E+02 0.0049 25.4 5.8 45 28-73 91-136 (251)
320 cd00458 SugarP_isomerase Sugar 24.1 3.9E+02 0.0085 21.7 8.4 45 106-151 16-60 (169)
321 PF13407 Peripla_BP_4: Peripla 24.1 1.7E+02 0.0037 24.4 5.1 39 105-148 51-89 (257)
322 PRK08339 short chain dehydroge 23.9 1.1E+02 0.0024 26.2 4.0 10 110-119 86-95 (263)
323 PRK13059 putative lipid kinase 23.9 1.7E+02 0.0037 26.1 5.3 38 41-79 52-91 (295)
324 cd00401 AdoHcyase S-adenosyl-L 23.8 2.1E+02 0.0045 27.4 6.1 70 45-125 203-273 (413)
325 COG3919 Predicted ATP-grasp en 23.8 1.6E+02 0.0034 27.7 5.0 89 112-209 5-116 (415)
326 COG4098 comFA Superfamily II D 23.7 2E+02 0.0043 27.5 5.7 52 28-79 100-154 (441)
327 COG0703 AroK Shikimate kinase 23.6 3E+02 0.0066 23.2 6.4 73 104-193 66-139 (172)
328 PRK08217 fabG 3-ketoacyl-(acyl 23.6 1.2E+02 0.0025 25.2 4.0 14 36-49 20-33 (253)
329 cd03817 GT1_UGDG_like This fam 23.5 3.3E+02 0.0073 23.0 6.9 40 101-148 270-311 (374)
330 PRK14106 murD UDP-N-acetylmura 23.4 2.2E+02 0.0048 26.6 6.2 29 47-77 8-36 (450)
331 PRK07478 short chain dehydroge 23.3 4.4E+02 0.0096 22.0 10.3 106 12-136 5-118 (254)
332 PF03853 YjeF_N: YjeF-related 23.3 63 0.0014 26.5 2.2 35 11-50 23-57 (169)
333 cd08185 Fe-ADH1 Iron-containin 23.3 2.3E+02 0.0049 26.3 6.1 13 108-120 82-94 (380)
334 TIGR03282 methan_mark_13 putat 23.2 2.7E+02 0.0058 26.3 6.4 33 45-78 52-84 (352)
335 PRK15454 ethanol dehydrogenase 23.2 2.1E+02 0.0045 26.9 5.9 13 108-120 105-117 (395)
336 PF12965 DUF3854: Domain of un 23.2 3.6E+02 0.0078 21.4 6.5 49 14-63 69-124 (130)
337 PRK06443 chorismate mutase; Va 23.1 1.4E+02 0.0031 25.4 4.2 42 29-74 91-132 (177)
338 TIGR01007 eps_fam capsular exo 23.0 2.1E+02 0.0046 23.5 5.4 34 13-49 17-50 (204)
339 PRK09291 short chain dehydroge 23.0 1.2E+02 0.0027 25.3 4.0 32 14-53 3-34 (257)
340 PRK06079 enoyl-(acyl carrier p 22.8 1.4E+02 0.0031 25.3 4.5 35 3-49 1-37 (252)
341 PF09353 DUF1995: Domain of un 22.8 4.7E+02 0.01 22.1 10.4 34 110-147 98-131 (209)
342 PRK07062 short chain dehydroge 22.7 1.2E+02 0.0026 25.7 3.9 17 35-51 22-38 (265)
343 PRK08177 short chain dehydroge 22.6 1.4E+02 0.0031 24.6 4.3 31 14-52 2-32 (225)
344 cd04261 AAK_AKii-LysC-BS AAK_A 22.6 2.1E+02 0.0045 24.6 5.4 42 17-60 4-47 (239)
345 PRK08085 gluconate 5-dehydroge 22.6 4.6E+02 0.0099 21.9 7.7 33 14-54 10-42 (254)
346 PRK07454 short chain dehydroge 22.6 4.4E+02 0.0096 21.7 11.0 34 12-53 5-38 (241)
347 PRK06124 gluconate 5-dehydroge 22.6 4.3E+02 0.0094 22.0 7.4 56 12-75 10-65 (256)
348 PRK09536 btuD corrinoid ABC tr 22.6 1.9E+02 0.0042 27.4 5.6 70 58-127 279-356 (402)
349 TIGR01754 flav_RNR ribonucleot 22.5 1.5E+02 0.0032 23.2 4.2 38 109-148 50-90 (140)
350 COG0794 GutQ Predicted sugar p 22.5 2.5E+02 0.0054 24.4 5.7 48 48-118 92-139 (202)
351 PF00710 Asparaginase: Asparag 22.5 2.2E+02 0.0048 25.9 5.8 37 108-146 71-107 (313)
352 PF01256 Carb_kinase: Carbohyd 22.4 5.3E+02 0.011 22.5 10.0 125 48-191 2-134 (242)
353 PRK11780 isoprenoid biosynthes 22.3 87 0.0019 27.1 3.0 38 14-52 2-40 (217)
354 PRK07023 short chain dehydroge 22.3 1.4E+02 0.0031 24.8 4.3 30 13-50 1-30 (243)
355 PRK08303 short chain dehydroge 22.3 1.2E+02 0.0025 27.1 3.9 31 14-52 9-39 (305)
356 PRK06015 keto-hydroxyglutarate 22.1 4.2E+02 0.009 22.8 7.1 109 13-132 4-116 (201)
357 PRK12367 short chain dehydroge 22.0 1.3E+02 0.0027 26.0 4.0 30 46-76 16-45 (245)
358 PRK08589 short chain dehydroge 22.0 1.3E+02 0.0027 25.9 4.0 53 14-75 7-59 (272)
359 PRK00149 dnaA chromosomal repl 21.9 3.4E+02 0.0073 25.8 7.1 43 33-75 132-184 (450)
360 PRK08589 short chain dehydroge 21.8 4.9E+02 0.011 22.2 7.6 31 45-76 7-37 (272)
361 COG3980 spsG Spore coat polysa 21.7 1.6E+02 0.0034 27.3 4.5 41 14-54 1-41 (318)
362 COG1597 LCB5 Sphingosine kinas 21.7 1.2E+02 0.0025 27.6 3.8 30 112-146 60-90 (301)
363 cd01411 SIR2H SIR2H: Uncharact 21.5 1.1E+02 0.0023 26.5 3.4 45 100-148 162-206 (225)
364 cd06300 PBP1_ABC_sugar_binding 21.4 2.1E+02 0.0045 24.1 5.1 36 106-146 57-92 (272)
365 TIGR00436 era GTP-binding prot 21.3 5.5E+02 0.012 22.3 8.7 86 107-200 77-171 (270)
366 cd06313 PBP1_ABC_sugar_binding 21.3 1.9E+02 0.0042 24.6 5.0 38 105-147 51-88 (272)
367 PRK07283 hypothetical protein; 21.2 1.8E+02 0.004 21.8 4.2 38 110-156 59-96 (98)
368 PF01113 DapB_N: Dihydrodipico 21.2 3.9E+02 0.0084 20.5 7.6 50 107-163 65-114 (124)
369 PRK00071 nadD nicotinic acid m 21.1 1.4E+02 0.0031 25.0 4.0 25 13-37 3-27 (203)
370 PRK07523 gluconate 5-dehydroge 21.1 4.9E+02 0.011 21.7 10.7 103 12-133 9-118 (255)
371 PRK06139 short chain dehydroge 21.0 3.8E+02 0.0083 24.2 7.1 54 14-75 8-61 (330)
372 smart00516 SEC14 Domain in hom 21.0 2.6E+02 0.0055 21.5 5.3 64 122-190 79-146 (158)
373 PRK14046 malate--CoA ligase su 21.0 7.1E+02 0.015 23.5 14.3 115 50-191 262-384 (392)
374 cd08233 butanediol_DH_like (2R 20.9 5.9E+02 0.013 22.5 8.8 30 45-76 174-204 (351)
375 PRK12481 2-deoxy-D-gluconate 3 20.9 1.4E+02 0.003 25.3 4.0 31 14-52 9-39 (251)
376 PF01075 Glyco_transf_9: Glyco 20.9 4.3E+02 0.0094 22.1 7.0 105 12-146 104-209 (247)
377 PRK11840 bifunctional sulfur c 20.9 6.9E+02 0.015 23.3 11.9 109 15-147 169-279 (326)
378 PRK09072 short chain dehydroge 20.8 1.4E+02 0.0031 25.3 4.0 32 44-76 5-36 (263)
379 PRK05876 short chain dehydroge 20.8 4.8E+02 0.01 22.5 7.4 56 12-75 5-60 (275)
380 cd07371 2A5CPDO_AB The alpha a 20.8 2.3E+02 0.005 25.1 5.5 48 7-54 125-174 (268)
381 TIGR00715 precor6x_red precorr 20.8 5.6E+02 0.012 22.7 7.9 57 108-191 196-254 (256)
382 PRK10200 putative racemase; Pr 20.7 5.4E+02 0.012 22.2 7.7 107 114-221 4-126 (230)
383 PRK12938 acetyacetyl-CoA reduc 20.7 4.9E+02 0.011 21.5 7.7 56 12-75 2-58 (246)
384 TIGR02690 resist_ArsH arsenica 20.7 2.1E+02 0.0046 24.9 5.1 49 101-149 82-138 (219)
385 cd08184 Fe-ADH3 Iron-containin 20.6 5.3E+02 0.011 23.8 8.0 12 109-120 81-92 (347)
386 PRK07814 short chain dehydroge 20.6 1.5E+02 0.0032 25.3 4.1 32 14-53 11-42 (263)
387 PRK09242 tropinone reductase; 20.6 5.1E+02 0.011 21.6 9.0 32 14-53 10-41 (257)
388 PRK07533 enoyl-(acyl carrier p 20.6 2.1E+02 0.0045 24.4 5.0 36 7-49 2-40 (258)
389 cd01400 6PGL 6PGL: 6-Phosphogl 20.6 4.5E+02 0.0099 22.3 7.1 44 106-151 19-62 (219)
390 PRK07116 flavodoxin; Provision 20.6 4.5E+02 0.0097 21.0 8.0 81 107-190 74-157 (160)
391 PRK06194 hypothetical protein; 20.5 5.4E+02 0.012 21.9 12.1 31 14-52 7-37 (287)
392 PF03486 HI0933_like: HI0933-l 20.5 70 0.0015 30.4 2.1 25 47-73 3-27 (409)
393 PRK06300 enoyl-(acyl carrier p 20.4 1.3E+02 0.0027 27.1 3.7 9 110-118 120-128 (299)
394 PRK09004 FMN-binding protein M 20.4 2.7E+02 0.0058 22.2 5.3 8 67-74 111-118 (146)
395 PRK13011 formyltetrahydrofolat 20.4 77 0.0017 28.7 2.3 22 2-23 78-99 (286)
396 cd07359 PCA_45_Doxase_B_like S 20.4 2.3E+02 0.0049 24.9 5.3 36 7-43 130-165 (271)
397 PRK05782 bifunctional sirohydr 20.4 6.5E+02 0.014 23.4 8.4 62 15-81 8-75 (335)
398 PRK07152 nadD putative nicotin 20.3 1.3E+02 0.0028 27.6 3.8 29 14-42 1-29 (342)
399 PRK01911 ppnK inorganic polyph 20.3 5.7E+02 0.012 23.1 7.9 58 14-75 1-94 (292)
400 PRK03372 ppnK inorganic polyph 20.2 2.4E+02 0.0052 25.8 5.5 35 108-148 71-105 (306)
401 PRK10886 DnaA initiator-associ 20.2 5.4E+02 0.012 21.8 8.2 31 28-58 25-55 (196)
402 PRK07041 short chain dehydroge 20.1 1.2E+02 0.0026 24.9 3.4 27 48-75 1-27 (230)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=7.4e-55 Score=366.95 Aligned_cols=178 Identities=43% Similarity=0.830 Sum_probs=170.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV 93 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~ 93 (230)
++|||||||+.++++.|++.|++||++||++||+||||||..|+|+|++++|+++||+|+||+|..+...+.+++.++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 47999999999999999999999999999999999999995599999999999999999999999887777778888899
Q ss_pred eecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccC
Q 026977 94 RPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRN 173 (230)
Q Consensus 94 i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~ 173 (230)
+++++|++||.+|++.|||||+||||+|||+|++++|+|.|+|+|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHHHhh
Q 026977 174 IIVSAPNAKELVQKLEEY 191 (230)
Q Consensus 174 ~i~~~~d~ee~~~~l~~~ 191 (230)
.++++||++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999763
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=2.1e-44 Score=309.42 Aligned_cols=182 Identities=36% Similarity=0.668 Sum_probs=169.4
Q ss_pred CcceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCC
Q 026977 12 RFKRVCVFCGSSTGKRNC-YSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETV 90 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~-~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~ 90 (230)
.+++|||||||+...++. |++.|++||+.||++|+.|+||||+ |+|+|+++||.++||.||||+|......+.++...
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~ 91 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEV 91 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcccc
Confidence 468899999999877666 9999999999999999888888888 99999999999999999999998876666445556
Q ss_pred ceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCC--CCcEEEEecCCcchHHHHHHH-HHHHcCCC
Q 026977 91 GEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLLNVDGYYNYLLTFID-KAVDDGFI 167 (230)
Q Consensus 91 ~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~--~kPivlln~~G~~~~l~~~l~-~~~~~gfi 167 (230)
++++++++|++||..|+++|||||++|||+||++|++++|+|.|++.| .+|+++++.++||+++.+|++ +++.++++
T Consensus 92 ~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i 171 (205)
T COG1611 92 IELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEGLI 171 (205)
T ss_pred ceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhhcC
Confidence 788999999999999999999999999999999999999999999998 899989999999999999998 89999999
Q ss_pred CccccCcEEEcCCHHHHHHHHHhhcCC
Q 026977 168 KPSQRNIIVSAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 168 ~~~~~~~i~~~~d~ee~~~~l~~~~~~ 194 (230)
++...+++.++||++++++.+.++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 172 SEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred ChhhhhheeeecCHHHHHHHHHHhccc
Confidence 999999999999999999999998866
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=8.4e-42 Score=282.83 Aligned_cols=157 Identities=25% Similarity=0.389 Sum_probs=134.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGE 92 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e 92 (230)
|++|||||||+ .++.|++.|++||++||++|++|||||+. |+|++++++|+++||+|+||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999988 47899999999999999999999999888 99999999999999999999998763 2333334
Q ss_pred EeecCC-HHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccc
Q 026977 93 VRPVAD-MHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQ 171 (230)
Q Consensus 93 ~i~~~~-m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~ 171 (230)
+++.++ +++||++|+++|||||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c-
Confidence 444444 488999999999999999999999999999998 489999999999999998865 44444444 2
Q ss_pred cCcEEEcCCHHHHHHHH
Q 026977 172 RNIIVSAPNAKELVQKL 188 (230)
Q Consensus 172 ~~~i~~~~d~ee~~~~l 188 (230)
.+.+++||+|+++++
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999875
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=6.3e-39 Score=258.07 Aligned_cols=131 Identities=44% Similarity=0.769 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCCeEEEEeCCcccc-cccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcC
Q 026977 58 MGLVSKAVHHGGGNVIGIIPRTLMN-KEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLG 136 (230)
Q Consensus 58 M~ava~gA~~~GG~viGI~P~~~~~-~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg 136 (230)
|+|+++||+++||+|+||+|..+.+ ++.+++.+++++.+++|++||.+|+++|||||+||||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 667778889999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 026977 137 IHDK-PVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKL 188 (230)
Q Consensus 137 ~~~k-Pivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 188 (230)
.++| ||+|+|.+|||+++++|+++|+++||++++..+.+++++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 9887 999999999999999999999999999999999999999999999876
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.64 E-value=1.4e-14 Score=126.00 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=119.9
Q ss_pred ccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCccc---
Q 026977 5 GKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLM--- 81 (230)
Q Consensus 5 ~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~--- 81 (230)
|.+...++ +.|+|.| ||.. .+...+.|+++++.|+++|++||+|+.. |+|.++.++|+++||.+|+|+|..+.
T Consensus 37 Gn~~ll~~-~~iaIvG-sR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~y 112 (220)
T TIGR00732 37 GDLPLLSQ-RKVAIVG-TRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIY 112 (220)
T ss_pred CCcccccC-CeEEEEc-CCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCC
Confidence 44554444 6899997 5543 4667788999999999999999999998 99999999999999999999997753
Q ss_pred ccc-------cCCCC---CceE-----eecCCHHHHHHHHHhhcCeEEEecCC--cccHHHHHHHHHHHHcCCCCCcEEE
Q 026977 82 NKE-------ITGET---VGEV-----RPVADMHQRKAEMARHSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGL 144 (230)
Q Consensus 82 ~~e-------~~~~~---~~e~-----i~~~~m~~Rk~~m~~~sDa~I~lPGG--~GTL~El~~~~t~~qlg~~~kPivl 144 (230)
|.+ ...+. +++. .....|..|++++..+||++|++..+ .||+.++-.++.+ +|||+.
T Consensus 113 p~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~ 186 (220)
T TIGR00732 113 PRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFA 186 (220)
T ss_pred chhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEE
Confidence 211 00011 1111 12346789999999999999999886 8999999888754 899999
Q ss_pred EecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 026977 145 LNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQK 187 (230)
Q Consensus 145 ln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~ 187 (230)
+... .+++..+.-..++++|- ....+++|+++.
T Consensus 187 ~pg~-~~~~~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 187 YPGD-LNSPESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred EcCC-CCCccchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 9643 44444444455666662 345678888764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.37 E-value=1.3e-11 Score=106.83 Aligned_cols=151 Identities=18% Similarity=0.165 Sum_probs=90.9
Q ss_pred ccccCcC-CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCccc--
Q 026977 5 GKIQKNS-RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLM-- 81 (230)
Q Consensus 5 ~~~~~~~-~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~-- 81 (230)
|.+...+ ..+.|+|.| ||.. ++...+.|+++++.|+++|+++|+|+.. |+..++.++|+++||.+|+|+|..+.
T Consensus 35 G~~~ll~~~~~~iaIvG-sR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~ 111 (212)
T PF02481_consen 35 GNLSLLNNKQPSIAIVG-SRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNI 111 (212)
T ss_dssp --TT-GGGGS-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-
T ss_pred CCCchhcccCceEEEEc-CCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccc
Confidence 5555555 467899997 5544 5777899999999999999999999998 99999999999999999999987652
Q ss_pred -cccc-------C-CCCC-------ceEeecCCHHHHHHHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEE
Q 026977 82 -NKEI-------T-GETV-------GEVRPVADMHQRKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVG 143 (230)
Q Consensus 82 -~~e~-------~-~~~~-------~e~i~~~~m~~Rk~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPiv 143 (230)
|.+. . .+.+ ..-.....|.+|++++..+||++|++- =..||+.-+-.++.+ +|||+
T Consensus 112 yP~~n~~l~~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~ 185 (212)
T PF02481_consen 112 YPKENRELAERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVF 185 (212)
T ss_dssp SSGGGHHHHHHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EE
T ss_pred cchhhHHHHHHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEE
Confidence 3210 0 1110 111223466899999999999999984 588999988888765 89999
Q ss_pred EEecCCcchHHHHHHHHHHHcC
Q 026977 144 LLNVDGYYNYLLTFIDKAVDDG 165 (230)
Q Consensus 144 lln~~G~~~~l~~~l~~~~~~g 165 (230)
++... .+++....-..++++|
T Consensus 186 ~vp~~-~~~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 186 AVPGP-IDDPNSEGNNELIKEG 206 (212)
T ss_dssp E-----TT-GGGHHHHHHHHTT
T ss_pred EEeCC-CCCcccHHHHHHHHcC
Confidence 98543 5555445555566666
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.24 E-value=3.7e-10 Score=105.20 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=121.0
Q ss_pred cccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCccc--
Q 026977 4 EGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLM-- 81 (230)
Q Consensus 4 ~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~-- 81 (230)
.|.+...+ .+.|+|.| ||.. .+...+.++++++.||++|++||+|+.. |+..++.++|+++||++|+|++..+.
T Consensus 99 ~G~~~~l~-~~~iaiVG-sR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~ 174 (374)
T PRK10736 99 SGELAALH-SPQLAVVG-SRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENI 174 (374)
T ss_pred eCCHHHcc-CCeEEEEC-CCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCcc
Confidence 35544433 35799997 5653 5677788999999999999999999998 99999999999999999999986653
Q ss_pred -ccc-------c-CCCCC--ceE-----eecCCHHHHHHHHHhhcCeEEEe--cCCcccHHHHHHHHHHHHcCCCCCcEE
Q 026977 82 -NKE-------I-TGETV--GEV-----RPVADMHQRKAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVG 143 (230)
Q Consensus 82 -~~e-------~-~~~~~--~e~-----i~~~~m~~Rk~~m~~~sDa~I~l--PGG~GTL~El~~~~t~~qlg~~~kPiv 143 (230)
|.+ . ..+.+ +|. ....+|..||+++...|+++||+ +=.+|||.=.-.++. .+|+|+
T Consensus 175 YP~~n~~L~~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~Vf 248 (374)
T PRK10736 175 YPRRHARLAESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVF 248 (374)
T ss_pred CCHhHHHHHHHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEE
Confidence 321 1 00100 111 11357789999999999999998 457889886666664 399999
Q ss_pred EEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 026977 144 LLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEE 190 (230)
Q Consensus 144 lln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 190 (230)
.+.+. .+++.-+--.+++.+| -..+.+++|+++.+..
T Consensus 249 avPG~-i~~~~s~G~n~LI~~G---------A~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 249 ALPGP-IGNPGSEGPHWLIKQG---------AYLVTSPEDILENLQF 285 (374)
T ss_pred EEcCC-CCCccchhHHHHHHCC---------CEEeCCHHHHHHHhhh
Confidence 98543 4444444444566655 2556789999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.97 E-value=1.4e-08 Score=94.02 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=111.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcc---cccc------
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTL---MNKE------ 84 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~---~~~e------ 84 (230)
+.|+|.| ||.. ...-.+.++.|++.|+++|+++|+|+.. |+..+++++|++++|++|+|+...+ +|++
T Consensus 112 ~~vaIVG-sR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVG-SRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEe-CCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 6899997 5654 5677889999999999999999999998 9999999999999999999987654 2321
Q ss_pred -cCCCC--Cc-----eEeecCCHHHHHHHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 026977 85 -ITGET--VG-----EVRPVADMHQRKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYL 154 (230)
Q Consensus 85 -~~~~~--~~-----e~i~~~~m~~Rk~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l 154 (230)
...+. ++ .-+...+|..||+++..+||++||+- =-+|+|.=.-.++. .++.|+.+.++ ..++.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 00111 01 12234588999999999999999984 46899887776665 38888887653 22221
Q ss_pred HHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 026977 155 LTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEY 191 (230)
Q Consensus 155 ~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 191 (230)
..--..++++|- ..+.+.+++++.+...
T Consensus 262 s~G~~~LI~~GA---------~lv~~~~dil~~l~~~ 289 (350)
T COG0758 262 SEGCNKLIKEGA---------KLVTSAEDILEELNAL 289 (350)
T ss_pred ccchHHHHHccc---------hhcccHHHHHHHhhhh
Confidence 111223444541 3344556777666543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.83 E-value=0.018 Score=47.31 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=53.0
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccc-cCCCCCc-eEeecCCHHHHHHHHHhhcCeEEEecCCc---cc
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE-ITGETVG-EVRPVADMHQRKAEMARHSDCFIALPGGY---GT 122 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e-~~~~~~~-e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~---GT 122 (230)
||+||-. |+..|+-+.|+++|-..=|-.|......+ ..+..|. ......+...|.++.++-||+-++|-=|- ||
T Consensus 1 IiSGGQT-GvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQT-GVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE----T-THHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCccc-cHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 5788765 99999999999999888888887654332 2233331 12234678999999999999988885322 44
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 123 LEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 123 L~El~~~~t~~qlg~~~kPivlln~ 147 (230)
++...++ ..|+||+.+++.
T Consensus 80 --~lT~~~a----~~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 --ALTVEFA----RKHGKPCLHIDL 98 (145)
T ss_dssp --HHHHHHH----HHTT--EEEETS
T ss_pred --HHHHHHH----HHhCCCEEEEec
Confidence 2332232 268999998854
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.27 E-value=0.04 Score=42.45 Aligned_cols=46 Identities=35% Similarity=0.311 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhhcCeEEEecC----CcccHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 97 ADMHQRKAEMARHSDCFIALPG----GYGTLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 97 ~~m~~Rk~~m~~~sDa~I~lPG----G~GTL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
....+|....++.||++|+.-. ..||.-|+..++.+ +|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 3457888889999999999654 59999999999865 8999999654
No 11
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.01 E-value=0.47 Score=41.98 Aligned_cols=124 Identities=24% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCC-eEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCccc
Q 026977 44 RRLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGT 122 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GT 122 (230)
.++.|||=||. |.- .+.+.+.+..+ .++-+-|... +.....+ .+.-.. ...-.-.+..||++|-- ||++|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni-~~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI-HVRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE-EEeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 46677776665 555 55566666554 3333322211 1111111 122111 12223346889976665 88999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 026977 123 LEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEE 190 (230)
Q Consensus 123 L~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 190 (230)
+.|... .+||++++...++++.... .+.+.+.|....-..+ .-+++.+.++|++
T Consensus 263 ~~Ea~~---------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~~~~~~----~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 263 ISEALA---------LGKPALVIPRPGQDEQEYN-ARKLEELGLGIVLSQE----DLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---------cCCCEEEEeCCCCchHHHH-HHHHHHCCCeEEcccc----cCCHHHHHHHHhc
Confidence 998863 3999999987777776544 3445555543211111 1178888888865
No 12
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=94.41 E-value=2 Score=38.10 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC--CHH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP--NAK 182 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~--d~e 182 (230)
-++..||++|. ++|..|+-|.. . .++|++..+..+.-.......+.+.+. ....+.-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea~---~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAELA---A------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---H------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 46788998886 55555666554 2 399999986533211111001111111 122233233 499
Q ss_pred HHHHHHHhhcCC
Q 026977 183 ELVQKLEEYVPV 194 (230)
Q Consensus 183 e~~~~l~~~~~~ 194 (230)
++.+.|.+....
T Consensus 310 ~l~~~i~~ll~~ 321 (348)
T TIGR01133 310 KLLEALLKLLLD 321 (348)
T ss_pred HHHHHHHHHHcC
Confidence 999999887643
No 13
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=94.17 E-value=0.93 Score=38.33 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=62.0
Q ss_pred cceEEEEcCCCCC-------CChHHHHHHHHHHHH---HHHCCCeE-EEcCCCcchHHHHHHHHHhcC-----CeEEEEe
Q 026977 13 FKRVCVFCGSSTG-------KRNCYSDAAIDLAHE---LVARRLDL-VYGGGSIGLMGLVSKAVHHGG-----GNVIGII 76 (230)
Q Consensus 13 ~~~V~VfggS~~~-------~~~~~~~~A~~LG~~---LA~~g~~l-VtGGg~~GlM~ava~gA~~~G-----G~viGI~ 76 (230)
|+++||-| .|+- .+|.+...-..|-+. +-+.|++- ++||. .|+---++..+++.. -+.+-++
T Consensus 1 M~~~~~TG-yR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Gga-lG~D~waae~vl~LK~~yp~ikL~~v~ 78 (177)
T PF06908_consen 1 MKRCCFTG-YRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGA-LGVDLWAAEVVLELKKEYPEIKLALVL 78 (177)
T ss_dssp --EEEEEE---GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT-TT-EEEEEE
T ss_pred CeEEEEEe-cChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCc-ccHHHHHHHHHHHHHhhhhheEEEEEE
Confidence 34555554 4433 345554444444443 33468775 55655 499999999999864 3566777
Q ss_pred CCcccccccCC----------CCCceEeec--------CCHHHHHHHHHhhcCeEEEe-----cCCcccHHHHHHHHHHH
Q 026977 77 PRTLMNKEITG----------ETVGEVRPV--------ADMHQRKAEMARHSDCFIAL-----PGGYGTLEELLEVITWA 133 (230)
Q Consensus 77 P~~~~~~e~~~----------~~~~e~i~~--------~~m~~Rk~~m~~~sDa~I~l-----PGG~GTL~El~~~~t~~ 133 (230)
|-......... ...+..+.. ..|..|++.|+++||.+|++ +||....-+...-...
T Consensus 79 Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~- 157 (177)
T PF06908_consen 79 PFENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQE- 157 (177)
T ss_dssp SSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHH-
T ss_pred cccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhh-
Confidence 75433221100 001222222 23579999999999999987 3333333333322221
Q ss_pred HcCCCCCcEEEEec
Q 026977 134 QLGIHDKPVGLLNV 147 (230)
Q Consensus 134 qlg~~~kPivlln~ 147 (230)
.++.||.++..
T Consensus 158 ---~~~y~i~~I~~ 168 (177)
T PF06908_consen 158 ---QKGYPIDLIDP 168 (177)
T ss_dssp ---HH---EEEE-H
T ss_pred ---ccCCeEEEecH
Confidence 24678888754
No 14
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=93.86 E-value=1 Score=42.07 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcc--hHHHHHHHHHHHcCCCCccccCc
Q 026977 97 ADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NYLLTFIDKAVDDGFIKPSQRNI 174 (230)
Q Consensus 97 ~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~--~~l~~~l~~~~~~gfi~~~~~~~ 174 (230)
..|.+.....+..||.+|. -.|..|+.|++.+ ++|.+++... ++ ++-..-.+.+.+.|... .
T Consensus 240 ~~f~~dm~~~~~~ADLvIs-RaGa~Ti~E~~a~---------g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa~-----~ 303 (357)
T COG0707 240 LPFIDDMAALLAAADLVIS-RAGALTIAELLAL---------GVPAILVPYP-PGADGHQEYNAKFLEKAGAAL-----V 303 (357)
T ss_pred eeHHhhHHHHHHhccEEEe-CCcccHHHHHHHh---------CCCEEEeCCC-CCccchHHHHHHHHHhCCCEE-----E
Confidence 3444445566788996554 5567899999844 8999998643 33 22111123344444321 1
Q ss_pred EEEcC-CHHHHHHHHHhhcCC
Q 026977 175 IVSAP-NAKELVQKLEEYVPV 194 (230)
Q Consensus 175 i~~~~-d~ee~~~~l~~~~~~ 194 (230)
+.=.+ +++++.+.|.+....
T Consensus 304 i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 304 IRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred eccccCCHHHHHHHHHHHhcC
Confidence 11111 477888888887554
No 15
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=93.50 E-value=2.6 Score=38.34 Aligned_cols=77 Identities=23% Similarity=0.204 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 98 DMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 98 ~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
++.+.-..++..||++|.-+|| .|+.|. +.. ++|+++.+..+.... .-.+.+.+.|+ ...
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg-~t~~EA---~a~------g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~ 321 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGG-ITLSEA---AAL------GVPVILYKPVPGQEK--ENAMYFERKGA--------AVV 321 (380)
T ss_pred echhhHHHHHHhccEEEeCCCc-hHHHHH---HHh------CCCEEECCCCCCcch--HHHHHHHhCCc--------EEE
Confidence 3333444567899988865554 465554 433 899988764322211 11122333443 345
Q ss_pred cCCHHHHHHHHHhhcCC
Q 026977 178 APNAKELVQKLEEYVPV 194 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~ 194 (230)
..|++++.+.|.+....
T Consensus 322 ~~~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 322 IRDDEEVFAKTEALLQD 338 (380)
T ss_pred ECCHHHHHHHHHHHHCC
Confidence 68999999998887543
No 16
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.49 E-value=5.2 Score=35.51 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCc-chHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~-~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
..-..+...||++|. ++|..|+-|. ++. ++|++.....+. .+.-....+.+.+.| ...+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~Ea---m~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAEL---AAL------GLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHHH---HHh------CCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecC
Confidence 334456789998885 5555665544 443 999998754321 111000011222222 11222222
Q ss_pred --CHHHHHHHHHhhcC
Q 026977 180 --NAKELVQKLEEYVP 193 (230)
Q Consensus 180 --d~ee~~~~l~~~~~ 193 (230)
|++++.+.|.+...
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 89999999988754
No 17
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.86 E-value=1.8 Score=46.52 Aligned_cols=153 Identities=19% Similarity=0.213 Sum_probs=93.8
Q ss_pred eEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcC-----CeE--EEEeCCccccc--
Q 026977 15 RVCVFCGSSTGK-RNCYSDAAID-LAHELVARRLDLVYGGGSIGLMGLVSKAVHHGG-----GNV--IGIIPRTLMNK-- 83 (230)
Q Consensus 15 ~V~VfggS~~~~-~~~~~~~A~~-LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~G-----G~v--iGI~P~~~~~~-- 83 (230)
.|.|-||...-. .|.+.+.-++ |-+..-..|.=|+|||-.+|+|.-+.+++++++ +++ |||-|-....+
T Consensus 120 vISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr~ 199 (1381)
T KOG3614|consen 120 VISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNRD 199 (1381)
T ss_pred EEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeechh
Confidence 689999877543 4555544444 434333469999999999999999999999863 243 66755332111
Q ss_pred --------------ccC-------CCCCceEeecC---------CHHHHHHHHHhh------c----C---eEEEecCCc
Q 026977 84 --------------EIT-------GETVGEVRPVA---------DMHQRKAEMARH------S----D---CFIALPGGY 120 (230)
Q Consensus 84 --------------e~~-------~~~~~e~i~~~---------~m~~Rk~~m~~~------s----D---a~I~lPGG~ 120 (230)
+.+ ++..+..+.++ ...-|+++=--. + + .++++.||.
T Consensus 200 ~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~ 279 (1381)
T KOG3614|consen 200 DLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGGP 279 (1381)
T ss_pred hhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCCc
Confidence 000 11112222221 112333321111 1 1 567789999
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHH-HHHHcCCCCccc
Q 026977 121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFID-KAVDDGFIKPSQ 171 (230)
Q Consensus 121 GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~-~~~~~gfi~~~~ 171 (230)
+|+.=+.+..+. ..+.|++++.+.|--.+++.++- .....|+++...
T Consensus 280 nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~ 327 (1381)
T KOG3614|consen 280 NTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAE 327 (1381)
T ss_pred hHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHH
Confidence 999988776653 34569999999998899999874 455666655443
No 18
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=92.17 E-value=3.6 Score=37.73 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEE-EcCCHHHH
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIV-SAPNAKEL 184 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~-~~~d~ee~ 184 (230)
++..||++ +..||.||+.|... +++|++++... .+.. .+.+.+.+.|.-. .+. -.-+++++
T Consensus 288 ll~~~~~~-I~hgG~~t~~Eal~---------~G~P~v~~p~~--~dq~-~~a~~l~~~g~g~-----~l~~~~~~~~~l 349 (392)
T TIGR01426 288 ILKKADAF-ITHGGMNSTMEALF---------NGVPMVAVPQG--ADQP-MTARRIAELGLGR-----HLPPEEVTAEKL 349 (392)
T ss_pred HHhhCCEE-EECCCchHHHHHHH---------hCCCEEecCCc--ccHH-HHHHHHHHCCCEE-----EeccccCCHHHH
Confidence 45789954 56889999988763 49999998532 2221 2233444444211 111 12257888
Q ss_pred HHHHHhhcCC
Q 026977 185 VQKLEEYVPV 194 (230)
Q Consensus 185 ~~~l~~~~~~ 194 (230)
.+.+.+....
T Consensus 350 ~~ai~~~l~~ 359 (392)
T TIGR01426 350 REAVLAVLSD 359 (392)
T ss_pred HHHHHHHhcC
Confidence 8888776543
No 19
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=92.13 E-value=3.8 Score=37.67 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 026977 103 KAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAK 182 (230)
Q Consensus 103 k~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 182 (230)
-..++..||++|.-+| .+|+.|.+ . .++|+++.+.-.. ...-+ .+.+.+.|. -....|++
T Consensus 276 ~~~l~~aaDv~V~~~g-~~ti~EAm---a------~g~PvI~~~~~pg-qe~gn-~~~i~~~g~--------g~~~~~~~ 335 (382)
T PLN02605 276 MEEWMGACDCIITKAG-PGTIAEAL---I------RGLPIILNGYIPG-QEEGN-VPYVVDNGF--------GAFSESPK 335 (382)
T ss_pred HHHHHHhCCEEEECCC-cchHHHHH---H------cCCCEEEecCCCc-cchhh-HHHHHhCCc--------eeecCCHH
Confidence 4456799999887554 57876654 3 3899999873110 00000 122233332 12358999
Q ss_pred HHHHHHHhhcC
Q 026977 183 ELVQKLEEYVP 193 (230)
Q Consensus 183 e~~~~l~~~~~ 193 (230)
++.+.+.+...
T Consensus 336 ~la~~i~~ll~ 346 (382)
T PLN02605 336 EIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHc
Confidence 99999988754
No 20
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.69 E-value=3.4 Score=33.61 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCeEEEecC-CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc
Q 026977 100 HQRKAEMARHSDCFIALPG-GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA 178 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPG-G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 178 (230)
.-|.+.+++.||.+|+.-| -+=--+-.|.+=... -.+||++++.....--+|.+. + ..-..++
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~---AlgKplI~lh~~~~~HpLKEv-d------------a~A~a~~ 126 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA---ALGKPLITLHPEELHHPLKEV-D------------AAALAVA 126 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-h------------HhhHhhh
Confidence 4688889999999999876 222222223221111 138999999887666666552 1 1224668
Q ss_pred CCHHHHHHHHH
Q 026977 179 PNAKELVQKLE 189 (230)
Q Consensus 179 ~d~ee~~~~l~ 189 (230)
.+|+++++.|.
T Consensus 127 et~~Qvv~iL~ 137 (141)
T PF11071_consen 127 ETPEQVVEILR 137 (141)
T ss_pred CCHHHHHHHHH
Confidence 89999999884
No 21
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=91.51 E-value=2 Score=30.97 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=44.1
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCC
Q 026977 17 CVFCGSSTGKRNCYSDAAIDLAHELVAR-RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (230)
Q Consensus 17 ~VfggS~~~~~~~~~~~A~~LG~~LA~~-g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~ 78 (230)
.+|||++.-.| +...-..|-+.+++. ...||+||.+.|....+.+=|.+.|-.++-+-|+
T Consensus 6 Vli~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 6 VLITGGRDWTD--HELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred EEEEECCcccc--HHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 45556776543 334555677777775 6778999995699999999999998888777554
No 22
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=91.19 E-value=4.4 Score=37.53 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc
Q 026977 99 MHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA 178 (230)
Q Consensus 99 m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 178 (230)
+.++-..++..||++|.-|||. |+.|.. .. ++|+++.+..+- ....+ ...+.+.|+ -...
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~EA~---a~------G~PvI~~~~~pg-qe~~N-~~~~~~~G~--------g~~~ 322 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TISEGL---AR------CIPMIFLNPAPG-QELEN-ALYFEEKGF--------GKIA 322 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHHHHH---Hh------CCCEEECCCCCC-cchhH-HHHHHhCCc--------EEEe
Confidence 3344556779999998877764 765554 32 899999864321 11111 011223332 2346
Q ss_pred CCHHHHHHHHHhhcC
Q 026977 179 PNAKELVQKLEEYVP 193 (230)
Q Consensus 179 ~d~ee~~~~l~~~~~ 193 (230)
+|++++.+.+.+...
T Consensus 323 ~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 323 DTPEEAIKIVASLTN 337 (391)
T ss_pred CCHHHHHHHHHHHhc
Confidence 789999888887653
No 23
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=90.97 E-value=2.1 Score=38.74 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCC-------cc-ccCcE
Q 026977 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIK-------PS-QRNII 175 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~-------~~-~~~~i 175 (230)
..+...||++|. ++|..|+ |.. . .++|+++....+-|..... +++...+++. .. ...++
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVGYKVSPLTFWIA--KRLVKVPYVSLPNLLAGRELVPELL 322 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEEEccCHHHHHHH--HHHHcCCeeehHHHhcCCCcchhhc
Confidence 456789997766 6778887 663 2 2999987633233332111 2222221111 10 11223
Q ss_pred EEcCCHHHHHHHHHhhcCC
Q 026977 176 VSAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 176 ~~~~d~ee~~~~l~~~~~~ 194 (230)
.-..|++++.+.+.+....
T Consensus 323 ~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 323 QEEATPEKLARALLPLLAD 341 (380)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 3345889999998887544
No 24
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.58 E-value=12 Score=34.24 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=53.3
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccC--c-----EEEc
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRN--I-----IVSA 178 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~--~-----i~~~ 178 (230)
+...||+|||-+-.+-=+.|.. + .+|||.++...+--+.+..|++.|.+.|.+..-... . +.-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA~---~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEAA---A------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHHH---H------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 6788999999877665555544 3 389999998776556677788889999988765433 1 3334
Q ss_pred CCHHHHHHHHHhh
Q 026977 179 PNAKELVQKLEEY 191 (230)
Q Consensus 179 ~d~ee~~~~l~~~ 191 (230)
++.+.+.+.|.+.
T Consensus 296 ~et~r~A~~i~~r 308 (311)
T PF06258_consen 296 DETDRVAAEIRER 308 (311)
T ss_pred cHHHHHHHHHHHH
Confidence 5566666666553
No 25
>PRK10565 putative carbohydrate kinase; Provisional
Probab=90.06 E-value=1.3 Score=43.24 Aligned_cols=127 Identities=21% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCcchHHHH---HHHHHhcC-CeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCC
Q 026977 44 RRLDLVYGGGSIGLMGLV---SKAVHHGG-GNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGG 119 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~av---a~gA~~~G-G~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG 119 (230)
+|+.+|-||.. +.++|+ +++|+..| |.|.=+.|....+ ......-|+++.....+.-.-+...+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 69999999987 777775 55666665 6666666654211 1111112333322111112223467899888776
Q ss_pred cccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 026977 120 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLE 189 (230)
Q Consensus 120 ~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 189 (230)
.|+-++...++.. +...++|+ +++.++ +.++.. ... . .....++.++.|+.+.+.
T Consensus 330 lg~~~~~~~~~~~--~~~~~~P~-VLDAda-----L~ll~~---~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQK--VENFRKPM-LWDADA-----LNLLAI---NPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHHH--HHhcCCCE-EEEchH-----HHHHhh---Ccc-c---cCCeEECCCHHHHHHHhC
Confidence 6665544443322 22457897 567766 232321 110 1 124578899999888874
No 26
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=89.52 E-value=12 Score=33.58 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-eEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccH
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTL 123 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL 123 (230)
++.|||||+. | ...+.+...+... .++-.-++.. .... + ..+.+.....+.-..++..||++|.- ||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~-~~~~-~---~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA-KNSY-N---ENVEIRRITTDNFKELIKNAELVITH-GGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC-cccc-C---CCEEEEECChHHHHHHHHhCCEEEEC-CChHHH
Confidence 5678998664 5 4556555444443 2221122211 0111 1 12222221113444567889976664 677897
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCC
Q 026977 124 EELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGF 166 (230)
Q Consensus 124 ~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gf 166 (230)
.|.. . +++|++++...+.++...+ .+.+.+.|.
T Consensus 261 ~Ea~---~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEAL---S------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHH---H------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 7754 2 4999999987666664333 344555554
No 27
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=89.51 E-value=14 Score=33.94 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCc---chHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY---YNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~---~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
.++..||++| .-||.+|+.|+.. +++|.+++..... .+... ..+.+.+.|....-.. -.-++
T Consensus 248 ~~~~~adlvI-sr~G~~t~~E~~~---------~g~P~I~iP~~~~~~~~~Q~~-Na~~l~~~g~~~~l~~----~~~~~ 312 (352)
T PRK12446 248 DILAITDFVI-SRAGSNAIFEFLT---------LQKPMLLIPLSKFASRGDQIL-NAESFERQGYASVLYE----EDVTV 312 (352)
T ss_pred HHHHhCCEEE-ECCChhHHHHHHH---------cCCCEEEEcCCCCCCCchHHH-HHHHHHHCCCEEEcch----hcCCH
Confidence 3678999554 5566778888763 3899999843211 12222 2344555553321111 11167
Q ss_pred HHHHHHHHhhc
Q 026977 182 KELVQKLEEYV 192 (230)
Q Consensus 182 ee~~~~l~~~~ 192 (230)
+++.+.+.+..
T Consensus 313 ~~l~~~l~~ll 323 (352)
T PRK12446 313 NSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 28
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=89.12 E-value=6.8 Score=35.80 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=43.1
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKEL 184 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 184 (230)
.++..+|+|| --||.||..|.. .+++|++++.. +.|. ..+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ-~~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQ-PFWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCc-HHHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3467799776 677789998876 24999999853 2332 22234555555322111111 277888
Q ss_pred HHHHHhhcC
Q 026977 185 VQKLEEYVP 193 (230)
Q Consensus 185 ~~~l~~~~~ 193 (230)
.+.+.+...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 887777654
No 29
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.08 E-value=10 Score=34.68 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=43.4
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCc-chHHHHHHHHHHHcCCCCcccc
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNYLLTFIDKAVDDGFIKPSQR 172 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~-~~~l~~~l~~~~~~gfi~~~~~ 172 (230)
|+..||++|+---.+.-..|... .+|||+++-.+++ -..+.-|++.+++.+..++-..
T Consensus 241 ~La~Adyii~TaDSinM~sEAas---------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAAS---------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HHhhcceEEEecchhhhhHHHhc---------cCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 67889999998777777766642 3899999988777 5666777788887776554433
No 30
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=88.80 E-value=7.5 Score=31.72 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHHHHHHhhcCeEEEecC-CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc
Q 026977 100 HQRKAEMARHSDCFIALPG-GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA 178 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPG-G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 178 (230)
.-|-+.+++.||.+|+.-| -+=--+-.|.+=... -.+||++++.....--+|.+ ++. .-.-++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKE-vda------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKE-VDN------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHH-HhH------------HHHHHh
Confidence 4677888999999999766 333333333321111 13899999987766666655 221 223568
Q ss_pred CCHHHHHHHHH
Q 026977 179 PNAKELVQKLE 189 (230)
Q Consensus 179 ~d~ee~~~~l~ 189 (230)
.+|+.+++.|.
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 89999999884
No 31
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=88.50 E-value=13 Score=34.59 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=42.5
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCC-------Ccc-ccCcEEE
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFI-------KPS-QRNIIVS 177 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi-------~~~-~~~~i~~ 177 (230)
.+..||++|.-. |..|+ |++. .++|+++...-..+..++. ++++.-.++ +.. ..+++.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 568899766555 66687 6652 3899988743333332221 222222221 111 1233444
Q ss_pred cCCHHHHHHHHHhhcCC
Q 026977 178 APNAKELVQKLEEYVPV 194 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~ 194 (230)
.-+++.+.+.+.++...
T Consensus 331 ~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 331 ECTPHPLAIALLLLLEN 347 (385)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 45899999988887644
No 32
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=88.00 E-value=6.5 Score=34.92 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
...-..++..||.+|. +|| +|+-|+... ++|++++..
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~~a~---------g~P~i~i~~ 268 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWERCCL---------GLPSLAICL 268 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHHHHc---------CCCEEEEEe
Confidence 3444456789998888 666 898887633 899999864
No 33
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=85.92 E-value=5.6 Score=33.63 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCeEEEe--cCC----cccHHHHHHHHHHHHcCCCCCcEEEEecC--CcchHHHHHHHHH
Q 026977 100 HQRKAEMARHSDCFIAL--PGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNYLLTFIDKA 161 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~l--PGG----~GTL~El~~~~t~~qlg~~~kPivlln~~--G~~~~l~~~l~~~ 161 (230)
.+=...++++||++|+. |=- .||.-|+-.++.+ +||++.+..+ .+...+...+...
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~~~~~~r~~~~~~~~ 122 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDAANYASRLNAHLGEV 122 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecccchhhHHHHhHHHH
Confidence 34445578999999987 445 8999999999875 9999998654 2344444444333
No 34
>PRK13660 hypothetical protein; Provisional
Probab=85.79 E-value=21 Score=30.37 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcC-----CeEEEEeCCcccccccCC----------CCCceEeec---
Q 026977 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGG-----GNVIGIIPRTLMNKEITG----------ETVGEVRPV--- 96 (230)
Q Consensus 35 ~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~G-----G~viGI~P~~~~~~e~~~----------~~~~e~i~~--- 96 (230)
++|-+++. .|+.-+.-||..|+---++..|++.. -+.+-++|.......... ...+.+..+
T Consensus 33 ~~l~~~~e-~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~ 111 (182)
T PRK13660 33 RKLIALLE-EGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISKR 111 (182)
T ss_pred HHHHHHHH-CCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecCC
Confidence 45555554 57765444444599999999999863 356667775432211000 011222211
Q ss_pred C-----CHHHHHHHHHhhcCeEEEe
Q 026977 97 A-----DMHQRKAEMARHSDCFIAL 116 (230)
Q Consensus 97 ~-----~m~~Rk~~m~~~sDa~I~l 116 (230)
. .|..|++.|+++||.+|++
T Consensus 112 ~y~~p~q~~~rn~fmv~~sd~~i~~ 136 (182)
T PRK13660 112 PYESPAQFRQYNQFMLEHTDGALLV 136 (182)
T ss_pred CCCChHHHHHHHHHHHHccCeEEEE
Confidence 1 2789999999999998887
No 35
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=84.93 E-value=2.1 Score=34.48 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=38.9
Q ss_pred HHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcc-hHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 026977 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY-NYLLTFIDKAVDDGFIKPSQRNIIVSAPNAK 182 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~-~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 182 (230)
..++..|| +|+--||.||+.|+.. .++|.+++...+.+ ++-...-..+.+.|.... ...-..+++
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~----~~~~~~~~~ 132 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKGAAIM----LDESELNPE 132 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCCCCCC----SECCC-SCC
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcCCccc----cCcccCCHH
Confidence 34568899 7777899999998863 38999988543322 122222233455554221 111122356
Q ss_pred HHHHHHHhhcCC
Q 026977 183 ELVQKLEEYVPV 194 (230)
Q Consensus 183 e~~~~l~~~~~~ 194 (230)
++.+.|.+....
T Consensus 133 ~L~~~i~~l~~~ 144 (167)
T PF04101_consen 133 ELAEAIEELLSD 144 (167)
T ss_dssp CHHHHHHCHCCC
T ss_pred HHHHHHHHHHcC
Confidence 666666665443
No 36
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=80.83 E-value=41 Score=29.96 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
..-..+...||++|.=+| |..+|.+ ..++|+++++..+.+.. .++.|. .+.+.+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---------~~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---------FLGVPVLNLRDRTERPE-------TVESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---------hcCCCEEeeCCCCccch-------hhheee-------EEecCCC
Confidence 344556788998885555 5544443 23899999864333222 222331 1333457
Q ss_pred HHHHHHHHHhhcCC
Q 026977 181 AKELVQKLEEYVPV 194 (230)
Q Consensus 181 ~ee~~~~l~~~~~~ 194 (230)
++++.+.+.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999989887544
No 37
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=79.49 E-value=52 Score=30.41 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=47.8
Q ss_pred eEeecCCHHHHHHHHHhhcCeEEEec---CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCC
Q 026977 92 EVRPVADMHQRKAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIK 168 (230)
Q Consensus 92 e~i~~~~m~~Rk~~m~~~sDa~I~lP---GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~ 168 (230)
.+++.+++. .-..+...||++++.| .+.|.- +.|++.. ++||+.-+..+-+.++.+ .+.+.|
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~~---~~~~~g--- 367 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIFE---RLLQAG--- 367 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHHH---HHHHCC---
Confidence 344445544 3445679999877642 122322 5666654 999997432222333333 333333
Q ss_pred ccccCcEEEcCCHHHHHHHHHhhcCC
Q 026977 169 PSQRNIIVSAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 169 ~~~~~~i~~~~d~ee~~~~l~~~~~~ 194 (230)
.+...+|++++.+.|.+....
T Consensus 368 -----~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 368 -----AAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred -----CeEEECCHHHHHHHHHHHhcC
Confidence 345578999999999887543
No 38
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=78.01 E-value=15 Score=32.42 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 026977 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 149 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G 149 (230)
++-..+...+|++++ .+|.++-+.+.++.... ..+++|+ +++.+|
T Consensus 84 ~~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~--~~~~~pv-VlDa~g 128 (272)
T TIGR00196 84 DEDEELLERYDVVVI-GPGLGQDPSFKKAVEEV--LELDKPV-VLDADA 128 (272)
T ss_pred HHHHhhhccCCEEEE-cCCCCCCHHHHHHHHHH--HhcCCCE-EEEhHH
Confidence 333344567787666 56688865544333222 2357886 456654
No 39
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=77.65 E-value=49 Score=31.23 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=72.6
Q ss_pred HHHCCCeEEEcCCCcc----hHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEe
Q 026977 41 LVARRLDLVYGGGSIG----LMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIAL 116 (230)
Q Consensus 41 LA~~g~~lVtGGg~~G----lM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~l 116 (230)
.+.+....++=|+. + +-+.+.+.+.+.+.++|=-... ... . ..+-....++..... ...+...||+| +-
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~-~~~-~-~~~~p~n~~v~~~~p--~~~~l~~ad~v-I~ 306 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGG-ARD-T-LVNVPDNVIVADYVP--QLELLPRADAV-IH 306 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEeccc-ccc-c-cccCCCceEEecCCC--HHHHhhhcCEE-Ee
Confidence 34456666655554 6 4566777777788887765543 111 0 011111233333332 22378899965 57
Q ss_pred cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEE-cCCHHHHHHHHHhhcCC
Q 026977 117 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVS-APNAKELVQKLEEYVPV 194 (230)
Q Consensus 117 PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~-~~d~ee~~~~l~~~~~~ 194 (230)
.||.||..|.. .+++|++++-.. +|.... .+...+.|.= ..+.+ .-+++.+.+.+.+....
T Consensus 307 hGG~gtt~eaL---------~~gvP~vv~P~~--~DQ~~n-A~rve~~G~G-----~~l~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 307 HGGAGTTSEAL---------YAGVPLVVIPDG--ADQPLN-AERVEELGAG-----IALPFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred cCCcchHHHHH---------HcCCCEEEecCC--cchhHH-HHHHHHcCCc-----eecCcccCCHHHHHHHHHHHhcC
Confidence 89999998875 349999998643 454322 2233333321 12222 45777777777776544
No 40
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=74.40 E-value=6.2 Score=35.81 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc
Q 026977 32 DAAIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 32 ~~A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
..|.++.+.++..++ +||.+||. |...+++.|....+...+||+|..
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 356677777777666 45777777 999999999999998889999964
No 41
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=73.38 E-value=68 Score=28.65 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCC--cchHHHHHHHHHHHcCCCCccccCc
Q 026977 97 ADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG--YYNYLLTFIDKAVDDGFIKPSQRNI 174 (230)
Q Consensus 97 ~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G--~~~~l~~~l~~~~~~gfi~~~~~~~ 174 (230)
.++.+.-..++..||++|. ++|.+|+-|.. . .++|++.....+ ..+... ..+.+.+.| ...
T Consensus 240 ~g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea~---~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g~ 302 (357)
T PRK00726 240 VPFIDDMAAAYAAADLVIC-RAGASTVAELA---A------AGLPAILVPLPHAADDHQTA-NARALVDAG------AAL 302 (357)
T ss_pred eehHhhHHHHHHhCCEEEE-CCCHHHHHHHH---H------hCCCEEEecCCCCCcCcHHH-HHHHHHHCC------CEE
Confidence 3443344466789999885 55667766554 3 299999886421 111111 112333333 122
Q ss_pred EEEcCC--HHHHHHHHHhhcCC
Q 026977 175 IVSAPN--AKELVQKLEEYVPV 194 (230)
Q Consensus 175 i~~~~d--~ee~~~~l~~~~~~ 194 (230)
+.-.+| ++++.+.|.+....
T Consensus 303 ~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 303 LIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred EEEcccCCHHHHHHHHHHHHcC
Confidence 333445 99999999987654
No 42
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=72.38 E-value=10 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 32 DAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 32 ~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
.-|.-+.+.|+..|+.++++|.. --.+.+++.|.+....+|||.
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 55667888999999999999998 777899999999999999994
No 43
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=69.84 E-value=22 Score=28.66 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=37.3
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCC-----------------cchHHHHHHHHHHHcCCCCccc
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG-----------------YYNYLLTFIDKAVDDGFIKPSQ 171 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G-----------------~~~~l~~~l~~~~~~gfi~~~~ 171 (230)
..+++++.--+++--.+++++.. ..... |||++|.... -++-+...+ .+.|
T Consensus 54 ~t~~I~ly~E~~~d~~~f~~~~~--~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~---~~aG------ 121 (138)
T PF13607_consen 54 DTRVIVLYLEGIGDGRRFLEAAR--RAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAAL---RQAG------ 121 (138)
T ss_dssp S--EEEEEES--S-HHHHHHHHH--HHCCC-S-EEEEE---------------------HHHHHHHH---HHCT------
T ss_pred CCCEEEEEccCCCCHHHHHHHHH--HHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHH---HHcC------
Confidence 35678888888998899988874 33344 9999997531 122222222 2223
Q ss_pred cCcEEEcCCHHHHHHHHH
Q 026977 172 RNIIVSAPNAKELVQKLE 189 (230)
Q Consensus 172 ~~~i~~~~d~ee~~~~l~ 189 (230)
+..++|++|+++..+
T Consensus 122 ---v~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 122 ---VVRVDDLDELLDAAK 136 (138)
T ss_dssp ---EEEESSHHHHHHHHC
T ss_pred ---ceEECCHHHHHHHHH
Confidence 788999999998753
No 44
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=68.28 E-value=65 Score=28.81 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=57.5
Q ss_pred HHHHHCCC--eEEEcCCCcchHHH--HHHHHHh-cC--CeEEEEeCCccc--------ccccCCCC----CceEeecCCH
Q 026977 39 HELVARRL--DLVYGGGSIGLMGL--VSKAVHH-GG--GNVIGIIPRTLM--------NKEITGET----VGEVRPVADM 99 (230)
Q Consensus 39 ~~LA~~g~--~lVtGGg~~GlM~a--va~gA~~-~G--G~viGI~P~~~~--------~~e~~~~~----~~e~i~~~~m 99 (230)
-.+|+.|+ .||+||=+ |+-+- +.-.+.+ .| ..=+-|+|...- .-...|+- ++++...-..
T Consensus 66 ielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~ 144 (249)
T COG1010 66 IELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEV 144 (249)
T ss_pred HHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHH
Confidence 34555554 56888877 87543 3333343 44 234666775421 11111221 1112111122
Q ss_pred HHHHHHHHhhcCeEEEe--cCCcc---cHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 100 HQRKAEMARHSDCFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~l--PGG~G---TL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
-+++......+|.+|+| |=+-+ -+.+.++++ .+....+.||++....
T Consensus 145 IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil--~~~r~~~tpVgivrna 196 (249)
T COG1010 145 IEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEIL--REHRSPDTPVGIVRNA 196 (249)
T ss_pred HHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHH--HHhcCCCCcEEEEecC
Confidence 34555567889999998 66666 566666665 3333457899998643
No 45
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=67.97 E-value=96 Score=28.17 Aligned_cols=132 Identities=20% Similarity=0.207 Sum_probs=69.4
Q ss_pred HCCCeEEEcCCC--cchHHHHHHHHHhcC-CeEEEEeCCcccccccCCCCCceEeec--CCHH-HHHHHHHhhcCeEEEe
Q 026977 43 ARRLDLVYGGGS--IGLMGLVSKAVHHGG-GNVIGIIPRTLMNKEITGETVGEVRPV--ADMH-QRKAEMARHSDCFIAL 116 (230)
Q Consensus 43 ~~g~~lVtGGg~--~GlM~ava~gA~~~G-G~viGI~P~~~~~~e~~~~~~~e~i~~--~~m~-~Rk~~m~~~sDa~I~l 116 (230)
++|..+|-||+. .|-...++.+|...| |.|.=..|...... ......++++. .+.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~--~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASA--LKSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhh--HhhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 368888888874 466666677777776 45544455432110 11111233332 2222 2233667889977665
Q ss_pred cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 026977 117 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLE 189 (230)
Q Consensus 117 PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 189 (230)
| |.|.-+|..+++...--... +|+++ +-++.+ .+. ...... ....++++..+-|.-+.+.
T Consensus 109 p-GlG~~~~~~~~~~~~l~~~~-~p~Vi-DADaL~-----~la---~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 P-GLGRDAEGQEALKELLSSDL-KPLVL-DADALN-----LLA---ELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred C-CCCCCHHHHHHHHHHHhccC-CCEEE-eCcHHH-----HHH---hCcccc--cCCcEEECCCHHHHHHhcC
Confidence 4 57776666555432221112 89875 454432 111 111111 1122888999998887775
No 46
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=67.94 E-value=1e+02 Score=28.62 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=42.7
Q ss_pred cCeEEE-ecCCcccHHHHHHHHHHHHcC-CCCCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 026977 110 SDCFIA-LPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQ 186 (230)
Q Consensus 110 sDa~I~-lPGG~GTL~El~~~~t~~qlg-~~~kPivlln~~G-~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~ 186 (230)
.|++++ ++|++...+++.+.+.-..-. .++|||++- ..| ..+..... +.+.|+ -+.+++||+++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHH
Confidence 466654 567777777777776543322 168999554 334 33333322 323231 2678999999999
Q ss_pred HHHhh
Q 026977 187 KLEEY 191 (230)
Q Consensus 187 ~l~~~ 191 (230)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 98865
No 47
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=67.04 E-value=10 Score=31.09 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.5
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
+-++|+|+|-|..+..+.| .+.+.|-++||.++
T Consensus 15 ~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~Vi 47 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVI 47 (140)
T ss_pred hCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEE
Confidence 3578999998877665666 67888999999996
No 48
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=65.91 E-value=15 Score=33.74 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=17.9
Q ss_pred eEeecCCHHHHHHHHHhhcCeEEEecC
Q 026977 92 EVRPVADMHQRKAEMARHSDCFIALPG 118 (230)
Q Consensus 92 e~i~~~~m~~Rk~~m~~~sDa~I~lPG 118 (230)
|-++-+|+..-+-.-.-.||.+|+|-.
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTd 234 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTD 234 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEec
Confidence 566777885333333456999999976
No 49
>PRK00861 putative lipid kinase; Reviewed
Probab=65.64 E-value=13 Score=33.10 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
|.++.+..++.++ .||..||. |-...+..+.... +..+||+|..
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 3455555555654 56778887 9999999998765 4679999954
No 50
>PRK13337 putative lipid kinase; Reviewed
Probab=64.34 E-value=17 Score=32.58 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCC-eEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~GG-~viGI~P~~ 79 (230)
|.++.+.+++.++ .||..||. |-..++..+....+- ..+||+|..
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECCc
Confidence 3445555555554 56777777 999999999876643 479999954
No 51
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=63.96 E-value=12 Score=29.15 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHHHCCC--eEEEcCCCcchHHHHHHHHHhcCC---eEEEEeCCc
Q 026977 36 DLAHELVARRL--DLVYGGGSIGLMGLVSKAVHHGGG---NVIGIIPRT 79 (230)
Q Consensus 36 ~LG~~LA~~g~--~lVtGGg~~GlM~ava~gA~~~GG---~viGI~P~~ 79 (230)
++.+....... .||..||. |-...+..+....+. ..+||+|..
T Consensus 44 ~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 44 ALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 44443444444 77888887 999999998888765 479999854
No 52
>PRK13055 putative lipid kinase; Reviewed
Probab=62.59 E-value=17 Score=33.14 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC-CeEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~G-G~viGI~P~~ 79 (230)
|.++.+..++.++ .||-.||. |-+.+++.+....+ ...+||+|..
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECCC
Confidence 3445555555553 56667787 99999999988654 4569999954
No 53
>PRK09267 flavodoxin FldA; Validated
Probab=61.14 E-value=86 Score=25.27 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=16.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHH
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHEL 41 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~L 41 (230)
|++|.|+.+|..++.. +.|+.+++.|
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l 26 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKL 26 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHh
Confidence 4578888888887422 3455555555
No 54
>PRK13054 lipid kinase; Reviewed
Probab=60.73 E-value=21 Score=31.95 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC-C--eEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG-G--NVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~G-G--~viGI~P~~ 79 (230)
|.++.+.+++.++ .||..||. |-...++.+..... + ..+||+|..
T Consensus 45 a~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 45 AARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 3344444444554 56777787 99999998887642 2 469999954
No 55
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=60.71 E-value=1.6e+02 Score=28.17 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=82.6
Q ss_pred ccCcCCcceEEEEcCCCCC-CChHHHHHHHHHHHHHHH---CCCeEEEcCCC-cchHHHHHHHHHh--cCC----eEEEE
Q 026977 7 IQKNSRFKRVCVFCGSSTG-KRNCYSDAAIDLAHELVA---RRLDLVYGGGS-IGLMGLVSKAVHH--GGG----NVIGI 75 (230)
Q Consensus 7 ~~~~~~~~~V~VfggS~~~-~~~~~~~~A~~LG~~LA~---~g~~lVtGGg~-~GlM~ava~gA~~--~GG----~viGI 75 (230)
--..+|..++-|--..... .+..|- -||..+.+ .++.+++|... ...-..=+-+|.- .|+ ++.||
T Consensus 175 hl~EnR~~~~~v~v~~~~~~d~~~~~----~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~Gv 250 (400)
T PF04412_consen 175 HLDENRRATILVEVEAPPEEDDADWG----LLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGV 250 (400)
T ss_pred cCccCCCCeEEEEeCCCCCcCcchHH----HHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCC
Confidence 3456777888887765544 344554 45555544 48999999876 3444433333332 233 67899
Q ss_pred eCCcccccccCCCCCceEeec-CCHH-HHHHHH-H--hhcCeEEEecCCcccHHHHHHHHHHHHcCC--CCCcEEEEecC
Q 026977 76 IPRTLMNKEITGETVGEVRPV-ADMH-QRKAEM-A--RHSDCFIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLNVD 148 (230)
Q Consensus 76 ~P~~~~~~e~~~~~~~e~i~~-~~m~-~Rk~~m-~--~~sDa~I~lPGG~GTL~El~~~~t~~qlg~--~~kPivlln~~ 148 (230)
+|+.-...+........+.+. .++. .++.+- . +.-| +|+|+-=-=|++|+.++..+..-.. .++|+++.-..
T Consensus 251 TPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D-~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~ 329 (400)
T PF04412_consen 251 TPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGDEKVD-LVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSR 329 (400)
T ss_pred CCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCC-EEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCH
Confidence 997642221111112223332 2332 222220 1 1223 5556555678999999887766443 47899887554
Q ss_pred CcchHHHH--HHHHHHHcC
Q 026977 149 GYYNYLLT--FIDKAVDDG 165 (230)
Q Consensus 149 G~~~~l~~--~l~~~~~~g 165 (230)
..++.... +++.+.+.|
T Consensus 330 ~v~~~a~~~G~~~~le~~G 348 (400)
T PF04412_consen 330 AVYELAERMGYVERLEKAG 348 (400)
T ss_pred HHHHHHHhCCHHHHHHHcC
Confidence 44444433 334444433
No 56
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=60.63 E-value=21 Score=31.87 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCC---eEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGG---NVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~GG---~viGI~P~~ 79 (230)
|.++.+.+++.++ .||.-||. |-..++..|....+- ..+||+|..
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 3455555555554 56667777 999999999986532 358999954
No 57
>PRK14557 pyrH uridylate kinase; Provisional
Probab=59.96 E-value=1.1e+02 Score=27.06 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEE-EcCCCCCCCh---HHHHHHHHHHHHHH---HCC--CeEEEcCCC
Q 026977 15 RVCV-FCGSSTGKRN---CYSDAAIDLAHELV---ARR--LDLVYGGGS 54 (230)
Q Consensus 15 ~V~V-fggS~~~~~~---~~~~~A~~LG~~LA---~~g--~~lVtGGg~ 54 (230)
+|.+ |||+....+. .-.+..+++.+.|+ +.| ..||.|||+
T Consensus 6 riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 6 RVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred EEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 4444 7777764311 01124444555554 445 457888864
No 58
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.78 E-value=16 Score=33.25 Aligned_cols=94 Identities=26% Similarity=0.298 Sum_probs=56.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCc
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~ 91 (230)
++++|.++.-. + .+...+.+.++-++|.++|+.+..---. .... + ..
T Consensus 2 ~~kkv~lI~n~--~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~----------~~~~-----~------------~~--- 48 (305)
T PRK02645 2 QLKQVIIAYKA--G-SSQAKEAAERCAKQLEARGCKVLMGPSG----------PKDN-----P------------YP--- 48 (305)
T ss_pred CcCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecCc----------hhhc-----c------------cc---
Confidence 46678888532 2 3555577888888898888886542211 0000 0 00
Q ss_pred eEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC---CcchH
Q 026977 92 EVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD---GYYNY 153 (230)
Q Consensus 92 e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~---G~~~~ 153 (230)
.. .....+..|.+|++ ||=||+.+....+. ..++|++.+|.. ||...
T Consensus 49 ------~~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~ 98 (305)
T PRK02645 49 ------VF---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTH 98 (305)
T ss_pred ------ch---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecC
Confidence 00 01112346766666 99999998876653 358999999962 56554
No 59
>PRK11914 diacylglycerol kinase; Reviewed
Probab=59.49 E-value=1.3e+02 Score=26.82 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=18.9
Q ss_pred EEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 113 ~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
.|+.-||=||++|+...+. ..+.|+.++.
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgiiP 95 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGIIP 95 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEEe
Confidence 4556778888888876552 2356777764
No 60
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=59.47 E-value=29 Score=33.25 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCCcc---hHHHHHHHHHhcCC--eEEEEeCCcccccccCCCCCceEeecCCHHH
Q 026977 32 DAAIDLAHELVA-----RRLDLVYGGGSIG---LMGLVSKAVHHGGG--NVIGIIPRTLMNKEITGETVGEVRPVADMHQ 101 (230)
Q Consensus 32 ~~A~~LG~~LA~-----~g~~lVtGGg~~G---lM~ava~gA~~~GG--~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~ 101 (230)
+.|..+++.+|+ .+.-.+|||-..| ||.|+...+.+.+- +++.+....+.. ++...+.-..|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~------~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN------DFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH------HHHHHHHhhhHHH
Confidence 567778888887 4677888875544 89999999999876 555553322210 0001111133422
Q ss_pred HHHHHHhhcCeEEE-----ecCCcccHHHHHHHHHHHHcCCCCCcEEEE
Q 026977 102 RKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 145 (230)
Q Consensus 102 Rk~~m~~~sDa~I~-----lPGG~GTL~El~~~~t~~qlg~~~kPivll 145 (230)
=|.. . +.|++++ +.|.-.|-+|+|.+... +...+|-|++.
T Consensus 170 Fk~~-y-~~dlllIDDiq~l~gk~~~qeefFh~FN~--l~~~~kqIvlt 214 (408)
T COG0593 170 FKEK-Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNA--LLENGKQIVLT 214 (408)
T ss_pred HHHh-h-ccCeeeechHhHhcCChhHHHHHHHHHHH--HHhcCCEEEEE
Confidence 2222 2 7887776 67888999999988743 44445655554
No 61
>PRK08862 short chain dehydrogenase; Provisional
Probab=59.10 E-value=53 Score=27.89 Aligned_cols=54 Identities=7% Similarity=-0.011 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
+++.|.|+|+ ...+.+++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~--------GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS--------VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc--------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 3677777665 23556777778888887765554333334444444445554443
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=58.50 E-value=52 Score=27.65 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCeEEEecC--CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc
Q 026977 101 QRKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA 178 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPG--G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 178 (230)
+....++..||++|.-.. |+|+- +.|++. .++|++..+..+....+. + ......++-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~~~~~~~-------~-----~~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMV--LLEAMA------FGLPVISFDCPTGPSEII-------E-----DGVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHH--HHHHHH------cCCCEEEecCCCchHhhh-------c-----cCcceEEeCC
Confidence 334456778998765432 33332 556654 499999876543333221 1 1112333445
Q ss_pred CCHHHHHHHHHhhcCC
Q 026977 179 PNAKELVQKLEEYVPV 194 (230)
Q Consensus 179 ~d~ee~~~~l~~~~~~ 194 (230)
.|++++.+.|.+....
T Consensus 304 ~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 304 GDVEALAEALLRLMED 319 (348)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 6789999999987543
No 63
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=58.49 E-value=14 Score=31.78 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=26.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARR 45 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g 45 (230)
++++|+|||||=++...-+...|+++.+.|..--
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 3679999999998877788888888877775433
No 64
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=56.81 E-value=1.7e+02 Score=27.34 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=39.1
Q ss_pred HHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 026977 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKE 183 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 183 (230)
...+..||++|.-.| .-| .|+. . .++|++++...+.+-. ..+++.... +. ....+..-.+++.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---~------lg~P~Ilip~~~~q~n-a~~~~~~~~---l~--g~~~~l~~~~~~~ 353 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---G------LGKPVIQLPGKGPQFT-YGFAEAQSR---LL--GGSVFLASKNPEQ 353 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---H------hCCCEEEEeCCCCHHH-HHHHHhhHh---hc--CCEEecCCCCHHH
Confidence 345688998888766 344 4443 2 2899999874444321 122222110 00 0111222466788
Q ss_pred HHHHHHhhcC
Q 026977 184 LVQKLEEYVP 193 (230)
Q Consensus 184 ~~~~l~~~~~ 193 (230)
+.+.+.+...
T Consensus 354 l~~~l~~ll~ 363 (396)
T TIGR03492 354 AAQVVRQLLA 363 (396)
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 65
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=56.65 E-value=36 Score=28.80 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKEL 184 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 184 (230)
-+...||++|.-...-|.-.=+.|++. .++|++.-+..+. ..++ .+.....+.-.+|++++
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~~~i------------~~~~~g~~~~~~~~~~~ 319 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-REAV------------IDGVNGFLVPPGDAEAL 319 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-hhhh------------hcCcceEEECCCCHHHH
Confidence 456789987654322222223555654 4899998765432 2221 11122344455689999
Q ss_pred HHHHHhhcCC
Q 026977 185 VQKLEEYVPV 194 (230)
Q Consensus 185 ~~~l~~~~~~ 194 (230)
.+.+.+....
T Consensus 320 ~~~i~~l~~~ 329 (359)
T cd03808 320 ADAIERLIED 329 (359)
T ss_pred HHHHHHHHhC
Confidence 9999886433
No 66
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=56.56 E-value=49 Score=28.50 Aligned_cols=42 Identities=31% Similarity=0.435 Sum_probs=23.3
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCc
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 150 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~ 150 (230)
......|++++ .+|.|+-+.+..+.... ..++.|++ +|.++.
T Consensus 73 ~~~~~~d~v~i-g~gl~~~~~~~~i~~~~--~~~~~pvV-lDa~~~ 114 (254)
T cd01171 73 ELLERADAVVI-GPGLGRDEEAAEILEKA--LAKDKPLV-LDADAL 114 (254)
T ss_pred hhhccCCEEEE-ecCCCCCHHHHHHHHHH--HhcCCCEE-EEcHHH
Confidence 34466787766 44577754444433222 23478864 677653
No 67
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=55.98 E-value=1.1e+02 Score=27.47 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCC
Q 026977 34 AIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (230)
Q Consensus 34 A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~ 78 (230)
.+++++.||++|+.||-=+...=-++++++.-....|.-+=|+|-
T Consensus 19 G~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 19 GAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 446777778888888877777555666666555544444555543
No 68
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=55.89 E-value=15 Score=28.62 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=22.6
Q ss_pred EEEecCCcccHHHHHHHHHHHHcCC--CCCcEEEEe
Q 026977 113 FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLN 146 (230)
Q Consensus 113 ~I~lPGG~GTL~El~~~~t~~qlg~--~~kPivlln 146 (230)
+|+.-||=||+.|+...+- +... ...|+.++.
T Consensus 52 ~vvv~GGDGTi~~vvn~l~--~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD--KRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHH--hcccccCCCcEEEeC
Confidence 6778999999999987763 2221 116888874
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=54.77 E-value=68 Score=28.84 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCeEEEecC--CcccHHHHHHHHHHHHcCCCCCcEEEEe-cCCcchHHHHHHHHHHHcCCCCccccCcE
Q 026977 99 MHQRKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNYLLTFIDKAVDDGFIKPSQRNII 175 (230)
Q Consensus 99 m~~Rk~~m~~~sDa~I~lPG--G~GTL~El~~~~t~~qlg~~~kPivlln-~~G~~~~l~~~l~~~~~~gfi~~~~~~~i 175 (230)
..+....+...+|++|.-.- |+| -=+.|++. .++||+..+ ..| ..++ +. +.....+
T Consensus 247 ~~~~~~~~~~~~d~~v~~s~~Egf~--~~~lEAma------~G~Pvv~s~~~~g-~~ei-------v~-----~~~~G~l 305 (359)
T PRK09922 247 PWEVVQQKIKNVSALLLTSKFEGFP--MTLLEAMS------YGIPCISSDCMSG-PRDI-------IK-----PGLNGEL 305 (359)
T ss_pred cHHHHHHHHhcCcEEEECCcccCcC--hHHHHHHH------cCCCEEEeCCCCC-hHHH-------cc-----CCCceEE
Confidence 33444445667898885432 333 23555554 499999988 443 3322 22 2223345
Q ss_pred EEcCCHHHHHHHHHhhcCCC
Q 026977 176 VSAPNAKELVQKLEEYVPVH 195 (230)
Q Consensus 176 ~~~~d~ee~~~~l~~~~~~~ 195 (230)
+-.+|++++.+.|.+....+
T Consensus 306 v~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 306 YTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred ECCCCHHHHHHHHHHHHhCc
Confidence 55689999999999976554
No 70
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=54.67 E-value=75 Score=27.49 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHHHHHhhcCeEEEec----CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEE
Q 026977 101 QRKAEMARHSDCFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIV 176 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lP----GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~ 176 (230)
+....+...||++|... .|.|.- +.|++. +++||+.-+..+..+.+. . ......++
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~------~g~Pvi~~~~~~~~~~i~----~--------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIV--LLEAMA------FGKPVISTEIGTGGSYVN----L--------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchH--HHHHHH------cCCCEEecCCCCchhHHh----h--------CCCceEEe
Confidence 44556778899987642 455532 455554 399999877654433211 1 11223445
Q ss_pred EcCCHHHHHHHHHhhcCC
Q 026977 177 SAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 177 ~~~d~ee~~~~l~~~~~~ 194 (230)
-.+|++++.+.|.+....
T Consensus 315 ~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 315 PPGDPAALAEAIRRLLED 332 (357)
T ss_pred CCCCHHHHHHHHHHHHHC
Confidence 567899999999887543
No 71
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=53.90 E-value=64 Score=28.50 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCeEEEec-CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 101 QRKAEMARHSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lP-GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
+....+...||++|... -|+|.. +.|++. .++||+..+..| +..+ +.......+.-.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~-~~e~------------i~~~~~G~~~~~~ 311 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGG-ALET------------VIDGVTGILFEEQ 311 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCC-Ccce------------eeCCCCEEEeCCC
Confidence 34556778999888632 566665 366664 489999987654 2221 2222234444467
Q ss_pred CHHHHHHHHHhhcCC
Q 026977 180 NAKELVQKLEEYVPV 194 (230)
Q Consensus 180 d~ee~~~~l~~~~~~ 194 (230)
|++++.+.|..+...
T Consensus 312 ~~~~la~~i~~l~~~ 326 (351)
T cd03804 312 TVESLAAAVERFEKN 326 (351)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899988888877544
No 72
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.75 E-value=28 Score=31.13 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc
Q 026977 33 AAIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 33 ~A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
.+.++.+.+++.++ .||..||. |-..+++.+.... +..+||+|..
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~G 97 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeCC
Confidence 35556666666665 46777787 9999999887643 4569999954
No 73
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=53.45 E-value=36 Score=31.74 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=28.5
Q ss_pred CCc-EEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 026977 139 DKP-VGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEE 190 (230)
Q Consensus 139 ~kP-ivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 190 (230)
.+| +++++..-|+......+..+...--. ....+++.-++++++++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCCHHHHHHHHhc
Confidence 577 56667665666666666555432111 12456666777777766654
No 74
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=53.40 E-value=10 Score=39.82 Aligned_cols=46 Identities=35% Similarity=0.538 Sum_probs=35.0
Q ss_pred HHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhc-----------CCeEEEEeCCccccc
Q 026977 36 DLAHELVARRLDLVYGGGSIGLMGLVSKAVHHG-----------GGNVIGIIPRTLMNK 83 (230)
Q Consensus 36 ~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~-----------GG~viGI~P~~~~~~ 83 (230)
+|+|.|.-+-+.||.||| |.=+++.-|++.+ ||.+||-.-..++..
T Consensus 830 RLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~ 886 (1158)
T KOG2968|consen 830 RLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAE 886 (1158)
T ss_pred HHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhc
Confidence 588888889999999998 7788888887763 788887755555443
No 75
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=53.29 E-value=85 Score=28.07 Aligned_cols=40 Identities=30% Similarity=0.603 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcC
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLT-----FIDKAVDDG 165 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~-----~l~~~~~~g 165 (230)
|++.+++.+.-.+ ..++.|++++ +||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 4667777664433 3467898877 47776555 677776655
No 76
>PRK08105 flavodoxin; Provisional
Probab=52.93 E-value=27 Score=28.17 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|++|+|+.+|..++ -.+.|++|++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGn---te~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGN---ALLVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchH---HHHHHHHHHHHHHhCCCceE
Confidence 45789998899874 23578888888888887754
No 77
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=51.89 E-value=1.4e+02 Score=24.95 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=40.1
Q ss_pred HHHHHhhcCeEEEec---CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 103 KAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 103 k~~m~~~sDa~I~lP---GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
...++..||++|... |...++ +|++. .++|++..+..++ ..++ .......+.-.+
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~~---~Ea~~------~g~pvI~~~~~~~-~~~~------------~~~~~g~~~~~~ 326 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLVL---LEAMA------AGLPVVASDVGGI-PEVV------------EDGETGLLVPPG 326 (374)
T ss_pred HHHHHHhcCEEEecchhccccchH---HHHHH------cCCcEEEeCCCCh-hHHh------------cCCcceEEeCCC
Confidence 344567799877643 233344 44553 3899998876433 2211 112233445555
Q ss_pred CHHHHHHHHHhhcC
Q 026977 180 NAKELVQKLEEYVP 193 (230)
Q Consensus 180 d~ee~~~~l~~~~~ 193 (230)
|++++.+.|.+...
T Consensus 327 ~~~~l~~~i~~~~~ 340 (374)
T cd03801 327 DPEALAEAILRLLD 340 (374)
T ss_pred CHHHHHHHHHHHHc
Confidence 68999999988643
No 78
>PRK09004 FMN-binding protein MioC; Provisional
Probab=51.63 E-value=25 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|++|.|+.+|..++. .+.|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGna---e~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGA---EYVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHHcCCceE
Confidence 457899999998742 3568888888877777653
No 79
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=50.86 E-value=1.6e+02 Score=25.13 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHhhcCeEEEecC-----CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEE
Q 026977 102 RKAEMARHSDCFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIV 176 (230)
Q Consensus 102 Rk~~m~~~sDa~I~lPG-----G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~ 176 (230)
....++..||++|.... |.+.-.=+.|++. .++|++..+..+.-+. + .+ .....++
T Consensus 287 ~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~~~-~-------~~-----~~~g~~~ 347 (394)
T cd03794 287 ELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESAEL-V-------EE-----AGAGLVV 347 (394)
T ss_pred HHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCchhh-h-------cc-----CCcceEe
Confidence 34456788998886532 2333334566664 4999999876543221 1 11 1223344
Q ss_pred EcCCHHHHHHHHHhhc
Q 026977 177 SAPNAKELVQKLEEYV 192 (230)
Q Consensus 177 ~~~d~ee~~~~l~~~~ 192 (230)
-.+|++++.+.|.+..
T Consensus 348 ~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 348 PPGDPEALAAAILELL 363 (394)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4568999999998876
No 80
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=50.17 E-value=1.7e+02 Score=25.30 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=19.9
Q ss_pred CeEEEcCCCcchHHH-HHHHHHhcCCeEEEEe
Q 026977 46 LDLVYGGGSIGLMGL-VSKAVHHGGGNVIGII 76 (230)
Q Consensus 46 ~~lVtGGg~~GlM~a-va~gA~~~GG~viGI~ 76 (230)
.+.+|..+. |-||. +++.+.+.|-.|+.+.
T Consensus 17 VR~itN~SS-G~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 17 VRGITNHST-GQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred ceeecCccc-hHHHHHHHHHHHhCCCEEEEEE
Confidence 456777776 77754 4556667777787774
No 81
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=49.86 E-value=77 Score=27.51 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=42.6
Q ss_pred HHHHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 102 RKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 102 Rk~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
....+...||++|.-. .|+|. =+.|++. .++|++..+..++ ..+ +.......+.-.+
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~-~e~------------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGI-PDI------------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCC-hhh------------eeCCCceEEeCCC
Confidence 4455778999877643 23332 2455554 4999998876543 221 1111223344456
Q ss_pred CHHHHHHHHHhhcCC
Q 026977 180 NAKELVQKLEEYVPV 194 (230)
Q Consensus 180 d~ee~~~~l~~~~~~ 194 (230)
|++++.+.+.+....
T Consensus 316 ~~~~~~~~l~~l~~~ 330 (365)
T cd03825 316 DPEDLAEGIEWLLAD 330 (365)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999988886543
No 82
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=49.79 E-value=40 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=29.5
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
+++|+|.+|......+.-...++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 34688887766555666778999999999999998654
No 83
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=49.49 E-value=29 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=24.4
Q ss_pred HHhhcCe--EEEecCCcccHHHHHHHHHHHHcCCC-CCcEEEEe
Q 026977 106 MARHSDC--FIALPGGYGTLEELLEVITWAQLGIH-DKPVGLLN 146 (230)
Q Consensus 106 m~~~sDa--~I~lPGG~GTL~El~~~~t~~qlg~~-~kPivlln 146 (230)
+....+. .|+.-||=||+.|+...+-- .... ..|+.++.
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~~--~~~~~~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLMG--SDREDKPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHCT--STSSS--EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHhh--cCCCccceEEEec
Confidence 3344543 88888999999999877621 1111 23787774
No 84
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=49.18 E-value=71 Score=27.63 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCeEEEecCC------cccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCc
Q 026977 101 QRKAEMARHSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNI 174 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPGG------~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~ 174 (230)
+....+...||++|...-. -|.-.=++|++. .++|++..+..+. ..++ . +.....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~-~~~i-------~-----~~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGI-PELV-------E-----DGETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCc-chhh-------h-----CCCceE
Confidence 3455567889987764221 222233666664 4999998766443 2221 1 112233
Q ss_pred EEEcCCHHHHHHHHHhhcCC
Q 026977 175 IVSAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 175 i~~~~d~ee~~~~l~~~~~~ 194 (230)
+.-.+|++++.+.|.++...
T Consensus 308 ~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPPGDPEALADAIERLLDD 327 (355)
T ss_pred EeCCCCHHHHHHHHHHHHhC
Confidence 33345999999999887544
No 85
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=48.81 E-value=35 Score=33.15 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcC------CeEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGG------GNVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~G------G~viGI~P~~ 79 (230)
|+++.+.++..++ .||.-||. |....+..|..... ...+||||..
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecCc
Confidence 4455666655565 56777887 99999999987642 3569999954
No 86
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=48.46 E-value=37 Score=30.55 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=32.1
Q ss_pred cCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 026977 10 NSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGG 53 (230)
Q Consensus 10 ~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg 53 (230)
..+++-|++++|..... .+.+...++++.|-++++-+++-|+
T Consensus 91 ~G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC 132 (258)
T cd00587 91 DGTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC 132 (258)
T ss_pred cCCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch
Confidence 45677888888777542 4556677899999999999988876
No 87
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=47.96 E-value=83 Score=27.04 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCeEEEec-----CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcE
Q 026977 101 QRKAEMARHSDCFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNII 175 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lP-----GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i 175 (230)
+....++..||++|.-. |-.+++- |++. .++||+..+..+ .+. +.......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~---Ea~a------~G~PvI~~~~~~-~~~-------------i~~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLA---YAIG------FGKPVISTPVGH-AEE-------------VLDGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHH---HHHH------cCCCEEecCCCC-hhe-------------eeeCCCcEE
Confidence 34455678899887532 2233444 4444 389999877654 222 112223344
Q ss_pred EEcCCHHHHHHHHHhhcCC
Q 026977 176 VSAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 176 ~~~~d~ee~~~~l~~~~~~ 194 (230)
+-.+|++++.+.|.+....
T Consensus 316 ~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 316 VPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred EcCCCHHHHHHHHHHHHcC
Confidence 5557899999999887543
No 88
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=47.83 E-value=74 Score=24.86 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCeEEEecC--CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 100 HQRKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPG--G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
.+....+...||++|...- |+|+ =+.|++. .++|+++-+.. .+.. .+.+ .....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e-------~~~~-----~~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNE-------IIND-----GVNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHH-------HSGT-----TTSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCce-------eecc-----ccceEEeC
Confidence 4455667788998888643 3333 3444554 38999987743 3332 2222 22345555
Q ss_pred cCCHHHHHHHHHhhcCC
Q 026977 178 APNAKELVQKLEEYVPV 194 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~ 194 (230)
..|++++.+.|.+....
T Consensus 142 ~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 142 PNDIEELADAIEKLLND 158 (172)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC
Confidence 66889999999887543
No 89
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=47.58 E-value=80 Score=28.57 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCeEEEe--cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc
Q 026977 101 QRKAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA 178 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~l--PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 178 (230)
+....++..||++|.- ..|+|.. +.|++. .++||+..+..| ...+ +.++ ....+.-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG-LPVA-------VADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC-cHhh-------hccC-----CceEECCC
Confidence 4455678899988863 3566643 556664 389999887643 2221 1111 11222223
Q ss_pred CCHHHHHHHHHhhcC
Q 026977 179 PNAKELVQKLEEYVP 193 (230)
Q Consensus 179 ~d~ee~~~~l~~~~~ 193 (230)
+|++++.+.|.++..
T Consensus 353 ~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 353 HDPADWADALARLLD 367 (405)
T ss_pred CCHHHHHHHHHHHHh
Confidence 589999888887654
No 90
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=47.56 E-value=46 Score=30.74 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred HhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 026977 107 ARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNYLLTFIDK 160 (230)
Q Consensus 107 ~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~-----~G~~~~l~~~l~~ 160 (230)
.+..|+|||+=| .-||+|-..++.++-- ..||||+-+. .-..|...+++..
T Consensus 75 ~~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 75 YDDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred HhcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 345899999875 8999999998876432 3899999763 2245555665543
No 91
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=47.32 E-value=92 Score=24.36 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=4.6
Q ss_pred CeEEEecCCcc
Q 026977 111 DCFIALPGGYG 121 (230)
Q Consensus 111 Da~I~lPGG~G 121 (230)
|++|||+||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 34444444443
No 92
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=47.29 E-value=23 Score=27.50 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|+|+|.+|......+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 567777766655566777899999999998999987
No 93
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=47.21 E-value=67 Score=25.15 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCCC---cchHHHHHHHHHhcCCe
Q 026977 31 SDAAIDLAHELVA----RRL-DLVYGGGS---IGLMGLVSKAVHHGGGN 71 (230)
Q Consensus 31 ~~~A~~LG~~LA~----~g~-~lVtGGg~---~GlM~ava~gA~~~GG~ 71 (230)
.+.|+.+|+.||+ .|+ .++++=++ .|-+.|+++++.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 4788888888887 576 55664332 58999999999998853
No 94
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=47.20 E-value=31 Score=30.50 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=26.7
Q ss_pred cCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 026977 8 QKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELV 42 (230)
Q Consensus 8 ~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA 42 (230)
.|....++|||||||=++..--+...|+++-+.+.
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ 50 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLD 50 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcC
Confidence 35566678999999998877777777777777664
No 95
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=47.14 E-value=1.4e+02 Score=26.70 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=35.6
Q ss_pred CHHHHHHHHHh-----hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHc
Q 026977 98 DMHQRKAEMAR-----HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDD 164 (230)
Q Consensus 98 ~m~~Rk~~m~~-----~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~ 164 (230)
+=.+|-+-+.+ ..||++..-||.|+.. +..-+.|..+..++|+ +++ |+++-.++-.+...
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r-lL~~ld~~~~~~~pK~--~iG----ySDiTaL~~~l~~~ 110 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGANR-LLPYLDYDLIRANPKI--FVG----YSDITALHLALYAK 110 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH-hhhhCCHHHHhhCCeE--EEE----ecHHHHHHHHHHHh
Confidence 33455554443 3689999999999965 5555667666544454 443 34444444334333
No 96
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=46.97 E-value=1.1e+02 Score=26.26 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=42.6
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEee--cCCHHHHHHHHHh---------hcCe
Q 026977 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRP--VADMHQRKAEMAR---------HSDC 112 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~--~~~m~~Rk~~m~~---------~sDa 112 (230)
.|-.+||||- |..+.++-.+.++++.-++-+ .+..+|.+.. .+++ ..++-+..+...+ .-|+
T Consensus 3 agrVivYGGk--GALGSacv~~FkannywV~si--Dl~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGGK--GALGSACVEFFKANNYWVLSI--DLSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcCc--chHhHHHHHHHHhcCeEEEEE--eecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 4678999874 888888888888888766653 2222332221 2222 3455544444333 3599
Q ss_pred EEEecCCc
Q 026977 113 FIALPGGY 120 (230)
Q Consensus 113 ~I~lPGG~ 120 (230)
++.+.||.
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99987765
No 97
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=46.78 E-value=1.1e+02 Score=28.13 Aligned_cols=83 Identities=25% Similarity=0.287 Sum_probs=41.1
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-eEEEEeCCcccccccCCC-CCceEeecC---CHHHHHHHHHh--hcCeEEEec
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITGE-TVGEVRPVA---DMHQRKAEMAR--HSDCFIALP 117 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI~P~~~~~~e~~~~-~~~e~i~~~---~m~~Rk~~m~~--~sDa~I~lP 117 (230)
+..+|.|.|+.|||- ...|...|. ++|.+ .....+.+.+.. .-.+.+... +-..+...+.. -+|.+|-.-
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 368899999999998 444555664 44554 111111222222 112222221 12222222222 278888888
Q ss_pred CCcccHHHHHHHH
Q 026977 118 GGYGTLEELLEVI 130 (230)
Q Consensus 118 GG~GTL~El~~~~ 130 (230)
|-.-|++....+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 8555555554443
No 98
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=46.60 E-value=49 Score=28.87 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cchHHHHHHHHHhcCC
Q 026977 31 SDAAIDLAHELVA----RRLDLV-Y--GGGS-IGLMGLVSKAVHHGGG 70 (230)
Q Consensus 31 ~~~A~~LG~~LA~----~g~~lV-t--GGg~-~GlM~ava~gA~~~GG 70 (230)
.+.|..+|+.||+ .|+.=| + ||.. .|-+.|.|++|.++|-
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 4789999999987 465433 2 3432 5999999999999873
No 99
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=46.09 E-value=96 Score=28.76 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=40.4
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELV 185 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~ 185 (230)
++-.||.+| ||.||+. .|+..+ +.|.+=+.. |.+..+.+ .+.+.| +++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~L------GtPaIs~~~-g~~~~vd~---~L~~~G--------ll~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAALL------GTPAISCFP-GKLLAVDK---YLIEKG--------LLYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHHh------CCCEEEecC-CcchhHHH---HHHHCC--------CeEecCCHHHHH
Confidence 456677665 6667876 444433 889886543 23333333 344545 478899999999
Q ss_pred HHHHhhc
Q 026977 186 QKLEEYV 192 (230)
Q Consensus 186 ~~l~~~~ 192 (230)
+.+.+..
T Consensus 302 ~~v~~~~ 308 (335)
T PF04007_consen 302 EYVRKNL 308 (335)
T ss_pred HHHHHhh
Confidence 9887643
No 100
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=45.65 E-value=87 Score=27.61 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=22.9
Q ss_pred HHhhcCeEEEecCCcccHHH--HHHHHHHHH-cCCCCCcEEEEecCCc
Q 026977 106 MARHSDCFIALPGGYGTLEE--LLEVITWAQ-LGIHDKPVGLLNVDGY 150 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~E--l~~~~t~~q-lg~~~kPivlln~~G~ 150 (230)
+...+|++++ +.||+.+ +-.+....+ ...+++|+ ++++.+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pv-VlDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPV-VLDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCE-EECCccc
Confidence 4578899999 4444443 322222222 23458896 4677654
No 101
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=45.26 E-value=76 Score=28.90 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=44.1
Q ss_pred HHHHHHhhcCeEEEe--cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 102 RKAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 102 Rk~~m~~~sDa~I~l--PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
....+...||++|.. |.+.|. =+.|++. .++||+.-+..|. ..+ +.+.....+.-.+
T Consensus 293 ~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~-~e~------------i~~~~~G~lv~~~ 351 (396)
T cd03818 293 QYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV-REV------------ITDGENGLLVDFF 351 (396)
T ss_pred HHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc-hhh------------cccCCceEEcCCC
Confidence 334466889998874 445442 2566664 4999998776432 221 2222233444457
Q ss_pred CHHHHHHHHHhhcCC
Q 026977 180 NAKELVQKLEEYVPV 194 (230)
Q Consensus 180 d~ee~~~~l~~~~~~ 194 (230)
|++++.+.|.+....
T Consensus 352 d~~~la~~i~~ll~~ 366 (396)
T cd03818 352 DPDALAAAVIELLDD 366 (396)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999887544
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=44.51 E-value=77 Score=26.67 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe---EEEcCCCcchHHHHHHHHHhcCCeEE-EEeCCcccccccCCC
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD---LVYGGGSIGLMGLVSKAVHHGGGNVI-GIIPRTLMNKEITGE 88 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~---lVtGGg~~GlM~ava~gA~~~GG~vi-GI~P~~~~~~e~~~~ 88 (230)
++.+-|-+|+..-.+=.-.-.+.+.=+.|-++|++ |=.|=|..+.-.-...+. ..+|..| |+ .+
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y---~f-------- 70 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGY---DF-------- 70 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc-ccCCeEEEEE---ec--------
Confidence 45666767765421112223355666777787765 345555323333332222 4444332 22 00
Q ss_pred CCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEE-ecCCcchHHHHHHHHHHHcCCC
Q 026977 89 TVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYNYLLTFIDKAVDDGFI 167 (230)
Q Consensus 89 ~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivll-n~~G~~~~l~~~l~~~~~~gfi 167 (230)
.++|. . -++.|| +|+=-+|.||--|.. . .+||.+++ |-+=+=++=.++.+.+.++|++
T Consensus 71 -------~psl~---e-~I~~Ad-lVIsHAGaGS~letL---~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 71 -------SPSLT---E-DIRSAD-LVISHAGAGSCLETL---R------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred -------CccHH---H-HHhhcc-EEEecCCcchHHHHH---H------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 11221 1 234567 455568899966553 2 38998776 4332223444545677787764
No 103
>PRK12361 hypothetical protein; Provisional
Probab=44.50 E-value=44 Score=32.67 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc
Q 026977 34 AIDLAHELVARRL-DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 34 A~~LG~~LA~~g~-~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
|.++.+..++.|. .||..||. |--..+..+.... +..+||+|..
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~G 330 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecCC
Confidence 4555655555554 56677787 9999998888754 4679999954
No 104
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=44.50 E-value=57 Score=29.91 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=34.0
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNYLLTFIDK 160 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~-----~G~~~~l~~~l~~ 160 (230)
..|+|||.=| .-||+|...++.+.- . ..||||+-+. .-..|...++...
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~-~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-E-NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-c-CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 4789888865 899999999987643 2 3899999753 1244555555443
No 105
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=44.06 E-value=47 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHH----CCCeE-EE--cCCC-cchHHHHHHHHHhcCC
Q 026977 31 SDAAIDLAHELVA----RRLDL-VY--GGGS-IGLMGLVSKAVHHGGG 70 (230)
Q Consensus 31 ~~~A~~LG~~LA~----~g~~l-Vt--GGg~-~GlM~ava~gA~~~GG 70 (230)
.+.|..+|+.||+ .|+.- ++ ||.. .|-+.|+++++.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 6788899999887 35433 22 3322 5899999999999873
No 106
>PRK13057 putative lipid kinase; Reviewed
Probab=43.38 E-value=50 Score=29.22 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc
Q 026977 33 AAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 33 ~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
.|.++.+.+.+.--.||..||. |-...++.+.... +..+||+|..
T Consensus 39 ~a~~~~~~~~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~G 83 (287)
T PRK13057 39 DLSEVIEAYADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPLG 83 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECCC
Confidence 3445555533332356777777 9999999998764 4679999954
No 107
>PRK12359 flavodoxin FldB; Provisional
Probab=43.23 E-value=62 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCeEEEEeCCc
Q 026977 59 GLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 59 ~ava~gA~~~GG~viGI~P~~ 79 (230)
+...+-..+.|+.++|-.|..
T Consensus 102 ~~l~~~l~~~Ga~ivG~~~~~ 122 (172)
T PRK12359 102 GMLHDKLAPKGVKFVGYWPTE 122 (172)
T ss_pred HHHHHHHHhCCCeEEeeEeCC
Confidence 344444444566666665543
No 108
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=42.62 E-value=1.2e+02 Score=27.82 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHhhcCeEEEe---cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEE-E
Q 026977 102 RKAEMARHSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIV-S 177 (230)
Q Consensus 102 Rk~~m~~~sDa~I~l---PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~-~ 177 (230)
....+...||++|.- ..|+|.. +.|++. .++||+.-+..|. ..+ +. ......+. -
T Consensus 269 ~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~Ei-------v~-----~~~~G~~l~~ 327 (380)
T PRK15484 269 KMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-TEF-------VL-----EGITGYHLAE 327 (380)
T ss_pred HHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-Hhh-------cc-----cCCceEEEeC
Confidence 345567899998863 2455543 456664 4999999876542 222 11 11222222 2
Q ss_pred cCCHHHHHHHHHhhcCC
Q 026977 178 APNAKELVQKLEEYVPV 194 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~ 194 (230)
..|++++.+.|.+....
T Consensus 328 ~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 328 PMTSDSIISDINRTLAD 344 (380)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 46899999999887644
No 109
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=42.53 E-value=2.6e+02 Score=25.26 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=32.1
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHc-CCCC
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDD-GFIK 168 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~-gfi~ 168 (230)
.||++..-||.|+.. +..-+.+..+..++|++ + | |+++-.+.-.+... |+++
T Consensus 67 i~aI~~~rGG~g~~r-lL~~lD~~~i~~~PK~f--i---G-ySDiTaL~~al~~~~g~~t 119 (308)
T cd07062 67 IKAIIPTIGGDDSNE-LLPYLDYELIKKNPKIF--I---G-YSDITALHLAIYKKTGLVT 119 (308)
T ss_pred CCEEEECCcccCHhh-hhhhcCHHHHhhCCCEE--E---e-ccHHHHHHHHHHHhcCCeE
Confidence 589999999999964 65566666666556654 4 3 34444444334333 5544
No 110
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.37 E-value=1.1e+02 Score=24.36 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 29 CYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 29 ~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
.|-.-+.-+...|...||.+++-|.. =-.+.+++.|.+.+..++|+
T Consensus 14 ~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 14 GHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred ccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34344455566778899999999987 66778889999999999999
No 111
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=42.32 E-value=34 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=22.1
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
..||+||+. |+=.++++...+.|+.++.++
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 457888887 888888888888877554443
No 112
>PHA00099 minor capsid protein
Probab=42.30 E-value=8 Score=31.35 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=34.1
Q ss_pred EEcCCHHHHHHHHHhhcCCCccccccCchhhhhhhhhceeeeecccchhhhh
Q 026977 176 VSAPNAKELVQKLEEYVPVHDGVIAKASWEVDKQQAQQQVGFKATTLQTEVA 227 (230)
Q Consensus 176 ~~~~d~ee~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (230)
.|.+||+|++++|..-.+......-++-..-+.++|+|. -|++++-|.+-+
T Consensus 87 ~F~NdP~eml~~L~dp~NydEa~~LGl~~~~~p~~apq~-~~~~~~~~~~~v 137 (147)
T PHA00099 87 RFGNDPEEMLDFLSDPENYDEAKALGLVYEDGPSGAPQT-FFEAQPKDDQNV 137 (147)
T ss_pred HhCCCHHHHHHHHcChhhHHHHHhcceeeecCcccccch-hhhcCCCCcccc
Confidence 568899999999987544433333455556677777654 577777665543
No 113
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=42.19 E-value=69 Score=27.17 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=39.0
Q ss_pred HHHhhcCeEEEec---CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 105 EMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 105 ~m~~~sDa~I~lP---GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
.+...||++|.-. |...+ +.|++. .++|++.-+..+. ..++ ++ ...+.-.+|+
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~---~~Ea~a------~g~PvI~~~~~~~-~e~~---~~-----------~g~~~~~~~~ 319 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNV---LLEAMA------CGLPVVATDVGDN-AELV---GD-----------TGFLVPPGDP 319 (365)
T ss_pred HHHHhCCEEEeCCccccCCcH---HHHHHh------cCCCEEEcCCCCh-HHHh---hc-----------CCEEeCCCCH
Confidence 4568899776532 22234 445554 3899998765432 2221 11 2334556789
Q ss_pred HHHHHHHHhhcCC
Q 026977 182 KELVQKLEEYVPV 194 (230)
Q Consensus 182 ee~~~~l~~~~~~ 194 (230)
+++.+.+.+....
T Consensus 320 ~~l~~~i~~l~~~ 332 (365)
T cd03807 320 EALAEAIEALLAD 332 (365)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999886543
No 114
>PRK05723 flavodoxin; Provisional
Probab=42.14 E-value=43 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
++|+|+.+|..++. .+.|++|.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~a---e~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTA---EEVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHH---HHHHHHHHHHHHHCCCcee
Confidence 47889988998843 3568888888888888763
No 115
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=42.10 E-value=27 Score=30.56 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=28.5
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNY 153 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~ 153 (230)
-+++.||++|.+.+.+| +|++ .++|||++++.. ||+.
T Consensus 195 ~Ll~~s~~VvtinStvG-----lEAl------l~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVG-----LEAL------LHGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHhCCEEEEECCHHH-----HHHH------HcCCceEEecCc-ccCC
Confidence 56799999999998877 3444 359999999754 6663
No 116
>PRK07775 short chain dehydrogenase; Provisional
Probab=42.04 E-value=1.6e+02 Score=25.29 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=33.6
Q ss_pred cCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 8 QKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 8 ~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
++....++|.|.|+++ -....+.+.|+++|+.++.-.....-...+.....+.++.+..+
T Consensus 5 ~~~~~~~~vlVtGa~g--------~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 64 (274)
T PRK07775 5 EPHPDRRPALVAGASS--------GIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAF 64 (274)
T ss_pred CCCCCCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Confidence 3444456899998765 23456777888899988654443232222222233335554443
No 117
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=41.45 E-value=2e+02 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
++|.|.|+++ -....+.+.|+++|+.++.=+
T Consensus 6 ~~ilItGasg--------~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 6 KTALVTGASR--------GIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CEEEEECCCc--------HHHHHHHHHHHHCCCEEEEEe
Confidence 3688888654 234567777778888864333
No 118
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=41.38 E-value=1.5e+02 Score=26.73 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=37.6
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCCcchHHHH
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRL------------------------------DLVYGGGSIGLMGLV 61 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~------------------------------~lVtGGg~~GlM~av 61 (230)
++++|+|+.-.. .+...+.+.++.++|.++|+ .+|+-||. |-|--+
T Consensus 4 ~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 79 (291)
T PRK02155 4 QFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLGI 79 (291)
T ss_pred cCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHHH
Confidence 366799985322 24444566666666654433 34556777 777777
Q ss_pred HHHHHhcCCeEEEE
Q 026977 62 SKAVHHGGGNVIGI 75 (230)
Q Consensus 62 a~gA~~~GG~viGI 75 (230)
++.....+-.++||
T Consensus 80 ~~~~~~~~~pilGI 93 (291)
T PRK02155 80 GRQLAPYGVPLIGI 93 (291)
T ss_pred HHHhcCCCCCEEEE
Confidence 77666666677887
No 119
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=41.36 E-value=1.1e+02 Score=26.58 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 104 ~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
..+...||++|.-. .|+| .=++|++.. ++|||.-+..|. ..++ ++ ....+...+++
T Consensus 261 ~~~~~~adi~v~ps~~E~~~--~~~lEAma~------G~PvI~s~~~~~-~~~i---~~----------~~~~~~~~~~~ 318 (358)
T cd03812 261 PELLQAMDVFLFPSLYEGLP--LVLIEAQAS------GLPCILSDTITK-EVDL---TD----------LVKFLSLDESP 318 (358)
T ss_pred HHHHHhcCEEEecccccCCC--HHHHHHHHh------CCCEEEEcCCch-hhhh---cc----------CccEEeCCCCH
Confidence 34678899887532 2333 225666654 999998876542 2211 11 12344455678
Q ss_pred HHHHHHHHhhcCCC
Q 026977 182 KELVQKLEEYVPVH 195 (230)
Q Consensus 182 ee~~~~l~~~~~~~ 195 (230)
+++.+.|.+....+
T Consensus 319 ~~~a~~i~~l~~~~ 332 (358)
T cd03812 319 EIWAEEILKLKSED 332 (358)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999998876553
No 120
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=41.18 E-value=46 Score=23.94 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=23.8
Q ss_pred ccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 7 IQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 7 ~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
..|.+..+.+.|++ .... ++...=.++++.|+++|+.++.
T Consensus 9 w~p~~~~k~~v~i~-HG~~---eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 9 WKPENPPKAVVVIV-HGFG---EHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred ecCCCCCCEEEEEe-CCcH---HHHHHHHHHHHHHHhCCCEEEE
Confidence 35666534444444 2222 3333445788899999999984
No 121
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=41.11 E-value=2.7e+02 Score=25.02 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=41.6
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCe-EEEEeCCcccccccC-CCCCceEeec--CCHHHHHHHHHh--hcCeEEEec
Q 026977 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGN-VIGIIPRTLMNKEIT-GETVGEVRPV--ADMHQRKAEMAR--HSDCFIALP 117 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~ava~gA~~~GG~-viGI~P~~~~~~e~~-~~~~~e~i~~--~~m~~Rk~~m~~--~sDa~I~lP 117 (230)
....+|+|+|+.|++ +..-|+..|.. |+.+..... ..+.. .-..+.++.. .+..++-..... ..|.+|=.-
T Consensus 177 g~~VlV~G~g~vG~~--a~~~ak~~G~~~Vi~~~~~~~-~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 177 GDSVAVIGCGGVGDA--AIAGAALAGASKIIAVDIDDR-KLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCEEEEECCCHHHHH--HHHHHHHcCCCeEEEEcCCHH-HHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 356778887655554 45556777764 777743221 11110 0111222222 233332222221 257777777
Q ss_pred CCcccHHHHHHHH
Q 026977 118 GGYGTLEELLEVI 130 (230)
Q Consensus 118 GG~GTL~El~~~~ 130 (230)
|+.-|+++.+..+
T Consensus 254 g~~~~~~~~~~~~ 266 (358)
T TIGR03451 254 GRPETYKQAFYAR 266 (358)
T ss_pred CCHHHHHHHHHHh
Confidence 7766777765443
No 122
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=41.04 E-value=1.7e+02 Score=22.64 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCc---chHHHHHHHHHhcCCeEEEEeCCcccccccCCCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSI---GLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETV 90 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~---GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~ 90 (230)
|+|.|+|+++ ...+++.+.|+++|...|..-+.. .--..........+..+.-+-.+.. ..
T Consensus 1 k~~lItGa~~--------giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~-~~------- 64 (167)
T PF00106_consen 1 KTVLITGASS--------GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLS-DP------- 64 (167)
T ss_dssp EEEEEETTTS--------HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETT-SH-------
T ss_pred CEEEEECCCC--------HHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccc-cc-------
Confidence 4688888776 456678888888855444444431 2222233333334544444421111 00
Q ss_pred ceEeecCCHHHHHHHHHhhcCeEEEecCCcc-------cHHHHHHHHHH
Q 026977 91 GEVRPVADMHQRKAEMARHSDCFIALPGGYG-------TLEELLEVITW 132 (230)
Q Consensus 91 ~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~G-------TL~El~~~~t~ 132 (230)
-....+.++-..-...-|.+|...|... +.+++-..+..
T Consensus 65 ---~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~ 110 (167)
T PF00106_consen 65 ---ESIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRV 110 (167)
T ss_dssp ---HHHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHH
T ss_pred ---ccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence 0011222222223346799999999887 56777766654
No 123
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.01 E-value=1.5e+02 Score=26.77 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=42.3
Q ss_pred ccccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe---------------------------EEEcCCCc
Q 026977 3 MEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD---------------------------LVYGGGSI 55 (230)
Q Consensus 3 ~~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~---------------------------lVtGGg~~ 55 (230)
|..||.-.. +++|+|+.- .. +...+.+.++.++|.++|+. +|+=||.
T Consensus 1 ~~~~~~~~~-~~~i~ii~~--~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD- 74 (287)
T PRK14077 1 MQNKIDHKN-IKKIGLVTR--PN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGD- 74 (287)
T ss_pred Ccccccccc-CCEEEEEeC--Cc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCC-
Confidence 455665443 678999953 32 25567788888888665522 2334555
Q ss_pred chHHHHHHHHHhcCCeEEEE
Q 026977 56 GLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 56 GlM~ava~gA~~~GG~viGI 75 (230)
|-|=-+++-+...+-.++||
T Consensus 75 GT~L~aa~~~~~~~~PilGI 94 (287)
T PRK14077 75 GTLISLCRKAAEYDKFVLGI 94 (287)
T ss_pred HHHHHHHHHhcCCCCcEEEE
Confidence 77666666565566678887
No 124
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.97 E-value=1.7e+02 Score=26.67 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-----------------------------------EEcCCCcc
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL-----------------------------------VYGGGSIG 56 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l-----------------------------------VtGGg~~G 56 (230)
.+++|+|+.-.. .+...+.+.++.++|.++|+.+ |+=||. |
T Consensus 4 ~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD-G 79 (296)
T PRK04539 4 PFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD-G 79 (296)
T ss_pred CCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc-H
Confidence 367899995322 4666678888888887666433 333455 7
Q ss_pred hHHHHHHHHHhcCCeEEEEe
Q 026977 57 LMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 57 lM~ava~gA~~~GG~viGI~ 76 (230)
-|=.+++-+...+-.++||-
T Consensus 80 T~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 80 TFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred HHHHHHHHhcccCCCEEEEe
Confidence 67666666656666778873
No 125
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=40.93 E-value=3.5e+02 Score=26.33 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=79.1
Q ss_pred CcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeEEEcCCCc-------chHHHHHHHHHhcCCeEEEEeCCc
Q 026977 9 KNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVAR--RLDLVYGGGSI-------GLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 9 ~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~--g~~lVtGGg~~-------GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
|+...+++...|+-.....+ ......++-+.|.+. |..+++=|.-. -...++.++....+-+++=-....
T Consensus 260 ~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~ 338 (507)
T PHA03392 260 NRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE 338 (507)
T ss_pred CCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44445566666663321100 001122455556554 45556655421 245666666666665554322211
Q ss_pred ccccccCCCCCceEeecCCHHHHHHHHH-hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHH
Q 026977 80 LMNKEITGETVGEVRPVADMHQRKAEMA-RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFI 158 (230)
Q Consensus 80 ~~~~e~~~~~~~e~i~~~~m~~Rk~~m~-~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l 158 (230)
..+. +.-..+.+.+-+..+ .+|. ..+++|| -=||.||..|.. .+++|++++.. |+|.... .
T Consensus 339 ~~~~----~~p~Nv~i~~w~Pq~-~lL~hp~v~~fI-tHGG~~s~~Eal---------~~GvP~v~iP~--~~DQ~~N-a 400 (507)
T PHA03392 339 VEAI----NLPANVLTQKWFPQR-AVLKHKNVKAFV-TQGGVQSTDEAI---------DALVPMVGLPM--MGDQFYN-T 400 (507)
T ss_pred cCcc----cCCCceEEecCCCHH-HHhcCCCCCEEE-ecCCcccHHHHH---------HcCCCEEECCC--CccHHHH-H
Confidence 1110 111234455555543 3332 3466555 457788888775 35999999853 4555433 4
Q ss_pred HHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 026977 159 DKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEYV 192 (230)
Q Consensus 159 ~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~~ 192 (230)
+.+.+.|.--. .+.- .-+.+++.+.+.+..
T Consensus 401 ~rv~~~G~G~~--l~~~--~~t~~~l~~ai~~vl 430 (507)
T PHA03392 401 NKYVELGIGRA--LDTV--TVSAAQLVLAIVDVI 430 (507)
T ss_pred HHHHHcCcEEE--eccC--CcCHHHHHHHHHHHh
Confidence 55566663311 1111 115667766666554
No 126
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=40.44 E-value=1e+02 Score=30.23 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=48.9
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHH-HH
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLE-EL 126 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~-El 126 (230)
+|.|.|+.| ..+++-++..|.+|+.+-+......+.....+ .+.++.+ +++.||.||..+|.-+.++ |.
T Consensus 258 gVIG~G~IG--r~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~lee----ll~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGDVG--KGCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLED----VVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHHH----HHhcCCEEEECCCcccccCHHH
Confidence 477877644 35667777788888776322111100001111 1123432 4578999999998777775 55
Q ss_pred HHHHHHHHcCCCCCcEEEEecCCcc
Q 026977 127 LEVITWAQLGIHDKPVGLLNVDGYY 151 (230)
Q Consensus 127 ~~~~t~~qlg~~~kPivlln~~G~~ 151 (230)
+..+ +.-.+|.|...+.
T Consensus 328 ~~~M--------KpGAiLINvGr~d 344 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFD 344 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCc
Confidence 5443 4446778886554
No 127
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=40.30 E-value=77 Score=28.04 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHHHhhcCeEEEe--cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 103 KAEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 103 k~~m~~~sDa~I~l--PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
...+...||++|.- ..|.|.- ++|++. .++||+..+..+ ... ++.+ .....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~-~~e-------~i~~-----~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG-PRD-------IVVD-----GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC-HHH-------HccC-----CCCeEEeCCCC
Confidence 34456779988753 3455532 566664 389998876543 222 1211 12233333468
Q ss_pred HHHHHHHHHhhcC
Q 026977 181 AKELVQKLEEYVP 193 (230)
Q Consensus 181 ~ee~~~~l~~~~~ 193 (230)
++++.+.|.+...
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 128
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.71 E-value=1.8e+02 Score=26.38 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=39.1
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE------------------------------EEcCCCcchHHHH
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL------------------------------VYGGGSIGLMGLV 61 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l------------------------------VtGGg~~GlM~av 61 (230)
.+++|+|+.-. . ++...+.+.++.++|.++|+.+ |+=||. |-+-.+
T Consensus 4 ~~~~i~iv~~~--~-~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L~a 79 (292)
T PRK03378 4 HFKCIGIVGHP--R-HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNMLGA 79 (292)
T ss_pred cCCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHHHH
Confidence 47789999532 2 4566677888888886655433 344555 777666
Q ss_pred HHHHHhcCCeEEEE
Q 026977 62 SKAVHHGGGNVIGI 75 (230)
Q Consensus 62 a~gA~~~GG~viGI 75 (230)
++.+...+-.++||
T Consensus 80 a~~~~~~~~Pilgi 93 (292)
T PRK03378 80 ARVLARYDIKVIGI 93 (292)
T ss_pred HHHhcCCCCeEEEE
Confidence 66665556677777
No 129
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=39.71 E-value=2.2e+02 Score=25.44 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-eEEEEeCCcccccccCC-CCCceEeecC--CHHHHHHHHHhhcCeEEEecCCc
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITG-ETVGEVRPVA--DMHQRKAEMARHSDCFIALPGGY 120 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI~P~~~~~~e~~~-~~~~e~i~~~--~m~~Rk~~m~~~sDa~I~lPGG~ 120 (230)
...+|+|+|+.|+|- ..-|+..|. +++.+..... ..+... -..+.++... ++.+... .....|.++=..|+.
T Consensus 171 ~~VlV~G~G~vG~~a--iqlak~~G~~~Vi~~~~~~~-~~~~a~~lGa~~vi~~~~~~~~~~~~-~~g~~D~vid~~G~~ 246 (343)
T PRK09880 171 KRVFVSGVGPIGCLI--VAAVKTLGAAEIVCADVSPR-SLSLAREMGADKLVNPQNDDLDHYKA-EKGYFDVSFEVSGHP 246 (343)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCcEEEEEeCCHH-HHHHHHHcCCcEEecCCcccHHHHhc-cCCCCCEEEECCCCH
Confidence 467788887777764 345666676 5666632211 111110 1112222211 2221111 011258888888876
Q ss_pred ccHHHHHHHH
Q 026977 121 GTLEELLEVI 130 (230)
Q Consensus 121 GTL~El~~~~ 130 (230)
-++++.+..+
T Consensus 247 ~~~~~~~~~l 256 (343)
T PRK09880 247 SSINTCLEVT 256 (343)
T ss_pred HHHHHHHHHh
Confidence 6777776655
No 130
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=39.18 E-value=70 Score=30.57 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=47.3
Q ss_pred CeEEEcCCCcchHHHHHHHHHh--------------------cCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHH
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHH--------------------GGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAE 105 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~--------------------~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~ 105 (230)
+.+-+|-|| |+.+-..+-+.+ .+|+|.||--..+.|.....-..+.-.+.-+
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~Gd------- 212 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGD------- 212 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecc-------
Confidence 678899999 999888877766 3677788754444332221111111111222
Q ss_pred HHhhcCeEEEecCCcccHHHHHH
Q 026977 106 MARHSDCFIALPGGYGTLEELLE 128 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~ 128 (230)
+.-++.++|+-.||+|-=.|+.-
T Consensus 213 Fef~A~aviv~SGGIGGnhelVR 235 (552)
T COG3573 213 FEFSASAVIVASGGIGGNHELVR 235 (552)
T ss_pred eEEeeeeEEEecCCcCCCHHHHH
Confidence 33468899999999999888763
No 131
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=39.06 E-value=1.5e+02 Score=25.68 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=41.9
Q ss_pred HHHHHhhcCeEEEec---CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 103 KAEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 103 k~~m~~~sDa~I~lP---GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
....+..||++|.-. .|+|+ =++|++. .++|++..+..+ ...++. ++ ....+.-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGG-ARETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCC-cHHHHh-------CC-----CceEEeCCC
Confidence 344567899887643 34553 2456664 399999887654 333222 11 134455568
Q ss_pred CHHHHHHHHHhh
Q 026977 180 NAKELVQKLEEY 191 (230)
Q Consensus 180 d~ee~~~~l~~~ 191 (230)
|++++.+.|...
T Consensus 316 ~~~~l~~~i~~~ 327 (355)
T cd03819 316 DAEALAQALDQI 327 (355)
T ss_pred CHHHHHHHHHHH
Confidence 999999999654
No 132
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=39.02 E-value=84 Score=26.93 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 104 ~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
......||++|.-. .|.|. =++|+++ .++||+..+..+. ..+ +.+.....+.-.+|.
T Consensus 261 ~~~~~~~d~~l~~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~~-~~~------------i~~~~~g~~~~~~~~ 319 (364)
T cd03814 261 AAAYASADVFVFPSRTETFGL--VVLEAMA------SGLPVVAPDAGGP-ADI------------VTDGENGLLVEPGDA 319 (364)
T ss_pred HHHHHhCCEEEECcccccCCc--HHHHHHH------cCCCEEEcCCCCc-hhh------------hcCCcceEEcCCCCH
Confidence 34668899876532 12232 1455654 3999998765542 221 112223445556788
Q ss_pred HHHHHHHHhhcC
Q 026977 182 KELVQKLEEYVP 193 (230)
Q Consensus 182 ee~~~~l~~~~~ 193 (230)
+++.+.|.+...
T Consensus 320 ~~l~~~i~~l~~ 331 (364)
T cd03814 320 EAFAAALAALLA 331 (364)
T ss_pred HHHHHHHHHHHc
Confidence 888888888654
No 133
>PLN02275 transferase, transferring glycosyl groups
Probab=39.01 E-value=2.1e+02 Score=26.00 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCeEEEe-cC--CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 101 QRKAEMARHSDCFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~l-PG--G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
+.-..+...||++|.. +. |.|--.=+.|+++ .++||+..+.+|. . .++.+| ....+
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~-~-------eiv~~g-----~~G~l-- 356 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI-G-------ELVKDG-----KNGLL-- 356 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh-H-------HHccCC-----CCeEE--
Confidence 3344567899999863 12 2333344666765 3999999876542 1 222221 12222
Q ss_pred cCCHHHHHHHHHhh
Q 026977 178 APNAKELVQKLEEY 191 (230)
Q Consensus 178 ~~d~ee~~~~l~~~ 191 (230)
++|++++.+.|.+.
T Consensus 357 v~~~~~la~~i~~l 370 (371)
T PLN02275 357 FSSSSELADQLLEL 370 (371)
T ss_pred ECCHHHHHHHHHHh
Confidence 35788888877653
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=38.98 E-value=93 Score=29.73 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=41.6
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHH
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEE 125 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~E 125 (230)
..+|.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ .+.++. . .+..+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 3457888877665 555667778888887322211111111111 112342 2 34779999999988887764
Q ss_pred -HHH
Q 026977 126 -LLE 128 (230)
Q Consensus 126 -l~~ 128 (230)
.+.
T Consensus 267 ~~~~ 270 (406)
T TIGR00936 267 EHFE 270 (406)
T ss_pred HHHh
Confidence 443
No 135
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=38.82 E-value=60 Score=27.53 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=50.5
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHH-------HcCCCCCcEEEEecCCcchHH--HHHHHHHHHcCCC-CccccCcEEEc
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLLNVDGYYNYL--LTFIDKAVDDGFI-KPSQRNIIVSA 178 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~-------qlg~~~kPivlln~~G~~~~l--~~~l~~~~~~gfi-~~~~~~~i~~~ 178 (230)
.+|++|+.|=-.+|+.-+..=++-. ..-..++|+++... ..|..- .+-++.+.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 4799999999999987765321110 11125899999875 577633 2334556666652 22223444445
Q ss_pred CCHHHHHHHHHh
Q 026977 179 PNAKELVQKLEE 190 (230)
Q Consensus 179 ~d~ee~~~~l~~ 190 (230)
.+.+|+++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 799999998874
No 136
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.81 E-value=79 Score=27.86 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=25.2
Q ss_pred eEEEcCCCcchHHHHHHHHHhcC-CeEEEEeCCc
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIPRT 79 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~G-G~viGI~P~~ 79 (230)
.||.-||. |-...++++..... ...+||+|..
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 56777887 99999999988744 3479999954
No 137
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=38.72 E-value=1.9e+02 Score=26.48 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCeEEEecC---CcccHHHHHHHHHHHHcCCCCCcEEEEecCCcch
Q 026977 101 QRKAEMARHSDCFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 152 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPG---G~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~ 152 (230)
++-..+...=+|+|+=|| --+++.++..++... ...++|+++ +.+|.|-
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~--~~~dvP~VI-DaDGL~L 144 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYL--RGKDVPLVI-DADGLWL 144 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHH--hcCCCcEEE-cCCceEe
Confidence 444557788899998886 345677777766442 234789865 7788874
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=38.70 E-value=98 Score=29.75 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHC---------CCeEEEcCCCcc---hHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHH
Q 026977 33 AAIDLAHELVAR---------RLDLVYGGGSIG---LMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMH 100 (230)
Q Consensus 33 ~A~~LG~~LA~~---------g~~lVtGGg~~G---lM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~ 100 (230)
.|...++.+|+. +..++||+-.+| |+.|++..+...|.+++-+....+.. + +.+.+....+
T Consensus 121 ~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~-----~~~~l~~~~~- 193 (445)
T PRK12422 121 LPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-H-----LVSAIRSGEM- 193 (445)
T ss_pred HHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-H-----HHHHHhcchH-
Confidence 445555555531 345788765544 88888888888777776653322111 0 0000001122
Q ss_pred HHHHHHHhhcCeEEE-----ecCCcccHHHHHHHHHHHHcCCCCCcEEEE
Q 026977 101 QRKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 145 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~-----lPGG~GTL~El~~~~t~~qlg~~~kPivll 145 (230)
++-+......|++++ +.|.-.|.+|++..+.... ..++++++.
T Consensus 194 ~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlt 241 (445)
T PRK12422 194 QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVIS 241 (445)
T ss_pred HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEe
Confidence 122223456776665 3555668888887764322 235777665
No 139
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=38.43 E-value=37 Score=30.07 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=19.8
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCeEE
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGGNVI 73 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG~vi 73 (230)
.|+|||+. |+=.+.++...+.|-.||
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VI 33 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEE
Confidence 45777776 888888888888877765
No 140
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=38.24 E-value=1.9e+02 Score=25.63 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=23.7
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcC-CCCCcEEEEe
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLN 146 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg-~~~kPivlln 146 (230)
.| .|+.-||=||++|+...+. ..+ ....|+.++.
T Consensus 53 ~d-~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 53 VS-TVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred CC-EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 45 6668899999999998773 211 1245788884
No 141
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.14 E-value=37 Score=31.20 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=25.4
Q ss_pred HCCCeEEEcCCCcchHHHHHHHHHhcCCeEE
Q 026977 43 ARRLDLVYGGGSIGLMGLVSKAVHHGGGNVI 73 (230)
Q Consensus 43 ~~g~~lVtGGg~~GlM~ava~gA~~~GG~vi 73 (230)
+.+..||||||. ||=++.+....+.|..++
T Consensus 37 ~g~~vLITGgg~-GlGr~ialefa~rg~~~v 66 (300)
T KOG1201|consen 37 SGEIVLITGGGS-GLGRLIALEFAKRGAKLV 66 (300)
T ss_pred cCCEEEEeCCCc-hHHHHHHHHHHHhCCeEE
Confidence 368889999998 999999999999888543
No 142
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=38.06 E-value=62 Score=25.22 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH----CCCeE-EE--cCC-CcchHHHHHHHHHhcCC
Q 026977 31 SDAAIDLAHELVA----RRLDL-VY--GGG-SIGLMGLVSKAVHHGGG 70 (230)
Q Consensus 31 ~~~A~~LG~~LA~----~g~~l-Vt--GGg-~~GlM~ava~gA~~~GG 70 (230)
.+.|+.+|+.||+ .|+.- ++ ||. ..|-+.|++++|.++|-
T Consensus 60 ~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 4588889999986 35433 22 331 25899999999999873
No 143
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=38.06 E-value=40 Score=28.04 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=17.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHH
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAID 36 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~ 36 (230)
|++|||||||=++..--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 467999999987766566555554
No 144
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.83 E-value=57 Score=30.66 Aligned_cols=114 Identities=26% Similarity=0.384 Sum_probs=62.4
Q ss_pred cccCcCCcceEEEEc-CCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCCcchHHHHHHHHHhcC-CeEEEEeCCcccc
Q 026977 6 KIQKNSRFKRVCVFC-GSSTGKRNCYSDAAIDLAHELVARRLDL-VYGGGSIGLMGLVSKAVHHGG-GNVIGIIPRTLMN 82 (230)
Q Consensus 6 ~~~~~~~~~~V~Vfg-gS~~~~~~~~~~~A~~LG~~LA~~g~~l-VtGGg~~GlM~ava~gA~~~G-G~viGI~P~~~~~ 82 (230)
||.|.-...++|..+ |-+.+..... ..++ .+.|-++ |+|-|.+|| +++.||+.+| .+.||| +...+
T Consensus 160 kId~~aPl~kvcLLgCGvsTG~GAa~-----~~Ak--v~~GstvAVfGLG~VGL--av~~Gaka~GAsrIIgv--DiN~~ 228 (375)
T KOG0022|consen 160 KIDPSAPLEKVCLLGCGVSTGYGAAW-----NTAK--VEPGSTVAVFGLGGVGL--AVAMGAKAAGASRIIGV--DINPD 228 (375)
T ss_pred ecCCCCChhheeEeeccccccchhhh-----hhcc--cCCCCEEEEEecchHHH--HHHHhHHhcCcccEEEE--ecCHH
Confidence 677777777788774 4444432222 2221 2456666 888886665 7889999887 589999 22111
Q ss_pred c-ccC-CCCCceEeecCC----HHHHHHHHHhh-cCeEEEecCCcccHHHHHHHH
Q 026977 83 K-EIT-GETVGEVRPVAD----MHQRKAEMARH-SDCFIALPGGYGTLEELLEVI 130 (230)
Q Consensus 83 ~-e~~-~~~~~e~i~~~~----m~~Rk~~m~~~-sDa~I~lPGG~GTL~El~~~~ 130 (230)
+ +.. .-..++.+-..+ ..++-.-|.+. .|.-.=.-|..-||.|.++..
T Consensus 229 Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~ 283 (375)
T KOG0022|consen 229 KFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESC 283 (375)
T ss_pred HHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHh
Confidence 1 000 012234443332 45555555442 233334467777777776654
No 145
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=37.83 E-value=61 Score=24.28 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHhhcCeEEEec-CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 102 RKAEMARHSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 102 Rk~~m~~~sDa~I~lP-GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
....++..+|+.|..- =+.++-.-+++++. .++|++..+. + +..+ ....... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGI------------VEEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCH------------S---SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhh------------eeecCCe-EEECCC
Confidence 3455577899777632 13356666676663 5999998765 2 2222 1111223 444999
Q ss_pred HHHHHHHHHhhc
Q 026977 181 AKELVQKLEEYV 192 (230)
Q Consensus 181 ~ee~~~~l~~~~ 192 (230)
++++.+.|.+..
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 146
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=37.81 E-value=72 Score=26.81 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=48.4
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHH-------HcCCCCCcEEEEecCCcchHH--HHHHHHHHHcCC--CCccccCcEEE
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLLNVDGYYNYL--LTFIDKAVDDGF--IKPSQRNIIVS 177 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~-------qlg~~~kPivlln~~G~~~~l--~~~l~~~~~~gf--i~~~~~~~i~~ 177 (230)
.+|++|+.|=-.+|+.-+..=++-. ..-..++|+++.-.+ .|..- .+-++.+.+.|+ +++. ...+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P~-~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPPM-PAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECCC-CcccCC
Confidence 4899999999999988765311100 011257999998754 55432 222334555553 3333 344555
Q ss_pred cCCHHHHHHHHHh
Q 026977 178 APNAKELVQKLEE 190 (230)
Q Consensus 178 ~~d~ee~~~~l~~ 190 (230)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 6899998887764
No 147
>PRK15494 era GTPase Era; Provisional
Probab=37.77 E-value=3.2e+02 Score=24.98 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=44.3
Q ss_pred HhhcCeEEEecCCcccHHHHHHHHHHHHcCCCC-CcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc----CCH
Q 026977 107 ARHSDCFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA----PNA 181 (230)
Q Consensus 107 ~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~-kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~----~d~ 181 (230)
+..||++|++--..-++++....+ +..+...+ .|++++|.....+.....+.....+.+. ....+.++ ...
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 467998887643333333332211 12222223 4555567543322211222222222110 12233332 478
Q ss_pred HHHHHHHHhhcCCCcccccc
Q 026977 182 KELVQKLEEYVPVHDGVIAK 201 (230)
Q Consensus 182 ee~~~~l~~~~~~~~~~~~~ 201 (230)
++++++|.+..|..+..++.
T Consensus 205 ~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 205 DGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred HHHHHHHHHhCCCCCCCCCC
Confidence 99999999988877656653
No 148
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=37.65 E-value=3.4e+02 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=30.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCCcchHHHHHHH
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL-VYGGGSIGLMGLVSKA 64 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l-VtGGg~~GlM~ava~g 64 (230)
+++|+|+|+.+.+ ..|+..||++||.+ +||=-+ .++..++..
T Consensus 1 ~~kI~ViGaGswG---------TALA~~la~ng~~V~lw~r~~-~~~~~i~~~ 43 (329)
T COG0240 1 MMKIAVIGAGSWG---------TALAKVLARNGHEVRLWGRDE-EIVAEINET 43 (329)
T ss_pred CceEEEEcCChHH---------HHHHHHHHhcCCeeEEEecCH-HHHHHHHhc
Confidence 4689999976655 27888999999888 555444 777776555
No 149
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.46 E-value=1.9e+02 Score=25.12 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
....+|.++... + +.++++++.|-.+|..+|+..+. +. .+..+|.+.|..+||+-
T Consensus 153 ~v~~~~~g~~~D--~---~~a~~~a~~l~~~G~DvI~~~~~-~~--g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 153 TVKVIWTGSWFD--P---AKEKEAALALIDQGADVIYQHTD-SP--GVIQAAEEKGVYAIGYV 207 (258)
T ss_pred EEEEEEecCCCC--c---HHHHHHHHHHHHCCCcEEEecCC-Ch--HHHHHHHHhCCEEEeec
Confidence 345556555432 2 45667777777889999998862 42 45566778899999993
No 150
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=37.39 E-value=33 Score=27.18 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=26.8
Q ss_pred HHHHHHhhcCeEEEe--cC---CcccHHHHHHHHHHHHcCCCCCcEEEE
Q 026977 102 RKAEMARHSDCFIAL--PG---GYGTLEELLEVITWAQLGIHDKPVGLL 145 (230)
Q Consensus 102 Rk~~m~~~sDa~I~l--PG---G~GTL~El~~~~t~~qlg~~~kPivll 145 (230)
=.+.+++.||++|++ || ..|+--|+-.+..+ ++||.++
T Consensus 72 ~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~------~~~V~~~ 114 (116)
T PF09152_consen 72 WDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEM------GMPVFLY 114 (116)
T ss_dssp HHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHT------T-EEEEH
T ss_pred HhHHHHHhcceeEEecCCCccccccHHHHHHHHHHc------CCeEEEe
Confidence 345678999999997 46 78999999888764 8999875
No 151
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=37.19 E-value=2.7e+02 Score=23.96 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=41.0
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKEL 184 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 184 (230)
.++..||++|.-...-|.-.=++|++.. ++|++..+..+ ...+ +.+ ...++-.+|++++
T Consensus 258 ~~~~~ad~~v~~s~~e~~~~~~~Ea~a~------G~PvI~~~~~~-~~e~------------i~~--~g~~~~~~~~~~~ 316 (360)
T cd04951 258 AYYNAADLFVLSSAWEGFGLVVAEAMAC------ELPVVATDAGG-VREV------------VGD--SGLIVPISDPEAL 316 (360)
T ss_pred HHHHhhceEEecccccCCChHHHHHHHc------CCCEEEecCCC-hhhE------------ecC--CceEeCCCCHHHH
Confidence 4578899877654321212235666653 89999876543 2211 111 3345667899999
Q ss_pred HHHHHhhc
Q 026977 185 VQKLEEYV 192 (230)
Q Consensus 185 ~~~l~~~~ 192 (230)
.+.+.+..
T Consensus 317 ~~~i~~ll 324 (360)
T cd04951 317 ANKIDEIL 324 (360)
T ss_pred HHHHHHHH
Confidence 99998875
No 152
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=37.10 E-value=74 Score=22.80 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=24.3
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 149 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G 149 (230)
.--+|.|| +|++|+..+.. .++|.. |--+++.+|
T Consensus 18 ~GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 18 AGKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CCEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 34678899 59999999875 567764 555666554
No 153
>PLN02591 tryptophan synthase
Probab=37.10 E-value=1.9e+02 Score=25.66 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcC
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLT-----FIDKAVDDG 165 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~-----~l~~~~~~g 165 (230)
|++.+++.+.-.+ ...+.|++++ +||+++.. |++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcC
Confidence 6677777765433 2357898877 47775544 677776665
No 154
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=37.05 E-value=1.7e+02 Score=27.08 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=18.6
Q ss_pred CeEEEecCCcccHHHHHHHHHH
Q 026977 111 DCFIALPGGYGTLEELLEVITW 132 (230)
Q Consensus 111 Da~I~lPGG~GTL~El~~~~t~ 132 (230)
-..|.+|-..|.|.++...+..
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~ 328 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAE 328 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 4667789999999999998864
No 155
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=37.00 E-value=2.7e+02 Score=23.82 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=38.9
Q ss_pred HHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 104 ~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
..+...||++|.-. .|+|.- ++|++. .++||+..+..++-+ +. . ....++..+|+
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~--~~Ea~a------~G~pvI~~~~~~~~e-~~-------~-------~~~~~~~~~~~ 323 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLP--VLEAMA------CGTPVIASNISSLPE-VA-------G-------DAALYFDPLDP 323 (365)
T ss_pred HHHHhhhhhhcccchhccCCCC--HHHHhc------CCCcEEecCCCCccc-ee-------c-------CceeeeCCCCH
Confidence 34567788665431 122221 455554 489999876643322 11 1 12345667789
Q ss_pred HHHHHHHHhhcC
Q 026977 182 KELVQKLEEYVP 193 (230)
Q Consensus 182 ee~~~~l~~~~~ 193 (230)
+++.+.|.+...
T Consensus 324 ~~~~~~i~~l~~ 335 (365)
T cd03809 324 EALAAAIERLLE 335 (365)
T ss_pred HHHHHHHHHHhc
Confidence 999999988643
No 156
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=36.90 E-value=70 Score=28.80 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=27.6
Q ss_pred CcccccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 1 MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
||.||.- |. .++|.|.|++.. ....|.+.|.++|+.|+.
T Consensus 1 ~~~~~~~-~~--~~~vLVtG~~Gf--------IG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 1 MELEGRE-SA--TGTYCVTGATGY--------IGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred CCccccc-cC--CCEEEEECCCcH--------HHHHHHHHHHHCCCEEEE
Confidence 7888763 33 347999997752 445677778889998774
No 157
>PRK13057 putative lipid kinase; Reviewed
Probab=36.79 E-value=79 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=24.4
Q ss_pred hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 108 ~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
...| .|+.-||=||+.|+...+. ..+.|+.++.
T Consensus 49 ~~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 49 DGVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred cCCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 3446 5667899999999987763 2467888885
No 158
>PRK06756 flavodoxin; Provisional
Probab=36.56 E-value=79 Score=24.90 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=35.6
Q ss_pred HhhcCeEEEec-C-CcccHHH-HHHHHHH-HHcCCCCCcEEEEecCC--cc--hHHHHHH-HHHHHcCCCCccccCcEEE
Q 026977 107 ARHSDCFIALP-G-GYGTLEE-LLEVITW-AQLGIHDKPVGLLNVDG--YY--NYLLTFI-DKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 107 ~~~sDa~I~lP-G-G~GTL~E-l~~~~t~-~qlg~~~kPivlln~~G--~~--~~l~~~l-~~~~~~gfi~~~~~~~i~~ 177 (230)
+..+|++|+-. = +.|.+.. +...+.. ..+...+||+.++...+ |+ ..-...| +.+.+.|+---...-.+..
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 34577666642 2 3354433 3333332 12345689999997632 22 2333333 4455556433333333444
Q ss_pred cCCH
Q 026977 178 APNA 181 (230)
Q Consensus 178 ~~d~ 181 (230)
..+.
T Consensus 127 ~p~~ 130 (148)
T PRK06756 127 TPED 130 (148)
T ss_pred CCCH
Confidence 4443
No 159
>PRK07524 hypothetical protein; Provisional
Probab=36.53 E-value=3.3e+02 Score=26.28 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHC-CCeEEEcCCCcchHHHHHHHHHhcCCeEE------EEeCCcccccccCCCCCceEeecCCHHHHHH
Q 026977 32 DAAIDLAHELVAR-RLDLVYGGGSIGLMGLVSKAVHHGGGNVI------GIIPRTLMNKEITGETVGEVRPVADMHQRKA 104 (230)
Q Consensus 32 ~~A~~LG~~LA~~-g~~lVtGGg~~GlM~ava~gA~~~GG~vi------GI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~ 104 (230)
+...++.+.|.+. .-.++.|+|-.+..+++.+=|-..|-.|+ |++|+. |+.+.-. ..+....+.
T Consensus 189 ~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~kg~~p~~-------hp~~~G~--~~~~~~~~~ 259 (535)
T PRK07524 189 AALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAG-------HPLLLGA--SQSLPAVRA 259 (535)
T ss_pred HHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccccccCCCC-------ChhhccC--CCCCHHHHH
Confidence 4566777778774 45556666654555555555555676665 333321 1111111 112234444
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKEL 184 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~ 184 (230)
+ ++.||.+|+++-.++..+- ...+.+ .. ..+++++-++.+.. .+ . ......+.+..|+.+.
T Consensus 260 ~-~~~aDlvl~vG~~~~~~~~-~~~~~~-~~-~~~~~~i~id~d~~---------~~-~-----~~~~~~~~i~~D~~~~ 320 (535)
T PRK07524 260 L-IAEADVVLAVGTELGETDY-DVYFDG-GF-PLPGELIRIDIDPD---------QL-A-----RNYPPALALVGDARAA 320 (535)
T ss_pred H-HHhCCEEEEeCCCcCcccc-cccccc-cc-CCCCCEEEEECCHH---------Hh-C-----CCcCCCceEecCHHHH
Confidence 4 4689999999866543320 000000 00 11356777776521 01 1 1112356778889999
Q ss_pred HHHHHhhcCC
Q 026977 185 VQKLEEYVPV 194 (230)
Q Consensus 185 ~~~l~~~~~~ 194 (230)
++.|.+..+.
T Consensus 321 L~~L~~~l~~ 330 (535)
T PRK07524 321 LEALLARLPG 330 (535)
T ss_pred HHHHHHhccc
Confidence 9988876543
No 160
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.42 E-value=1.9e+02 Score=26.21 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=35.8
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCcchHHHH
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD------------------------------LVYGGGSIGLMGLV 61 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~------------------------------lVtGGg~~GlM~av 61 (230)
++++|+|+.-.. .+.-.+.++++.++|.++|+. +++-||. |-+--+
T Consensus 3 ~~~~v~iv~~~~---k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 78 (295)
T PRK01231 3 SFRNIGLIGRLG---SSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLLGA 78 (295)
T ss_pred CCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHHHH
Confidence 366799995322 245556677777766554433 4455555 755555
Q ss_pred HHHHHhcCCeEEEEe
Q 026977 62 SKAVHHGGGNVIGII 76 (230)
Q Consensus 62 a~gA~~~GG~viGI~ 76 (230)
++.+...+-.++||-
T Consensus 79 ~~~~~~~~~Pvlgin 93 (295)
T PRK01231 79 ARALARHNVPVLGIN 93 (295)
T ss_pred HHHhcCCCCCEEEEe
Confidence 555555556777773
No 161
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=36.39 E-value=1.6e+02 Score=26.43 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 102 RKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 102 Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
+...++..||++|. +.| +. +.|++. .++|++.....+-+..+ +..| ..+.+..|+
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~~e~-------~~~g-------~~~lv~~d~ 321 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTERPET-------VEAG-------TNKLVGTDK 321 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCChHH-------HhcC-------ceEEeCCCH
Confidence 34445677887654 443 22 344454 39999987432223321 1111 123445799
Q ss_pred HHHHHHHHhhcC
Q 026977 182 KELVQKLEEYVP 193 (230)
Q Consensus 182 ee~~~~l~~~~~ 193 (230)
+++.+.+.+...
T Consensus 322 ~~i~~ai~~ll~ 333 (365)
T TIGR00236 322 ENITKAAKRLLT 333 (365)
T ss_pred HHHHHHHHHHHh
Confidence 999999888654
No 162
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=36.19 E-value=1.3e+02 Score=25.69 Aligned_cols=72 Identities=17% Similarity=0.321 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCeEEEe---cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 101 QRKAEMARHSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~l---PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
+...-+...||++|.- ..|.|.- ++|++. .++|++.-+..+ ...+ +. ......++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~-~~e~-------i~-----~~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLV--IREALA------AGVPVIASDIGG-MAEL-------VR-----DGVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChH--HHHHHH------CCCCEEECCCCC-HHHH-------hc-----CCCcEEEEC
Confidence 4445567889988753 2344432 455554 489999876543 2221 11 112344555
Q ss_pred cCCHHHHHHHHHhhcC
Q 026977 178 APNAKELVQKLEEYVP 193 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~ 193 (230)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6679999999988765
No 163
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=36.18 E-value=83 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=24.9
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCC----eEEEEeCCc
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGG----NVIGIIPRT 79 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG----~viGI~P~~ 79 (230)
.||..||. |....+..+..+... ..+|++|..
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 66777777 999999998887654 469999854
No 164
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.14 E-value=76 Score=28.51 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
|+|+|+. +.+ .+.-.+.+.++.++|.++|+.+..
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v 34 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVV 34 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4688884 332 355567888999999999998875
No 165
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.08 E-value=2e+02 Score=25.72 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe--------EEEcCCCcchHHHHHHHHHh--cCCeEEEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD--------LVYGGGSIGLMGLVSKAVHH--GGGNVIGI 75 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~--------lVtGGg~~GlM~ava~gA~~--~GG~viGI 75 (230)
|+|+|+. + . .+...+.+.++-++|.++|+. +++=||. |-|=-+++-+.. .+-.++||
T Consensus 1 M~i~Ii~--~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGD-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 1 MKVAIIS--N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGGD-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred CEEEEEe--C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECCc-HHHHHHHHHhcccCCCCeEEEE
Confidence 3588883 3 2 466668899999988776643 3444566 777666665554 45566776
No 166
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=35.98 E-value=67 Score=29.41 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=30.4
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtG 51 (230)
|.+|+|++|......+.-...|+.+.+.|.+.||.++.-
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 347888877665556666789999999999999998644
No 167
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=35.91 E-value=1.1e+02 Score=29.38 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=45.7
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHH-
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLE- 124 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~- 124 (230)
..+|.|.|+.|. .++..++..|.+|+.+-.+.....+.....+ + +.++.+ ..+.+|.+|...|-.++++
T Consensus 214 ~VlViG~G~IG~--~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~e----al~~aDVVI~aTG~~~vI~~ 283 (425)
T PRK05476 214 VVVVAGYGDVGK--GCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTMEE----AAELGDIFVTATGNKDVITA 283 (425)
T ss_pred EEEEECCCHHHH--HHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHHH----HHhCCCEEEECCCCHHHHHH
Confidence 356888877664 4566677778887776322211111111111 1 123432 2468999999887666665
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecC
Q 026977 125 ELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 125 El~~~~t~~qlg~~~kPivlln~~ 148 (230)
+.+..+ ++-.+++|..
T Consensus 284 ~~~~~m--------K~GailiNvG 299 (425)
T PRK05476 284 EHMEAM--------KDGAILANIG 299 (425)
T ss_pred HHHhcC--------CCCCEEEEcC
Confidence 344332 3335666764
No 168
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=35.71 E-value=1.2e+02 Score=28.61 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEc
Q 026977 101 QRKAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSA 178 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 178 (230)
+....++..||++|.-. .|+|. =++|++. .++||+..+..|. ..++. +. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~eiv~-------~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDIIP-------PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhhhh-------cC--CCCCceEEeCC
Confidence 34455778999988532 24443 2556665 3899998876543 22221 10 00123344446
Q ss_pred CCHHHHHHHHHhhcC
Q 026977 179 PNAKELVQKLEEYVP 193 (230)
Q Consensus 179 ~d~ee~~~~l~~~~~ 193 (230)
+|++++.+.|.+...
T Consensus 385 ~d~~~la~~i~~ll~ 399 (465)
T PLN02871 385 GDVDDCVEKLETLLA 399 (465)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789998888887654
No 169
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=35.70 E-value=80 Score=23.66 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCeEEEecC---CcccHHHHHHHHHHHHcCCCCCcEE
Q 026977 101 QRKAEMARHSDCFIALPG---GYGTLEELLEVITWAQLGIHDKPVG 143 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPG---G~GTL~El~~~~t~~qlg~~~kPiv 143 (230)
.+.-.++..||+++.||| .-|..-|+..+-.+ ++||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~l------Gl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKKL------GLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHC------CCeEe
Confidence 445556679999999999 67889998877543 66664
No 170
>PRK13059 putative lipid kinase; Reviewed
Probab=35.63 E-value=98 Score=27.61 Aligned_cols=35 Identities=29% Similarity=0.680 Sum_probs=24.4
Q ss_pred hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 108 ~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
+..| .|+.-||=||++|+...+. +.+ .+.|+.++.
T Consensus 55 ~~~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgviP 89 (295)
T PRK13059 55 ESYK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGILP 89 (295)
T ss_pred cCCC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEEC
Confidence 3446 5667899999999987763 211 247888884
No 171
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=35.59 E-value=37 Score=32.50 Aligned_cols=27 Identities=37% Similarity=0.652 Sum_probs=20.3
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
.+|-|||+.|+|.|+.- .++|.+|+=|
T Consensus 6 viIIGgGpAGlMaA~~a--a~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISA--AKAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHH--hhcCCEEEEE
Confidence 56889999999988764 3466666655
No 172
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=35.31 E-value=3.2e+02 Score=24.18 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 026977 106 MARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKE 183 (230)
Q Consensus 106 m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 183 (230)
+...||++|... .|+|. =+.|++. +++||+..+....-.. + +.+.....+.-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~-------~-----v~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSE-------I-----IEDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHH-------H-----cccCCCceEeCCCcHHH
Confidence 457799888764 24442 2555654 4999999876421121 1 22223334444469999
Q ss_pred HHHHHHhhcCC
Q 026977 184 LVQKLEEYVPV 194 (230)
Q Consensus 184 ~~~~l~~~~~~ 194 (230)
+.+.|.++...
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 99999887654
No 173
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.31 E-value=2e+02 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=18.6
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
.+++-||. |-+-.+++.....+-.++||
T Consensus 60 ~vi~~GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 60 LAIVLGGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred EEEEECCc-HHHHHHHHHhccCCCCEEEE
Confidence 45556677 88888888776555455554
No 174
>PRK06182 short chain dehydrogenase; Validated
Probab=35.09 E-value=2.8e+02 Score=23.57 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=14.7
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
..+||||+. |+=.++++...+.|-+|+++
T Consensus 5 ~vlItGasg-giG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 5 VALVTGASS-GIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred EEEEECCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 345555554 55555555555554454444
No 175
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=34.85 E-value=2.4e+02 Score=22.57 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 35 ~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+-.++|+.
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 34556677799999999887 677999999999999999993
No 176
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=34.78 E-value=64 Score=25.76 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=24.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l 48 (230)
|++|+||-+|..++ .+ ..|+.+.+.|...|+.+
T Consensus 1 M~ki~Ivy~S~tGn-Te--~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGN-TE--KVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCc-HH--HHHHHHHHHhccCCceE
Confidence 57899999999885 33 46777777777776665
No 177
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=34.78 E-value=60 Score=31.14 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchHHHHHHHHHhc
Q 026977 32 DAAIDLAHELVARRLDLVYGGGS----------IGLMGLVSKAVHHG 68 (230)
Q Consensus 32 ~~A~~LG~~LA~~g~~lVtGGg~----------~GlM~ava~gA~~~ 68 (230)
+.|+.|+..|-++|+.||+||-. .|+.++.++-+++.
T Consensus 328 ~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 328 KNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 34667778888899999999953 58888888877773
No 178
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=34.67 E-value=4.2e+02 Score=25.37 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC-CcchHHHHHHHHHHHcCCCCccccCcEE
Q 026977 98 DMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-GYYNYLLTFIDKAVDDGFIKPSQRNIIV 176 (230)
Q Consensus 98 ~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~-G~~~~l~~~l~~~~~~gfi~~~~~~~i~ 176 (230)
.|..|-.-++.-||.+|.+ ||+.|.=|+. + .+||.+++... +--+.++. -+.+.+-|.++-=..+.+
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeIL---s------~~k~aLivPr~~p~eEQliR-A~Rl~~LGL~dvL~pe~l- 350 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEIL---S------FGKPALIVPRAAPREEQLIR-AQRLEELGLVDVLLPENL- 350 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHHH---h------CCCceEEeccCCCcHHHHHH-HHHHHhcCcceeeCcccC-
Confidence 3445556677888977665 6799977765 3 38999888532 22222222 135777787775555555
Q ss_pred EcCCHHHHHHHHHhhcC
Q 026977 177 SAPNAKELVQKLEEYVP 193 (230)
Q Consensus 177 ~~~d~ee~~~~l~~~~~ 193 (230)
+++.+-++|....+
T Consensus 351 ---t~~~La~al~~~l~ 364 (400)
T COG4671 351 ---TPQNLADALKAALA 364 (400)
T ss_pred ---ChHHHHHHHHhccc
Confidence 47778888876544
No 179
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.56 E-value=4.5e+02 Score=25.73 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHCC-CeEEEcCCCc--chHHHHHHHHHhcCCeEE------EEeCCcccccccCCCCCceEeecCCHHHHH
Q 026977 33 AAIDLAHELVARR-LDLVYGGGSI--GLMGLVSKAVHHGGGNVI------GIIPRTLMNKEITGETVGEVRPVADMHQRK 103 (230)
Q Consensus 33 ~A~~LG~~LA~~g-~~lVtGGg~~--GlM~ava~gA~~~GG~vi------GI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk 103 (230)
...++.++|.+.. -.|+.|+|-. |..+++.+=|-..|-.|+ |++|+. |+.+.-.+=...-...+
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~-------hp~~~G~~G~~~~~~~~ 267 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGT-------HKNSLGMLGMHGRYEAN 267 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCC-------CcccccCCccCCCHHHH
Confidence 3445556666655 4556566542 777777777767777766 333321 22221111011112333
Q ss_pred HHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 026977 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKE 183 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 183 (230)
. .++.||++|+++-.++... .. .+... ..+++++-+|.+.. . +.......+.+..|+.+
T Consensus 268 ~-~~~~aD~vl~vG~~~~~~~---~~-~~~~~-~~~~~~i~id~d~~--~-------------i~~~~~~~~~i~~D~~~ 326 (572)
T PRK08979 268 M-AMHNADLIFGIGVRFDDRT---TN-NLEKY-CPNATILHIDIDPS--S-------------ISKTVRVDIPIVGSADK 326 (572)
T ss_pred H-HHHhCCEEEEEcCCCCccc---cC-chhhc-CCCCeEEEEECCHH--H-------------hCCccCCceEEecCHHH
Confidence 3 4578999999876543322 10 01111 12345776776521 0 01111234666777777
Q ss_pred HHHHHHh
Q 026977 184 LVQKLEE 190 (230)
Q Consensus 184 ~~~~l~~ 190 (230)
+++.|.+
T Consensus 327 ~l~~L~~ 333 (572)
T PRK08979 327 VLDSMLA 333 (572)
T ss_pred HHHHHHH
Confidence 7777655
No 180
>PRK00861 putative lipid kinase; Reviewed
Probab=34.44 E-value=94 Score=27.64 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=23.0
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
.| .|+.-||=||++|+...+. .++.|+.++.
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~-----~~~~~lgviP 88 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALI-----GTDIPLGIIP 88 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHh-----cCCCcEEEEc
Confidence 46 4556899999999987763 2357888874
No 181
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=34.22 E-value=35 Score=30.46 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEE
Q 026977 36 DLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIA 115 (230)
Q Consensus 36 ~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~ 115 (230)
+-.+.|.+.||.|+-=..+ .-.+++.-.+.|..+ |+|-.- |-. ....+ . + ..--+++.+.+|.-|+
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~---D~v~akrL~d~Gcaa--vMPlgs-PIG-Sg~Gi----~--n-~~~l~~i~~~~~vPvI 179 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTD---DPVLAKRLEDAGCAA--VMPLGS-PIG-SGRGI----Q--N-PYNLRIIIERADVPVI 179 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SE--BEEBSS-STT-T---S----S--T-HHHHHHHHHHGSSSBE
T ss_pred HHHHHHHHCCCEEeecCCC---CHHHHHHHHHCCCCE--EEeccc-ccc-cCcCC----C--C-HHHHHHHHHhcCCcEE
Confidence 3455567777777532222 234555555666653 333211 000 00111 0 1 2335567788899999
Q ss_pred ecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 116 LPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 116 lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
+-+|+||.++..+++.+ +---+|+|+
T Consensus 180 vDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 180 VDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp EES---SHHHHHHHHHT------T-SEEEESH
T ss_pred EeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 99999999999999876 667778885
No 182
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=34.14 E-value=1.1e+02 Score=24.69 Aligned_cols=76 Identities=22% Similarity=0.157 Sum_probs=48.8
Q ss_pred HHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcE
Q 026977 63 KAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPV 142 (230)
Q Consensus 63 ~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPi 142 (230)
.++...||.++.+-|....- -..+++.+=-+.|-..+|++|+=--.-++++|+.+.. ..||
T Consensus 59 ~A~~~LGg~~i~~~~~~s~~-----------~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vPV 119 (142)
T PF02729_consen 59 AAANRLGGHVIYLDPSTSSL-----------GKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVPV 119 (142)
T ss_dssp HHHHHTTCEEEEEETTTSST-----------TTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSEE
T ss_pred HhhhcceeEEEEECcccccC-----------cCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCCe
Confidence 45677899999986543210 0123454444577788999999888899999987553 7888
Q ss_pred EEEecCCcchHHHHHH
Q 026977 143 GLLNVDGYYNYLLTFI 158 (230)
Q Consensus 143 vlln~~G~~~~l~~~l 158 (230)
|=... ..+-|--.++
T Consensus 120 INa~~-~~~HPtQaL~ 134 (142)
T PF02729_consen 120 INAGD-DHEHPTQALA 134 (142)
T ss_dssp EEEEE-SSBSHHHHHH
T ss_pred EcCcC-CCCChHHHHH
Confidence 64433 3445544433
No 183
>CHL00175 minD septum-site determining protein; Validated
Probab=34.04 E-value=92 Score=27.20 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=29.6
Q ss_pred ccccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 3 MEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 3 ~~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
-|.|++..+..+.|+|. |...+..... .|..||..||+.|..++
T Consensus 5 ~~~~~~~~~~~~vi~v~-s~KGGvGKTt--~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 5 TEDKEKSATMSRIIVIT-SGKGGVGKTT--TTANLGMSIARLGYRVA 48 (281)
T ss_pred chhhhhcCCCceEEEEE-cCCCCCcHHH--HHHHHHHHHHhCCCeEE
Confidence 35666655555666666 4565655553 68889999999987553
No 184
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=33.95 E-value=1.1e+02 Score=26.71 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
..+.....+.||.+|+++ -+++.. -+..+...-..+.|++++|.+.- + + +.....-+.+..
T Consensus 166 ~~~~~~~~~~aDlllvvG-TSl~V~---pa~~l~~~~~~~~~~v~iN~~~~--~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIG-TSLKVA---PFASLPSRVPSEVPRVLINREPV--G------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEEC-CCCeec---cHHHHHHHHhCCCcEEEEeCCCC--C------------C-CCCCCcCEEEeC
Confidence 455556678899888863 222222 12222211124689999996521 0 0 000112367788
Q ss_pred CHHHHHHHH
Q 026977 180 NAKELVQKL 188 (230)
Q Consensus 180 d~ee~~~~l 188 (230)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888888754
No 185
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=33.94 E-value=3.2e+02 Score=23.82 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=40.9
Q ss_pred HHHHhhcCeEEEecCCc-------ccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEE
Q 026977 104 AEMARHSDCFIALPGGY-------GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIV 176 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~-------GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~ 176 (230)
..++..||++|. |.-. |.-.=++|++. .++||+.-+..+. ..+ +.+.....++
T Consensus 259 ~~~~~~ad~~v~-ps~~~~~~~~E~~~~~~~EA~a------~G~PvI~s~~~~~-~e~------------i~~~~~g~~~ 318 (367)
T cd05844 259 RELMRRARIFLQ-PSVTAPSGDAEGLPVVLLEAQA------SGVPVVATRHGGI-PEA------------VEDGETGLLV 318 (367)
T ss_pred HHHHHhCCEEEE-CcccCCCCCccCCchHHHHHHH------cCCCEEEeCCCCc-hhh------------eecCCeeEEE
Confidence 346788998765 3211 11222555554 3999998776542 211 1122223344
Q ss_pred EcCCHHHHHHHHHhhcCC
Q 026977 177 SAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 177 ~~~d~ee~~~~l~~~~~~ 194 (230)
-.+|++++.+.|.+....
T Consensus 319 ~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 319 PEGDVAALAAALGRLLAD 336 (367)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 456999999999887544
No 186
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.90 E-value=1e+02 Score=23.44 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=4.0
Q ss_pred hcCCeEEE
Q 026977 67 HGGGNVIG 74 (230)
Q Consensus 67 ~~GG~viG 74 (230)
+.|..+++
T Consensus 108 ~~g~~~v~ 115 (140)
T TIGR01753 108 EAGATIIA 115 (140)
T ss_pred HCCCEEec
Confidence 34555544
No 187
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.60 E-value=94 Score=28.43 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=65.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGE 92 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e 92 (230)
|++|+|+.-. . .+...+.+.++.++|.++|+.++..--. +... +. +... ...-+..++.
T Consensus 1 m~~igiv~n~--~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~----------~~~~-----~~-~~~~--~~~~~~~~~~ 59 (305)
T PRK02649 1 MPKAGIIYND--G-KPLAVRTAEELQDKLEAAGWEVVRASSS----------GGIL-----GY-ANPD--QPVCHTGIDQ 59 (305)
T ss_pred CCEEEEEEcC--C-CHHHHHHHHHHHHHHHHCCCEEEEecch----------hhhc-----Cc-cccc--cccccccccc
Confidence 4679999532 2 3566688999999999999998764321 1111 10 0000 0000000000
Q ss_pred EeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcC
Q 026977 93 VRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NYLLTFIDKAVDDG 165 (230)
Q Consensus 93 ~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~--G~~-----~~l~~~l~~~~~~g 165 (230)
..+ ..+.+.+|.+|+ -||=||+-..+..+ ...++||+=+|.. ||. +.+.+.|+++.+..
T Consensus 60 ----~~~----~~~~~~~Dlvi~-iGGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 60 ----LVP----PGFDSSMKFAIV-LGGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred ----cCh----hhcccCcCEEEE-EeCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCC
Confidence 000 112235785555 57889988665443 3468899888864 666 56666666665544
Q ss_pred C
Q 026977 166 F 166 (230)
Q Consensus 166 f 166 (230)
|
T Consensus 126 y 126 (305)
T PRK02649 126 Y 126 (305)
T ss_pred c
Confidence 3
No 188
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=33.56 E-value=3.6e+02 Score=24.22 Aligned_cols=93 Identities=16% Similarity=0.266 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCeEE-EcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCe
Q 026977 34 AIDLAHELVARRLDLV-YGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDC 112 (230)
Q Consensus 34 A~~LG~~LA~~g~~lV-tGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa 112 (230)
..+-.+.|.+.|+.++ |-.-. + ..++...+.|-..+ .|-. .+-. ....+ .+ .+.-+.+.+..+.
T Consensus 112 tv~aa~~L~~~Gf~vlpyc~dd--~--~~ar~l~~~G~~~v--mPlg-~pIG-sg~Gi------~~-~~~I~~I~e~~~v 176 (248)
T cd04728 112 TLKAAEILVKEGFTVLPYCTDD--P--VLAKRLEDAGCAAV--MPLG-SPIG-SGQGL------LN-PYNLRIIIERADV 176 (248)
T ss_pred HHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CCCC-cCCC-CCCCC------CC-HHHHHHHHHhCCC
Confidence 4445666778888888 65544 2 23444445565544 3311 0111 01111 11 3333456666889
Q ss_pred EEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 113 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 113 ~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
-|+..||+||.+++..++.+ +---+++|+
T Consensus 177 pVI~egGI~tpeda~~Amel------GAdgVlV~S 205 (248)
T cd04728 177 PVIVDAGIGTPSDAAQAMEL------GADAVLLNT 205 (248)
T ss_pred cEEEeCCCCCHHHHHHHHHc------CCCEEEECh
Confidence 99999999999999998864 444455554
No 189
>PRK13054 lipid kinase; Reviewed
Probab=33.47 E-value=2.5e+02 Score=25.01 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.1
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
..| .|+.-||=||+.|+...+.-.. ..++.|+.++.
T Consensus 56 ~~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgiiP 91 (300)
T PRK13054 56 GVA-TVIAGGGDGTINEVATALAQLE-GDARPALGILP 91 (300)
T ss_pred CCC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEEe
Confidence 345 5668899999999997773211 12245788874
No 190
>PRK06703 flavodoxin; Provisional
Probab=33.41 E-value=2.4e+02 Score=22.17 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l 48 (230)
|++|.|+.+|..++ -.+.|+.+++.|...|+.+
T Consensus 1 mmkv~IiY~S~tGn---T~~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGN---TEDIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCch---HHHHHHHHHHHHHhcCCce
Confidence 35666666777663 2245667777666666543
No 191
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=33.24 E-value=33 Score=30.78 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCeEEEcCCCcchHHHHHHHHHh
Q 026977 36 DLAHELVARRLDLVYGGGSIGLMGLVSKAVHH 67 (230)
Q Consensus 36 ~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~ 67 (230)
+|+|.|+.+.+.||.||| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378889999999999887 677777777665
No 192
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=33.21 E-value=74 Score=28.51 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=38.4
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCe--EEEEe
Q 026977 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGN--VIGII 76 (230)
Q Consensus 15 ~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~--viGI~ 76 (230)
....|-+|.. |+ ..++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+-
T Consensus 163 v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 163 VNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp EEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred EEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 4455555543 22 56778888888899999999444 5566677788888887 99984
No 193
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.99 E-value=2.6e+02 Score=22.48 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=35.5
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 34 AIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 34 A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
..-+...|-.+||.+++-|-. =-.+.+.+.|.+.+-.+||+.
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 345566777899999999987 778999999999999999993
No 194
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.93 E-value=3e+02 Score=24.45 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHH-----HHHHHHHHcC
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLL-----TFIDKAVDDG 165 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~-----~~l~~~~~~g 165 (230)
|++++++.+.-.+-...+.|++++ +||+++. +|++.+.+.|
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aG 117 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAG 117 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcC
Confidence 466666666433323457899877 4676544 4677776655
No 195
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.82 E-value=2.3e+02 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=19.4
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
.+.++.|| . |-|=-+++-+...+-.++||
T Consensus 70 Dlvi~iGG-D-GTlL~aar~~~~~~iPilGI 98 (305)
T PRK02649 70 KFAIVLGG-D-GTVLSAARQLAPCGIPLLTI 98 (305)
T ss_pred CEEEEEeC-c-HHHHHHHHHhcCCCCcEEEE
Confidence 56666655 5 77766666666666677887
No 196
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=32.78 E-value=45 Score=30.37 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHh
Q 026977 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHH 67 (230)
Q Consensus 35 ~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~ 67 (230)
++|++.|..+.+.||-+|| |.=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4689999999999999887 677777777665
No 197
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.48 E-value=86 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=17.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|+|+|.|.|..... .++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 57999997775322 24456666666777664
No 198
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=32.40 E-value=2.1e+02 Score=24.02 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=44.2
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHH-cCCCCCcEEEEecCCcc------hHHHHHHH-HHHHcCCCCccccCcEE-
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYY------NYLLTFID-KAVDDGFIKPSQRNIIV- 176 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~q-lg~~~kPivlln~~G~~------~~l~~~l~-~~~~~gfi~~~~~~~i~- 176 (230)
+.+...+.|+|+||. |...+++.+.-.. ..+.-+.|.+++.+.+| +.-..+++ ++.+..-|++.....+.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 356688999999986 4456777765543 12223567777777666 12223332 23332223333222222
Q ss_pred EcCCHHHHHHHHHhh
Q 026977 177 SAPNAKELVQKLEEY 191 (230)
Q Consensus 177 ~~~d~ee~~~~l~~~ 191 (230)
-.+|+++..+.+.+.
T Consensus 96 ~~~~~~~~~~~y~~~ 110 (199)
T PF01182_consen 96 EADDPEEAAERYEQE 110 (199)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 135677777776653
No 199
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=32.26 E-value=92 Score=27.59 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=26.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 15 ~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
+|+|.+|......+.-...++.+.+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 57776655544456666899999999999999863
No 200
>PRK06703 flavodoxin; Provisional
Probab=32.18 E-value=1.1e+02 Score=24.07 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=7.0
Q ss_pred HHHHHHhcCCeEEE
Q 026977 61 VSKAVHHGGGNVIG 74 (230)
Q Consensus 61 va~gA~~~GG~viG 74 (230)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44444445666554
No 201
>PRK10537 voltage-gated potassium channel; Provisional
Probab=31.99 E-value=3.8e+02 Score=25.35 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=51.7
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEee--cCCHHHHHHHHHhhcCeEEEecCCcc
Q 026977 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRP--VADMHQRKAEMARHSDCFIALPGGYG 121 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~--~~~m~~Rk~~m~~~sDa~I~lPGG~G 121 (230)
++|.+|+|.|+.| ..+++.-.+.|-.++-|.++.. .+...+.+ +.+. .++...=++.-++.|+++|++..--
T Consensus 240 k~HvII~G~g~lg--~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~-~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD- 313 (393)
T PRK10537 240 KDHFIICGHSPLA--INTYLGLRQRGQAVTVIVPLGL--EHRLPDDA-DLIPGDSSDSAVLKKAGAARARAILALRDND- 313 (393)
T ss_pred CCeEEEECCChHH--HHHHHHHHHCCCCEEEEECchh--hhhccCCC-cEEEeCCCCHHHHHhcCcccCCEEEEcCCCh-
Confidence 6999999998754 3366665666777777765421 11111222 2332 2333333444567899999987542
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEE
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLL 145 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivll 145 (230)
-+-++.+++.++++. +.+++..
T Consensus 314 -~~Nl~ivL~ar~l~p-~~kIIa~ 335 (393)
T PRK10537 314 -ADNAFVVLAAKEMSS-DVKTVAA 335 (393)
T ss_pred -HHHHHHHHHHHHhCC-CCcEEEE
Confidence 223444555555553 3455543
No 202
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.86 E-value=95 Score=27.41 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTF 157 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~ 157 (230)
||+.+++......-.-...||+|+ |||++++.+
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888877544322246899998 699998764
No 203
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=31.86 E-value=1.3e+02 Score=26.75 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=36.2
Q ss_pred eEEEecCCcccHHHHHHHHHHHHcCC-CCCcEEEEe---cCCcchHHHHHHHHHHHcCCCCccccCcEE--EcCCHHHHH
Q 026977 112 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNYLLTFIDKAVDDGFIKPSQRNIIV--SAPNAKELV 185 (230)
Q Consensus 112 a~I~lPGG~GTL~El~~~~t~~qlg~-~~kPivlln---~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~--~~~d~ee~~ 185 (230)
|+|+|-||.||= +|. ..||.+=+. ..-+.+...+.+..+... .-.......++ ..++.++..
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~-~~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEI-DLYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHH-hhcCCCCCEEEEcCchhHHHHH
Confidence 689999999992 242 356665444 334666666655543220 00001112222 224556777
Q ss_pred HHHHhhc
Q 026977 186 QKLEEYV 192 (230)
Q Consensus 186 ~~l~~~~ 192 (230)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8887754
No 204
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=31.69 E-value=1.2e+02 Score=27.96 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=36.0
Q ss_pred hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 026977 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNYLLTFIDK 160 (230)
Q Consensus 108 ~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~-----~G~~~~l~~~l~~ 160 (230)
+..|+|||.=| .-||+|-...+.++- ...+|||||-+. .-..|...++...
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 55799998875 899999998887643 224899999863 2245666665554
No 205
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=31.61 E-value=81 Score=28.64 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
++|+|.+|......+.-...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 468887766655566666899999999999999885
No 206
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=31.60 E-value=1.2e+02 Score=29.04 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=36.2
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNYLLTFIDK 160 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~-----~G~~~~l~~~l~~ 160 (230)
.|+|||.=| .-||+|-..++.++- ..+|||||.+. .-..|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799998875 899999999988754 45899999863 2345666666654
No 207
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=31.57 E-value=79 Score=27.84 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
++|+|.||+.......-.+.++.+-++|.+.||.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 3678777665443344346789999999999999854
No 208
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=31.46 E-value=1.5e+02 Score=24.75 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=36.1
Q ss_pred HHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 026977 106 MARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKE 183 (230)
Q Consensus 106 m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 183 (230)
+...||++|.-. .|.|+- +.|++.. ++|++..+..+ ...+ +.+.....+.-.+|+++
T Consensus 260 ~~~~~d~~i~ps~~e~~~~~--~~Ea~~~------G~PvI~~~~~~-~~e~------------i~~~~~g~~~~~~~~~~ 318 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPNV--LLEAMAL------GTPVVATDCPG-PREI------------LEDGENGLLVPVGDEAA 318 (353)
T ss_pred HHHhCCEEEeCcccCCCCcH--HHHHHHh------CCCEEEcCCCC-hHHH------------hcCCCceEEECCCCHHH
Confidence 567899887642 234432 4555543 99999877653 2221 22223344555567777
Q ss_pred H---HHHHHhh
Q 026977 184 L---VQKLEEY 191 (230)
Q Consensus 184 ~---~~~l~~~ 191 (230)
+ ++.+...
T Consensus 319 ~~~~~~~i~~~ 329 (353)
T cd03811 319 LAAAALALLDL 329 (353)
T ss_pred HHHHHHHHHhc
Confidence 7 4555443
No 209
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=31.38 E-value=75 Score=28.96 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
++|+|.+|......+.-...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 468887766655567777899999999999999986
No 210
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=31.35 E-value=1.9e+02 Score=24.61 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=41.6
Q ss_pred HHHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 103 KAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 103 k~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
..-+...||++|.-. .|+|+- +.|++. .++|++.-+..+ +..++ .+ . ..+.+.++
T Consensus 275 ~~~~~~~adv~v~ps~~e~~~~~--~~Eama------~G~PvI~~~~~~-~~~~~---~~--~---------~~~~~~~~ 331 (375)
T cd03821 275 KAAALADADLFVLPSHSENFGIV--VAEALA------CGTPVVTTDKVP-WQELI---EY--G---------CGWVVDDD 331 (375)
T ss_pred HHHHHhhCCEEEeccccCCCCcH--HHHHHh------cCCCEEEcCCCC-HHHHh---hc--C---------ceEEeCCC
Confidence 344567799877643 455543 566664 489999877543 23222 12 1 23445567
Q ss_pred HHHHHHHHHhhcCC
Q 026977 181 AKELVQKLEEYVPV 194 (230)
Q Consensus 181 ~ee~~~~l~~~~~~ 194 (230)
++++.+.|.+....
T Consensus 332 ~~~~~~~i~~l~~~ 345 (375)
T cd03821 332 VDALAAALRRALEL 345 (375)
T ss_pred hHHHHHHHHHHHhC
Confidence 78888888886544
No 211
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=31.28 E-value=1.6e+02 Score=25.83 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=69.7
Q ss_pred cccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcchHHHHHHHHHhcCCeEEEEeCCccc
Q 026977 4 EGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL--VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLM 81 (230)
Q Consensus 4 ~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l--VtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~ 81 (230)
.--.++..+.+.|.|.-+-+. +.|..+.+.|.+.|+.. ||==.+ .--+++..-+.+.+.-.||-= +.+.
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~-------e~a~~~a~Ali~gGi~~IEITl~sp-~a~e~I~~l~~~~p~~lIGAG-TVL~ 74 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDV-------EEALPLAKALIEGGIPAIEITLRTP-AALEAIRALAKEFPEALIGAG-TVLN 74 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCH-------HHHHHHHHHHHHcCCCeEEEecCCC-CHHHHHHHHHHhCcccEEccc-cccC
Confidence 333455666778999864332 56778888888888877 343344 566666666666666666651 1121
Q ss_pred ccc--cCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHH
Q 026977 82 NKE--ITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITW 132 (230)
Q Consensus 82 ~~e--~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~ 132 (230)
+.. ....-=.++++.++++..-.......+ +..+|| .-|..|++.++.+
T Consensus 75 ~~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~~-ip~~PG-~~TptEi~~Ale~ 125 (211)
T COG0800 75 PEQARQAIAAGAQFIVSPGLNPEVAKAANRYG-IPYIPG-VATPTEIMAALEL 125 (211)
T ss_pred HHHHHHHHHcCCCEEECCCCCHHHHHHHHhCC-CcccCC-CCCHHHHHHHHHc
Confidence 111 001111346666777644444433333 666775 8899999999865
No 212
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=31.24 E-value=1.3e+02 Score=26.36 Aligned_cols=70 Identities=6% Similarity=0.058 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHc-CCCCCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDG-YYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~ql-g~~~kPivlln~~G-~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
.+|....++.||.+|++ ||=-.+.-+..+... ..++.|++++|... .++. ..-+.+
T Consensus 169 ~~~~~~~~~~aDl~lvi----GTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVM----GSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEe----CcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 46666677889988885 332222222222221 24689999999742 2221 123688
Q ss_pred cCCHHHHHHHHHhh
Q 026977 178 APNAKELVQKLEEY 191 (230)
Q Consensus 178 ~~d~ee~~~~l~~~ 191 (230)
..+.+|++..|.++
T Consensus 227 ~~~~~~~l~~l~~~ 240 (244)
T PRK14138 227 NMDVVEFANRVMSE 240 (244)
T ss_pred eCCHHHHHHHHHHH
Confidence 89999999999874
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=31.09 E-value=95 Score=26.56 Aligned_cols=106 Identities=19% Similarity=0.293 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHC-C----CeEEEcCCCcc---hHHHHHHHHHhc--CCeEEEEeCCcccccccCCCCCceEeecCCHHH
Q 026977 32 DAAIDLAHELVAR-R----LDLVYGGGSIG---LMGLVSKAVHHG--GGNVIGIIPRTLMNKEITGETVGEVRPVADMHQ 101 (230)
Q Consensus 32 ~~A~~LG~~LA~~-g----~~lVtGGg~~G---lM~ava~gA~~~--GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~ 101 (230)
+.|....+.+|++ + -..+||+..+| |+.|++..+.+. +.+|+-+....+.. + +.+.+..... +
T Consensus 17 ~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~-----~~~~~~~~~~-~ 89 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-E-----FADALRDGEI-E 89 (219)
T ss_dssp HHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-H-----HHHHHHTTSH-H
T ss_pred HHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-H-----HHHHHHcccc-h
Confidence 4455566666664 2 25788876656 888888888764 44555442222110 0 0000111111 1
Q ss_pred HHHHHHhhcCeEEE-----ecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 102 RKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 102 Rk~~m~~~sDa~I~-----lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
.-.--.+.+|++++ +.|.-.|-+|++..+.... .++|++++.-
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts 137 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTS 137 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEE
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEe
Confidence 11122457887776 4565667889998875433 4678888763
No 214
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=31.07 E-value=5.1e+02 Score=25.29 Aligned_cols=130 Identities=10% Similarity=0.052 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHCC-CeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc--ccccccCCCCCceEeecCCHHHHHHHHHhh
Q 026977 33 AAIDLAHELVARR-LDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT--LMNKEITGETVGEVRPVADMHQRKAEMARH 109 (230)
Q Consensus 33 ~A~~LG~~LA~~g-~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~--~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~ 109 (230)
...++.+.|.+.. =.|+.|+|-.+.-+++.+=|-..|-.|+-- +.. ..|. .|+.+.-..=.......+ ..++.
T Consensus 190 ~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lae~l~~PV~tt-~~gkg~~~~--~hp~~~G~~G~~~~~~~~-~~~~~ 265 (574)
T PRK09124 190 ELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHA-LRGKEHVEY--DNPYDVGMTGLIGFSSGY-HAMMN 265 (574)
T ss_pred HHHHHHHHHHcCCCCEEEECcChHhHHHHHHHHHHHhCCceEEc-ccccccCCC--CCcccccCCccCCCHHHH-HHHHh
Confidence 3455566777644 444556543344455544444456655521 111 1111 111111111001112223 34578
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLE 189 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~ 189 (230)
||.+|+++-..... .+ + ....+++-++.+.. . +.......+.+..|+.++++.|.
T Consensus 266 aDlvl~lG~~~~~~-------~~--~-~~~~~ii~id~d~~--~-------------~~~~~~~~~~i~~D~~~~l~~L~ 320 (574)
T PRK09124 266 CDTLLMLGTDFPYR-------QF--Y-PTDAKIIQIDINPG--S-------------LGRRSPVDLGLVGDVKATLAALL 320 (574)
T ss_pred CCEEEEECCCCCcc-------cc--c-CCCCcEEEeeCCHH--H-------------hCCCCCCCeEEEccHHHHHHHHH
Confidence 99999998765421 11 1 12356777776521 0 11122234677888888888886
Q ss_pred hh
Q 026977 190 EY 191 (230)
Q Consensus 190 ~~ 191 (230)
+.
T Consensus 321 ~~ 322 (574)
T PRK09124 321 PL 322 (574)
T ss_pred Hh
Confidence 53
No 215
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=30.97 E-value=66 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=26.8
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 15 ~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
+|+|+||......+.-...++.+-+.|.++||.++.-...
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeec
Confidence 3666665554333333478999999999999998554443
No 216
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.78 E-value=2.9e+02 Score=25.02 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCC--cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLLNVDG--YYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEE 190 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivlln~~G--~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~ 190 (230)
|++..++.+....-.-.+.|++++..-+ |+.++..|++.+.+.|. +-+.+.|=|-|--+.+..
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELLK 141 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHHH
Confidence 5666666654433223467999984211 34456667777777663 456677766665555444
No 217
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.77 E-value=5.4e+02 Score=25.48 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHCCCeE-EEcCCCc--chHHHHHHHHHhcCCeEEEEeC-CcccccccCCCCCceEeecCCHHHHHHHHHh
Q 026977 33 AAIDLAHELVARRLDL-VYGGGSI--GLMGLVSKAVHHGGGNVIGIIP-RTLMNKEITGETVGEVRPVADMHQRKAEMAR 108 (230)
Q Consensus 33 ~A~~LG~~LA~~g~~l-VtGGg~~--GlM~ava~gA~~~GG~viGI~P-~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~ 108 (230)
...++.+.|.+....+ +.|+|-. |...++.+=|-+.|-.|+-=.. ....|. .|+.+.-.+-...-...+. .++
T Consensus 213 ~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~--~hpl~~G~~G~~g~~~~~~-~l~ 289 (616)
T PRK07418 213 QINAALKLIEEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDE--HHPLSVGMLGMHGTAYANF-AVT 289 (616)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCC--CCcccccCCCCCCCHHHHH-HHH
Confidence 4556667777755555 4455432 5566666656566766652110 011111 1111111110111123344 457
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKL 188 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l 188 (230)
.||.+|+++--++.... - .+... ..+.+++-++.+.. .+ .......+.+..|+.++++.|
T Consensus 290 ~aDlvL~vG~~~~~~~~---~-~~~~~-~~~~~~i~id~d~~---------~i------g~~~~~~~~i~~D~~~~l~~L 349 (616)
T PRK07418 290 ECDLLIAVGARFDDRVT---G-KLDEF-ASRAKVIHIDIDPA---------EV------GKNRRPDVPIVGDVRKVLVKL 349 (616)
T ss_pred hCCEEEEEcCCCCcccc---C-Chhhc-CCCCeEEEEeCCHH---------Hh------CCccCCCeEEecCHHHHHHHH
Confidence 89999999866554321 0 01111 12456777776520 11 111223567778888888777
Q ss_pred Hhhc
Q 026977 189 EEYV 192 (230)
Q Consensus 189 ~~~~ 192 (230)
.+..
T Consensus 350 ~~~l 353 (616)
T PRK07418 350 LERS 353 (616)
T ss_pred HHhh
Confidence 6644
No 218
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.76 E-value=1.6e+02 Score=25.75 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=40.0
Q ss_pred HHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 026977 105 EMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAK 182 (230)
Q Consensus 105 ~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 182 (230)
-+...||++|.-. .|.|.- +.|++. .++|++..+..+. ..+ +. +.....+.-.+|++
T Consensus 266 ~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~~-~e~-------i~-----~~~~G~~~~~~~~~ 324 (371)
T cd04962 266 ELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGGI-PEV-------VK-----HGETGFLVDVGDVE 324 (371)
T ss_pred HHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCCc-hhh-------hc-----CCCceEEcCCCCHH
Confidence 4567899887642 344522 455554 4899999876543 222 11 11223333345899
Q ss_pred HHHHHHHhhcC
Q 026977 183 ELVQKLEEYVP 193 (230)
Q Consensus 183 e~~~~l~~~~~ 193 (230)
++.+.+.+...
T Consensus 325 ~l~~~i~~l~~ 335 (371)
T cd04962 325 AMAEYALSLLE 335 (371)
T ss_pred HHHHHHHHHHh
Confidence 99988887654
No 219
>PRK08264 short chain dehydrogenase; Validated
Probab=30.71 E-value=3.1e+02 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-eEEEE
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGI 75 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI 75 (230)
+..||+||.. |+=.++++...+.|- +|+.+
T Consensus 7 ~~vlItGgsg-~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 7 KVVLVTGANR-GIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCcccEEEE
Confidence 3456666665 666666666666665 55544
No 220
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=30.60 E-value=51 Score=31.09 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=18.3
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCeEEEEeC
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG~viGI~P 77 (230)
.||.|||+.|++.|++ |.++|-+|+=|-+
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-S
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEEC
Confidence 4799999989887664 5566778777744
No 221
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.54 E-value=2.7e+02 Score=23.83 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHhhcCeEEEec---CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 104 AEMARHSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 104 ~~m~~~sDa~I~lP---GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
..+...||++|... .|+|.- ++|++. .++||+.-|..|. .. ++.++ . .-+++++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~--~lEAma------~G~PvI~~~~~~~-~e-------~i~~~-----~--~g~l~~~ 294 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLV--MIEAMA------CGTPVIAFRRGAV-PE-------VVEDG-----V--TGFLVDS 294 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchH--HHHHHh------cCCCEEEeCCCCc-hh-------heeCC-----C--cEEEeCC
Confidence 34568899888742 466642 566665 3899999877543 22 22111 1 1233455
Q ss_pred HHHHHHHHHhh
Q 026977 181 AKELVQKLEEY 191 (230)
Q Consensus 181 ~ee~~~~l~~~ 191 (230)
++++.+.|.+.
T Consensus 295 ~~~l~~~l~~l 305 (335)
T cd03802 295 VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHHHH
Confidence 88888888776
No 222
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=30.41 E-value=1.7e+02 Score=26.60 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccC-CCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccH
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEIT-GETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTL 123 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~-~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL 123 (230)
...+|.|+|+.|++ +..-|+..|.+++.+........+.. .-..+.++...+- ++-..+....|.+|=.-|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 45667777766666 45557777888877643321111110 1112223222221 11111112358777777766677
Q ss_pred HHHHHHH
Q 026977 124 EELLEVI 130 (230)
Q Consensus 124 ~El~~~~ 130 (230)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 7766544
No 223
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=30.35 E-value=3.1e+02 Score=24.72 Aligned_cols=73 Identities=18% Similarity=0.382 Sum_probs=40.6
Q ss_pred HHHHHHHCCCeEEE---cCCC-cchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCe
Q 026977 37 LAHELVARRLDLVY---GGGS-IGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDC 112 (230)
Q Consensus 37 LG~~LA~~g~~lVt---GGg~-~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa 112 (230)
+-+.|-..+..+|+ |||. +|.--.+++-+.+.|-.+++|.|..+.. |... ....-...-..|.+.+|+
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~-Eg~~-------~~~nA~~~l~~L~~~~d~ 149 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSF-EGKK-------RMRQAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccc-cchh-------HHHHHHHHHHHHHHhCCE
Confidence 33444445555665 4443 4666667788888888888886533211 1000 000112344556688898
Q ss_pred EEEec
Q 026977 113 FIALP 117 (230)
Q Consensus 113 ~I~lP 117 (230)
+|+++
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 88886
No 224
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.20 E-value=2e+02 Score=25.47 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLD----------------LVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~----------------lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
|+++||. + +.-.+.+.++-++|.++|+. +|+=||. |-|--+++.+ +-.++||-
T Consensus 1 m~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIFY--R----EEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEEe--C----ccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 4677772 2 22446777888888877643 5555666 7776655554 67788884
No 225
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=30.17 E-value=4.5e+02 Score=24.36 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=40.9
Q ss_pred cCeEEE-ecCCcccHHHHHHHHHHHHcCC-CCCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 026977 110 SDCFIA-LPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVDG-YYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQ 186 (230)
Q Consensus 110 sDa~I~-lPGG~GTL~El~~~~t~~qlg~-~~kPivlln~~G-~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~ 186 (230)
.|++++ ++||+.-.+++.+.+.-..-.. ++||+++ ...| -.+.... .+.+.|+ .+.+++|++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv-~~~g~~~~~~~~---~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVV-RLEGTNVEEGKK---ILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EeCCccHHHHHH---HHHHcCC-------CccccCCHHHHHH
Confidence 366665 5788887788877765432221 2489955 3334 2233332 2333332 2568899999998
Q ss_pred HHHh
Q 026977 187 KLEE 190 (230)
Q Consensus 187 ~l~~ 190 (230)
...+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 8765
No 226
>PLN02271 serine hydroxymethyltransferase
Probab=30.13 E-value=1e+02 Score=30.93 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchHHHHHHHHHhcCCeE
Q 026977 32 DAAIDLAHELVARRLDLVYGGGS----------IGLMGLVSKAVHHGGGNV 72 (230)
Q Consensus 32 ~~A~~LG~~LA~~g~~lVtGGg~----------~GlM~ava~gA~~~GG~v 72 (230)
+.|+.|++.|.++|+.||+||-. .|+.+..+..+++.-|.+
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~ 492 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHIT 492 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeE
Confidence 34677888888999999998843 366777777777754433
No 227
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=30.12 E-value=1e+02 Score=23.19 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHC----CCeEE---EcCCC-cchHHHHHHHHHhcC
Q 026977 31 SDAAIDLAHELVAR----RLDLV---YGGGS-IGLMGLVSKAVHHGG 69 (230)
Q Consensus 31 ~~~A~~LG~~LA~~----g~~lV---tGGg~-~GlM~ava~gA~~~G 69 (230)
...|+.+|+.||++ |+.-+ -|+.. .|-+.|+++++.++|
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 37788999998873 33222 23333 489999999999876
No 228
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=30.11 E-value=3.5e+02 Score=23.04 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCc
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~ 91 (230)
+.+++.|.|+++ -....+.+.|+++|+.|+.-+...---....+...+.++++..+.-+...+.+
T Consensus 9 ~~k~vlVtGas~--------giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~------- 73 (278)
T PRK08277 9 KGKVAVITGGGG--------VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKES------- 73 (278)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH-------
Q ss_pred eEeecCCHHHHHHHHHhhcCeEEEecC
Q 026977 92 EVRPVADMHQRKAEMARHSDCFIALPG 118 (230)
Q Consensus 92 e~i~~~~m~~Rk~~m~~~sDa~I~lPG 118 (230)
...+.+.-.......|++|-..|
T Consensus 74 ----v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 74 ----LEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred ----HHHHHHHHHHHcCCCCEEEECCC
No 229
>PRK13337 putative lipid kinase; Reviewed
Probab=30.07 E-value=2.4e+02 Score=25.10 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=23.3
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
.| .|+.-||=||+.|+...+.- . .+..|+.++.
T Consensus 58 ~d-~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgiiP 90 (304)
T PRK13337 58 FD-LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGIIP 90 (304)
T ss_pred CC-EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEEC
Confidence 45 57788999999999977631 1 1245888874
No 230
>PRK09271 flavodoxin; Provisional
Probab=29.91 E-value=95 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l 48 (230)
|+|.|+.+|..++ -.+.|+.+++.|.+.|+.+
T Consensus 1 mkv~IvY~S~tGn---Te~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 1 MRILLAYASLSGN---TREVAREIEERCEEAGHEV 32 (160)
T ss_pred CeEEEEEEcCCch---HHHHHHHHHHHHHhCCCee
Confidence 3566776777764 2356777777776666654
No 231
>PLN02740 Alcohol dehydrogenase-like
Probab=29.88 E-value=1.4e+02 Score=27.28 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-eEEEEeCCcccccccCC-CCCceEeecC----CHHHHHHHHHh-hcCeEEEec
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITG-ETVGEVRPVA----DMHQRKAEMAR-HSDCFIALP 117 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI~P~~~~~~e~~~-~~~~e~i~~~----~m~~Rk~~m~~-~sDa~I~lP 117 (230)
...+|+|+|+.|++ +..-|+..|. +|+++..... ..+... -..+.++... ++.++-..+.. ..|+++=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 46778988776666 4555777787 5888743221 111110 1112233222 13333222222 368888788
Q ss_pred CCcccHHHHHHHH
Q 026977 118 GGYGTLEELLEVI 130 (230)
Q Consensus 118 GG~GTL~El~~~~ 130 (230)
|+..++.+.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 8777888776554
No 232
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.84 E-value=2.3e+02 Score=24.43 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=62.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccc--cCCC
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL--VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE--ITGE 88 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l--VtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e--~~~~ 88 (230)
.+.|.|+=+.. .+.+.++++.|.+.|+.+ ||=-.+ +..+++.+-..+.+...+|.=. .+.+.+ ....
T Consensus 8 ~~liaVlr~~~-------~e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT-Vl~~~~a~~a~~ 78 (204)
T TIGR01182 8 AKIVPVIRIDD-------VDDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT-VLNPEQLRQAVD 78 (204)
T ss_pred CCEEEEEecCC-------HHHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe-CCCHHHHHHHHH
Confidence 34677764321 256778888899988877 343445 7777777666666667788721 111111 0001
Q ss_pred CCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHH
Q 026977 89 TVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITW 132 (230)
Q Consensus 89 ~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~ 132 (230)
-=.+.++.+++.. ..+-......+..+| |.-|..|+..++.+
T Consensus 79 aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~~ 120 (204)
T TIGR01182 79 AGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALEL 120 (204)
T ss_pred cCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHHC
Confidence 1124556666532 222122223467788 78899999999854
No 233
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.80 E-value=3e+02 Score=25.17 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=37.8
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE---------------------------------------EEcC
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL---------------------------------------VYGG 52 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l---------------------------------------VtGG 52 (230)
++++|+|+.-. . .+...+.+.++.++|.++|+.+ |+=|
T Consensus 4 ~~~~I~iv~~~--~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 4 ASRRVLLVAHT--G-RDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLG 80 (306)
T ss_pred CccEEEEEecC--C-CHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEc
Confidence 45679998532 2 3455577788888776655433 3335
Q ss_pred CCcchHHHHHHHHHhcCCeEEEE
Q 026977 53 GSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 53 g~~GlM~ava~gA~~~GG~viGI 75 (230)
|. |-|=.+++-+...+-.++||
T Consensus 81 GD-GT~L~aar~~~~~~~PilGI 102 (306)
T PRK03372 81 GD-GTILRAAELARAADVPVLGV 102 (306)
T ss_pred CC-HHHHHHHHHhccCCCcEEEE
Confidence 55 76666666666666678887
No 234
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=29.75 E-value=48 Score=24.27 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHcCCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 026977 133 AQLGIHDKPVGLLNVDGYYNYLLTFIDK-AVDDGFIKPSQRNIIVSAPNAKELVQKLEEY 191 (230)
Q Consensus 133 ~qlg~~~kPivlln~~G~~~~l~~~l~~-~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 191 (230)
...+.+-+|++.++.+|.++.+++-++. +.....+.-.... ...+|.+++.+.|.+.
T Consensus 10 r~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 10 RKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEK 67 (84)
T ss_dssp HHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHH
Confidence 3444557999999999999999998875 4444444322222 1233456666666654
No 235
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=29.65 E-value=4e+02 Score=23.60 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=42.0
Q ss_pred HHHhhcCeEEEe--cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 026977 105 EMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAK 182 (230)
Q Consensus 105 ~m~~~sDa~I~l--PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~e 182 (230)
.+...||++|.. ..|+|.. +.|++. .++||+.-+..| ...++ .+ .....+.-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~~--~lEAma------~G~Pvv~s~~~g-~~e~i-------~~-----~~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISNT--ILEAMA------SGLPVIATAVGG-NPELV-------QH-----GVTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCchH--HHHHHH------cCCCEEEcCCCC-cHHHh-------cC-----CCceEEeCCCCHH
Confidence 456889987753 2444443 556664 389999877654 23222 12 2233444468999
Q ss_pred HHHHHHHhhcC
Q 026977 183 ELVQKLEEYVP 193 (230)
Q Consensus 183 e~~~~l~~~~~ 193 (230)
++.+.|.+...
T Consensus 327 ~la~~i~~l~~ 337 (374)
T TIGR03088 327 ALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 236
>PLN02494 adenosylhomocysteinase
Probab=29.59 E-value=2e+02 Score=28.25 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccH-
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTL- 123 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL- 123 (230)
.-.+|.|.|+.|. .+++-++..|.+|+.+-.......+.....+. +.++.+ .+..+|.||..+|..+.+
T Consensus 255 KtVvViGyG~IGr--~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~leE----al~~ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 255 KVAVICGYGDVGK--GCAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLED----VVSEADIFVTTTGNKDIIM 324 (477)
T ss_pred CEEEEECCCHHHH--HHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHHH----HHhhCCEEEECCCCccchH
Confidence 4456888887774 45566677788888773322110011111111 113422 356799999988877765
Q ss_pred HHHHHH
Q 026977 124 EELLEV 129 (230)
Q Consensus 124 ~El~~~ 129 (230)
.+.+..
T Consensus 325 ~e~L~~ 330 (477)
T PLN02494 325 VDHMRK 330 (477)
T ss_pred HHHHhc
Confidence 444433
No 237
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=29.58 E-value=96 Score=27.81 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHc-CCCCCcEEEEecCCc-chHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGY-YNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~ql-g~~~kPivlln~~G~-~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
..|....++.+|.+|+ +||--.+.-++.+... ..++.|++++|.+.. ++. . --+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~----------------~--~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP----------------L--LTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc----------------c--eeEEE
Confidence 4556666788998888 5665554433332222 245779999997531 111 0 13678
Q ss_pred cCCHHHHHHHHHhhcCC
Q 026977 178 APNAKELVQKLEEYVPV 194 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~ 194 (230)
..+..|++..|.+....
T Consensus 263 ~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 263 EASCAQALAALVARLGL 279 (285)
T ss_pred eCCHHHHHHHHHHHhCC
Confidence 89999999999775433
No 238
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=29.58 E-value=1.8e+02 Score=28.26 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHhcCCeEE----------EE-eCCcccc--c-ccC-------C-CCC-ceEeecCCHHHHHHHHHhhc-
Q 026977 55 IGLMGLVSKAVHHGGGNVI----------GI-IPRTLMN--K-EIT-------G-ETV-GEVRPVADMHQRKAEMARHS- 110 (230)
Q Consensus 55 ~GlM~ava~gA~~~GG~vi----------GI-~P~~~~~--~-e~~-------~-~~~-~e~i~~~~m~~Rk~~m~~~s- 110 (230)
.|+|++.++-|...|-..+ -+ -|..... + +.. | ..+ .+++.+++-..-|.+..+..
T Consensus 36 ~~~rre~a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t 115 (535)
T KOG4435|consen 36 QGIRREYAKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT 115 (535)
T ss_pred HHHHHHHHHHHHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc
Confidence 5999999999988764322 12 2222110 0 000 0 111 23445555555566554443
Q ss_pred --CeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHH
Q 026977 111 --DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLL 155 (230)
Q Consensus 111 --Da~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~ 155 (230)
| +|++.||=||+.|+..=+ ++-....-||.++.. -|++|.
T Consensus 116 ~~D-ii~VaGGDGT~~eVVTGi--~Rrr~~~~pv~~~P~--G~~~l~ 157 (535)
T KOG4435|consen 116 QED-IIYVAGGDGTIGEVVTGI--FRRRKAQLPVGFYPG--GYDNLW 157 (535)
T ss_pred CCC-eEEEecCCCcHHHhhHHH--HhcccccCceeeccC--ccchHh
Confidence 4 567789999999997544 121134579988853 356544
No 239
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=29.55 E-value=2.6e+02 Score=25.85 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHh--hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchH----------HH--------H
Q 026977 97 ADMHQRKAEMAR--HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNY----------LL--------T 156 (230)
Q Consensus 97 ~~m~~Rk~~m~~--~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~----------l~--------~ 156 (230)
.++.+=-..+.+ ..+++++..=+.|+.+|-...|- .....+|||+.|-. |-+.+ +. .
T Consensus 210 ~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~r~gHaGAi~~~~~G~~~~ 286 (317)
T PTZ00187 210 TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGRRMGHAGAIISGGKGTAPG 286 (317)
T ss_pred CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCCcccchhhhhccCCCCHHH
Confidence 355454555543 45688877777788865543332 11234799999853 23321 11 1
Q ss_pred HHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 026977 157 FIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEYV 192 (230)
Q Consensus 157 ~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~~ 192 (230)
+...+.+. -+.+++|++|+.+.+.+..
T Consensus 287 k~aal~qa---------Gv~v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 287 KIEALEAA---------GVRVVKSPAQLGKTMLEVM 313 (317)
T ss_pred HHHHHHHC---------CCeEeCCHHHHHHHHHHHH
Confidence 11222222 3678999999999998753
No 240
>PRK06138 short chain dehydrogenase; Provisional
Probab=29.54 E-value=1e+02 Score=25.69 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred CcccccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 1 MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|.++|| +|.|.|+++ -....|.+.|+++|+.++
T Consensus 1 m~~~~k--------~~lItG~sg--------~iG~~la~~l~~~G~~v~ 33 (252)
T PRK06138 1 MRLAGR--------VAIVTGAGS--------GIGRATAKLFAREGARVV 33 (252)
T ss_pred CCCCCc--------EEEEeCCCc--------hHHHHHHHHHHHCCCeEE
No 241
>PRK05866 short chain dehydrogenase; Provisional
Probab=29.48 E-value=2.4e+02 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
++|-|.|+++ -..+.+++.|+++|+.|+.-+..
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEECC
Confidence 4566666544 23445666666777777655544
No 242
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=29.27 E-value=86 Score=25.97 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCCCCcEEEEecC-CcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhcCCCccccccCchhhhhhhhhc
Q 026977 136 GIHDKPVGLLNVD-GYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEYVPVHDGVIAKASWEVDKQQAQQ 213 (230)
Q Consensus 136 g~~~kPivlln~~-G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (230)
|.++.||.++... .--.....||+++.+. +-.+|.+.+++.+.+-.+-. ..+-=+.|||+|--
T Consensus 48 GhyGNpI~il~~~l~~~~~~~~flk~i~e~-----------l~~ed~~~l~~~le~rvD~~----g~lylRfDKQ~Ayl 111 (149)
T COG1325 48 GHYGNPITILEVRLERSREARKFLKKLREL-----------LGEEDREYLLETLEERVDEN----GVLYLRFDKQKAYL 111 (149)
T ss_pred cccCCeEEEEEEEecCcHHHHHHHHHHHHh-----------cChHHHHHHHHhhHhccCCC----ceEEEEEchHhhhc
Confidence 4578999998753 1113466666665431 22345566666665543321 12223789999853
No 243
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=29.26 E-value=1.1e+02 Score=23.82 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCeEEEe-cCCcccHHHHH-HHHHHHH---cC-CCCCcEEEEec
Q 026977 101 QRKAEMARHSDCFIAL-PGGYGTLEELL-EVITWAQ---LG-IHDKPVGLLNV 147 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~l-PGG~GTL~El~-~~~t~~q---lg-~~~kPivlln~ 147 (230)
.+-.--+..||++|+. |-=.|++.-.+ ..+.+.. .+ ..+||++++-.
T Consensus 62 ~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~ 114 (152)
T PF03358_consen 62 QELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAV 114 (152)
T ss_dssp HHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEE
T ss_pred HHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEE
Confidence 3334445789988875 65444433222 2223332 22 45899988843
No 244
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=29.16 E-value=3.3e+02 Score=26.39 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccc
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV-YGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE 84 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV-tGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e 84 (230)
++|+|+||. |..... +..|++.||.++ ++- ..+-||...-=||.+..+.+
T Consensus 124 ~~VaviGaG-----PAGl~~----a~~L~~~G~~Vtv~e~------------~~~~GGll~yGIP~~kl~k~ 174 (457)
T COG0493 124 KKVAVIGAG-----PAGLAA----ADDLSRAGHDVTVFER------------VALDGGLLLYGIPDFKLPKD 174 (457)
T ss_pred CEEEEECCC-----chHhhh----HHHHHhCCCeEEEeCC------------cCCCceeEEecCchhhccch
Confidence 789999752 444433 445688899885 332 23456655433687766543
No 245
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=29.00 E-value=67 Score=22.92 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 026977 151 YNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEY 191 (230)
Q Consensus 151 ~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 191 (230)
|+.+...|+.+.+.|+|.. ....+.+++--.++++.+.++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 6778888999999999954 778889999999999988775
No 246
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=28.89 E-value=1.4e+02 Score=26.72 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHH-----HHHHHHHHcCCCCccccCcEEEcC----CHHHHHHHHHhhc
Q 026977 122 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLL-----TFIDKAVDDGFIKPSQRNIIVSAP----NAKELVQKLEEYV 192 (230)
Q Consensus 122 TL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~-----~~l~~~~~~gfi~~~~~~~i~~~~----d~ee~~~~l~~~~ 192 (230)
|++.+++.+.-.+-...+.|++++ +||+++. +|++.+.+.|+ +-+.+.| ..+++.+.+.++-
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm---~Y~N~i~~~G~e~F~~~~~~aGv------dGlIipDLP~ee~~~~~~~~~~~g 140 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLM---TYYNPIFQYGIERFFKEAKEAGV------DGLIIPDLPPEESEELREAAKKHG 140 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEE---E-HHHHHHH-HHHHHHHHHHHTE------EEEEETTSBGGGHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCCCEEEE---eeccHHhccchHHHHHHHHHcCC------CEEEEcCCChHHHHHHHHHHHHcC
Q ss_pred -CCCccccccCchhhhhhhhhceeee
Q 026977 193 -PVHDGVIAKASWEVDKQQAQQQVGF 217 (230)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (230)
++.....|+-.-.+=+.-+.+.-||
T Consensus 141 l~~I~lv~p~t~~~Ri~~i~~~a~gF 166 (259)
T PF00290_consen 141 LDLIPLVAPTTPEERIKKIAKQASGF 166 (259)
T ss_dssp -EEEEEEETTS-HHHHHHHHHH-SSE
T ss_pred CeEEEEECCCCCHHHHHHHHHhCCcE
No 247
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=28.64 E-value=93 Score=28.47 Aligned_cols=50 Identities=26% Similarity=0.221 Sum_probs=33.8
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNYLLTFIDK 160 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~-----~G~~~~l~~~l~~ 160 (230)
..|+|||.= |.-||+|....+.++ +...+||||+-+. .-..|...+++..
T Consensus 77 ~~dG~VVtH-GTDTmeeTA~~Ls~~-l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~A 131 (323)
T smart00870 77 GYDGVVVTH-GTDTLEETAYFLSLT-LDSLDKPVVLTGAMRPATALSSDGPANLLDA 131 (323)
T ss_pred CCCEEEEec-CCccHHHHHHHHHHH-hhcCCCCEEEECCCCCCCCCCchhHHHHHHH
Confidence 468888875 589999999888763 2223899999853 1234555555543
No 248
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=28.60 E-value=1.4e+02 Score=28.42 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=34.7
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNYLLTFIDK 160 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~-----~G~~~~l~~~l~~ 160 (230)
.|+|||.=| .-||+|-..++.++-- ..+|||||.+. .--.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~-~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFE-TLPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhh-CCCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689888875 8999999998876432 23899999863 1244666666553
No 249
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.19 E-value=5.6e+02 Score=24.88 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=65.7
Q ss_pred HHHHHHHHHHCC-CeEEEcCCC--cchHHHHHHHHHhcCCeEEE------EeCCcccccccCCCCC-ceEeecCCHHHHH
Q 026977 34 AIDLAHELVARR-LDLVYGGGS--IGLMGLVSKAVHHGGGNVIG------IIPRTLMNKEITGETV-GEVRPVADMHQRK 103 (230)
Q Consensus 34 A~~LG~~LA~~g-~~lVtGGg~--~GlM~ava~gA~~~GG~viG------I~P~~~~~~e~~~~~~-~e~i~~~~m~~Rk 103 (230)
..++.+.|.+.. -.|+.|+|- .+.-+++.+=|-..|-.|+. ++|+. |+.+ ..+-.. .-...+
T Consensus 194 i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~-------hp~~~G~~g~~-~~~~~~ 265 (557)
T PRK08199 194 LARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNR-------HPNYAGDLGLG-INPALA 265 (557)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCC-------ChhhccCCcCc-CCHHHH
Confidence 455666777644 444555543 25556666666667777763 33322 1111 111111 112233
Q ss_pred HHHHhhcCeEEEecCCcccHHHHHHHHHHHHcC--CCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLG--IHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg--~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
. .++.||.+|+++-.++...=. -+.+ +. ..++.++-++.+. + . +.......+.+..|+
T Consensus 266 ~-~l~~aDlvl~lG~~~~~~~~~--~~~~--~~~~~~~~~~i~vd~d~-~--------~------~~~~~~~~~~i~~D~ 325 (557)
T PRK08199 266 A-RIREADLVLAVGTRLGEVTTQ--GYTL--LDIPVPRQTLVHVHPDA-E--------E------LGRVYRPDLAIVADP 325 (557)
T ss_pred H-HHHhCCEEEEeCCCCcccccc--cccc--ccccCCCCeEEEEeCCH-H--------H------hCCccCCCeEEecCH
Confidence 3 347899999998765443210 0111 11 1234577777552 0 0 111112346778899
Q ss_pred HHHHHHHHhh
Q 026977 182 KELVQKLEEY 191 (230)
Q Consensus 182 ee~~~~l~~~ 191 (230)
..+++.|.+.
T Consensus 326 ~~~l~~L~~~ 335 (557)
T PRK08199 326 AAFAAALAAL 335 (557)
T ss_pred HHHHHHHHhc
Confidence 9988888764
No 250
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.18 E-value=2.8e+02 Score=21.28 Aligned_cols=93 Identities=15% Similarity=0.050 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCeEEEcCCC-cchHHHHHHHHHhcCC-eEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcC
Q 026977 34 AIDLAHELVARRLDLVYGGGS-IGLMGLVSKAVHHGGG-NVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSD 111 (230)
Q Consensus 34 A~~LG~~LA~~g~~lVtGGg~-~GlM~ava~gA~~~GG-~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sD 111 (230)
..++.+.+.+.....++|-|+ .|+....+.-..+.++ .+.++.. .|..|- ...+++..|
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~-----~e~~hg--------------~~~~~~~~~ 63 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSA-----GEFKHG--------------PIALVDEGT 63 (153)
T ss_pred HHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccH-----HHhccC--------------hhhhccCCC
Confidence 456677787778888888773 2333333333334443 3333321 111121 122456667
Q ss_pred eEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 112 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 112 a~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
.+|++-..-.|-++...++.. +...+.|++++..
T Consensus 64 ~vi~is~~g~t~~~~~~~~~~--~~~~~~~vi~it~ 97 (153)
T cd05009 64 PVIFLAPEDRLEEKLESLIKE--VKARGAKVIVITD 97 (153)
T ss_pred cEEEEecCChhHHHHHHHHHH--HHHcCCEEEEEec
Confidence 666665444666666655543 2234678877754
No 251
>PRK07825 short chain dehydrogenase; Provisional
Probab=28.16 E-value=1.2e+02 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred CcccccccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 1 MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
|+|+|| +|.|.|+|+ -..+.+.+.|+++|+.++..+.+
T Consensus 1 ~~~~~~--------~ilVtGasg--------giG~~la~~l~~~G~~v~~~~r~ 38 (273)
T PRK07825 1 DDLRGK--------VVAITGGAR--------GIGLATARALAALGARVAIGDLD 38 (273)
T ss_pred CCCCCC--------EEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEECC
No 252
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=28.13 E-value=1.3e+02 Score=25.98 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=53.2
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcC-------CCCCcEEEEecCCcch--HHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYN--YLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg-------~~~kPivlln~~G~~~--~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
-|+.|+.|=...||..+..=++-.-+. +.++|.+|+-.+-=+. +|.++++-...-+.|-|.....+.--.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 478999999999999887655443332 2478998885442222 3444333222334556666677777789
Q ss_pred HHHHHHHHHh
Q 026977 181 AKELVQKLEE 190 (230)
Q Consensus 181 ~ee~~~~l~~ 190 (230)
.||+++++..
T Consensus 161 ieDlvd~~v~ 170 (191)
T COG0163 161 IEDLVDFVVG 170 (191)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 253
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=28.12 E-value=2.9e+02 Score=23.98 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=51.6
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHH-----cCC-CCCcEEEEec--CCcchH--HHHHHHHHHHcCC--CCccccC
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQ-----LGI-HDKPVGLLNV--DGYYNY--LLTFIDKAVDDGF--IKPSQRN 173 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~q-----lg~-~~kPivlln~--~G~~~~--l~~~l~~~~~~gf--i~~~~~~ 173 (230)
+.+.+|++|+.|=..+|+.-+..=++-.- +.. .++|+++... ...|+. ....++.+.+.|+ +.+....
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~ 172 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKR 172 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCc
Confidence 44579999999999999987753221111 111 3799998742 247762 2333455555443 3332221
Q ss_pred cE------EEcCCHHHHHHHHHhhcCC
Q 026977 174 II------VSAPNAKELVQKLEEYVPV 194 (230)
Q Consensus 174 ~i------~~~~d~ee~~~~l~~~~~~ 194 (230)
+- =-..+|++++..+.++...
T Consensus 173 lAcg~~G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 173 LACGDYGNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHHhh
Confidence 10 1134789999999887543
No 254
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=28.11 E-value=4.6e+02 Score=23.85 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHhhcCeEEEe--------cCCcccHHHHHHHHHHHHcCCCCCcEEEEec---CCcchHHHHHHHHHHHcCCCCcc---
Q 026977 105 EMARHSDCFIAL--------PGGYGTLEELLEVITWAQLGIHDKPVGLLNV---DGYYNYLLTFIDKAVDDGFIKPS--- 170 (230)
Q Consensus 105 ~m~~~sDa~I~l--------PGG~GTL~El~~~~t~~qlg~~~kPivlln~---~G~~~~l~~~l~~~~~~gfi~~~--- 170 (230)
.++..+..+|++ |+.+||.+++-.+..- .+....+.+-|.. .+-=+...+|++++....-..+.
T Consensus 113 ~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~--~~~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~~~~~ 190 (352)
T PF09848_consen 113 EIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAEN--LGIEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISPKPFN 190 (352)
T ss_pred HHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHh--cCCccccCcCcCcceecCCCHHHHHHHHHHHhccccCccccc
Confidence 455668877765 7888998877665432 2222222212221 11125788888888765555432
Q ss_pred --ccCcEEEcCCHHHHHHHHHhhcC
Q 026977 171 --QRNIIVSAPNAKELVQKLEEYVP 193 (230)
Q Consensus 171 --~~~~i~~~~d~ee~~~~l~~~~~ 193 (230)
..=.+.+++|++++.+.|++-..
T Consensus 191 ~~~~yd~~~f~~~~~~~~~i~~k~~ 215 (352)
T PF09848_consen 191 PDENYDFRVFDSPEEMKEAIKEKNK 215 (352)
T ss_pred cCCceeEEEECCHHHHHHHHHHHhc
Confidence 23457899999999999997543
No 255
>PRK00654 glgA glycogen synthase; Provisional
Probab=28.09 E-value=5.2e+02 Score=24.39 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=42.0
Q ss_pred HHHHhhcCeEEEe--cCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCC-CccccCcEEEcCC
Q 026977 104 AEMARHSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFI-KPSQRNIIVSAPN 180 (230)
Q Consensus 104 ~~m~~~sDa~I~l--PGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi-~~~~~~~i~~~~d 180 (230)
..+...||++|.- -.|.|.. +.|++. +++|+|+-+..|.-+-+. ++-- .......++-.+|
T Consensus 351 ~~~~~~aDv~v~PS~~E~~gl~--~lEAma------~G~p~V~~~~gG~~e~v~--------~~~~~~~~~~G~lv~~~d 414 (466)
T PRK00654 351 HRIYAGADMFLMPSRFEPCGLT--QLYALR------YGTLPIVRRTGGLADTVI--------DYNPEDGEATGFVFDDFN 414 (466)
T ss_pred HHHHhhCCEEEeCCCCCCchHH--HHHHHH------CCCCEEEeCCCCccceee--------cCCCCCCCCceEEeCCCC
Confidence 3567899988763 2466642 344443 488998887766544221 1100 0112344455678
Q ss_pred HHHHHHHHHhhc
Q 026977 181 AKELVQKLEEYV 192 (230)
Q Consensus 181 ~ee~~~~l~~~~ 192 (230)
++++.+.|.+..
T Consensus 415 ~~~la~~i~~~l 426 (466)
T PRK00654 415 AEDLLRALRRAL 426 (466)
T ss_pred HHHHHHHHHHHH
Confidence 998888887653
No 256
>PRK07109 short chain dehydrogenase; Provisional
Probab=28.06 E-value=2.9e+02 Score=24.92 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=33.3
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
.++|.|.|+|+ -..+.+.+.|+++|+.|+.-+...--.+...+...+.|+++..+.
T Consensus 8 ~k~vlITGas~--------gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 8 RQVVVITGASA--------GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CCEEEEECCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 35688887765 244567777888999987655432222333333444566666553
No 257
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.89 E-value=1.5e+02 Score=26.91 Aligned_cols=51 Identities=27% Similarity=0.276 Sum_probs=31.3
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcC
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NYLLTFIDKAVDDG 165 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~--G~~-----~~l~~~l~~~~~~g 165 (230)
.+|.+|+ -||=||+--.+.. +..+++||+=+|.. ||. +.+.+.++++.+..
T Consensus 64 ~~Dlvi~-iGGDGT~L~aa~~-----~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 64 ISDFLIS-LGGDGTLISLCRK-----AAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCCEEEE-ECCCHHHHHHHHH-----hcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCC
Confidence 4675554 5789997655433 23458999888864 566 45555565554433
No 258
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.62 E-value=3.7e+02 Score=22.52 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
+++-|.|+++ -...++.+.|+++|+.|+..+..
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCC
Confidence 4566666554 23446666777778877655443
No 259
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.56 E-value=2.6e+02 Score=23.44 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=52.2
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHH-----cC-CCCCcEEEEec--CCcchH--HHHHHHHHHHcCC--CCccccC
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQ-----LG-IHDKPVGLLNV--DGYYNY--LLTFIDKAVDDGF--IKPSQRN 173 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~q-----lg-~~~kPivlln~--~G~~~~--l~~~l~~~~~~gf--i~~~~~~ 173 (230)
+...+|++|+.|=-.+|+.-+..=++-.- +. ..++|+++.-. ...|.. ..+-++.+.+.|+ +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 34678999999999999877643111100 11 24899999743 146664 2233445555553 3333211
Q ss_pred c------EEEcCCHHHHHHHHHhhcC
Q 026977 174 I------IVSAPNAKELVQKLEEYVP 193 (230)
Q Consensus 174 ~------i~~~~d~ee~~~~l~~~~~ 193 (230)
+ .---.+++|+++++.++..
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 0 2335689999999988653
No 260
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=27.40 E-value=3.7e+02 Score=22.52 Aligned_cols=71 Identities=21% Similarity=0.391 Sum_probs=41.8
Q ss_pred HHHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 026977 103 KAEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN 180 (230)
Q Consensus 103 k~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d 180 (230)
..-+...||++|... .|+|+- +.|++. .++|++.-+..+. .. .+.++ ....+.-.+|
T Consensus 272 ~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~------~G~pvI~~~~~~~-~~-------~~~~~-----~~g~~~~~~~ 330 (377)
T cd03798 272 VPAYYAAADVFVLPSLREGFGLV--LLEAMA------CGLPVVATDVGGI-PE-------IITDG-----ENGLLVPPGD 330 (377)
T ss_pred HHHHHHhcCeeecchhhccCChH--HHHHHh------cCCCEEEecCCCh-HH-------HhcCC-----cceeEECCCC
Confidence 445667899877643 233332 455554 4999988765432 22 11111 1124555679
Q ss_pred HHHHHHHHHhhcCC
Q 026977 181 AKELVQKLEEYVPV 194 (230)
Q Consensus 181 ~ee~~~~l~~~~~~ 194 (230)
++++.+.|.+....
T Consensus 331 ~~~l~~~i~~~~~~ 344 (377)
T cd03798 331 PEALAEAILRLLAD 344 (377)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
No 261
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=27.34 E-value=2.8e+02 Score=24.63 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=42.0
Q ss_pred HHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 026977 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA 181 (230)
Q Consensus 104 ~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ 181 (230)
..+...||+++..+ -|+|.. +.|++.. ++||+..+..|. ..+ +.++ . .-+.+..|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAma~------G~PvI~s~~~~~-~e~-------i~~~-----~-~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAMYA------GKPVIACNSGGP-LET-------VVDG-----E-TGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHHHc------CCCEEEECCCCc-HHH-------hccC-----C-ceEEeCCCH
Confidence 45678899988643 244443 3566653 899999876542 222 1111 1 223445689
Q ss_pred HHHHHHHHhhcCC
Q 026977 182 KELVQKLEEYVPV 194 (230)
Q Consensus 182 ee~~~~l~~~~~~ 194 (230)
+++.+.|.+....
T Consensus 352 ~~~a~~i~~l~~~ 364 (392)
T cd03805 352 EEFAEAMLKLAND 364 (392)
T ss_pred HHHHHHHHHHHhC
Confidence 9998888876544
No 262
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.31 E-value=1.5e+02 Score=27.67 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCC--CCCceEeec--CCHHHHHH
Q 026977 29 CYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITG--ETVGEVRPV--ADMHQRKA 104 (230)
Q Consensus 29 ~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~--~~~~e~i~~--~~m~~Rk~ 104 (230)
...+..+.+++..-...+.+|.|+|+.|.. +++.-.+.|-.++.|-.+...-.+... ..+ ..+.- .+...-++
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~--l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~-~~i~gd~~~~~~L~~ 292 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMIVGGGNIGYY--LAKLLEKEGYSVKLIERDPERAEELAEELPNT-LVLHGDGTDQELLEE 292 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEEECCCHHHHH--HHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC-eEEECCCCCHHHHHh
Confidence 344444555543333578899999875544 666555567788777322111001101 111 22222 33344444
Q ss_pred HHHhhcCeEEEecCCc
Q 026977 105 EMARHSDCFIALPGGY 120 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~ 120 (230)
.-++.+|++|++.+.-
T Consensus 293 ~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 293 EGIDEADAFIALTNDD 308 (453)
T ss_pred cCCccCCEEEECCCCc
Confidence 5567899999987764
No 263
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=27.31 E-value=3.9e+02 Score=23.01 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.9
Q ss_pred HhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 026977 107 ARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 151 (230)
Q Consensus 107 ~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~ 151 (230)
.....+.|+|+||. |...+++.+.-. ...=..+.+++.+.+|
T Consensus 25 ~~~~~~~lalsGGs-tp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGGR-SPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCCc-cHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 34677899999985 777788887632 2222445555555555
No 264
>PRK07832 short chain dehydrogenase; Provisional
Probab=26.94 E-value=2.9e+02 Score=23.56 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV 93 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~ 93 (230)
+++.|.|+++ -....+++.|+++|+.++.-+....-.+...+.....++.++-+.+......+...
T Consensus 1 k~vlItGas~--------giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~------ 66 (272)
T PRK07832 1 KRCFVTGAAS--------GIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVA------ 66 (272)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHH------
Q ss_pred eecCCHHHHHHHHHhhcCeEEEecC
Q 026977 94 RPVADMHQRKAEMARHSDCFIALPG 118 (230)
Q Consensus 94 i~~~~m~~Rk~~m~~~sDa~I~lPG 118 (230)
.+.++-......-|++|-..|
T Consensus 67 ----~~~~~~~~~~~~id~lv~~ag 87 (272)
T PRK07832 67 ----AFAADIHAAHGSMDVVMNIAG 87 (272)
T ss_pred ----HHHHHHHHhcCCCCEEEECCC
No 265
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=26.94 E-value=4.8e+02 Score=23.66 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhh------cCeEEEecCCcccHHHHHHHHHHHHcC
Q 026977 98 DMHQRKAEMARH------SDCFIALPGGYGTLEELLEVITWAQLG 136 (230)
Q Consensus 98 ~m~~Rk~~m~~~------sDa~I~lPGG~GTL~El~~~~t~~qlg 136 (230)
+=.+|-.-+.+. .||++..-||+|+.. +..-+.|..+.
T Consensus 49 td~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~r-lLp~Ld~~~i~ 92 (305)
T PRK11253 49 TDGERLADLNSLADLTTPNTIVLAVRGGYGASR-LLAGIDWQGLA 92 (305)
T ss_pred CHHHHHHHHHHHHhcCCCccEEEEecccCCHhH-hhhhCCHHHHh
Confidence 345666666543 579999999999954 55554555544
No 266
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=26.89 E-value=1.9e+02 Score=22.13 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=32.4
Q ss_pred EeecCCHH--HHHHHHH--hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCc---EEEEecCCcchHHHHHHH
Q 026977 93 VRPVADMH--QRKAEMA--RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKP---VGLLNVDGYYNYLLTFID 159 (230)
Q Consensus 93 ~i~~~~m~--~Rk~~m~--~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kP---ivlln~~G~~~~l~~~l~ 159 (230)
+++..|.. .|+.+.- +..+.-++.. ||-+|+..++ +|| ++.+...||.+.+++.++
T Consensus 37 VI~A~D~s~~~kkki~~~~~~~~vp~~~~---~t~~eLg~a~--------Gk~~~~~iai~d~g~a~~l~~~~~ 99 (104)
T PRK05583 37 IIISNDISENSKNKFKNYCNKYNIPYIEG---YSKEELGNAI--------GRDEIKILGVKDKNMAKKLLKLWN 99 (104)
T ss_pred EEEeCCCCHhHHHHHHHHHHHcCCCEEEe---cCHHHHHHHh--------CCCCeEEEEEeChHHHHHHHHHHH
Confidence 44455553 3444432 3445555544 6889998776 444 333445578888887654
No 267
>PRK07677 short chain dehydrogenase; Provisional
Probab=26.72 E-value=97 Score=26.11 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=6.1
Q ss_pred cCeEEEecCC
Q 026977 110 SDCFIALPGG 119 (230)
Q Consensus 110 sDa~I~lPGG 119 (230)
-|.+|-..|+
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 4666666654
No 268
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.68 E-value=1.2e+02 Score=25.85 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=29.1
Q ss_pred cceEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCeE-EEcC
Q 026977 13 FKRVCVFCGSSTGKR-NCYSDAAIDLAHELVARRLDL-VYGG 52 (230)
Q Consensus 13 ~~~V~VfggS~~~~~-~~~~~~A~~LG~~LA~~g~~l-VtGG 52 (230)
|++|+|.|.-..++. ==+...+++|+..|+++||.+ ||.=
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~ 42 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCR 42 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEc
Confidence 678999985444332 246788999999999999975 5543
No 269
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.63 E-value=1.2e+02 Score=26.50 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=34.8
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
||+++|+|-.. .-..|++.+++.||.++.|+.. -.++....+.+.+..++|.
T Consensus 1 m~~~~i~GtGn---------iG~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIGTGN---------IGSALALRLAKAGHEVIIGSSR--GPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEeccCh---------HHHHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhccccccC
Confidence 56777776333 3347888999999999999764 4555555555555554444
No 270
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=26.60 E-value=2.2e+02 Score=28.84 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=47.8
Q ss_pred eEEEcCCCcc---hHHHHHHHHHhc--CCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEE-----e
Q 026977 47 DLVYGGGSIG---LMGLVSKAVHHG--GGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIA-----L 116 (230)
Q Consensus 47 ~lVtGGg~~G---lM~ava~gA~~~--GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~-----l 116 (230)
.++||...+| |+.|++..+.+. |..|+-+....+. .+. ...+....+..-+. .++..|.+|+ +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el-----~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l 389 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEF-----INSIRDGKGDSFRR-RYREMDILLVDDIQFL 389 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHH-----HHHHHhccHHHHHH-HhhcCCEEEEehhccc
Confidence 5787765445 899999988763 4555544222111 111 00001112211111 2456787665 3
Q ss_pred cCCcccHHHHHHHHHHHHcCCCCCcEEEE
Q 026977 117 PGGYGTLEELLEVITWAQLGIHDKPVGLL 145 (230)
Q Consensus 117 PGG~GTL~El~~~~t~~qlg~~~kPivll 145 (230)
.|--.|-+|||.++... ...+|+|++.
T Consensus 390 ~gke~tqeeLF~l~N~l--~e~gk~IIIT 416 (617)
T PRK14086 390 EDKESTQEEFFHTFNTL--HNANKQIVLS 416 (617)
T ss_pred cCCHHHHHHHHHHHHHH--HhcCCCEEEe
Confidence 45556778899877543 2446888874
No 271
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=26.52 E-value=1.5e+02 Score=22.99 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
+.|+|++. ..+.... ..|..|++.||+.|..++
T Consensus 1 k~i~v~s~-~~g~G~t--~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSP-KGGVGKT--TLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEES-STTSSHH--HHHHHHHHHHHHTTT-EE
T ss_pred CEEEEECC-CCCCCHH--HHHHHHHHHHHhcCCCeE
Confidence 35777753 3332232 467888889998876543
No 272
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=26.51 E-value=4.7e+02 Score=23.35 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
...+|+|+|+.|++ +..-|+..|.+++.+.
T Consensus 168 ~~VlV~G~G~vG~~--a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGY--MVQTAKAMGAAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCeEEEEc
Confidence 45678888665554 4566777788887763
No 273
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.39 E-value=1.1e+02 Score=29.84 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l 48 (230)
.+.|||.||....-..-. -.||.|+..||+.
T Consensus 266 ~P~V~Ilcgpgnnggdg~-----v~gRHL~~~G~~~ 296 (453)
T KOG2585|consen 266 WPLVAILCGPGNNGGDGL-----VCGRHLAQHGYTP 296 (453)
T ss_pred CceEEEEeCCCCccchhH-----HHHHHHHHcCcee
Confidence 345999998775322222 2889999999665
No 274
>PRK07102 short chain dehydrogenase; Provisional
Probab=26.34 E-value=93 Score=26.01 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=16.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtG 51 (230)
++|.|.|+++ -....+.+.|+++|+.|+--
T Consensus 2 ~~vlItGas~--------giG~~~a~~l~~~G~~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATS--------DIARACARRYAAAGARLYLA 31 (243)
T ss_pred cEEEEEcCCc--------HHHHHHHHHHHhcCCEEEEE
Confidence 4566666554 13345555566667665433
No 275
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=26.26 E-value=80 Score=28.31 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=22.7
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeC
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P 77 (230)
...+|+|+|..|++ +..-|+..|.+++.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46789998766654 45678888888888754
No 276
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=26.18 E-value=3e+02 Score=25.54 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=42.7
Q ss_pred HHHHhhcCeEEEec--CC----cccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 104 AEMARHSDCFIALP--GG----YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 104 ~~m~~~sDa~I~lP--GG----~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
..+...||+||.-. +. -|.-.=+.|++. .++||+.-+..|. .. + +.+.....+.-
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma------~G~PVI~t~~~g~-~E-------~-----v~~~~~G~lv~ 353 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPVALMEAMA------VGIPVVSTLHSGI-PE-------L-----VEADKSGWLVP 353 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccHHHHHHHh------CCCCEEEeCCCCc-hh-------h-----hcCCCceEEeC
Confidence 34678899888631 11 222334566665 3999998876542 21 2 22223334444
Q ss_pred cCCHHHHHHHHHhhcC
Q 026977 178 APNAKELVQKLEEYVP 193 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~ 193 (230)
.+|++++.+.|.+...
T Consensus 354 ~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 354 ENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5799999999988755
No 277
>PRK07102 short chain dehydrogenase; Provisional
Probab=26.16 E-value=3.8e+02 Score=22.21 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=26.1
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
..+|+||.. |+-.++++...+.|-.|+.+-
T Consensus 3 ~vlItGas~-giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATS-DIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCc-HHHHHHHHHHHhcCCEEEEEe
Confidence 468999998 999999999999988887774
No 278
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.05 E-value=3.4e+02 Score=24.32 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=17.1
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
+|.-||. |-|-.+++ ....+-.++||
T Consensus 61 vi~iGGD-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 61 IIAIGGD-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred EEEEeCc-HHHHHHHH-hcCCCCeEEEE
Confidence 4555566 88877777 66656666666
No 279
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=25.83 E-value=92 Score=25.67 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=22.1
Q ss_pred hhcCeEEEecCC-----cccHHHHHHHHHHHHc-CCCCCcEEEEecC
Q 026977 108 RHSDCFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVGLLNVD 148 (230)
Q Consensus 108 ~~sDa~I~lPGG-----~GTL~El~~~~t~~ql-g~~~kPivlln~~ 148 (230)
..+|.+|+.+|| ..+.......+.+..+ ...++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 467777777775 2222222111222222 2569999999753
No 280
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=25.68 E-value=1.6e+02 Score=23.82 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCeEEEEeC
Q 026977 58 MGLVSKAVHHGGGNVIGIIP 77 (230)
Q Consensus 58 M~ava~gA~~~GG~viGI~P 77 (230)
|+.+.+-..+.|..++|-.|
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 44555555555666666544
No 281
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=25.57 E-value=1.7e+02 Score=26.87 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=49.7
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHH-HHHHHHHhhcCeEEEecCCcccHHHH
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMH-QRKAEMARHSDCFIALPGGYGTLEEL 126 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~-~Rk~~m~~~sDa~I~lPGG~GTL~El 126 (230)
+|-|||+.|++-|..-.....|.+|+-|=|....+ .++.++=....+++. -+..+-..-.+..|..+++.-++.
T Consensus 3 iIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~---~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~-- 77 (374)
T PF05834_consen 3 IIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPP---WPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI-- 77 (374)
T ss_pred EEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcccc---ccCCcccccccccccchHHHHheecCceEEEeCCCceEEc--
Confidence 67799999999877763334444444442322110 012211111122222 222333333577888887654433
Q ss_pred HHHHHHHHcCCCCCcEEEEecCCcchHHHHHHH
Q 026977 127 LEVITWAQLGIHDKPVGLLNVDGYYNYLLTFID 159 (230)
Q Consensus 127 ~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~ 159 (230)
..|...++...|++.+.+.+.
T Consensus 78 ------------~~~Y~~i~~~~f~~~l~~~~~ 98 (374)
T PF05834_consen 78 ------------DYPYCMIDRADFYEFLLERAA 98 (374)
T ss_pred ------------ccceEEEEHHHHHHHHHHHhh
Confidence 256667777777777776544
No 282
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=25.55 E-value=1.4e+02 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=24.6
Q ss_pred HHHHhhcCeEEEec--CCcccHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 026977 104 AEMARHSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 149 (230)
Q Consensus 104 ~~m~~~sDa~I~lP--GG~GTL~El~~~~t~~qlg~~~kPivlln~~G 149 (230)
..+...||++|.-. -|.|.. +.|++. .++||+.-+..|
T Consensus 275 ~~~~~~aDv~v~ps~~e~~g~~--~lEA~a------~G~PvI~s~~~~ 314 (388)
T TIGR02149 275 VELLSNAEVFVCPSIYEPLGIV--NLEAMA------CGTPVVASATGG 314 (388)
T ss_pred HHHHHhCCEEEeCCccCCCChH--HHHHHH------cCCCEEEeCCCC
Confidence 44568899887632 345543 356664 499999887654
No 283
>PRK12743 oxidoreductase; Provisional
Probab=25.49 E-value=4.1e+02 Score=22.33 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=8.6
Q ss_pred hcCeEEEecCCc
Q 026977 109 HSDCFIALPGGY 120 (230)
Q Consensus 109 ~sDa~I~lPGG~ 120 (230)
.-|++|...|..
T Consensus 80 ~id~li~~ag~~ 91 (256)
T PRK12743 80 RIDVLVNNAGAM 91 (256)
T ss_pred CCCEEEECCCCC
Confidence 358888887743
No 284
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.46 E-value=1.2e+02 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 285
>PRK09330 cell division protein FtsZ; Validated
Probab=25.45 E-value=3.2e+02 Score=25.98 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEec
Q 026977 55 IGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALP 117 (230)
Q Consensus 55 ~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lP 117 (230)
+|.=-.+++-|++.|-.+++|.|..+.- |.... ...-..--..|.+.+|.+|++|
T Consensus 113 TGaapvIA~iake~g~ltvaVvt~PF~f-EG~~r-------~~nA~~gL~~L~~~~D~vIvi~ 167 (384)
T PRK09330 113 TGAAPVVAEIAKELGILTVAVVTKPFSF-EGKKR-------MKQAEEGIEELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCccc-cchhH-------HHHHHHHHHHHHHHCCEEEEEe
Confidence 4666688899999999999997643211 10000 0011233445677889888886
No 286
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.38 E-value=6e+02 Score=24.24 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCc------cccc-ccCCCCCceEeecCC--HHHH-HHHHHh--hcC
Q 026977 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT------LMNK-EITGETVGEVRPVAD--MHQR-KAEMAR--HSD 111 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~------~~~~-e~~~~~~~e~i~~~~--m~~R-k~~m~~--~sD 111 (230)
++..+|+.+| |.-..+++.+.+.|..+--..|.. ..|. -...|+++ +.-..+ ...+ -+.+.+ ..|
T Consensus 296 ~rvaivs~sG--G~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlD-l~~~~~~~~~~~al~~l~~dp~vd 372 (447)
T TIGR02717 296 NRVAIITNAG--GPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVD-VLGDATPERYAKALKTVAEDENVD 372 (447)
T ss_pred CeEEEEECCc--hHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEe-cCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5678888877 555567888888777533221110 0111 11234443 211111 1111 122222 246
Q ss_pred eEEEe--cCCcccHHHHHHHHHHHHcCCC-CCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 026977 112 CFIAL--PGGYGTLEELLEVITWAQLGIH-DKPVGLLNVDG-YYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQK 187 (230)
Q Consensus 112 a~I~l--PGG~GTL~El~~~~t~~qlg~~-~kPivlln~~G-~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~ 187 (230)
++++. |++....+++.+++.-. ...+ +||+++....+ ..+...+ .+.+.| +.++++|+++++-
T Consensus 373 ~Vlv~~~~~~~~~~~~~a~~l~~~-~~~~~~KPvv~~~~gg~~~~~~~~---~L~~~G---------ip~f~~p~~A~~a 439 (447)
T TIGR02717 373 GVVVVLTPTAMTDPEEVAKGIIEG-AKKSNEKPVVAGFMGGKSVDPAKR---ILEENG---------IPNYTFPERAVKA 439 (447)
T ss_pred EEEEEccCCccCCHHHHHHHHHHH-HHhcCCCcEEEEecCCccHHHHHH---HHHhCC---------CCccCCHHHHHHH
Confidence 66654 45555556666665432 2234 89995543322 1122222 233323 5678899999998
Q ss_pred HHhhc
Q 026977 188 LEEYV 192 (230)
Q Consensus 188 l~~~~ 192 (230)
+....
T Consensus 440 l~~~~ 444 (447)
T TIGR02717 440 LSALY 444 (447)
T ss_pred HHHHH
Confidence 87653
No 287
>PRK13937 phosphoheptose isomerase; Provisional
Probab=25.34 E-value=1.7e+02 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchH
Q 026977 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLM 58 (230)
Q Consensus 28 ~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM 58 (230)
+...+.|.++.+.|.+.+...++|.|..++.
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 5667888999999999999999999885553
No 288
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=25.27 E-value=1.9e+02 Score=27.10 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=27.0
Q ss_pred CeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 111 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 111 Da~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
|.||+.= |.-||+|-...+.++.- ..|||||.+.
T Consensus 102 dGvVItH-GTDTmeeTA~~L~l~l~--~~kPVVlTGa 135 (351)
T COG0252 102 DGVVITH-GTDTMEETAFFLSLTLN--TPKPVVLTGA 135 (351)
T ss_pred CeEEEeC-CCchHHHHHHHHHHHhc--CCCCEEEeCC
Confidence 7787776 58999999999887643 3899999863
No 289
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.19 E-value=1e+02 Score=26.60 Aligned_cols=33 Identities=24% Similarity=-0.004 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
++|.|.|+++ -..+.+.+.|+++|+.|+..+.+
T Consensus 5 ~~vlVtGasg--------giG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVSS--------GFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCCC--------hHHHHHHHHHHhCcCEEEEEeCC
Confidence 4677887665 23456666777788887765543
No 290
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=25.14 E-value=1.1e+02 Score=31.44 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=30.7
Q ss_pred cccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 6 KIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 6 ~~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
.+||.+ ++|+|.+|......+.=...|..+.+.|-+.||.++
T Consensus 446 ~~~~~~--~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 446 DFEPKK--LSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred hcCCCC--cEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 467753 467777766655556666888999999988888875
No 291
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=25.10 E-value=4.7e+02 Score=22.87 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCCe-EEEcCCC---cchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHH----
Q 026977 34 AIDLAHELVARRLD-LVYGGGS---IGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAE---- 105 (230)
Q Consensus 34 A~~LG~~LA~~g~~-lVtGGg~---~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~---- 105 (230)
+..|-+.+.+.++. .+..-.. -|.-.|-+.||..+.+..+-++= . ++++.+++-++-..
T Consensus 49 ~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD-~------------D~i~~~~~i~~~~~~~~~ 115 (281)
T PF10111_consen 49 DEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLD-A------------DCIPSPDFIEKLLNHVKK 115 (281)
T ss_pred HHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEc-C------------CeeeCHHHHHHHHHHHHH
Confidence 45666667777777 6555433 38999999999999999887741 1 23334444333332
Q ss_pred HHhhcCeEEEecCCcccH
Q 026977 106 MARHSDCFIALPGGYGTL 123 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL 123 (230)
+....++++++|+..=+-
T Consensus 116 l~~~~~~~~~~p~~yl~~ 133 (281)
T PF10111_consen 116 LDKNPNAFLVYPCLYLSE 133 (281)
T ss_pred HhcCCCceEEEeeeeccc
Confidence 455677999999865543
No 292
>PRK05854 short chain dehydrogenase; Provisional
Probab=25.05 E-value=98 Score=27.56 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
+++.|-|+++ + ...++++.|+++|+.|+.-+..
T Consensus 15 k~~lITGas~-G-------IG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASD-G-------LGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCC-h-------HHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555443 2 3345666677788887655544
No 293
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.04 E-value=1.3e+02 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
..+|+|.|..+.+. .||+.|.+.||.++
T Consensus 10 ~l~I~iIGaGrVG~---------~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 10 RLKIGIIGAGRVGT---------ALARALARAGHEVV 37 (127)
T ss_dssp --EEEEECTSCCCC---------HHHHHHHHTTSEEE
T ss_pred ccEEEEECCCHHHH---------HHHHHHHHCCCeEE
Confidence 46899998766553 68889999999875
No 294
>PRK10494 hypothetical protein; Provisional
Probab=24.99 E-value=2.7e+02 Score=24.65 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=8.0
Q ss_pred hcCeEEEecCCc
Q 026977 109 HSDCFIALPGGY 120 (230)
Q Consensus 109 ~sDa~I~lPGG~ 120 (230)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 367777777764
No 295
>PRK09072 short chain dehydrogenase; Provisional
Probab=24.91 E-value=1.4e+02 Score=25.30 Aligned_cols=29 Identities=28% Similarity=0.190 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 026977 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (230)
Q Consensus 15 ~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtG 51 (230)
+|.|.|+|+. ...++.+.|+++|+.|+-=
T Consensus 7 ~vlItG~s~~--------iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 7 RVLLTGASGG--------IGQALAEALAAAGARLLLV 35 (263)
T ss_pred EEEEECCCch--------HHHHHHHHHHHCCCEEEEE
Confidence 5777776552 3445666667777776543
No 296
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=24.90 E-value=84 Score=28.18 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEe
Q 026977 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVR 94 (230)
Q Consensus 15 ~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i 94 (230)
++=|.+.++.--.+.+ ...+-++.|.+.||.++-=. .=.-.+++.-.+.|.. .|+|-.- |- .... -+
T Consensus 102 KlEVi~d~~tLlPD~~--etl~Aae~Lv~eGF~VlPY~---~dD~v~arrLee~Gca--avMPl~a-PI---GSg~--G~ 168 (262)
T COG2022 102 KLEVIGDEKTLLPDPI--ETLKAAEQLVKEGFVVLPYT---TDDPVLARRLEEAGCA--AVMPLGA-PI---GSGL--GL 168 (262)
T ss_pred EEEEecCCcccCCChH--HHHHHHHHHHhCCCEEeecc---CCCHHHHHHHHhcCce--Eeccccc-cc---cCCc--Cc
Confidence 3555555554322222 12234455677777775322 2233455555566654 4455321 10 0000 00
Q ss_pred ecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 95 PVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 95 ~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
. + ..=-++|++.+|.-|++--|+||.+...+++.| +.--+++|+
T Consensus 169 ~--n-~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl------G~DaVL~NT 212 (262)
T COG2022 169 Q--N-PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 212 (262)
T ss_pred C--C-HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc------ccceeehhh
Confidence 0 0 223567888999999999999999999999877 667778875
No 297
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.89 E-value=1.5e+02 Score=26.80 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=24.0
Q ss_pred hcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 109 HSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 109 ~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
.+| +|+.-||=||+-+.+..+ ...++||+-+|..
T Consensus 62 ~~d-~vi~~GGDGt~l~~~~~~-----~~~~~Pvlgin~G 95 (295)
T PRK01231 62 VCD-LVIVVGGDGSLLGAARAL-----ARHNVPVLGINRG 95 (295)
T ss_pred CCC-EEEEEeCcHHHHHHHHHh-----cCCCCCEEEEeCC
Confidence 456 456668899999887554 2457898888863
No 298
>PRK07035 short chain dehydrogenase; Provisional
Probab=24.88 E-value=1e+02 Score=25.79 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=16.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
++|.|.|+|+ -....+.+.|+++|+.|+--+
T Consensus 9 k~vlItGas~--------gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASR--------GIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCc--------HHHHHHHHHHHHCCCEEEEEe
Confidence 3455555543 233455555666666665433
No 299
>PRK08226 short chain dehydrogenase; Provisional
Probab=24.86 E-value=3.9e+02 Score=22.38 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccc
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE 84 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e 84 (230)
+.+++.|.|+++ -..+.+.+.|+++|+.++.=+.+ .-.....+.....+..+..+..+...+.+
T Consensus 5 ~~~~~lItG~s~--------giG~~la~~l~~~G~~Vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 68 (263)
T PRK08226 5 TGKTALITGALQ--------GIGEGIARVFARHGANLILLDIS-PEIEKLADELCGRGHRCTAVVADVRDPAS 68 (263)
T ss_pred CCCEEEEeCCCC--------hHHHHHHHHHHHCCCEEEEecCC-HHHHHHHHHHHHhCCceEEEECCCCCHHH
No 300
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.80 E-value=3.7e+02 Score=21.59 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=50.7
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGE 92 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e 92 (230)
-++|+|+|-|. ...+.|+..|.++|.++..--..+- -+.+.+.++.-.+..+.-..+.+.+.-.+. .
T Consensus 28 gk~v~VvGrs~--------~vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAtg~~~~i~~~~ikpG--a 94 (140)
T cd05212 28 GKKVLVVGRSG--------IVGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGSPKPEKVPTEWIKPG--A 94 (140)
T ss_pred CCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEecCCCCccCHHHcCCC--C
Confidence 35899998544 3455777788888988865543321 112223333333333211111222221111 1
Q ss_pred Eee-c-CCHHHHHHHHHhhcCeEEEecCCcccHHHHH
Q 026977 93 VRP-V-ADMHQRKAEMARHSDCFIALPGGYGTLEELL 127 (230)
Q Consensus 93 ~i~-~-~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~ 127 (230)
+++ + .++ +.-....+.+.++.=.|||+|-+.=..
T Consensus 95 ~Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a~ 130 (140)
T cd05212 95 TVINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVAM 130 (140)
T ss_pred EEEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHHH
Confidence 111 1 121 112334566888888999999877444
No 301
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=24.80 E-value=75 Score=29.30 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=32.4
Q ss_pred CcchHHHHHHHHHHHcCCCCccccCcE---EEcCCHHHHHHHHHhh
Q 026977 149 GYYNYLLTFIDKAVDDGFIKPSQRNII---VSAPNAKELVQKLEEY 191 (230)
Q Consensus 149 G~~~~l~~~l~~~~~~gfi~~~~~~~i---~~~~d~ee~~~~l~~~ 191 (230)
.+|+-+-.-+..|+.+|.|+++..+.+ ....+++|+-+.+++-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 478888888899999999999986544 6788999999988763
No 302
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=24.78 E-value=1.8e+02 Score=25.35 Aligned_cols=39 Identities=15% Similarity=0.022 Sum_probs=28.3
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 11 SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 11 ~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
++...|+|||||=++...-+...|+..-+.+...++.+|
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 455689999999988777777777777777765555443
No 303
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=24.71 E-value=1.4e+02 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL 48 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l 48 (230)
++|.|+||+...-.+-+ -++|.|+++|+.+
T Consensus 61 ~~V~VlcG~GNNGGDGl-----v~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGL-----VAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchhHH-----HHHHHHHHCCCeE
Confidence 46999998775323343 5677788888865
No 304
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=24.70 E-value=68 Score=30.77 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchHHHHHHHHHhcCCe
Q 026977 32 DAAIDLAHELVARRLDLVYGGGS----------IGLMGLVSKAVHHGGGN 71 (230)
Q Consensus 32 ~~A~~LG~~LA~~g~~lVtGGg~----------~GlM~ava~gA~~~GG~ 71 (230)
+.|+.|++.|.++|+.+|+||-. .|+-+..+..+++.-+.
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 45778888888899999998754 26667777777765443
No 305
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.66 E-value=3.6e+02 Score=21.43 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 35 IDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 35 ~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.++++.
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 34455566789999999876 446888888999999999993
No 306
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=24.58 E-value=2.8e+02 Score=26.58 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHC-----CCeEEEcCCCcc---hHHHHHHHHHh--cCCeEEEEeCCcccccccCCCCCceEeecCCHHH
Q 026977 32 DAAIDLAHELVAR-----RLDLVYGGGSIG---LMGLVSKAVHH--GGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQ 101 (230)
Q Consensus 32 ~~A~~LG~~LA~~-----g~~lVtGGg~~G---lM~ava~gA~~--~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~ 101 (230)
+.|...++.++++ +..++||+..+| ||.|++....+ .+.+|+-+.+..+. .+... .+.. ....+.+
T Consensus 124 ~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-~~~~~-~l~~--~~~~~~~ 199 (450)
T PRK14087 124 EQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-RKAVD-ILQK--THKEIEQ 199 (450)
T ss_pred HHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHH-HHHH--hhhHHHH
Confidence 3455666666663 235678876555 89888886654 35566554332221 11000 0000 0012221
Q ss_pred HHHHHHhhcCeEEE-----ecCCcccHHHHHHHHHHHHcCCCCCcEEEE
Q 026977 102 RKAEMARHSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 145 (230)
Q Consensus 102 Rk~~m~~~sDa~I~-----lPGG~GTL~El~~~~t~~qlg~~~kPivll 145 (230)
.+. .....|++|+ +.|--.|.+|+|.++...+ ..++++++.
T Consensus 200 ~~~-~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIlt 245 (450)
T PRK14087 200 FKN-EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFS 245 (450)
T ss_pred HHH-HhccCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEE
Confidence 111 2356787665 3555678899998875543 346777775
No 307
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=24.47 E-value=1.6e+02 Score=24.80 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=16.2
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 16 VCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 16 V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|+|...+. .++-+.+....+-+.+.++|+.++
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~ 33 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVD 33 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEE
Confidence 55555332 234454445555555555666554
No 308
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.43 E-value=2.9e+02 Score=20.25 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=51.5
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecCCc--ccHHH
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGY--GTLEE 125 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~--GTL~E 125 (230)
||-||-. ......-+-+.+.|+..+-.-+.. . ......+-.-.+..+|++|++-+=+ .+...
T Consensus 3 liVGG~~-~~~~~~~~~~~~~G~~~~~hg~~~----~-----------~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 3 LIVGGRE-DRERRYKRILEKYGGKLIHHGRDG----G-----------DEKKASRLPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred EEEcCCc-ccHHHHHHHHHHcCCEEEEEecCC----C-----------CccchhHHHHhcCCCCEEEEEeCCcChHHHHH
Confidence 4455544 556666666666777766551000 0 0112223344567889999998744 34444
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHH
Q 026977 126 LLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDK 160 (230)
Q Consensus 126 l~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~ 160 (230)
+-...- .+++|++..+.. -|+.+...|+.
T Consensus 67 vk~~ak-----k~~ip~~~~~~~-~~~~l~~~l~~ 95 (97)
T PF10087_consen 67 VKKAAK-----KYGIPIIYSRSR-GVSSLERALER 95 (97)
T ss_pred HHHHHH-----HcCCcEEEECCC-CHHHHHHHHHh
Confidence 443332 468999999865 36666665543
No 309
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.37 E-value=1.1e+02 Score=25.53 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=7.0
Q ss_pred cCeEEEecCCc
Q 026977 110 SDCFIALPGGY 120 (230)
Q Consensus 110 sDa~I~lPGG~ 120 (230)
-|++|-..|..
T Consensus 81 ~d~li~~ag~~ 91 (248)
T TIGR01832 81 IDILVNNAGII 91 (248)
T ss_pred CCEEEECCCCC
Confidence 57777766643
No 310
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=24.33 E-value=1.3e+02 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYG 51 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtG 51 (230)
+++|.|+|+|+ ...+.+.+.|.++||.|+.-
T Consensus 17 ~~~ilItGasG--------~iG~~l~~~L~~~g~~V~~~ 47 (251)
T PLN00141 17 TKTVFVAGATG--------RTGKRIVEQLLAKGFAVKAG 47 (251)
T ss_pred CCeEEEECCCc--------HHHHHHHHHHHhCCCEEEEE
Confidence 56888888666 34456666677788887543
No 311
>PRK08105 flavodoxin; Provisional
Probab=24.32 E-value=1.9e+02 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=14.5
Q ss_pred EEcCCC------cchHHHHHHHHHhcCCeEEE
Q 026977 49 VYGGGS------IGLMGLVSKAVHHGGGNVIG 74 (230)
Q Consensus 49 VtGGg~------~GlM~ava~gA~~~GG~viG 74 (230)
|.|-|. .+.+..+.+-..+.|+..++
T Consensus 89 vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 89 VIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred EEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 667665 23444444444456777666
No 312
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=24.30 E-value=4.3e+02 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
++|.|.|+++ -..+.+++.|+++|+.++--+
T Consensus 16 k~vlItGas~--------gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 16 KVAIVTGGNT--------GLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEe
Confidence 4566665544 234455566666777665433
No 313
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=24.30 E-value=1.6e+02 Score=25.49 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCe-EEEEeCCcccccccCC-CCCceEeecCCHHHHHHHHH--hhcCeEEEecCCc
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGN-VIGIIPRTLMNKEITG-ETVGEVRPVADMHQRKAEMA--RHSDCFIALPGGY 120 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~-viGI~P~~~~~~e~~~-~~~~e~i~~~~m~~Rk~~m~--~~sDa~I~lPGG~ 120 (230)
...+|+|+|+.|++- +.-|+..|.. ++.+-.... ..+... -..+..+......+.-..+. ...|.++=..|+.
T Consensus 122 ~~VlV~G~G~vG~~~--~~~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLTA--AAAAAAAGAARVVAADPSPD-RRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCCEEEEECCCHH-HHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 467899887777663 4456677776 666622111 111110 11122222222211111111 1368888888877
Q ss_pred ccHHHHHHHH
Q 026977 121 GTLEELLEVI 130 (230)
Q Consensus 121 GTL~El~~~~ 130 (230)
.++++....+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7888776665
No 314
>PRK07890 short chain dehydrogenase; Provisional
Probab=24.24 E-value=4.2e+02 Score=22.03 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV 93 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~ 93 (230)
++|.|.|+++ -..+.+++.|+++|+.++..+....-.+.........+.++..+ .
T Consensus 6 k~vlItGa~~--------~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------------~ 60 (258)
T PRK07890 6 KVVVVSGVGP--------GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV-----------------P 60 (258)
T ss_pred CEEEEECCCC--------cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE-----------------e
Q ss_pred eecCCHHHHHHHHHh------hcCeEEEecCCcc
Q 026977 94 RPVADMHQRKAEMAR------HSDCFIALPGGYG 121 (230)
Q Consensus 94 i~~~~m~~Rk~~m~~------~sDa~I~lPGG~G 121 (230)
....+....+..+.. ..|++|-..|..+
T Consensus 61 ~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag~~~ 94 (258)
T PRK07890 61 TDITDEDQCANLVALALERFGRVDALVNNAFRVP 94 (258)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCccEEEECCccCC
No 315
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=24.23 E-value=1.2e+02 Score=23.80 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCC-CcchHHHHHHHHHhcCC
Q 026977 31 SDAAIDLAHELVA----RRLDLV-Y--GGG-SIGLMGLVSKAVHHGGG 70 (230)
Q Consensus 31 ~~~A~~LG~~LA~----~g~~lV-t--GGg-~~GlM~ava~gA~~~GG 70 (230)
.+.|+.+|+.||+ .|+.=| + ||. ..|-+.|+++++.++|-
T Consensus 68 ~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 68 KEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 3568888888887 354322 2 331 25899999999999873
No 316
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=24.19 E-value=3.2e+02 Score=22.95 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=34.3
Q ss_pred CeEEEcCCCcchHHH-HHHHHHhcCCeEEEEeCCcccccccCCCCCceEeec---CCHHHHHHHHHhhcCeEEEe
Q 026977 46 LDLVYGGGSIGLMGL-VSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPV---ADMHQRKAEMARHSDCFIAL 116 (230)
Q Consensus 46 ~~lVtGGg~~GlM~a-va~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~---~~m~~Rk~~m~~~sDa~I~l 116 (230)
.+.++=-.. |-|+. +++.+...|..|+=|.-... ...++..+.+.+ .+|.+.-......+|++|..
T Consensus 20 VR~ItN~SS-G~~G~~lA~~~~~~Ga~V~li~g~~~----~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 20 VRFITNRSS-GKMGAALAEEAARRGAEVTLIHGPSS----LPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred ceEecCCCc-CHHHHHHHHHHHHCCCEEEEEecCcc----ccccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 445555554 99985 56677788989888853321 112323355544 34555555555667777653
No 317
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=24.17 E-value=5.4e+02 Score=23.30 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHh-cCCeEEEEeCCcccccccCCCCCceEeec----CCHHHH
Q 026977 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHH-GGGNVIGIIPRTLMNKEITGETVGEVRPV----ADMHQR 102 (230)
Q Consensus 28 ~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~-~GG~viGI~P~~~~~~e~~~~~~~e~i~~----~~m~~R 102 (230)
+.-.+.+.++...|.+++..++-=+++ =.-..+-+...+ -.-.|+||+|..--..+...+...-++-+ .+-..|
T Consensus 50 e~I~~~~~~i~~~l~~~~ik~lVIACN-TASa~al~~LR~~~~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~y~ 128 (269)
T COG0796 50 EEIRERTLEIVDFLLERGIKALVIACN-TASAVALEDLREKFDIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNAYR 128 (269)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecc-hHHHHHHHHHHHhCCCCEEEeccchHHHHHhccCCeEEEEeccchhccHHHH
Confidence 455677889999999999999888888 222222222222 35679999987643333334432222222 233456
Q ss_pred HHHHHhhcCeEEEecCCcccHHHHH-----------HHHHHHHcC---CCCCcEEEEecCCcchHHHHHHHHHHHcCCCC
Q 026977 103 KAEMARHSDCFIALPGGYGTLEELL-----------EVITWAQLG---IHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIK 168 (230)
Q Consensus 103 k~~m~~~sDa~I~lPGG~GTL~El~-----------~~~t~~qlg---~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~ 168 (230)
+.+-.-.+|+-|-.-|..+= -++. +++. .++- ..+.-.++|+-. +|.-|...++....
T Consensus 129 ~~i~~~~~~~~V~~la~p~l-V~lvE~g~~~~~~~~~~l~-~~l~~~~~~~~DtlVLGCT-HyPll~~~i~~~~~----- 200 (269)
T COG0796 129 DLIARFAPDCEVESLACPEL-VPLVEEGIRGGPVALEVLK-EYLPPLQEAGPDTLVLGCT-HYPLLKPEIQQVLG----- 200 (269)
T ss_pred HHHHHhCCCCEEEEecCcch-HHHHhcccccCHHHHHHHH-HHhcchhccCCCEEEEeCc-CcHHHHHHHHHHhC-----
Confidence 66555577877766553221 1111 1111 1111 223446777655 77777776666543
Q ss_pred ccccCcEEEcCCHHHHHHHHHhhcCCC
Q 026977 169 PSQRNIIVSAPNAKELVQKLEEYVPVH 195 (230)
Q Consensus 169 ~~~~~~i~~~~d~ee~~~~l~~~~~~~ 195 (230)
+.+.+.|+.+++.+.+.++....
T Consensus 201 ----~~v~lids~~~~a~~~~~~L~~~ 223 (269)
T COG0796 201 ----EHVALIDSGAETARRLARLLSPE 223 (269)
T ss_pred ----CCceEeCCHHHHHHHHHHHhChh
Confidence 35788999999999998876553
No 318
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=24.14 E-value=3e+02 Score=23.45 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHc-CCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 026977 101 QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAP 179 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~ql-g~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 179 (230)
++.....+.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-+- + ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~~---------------~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTPL---------------S--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCCC---------------C--CcCCEEEEC
Confidence 34444557899888865 334433 22222221 23578999999763211 1 223467778
Q ss_pred CHHHHHHHH
Q 026977 180 NAKELVQKL 188 (230)
Q Consensus 180 d~ee~~~~l 188 (230)
+.+|++..|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899988765
No 319
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=24.13 E-value=2.2e+02 Score=25.43 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHC-CCeEEEcCCCcchHHHHHHHHHhcCCeEE
Q 026977 28 NCYSDAAIDLAHELVAR-RLDLVYGGGSIGLMGLVSKAVHHGGGNVI 73 (230)
Q Consensus 28 ~~~~~~A~~LG~~LA~~-g~~lVtGGg~~GlM~ava~gA~~~GG~vi 73 (230)
..|.+.|-.+-..+|.+ |..|..|--+ |-+.-+.+.|.+++|..+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~-~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNN-GFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCc-chHHHHHHHHHHhcCcee
Confidence 58899999999999987 5555555554 999999999999999755
No 320
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=24.13 E-value=3.9e+02 Score=21.69 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 151 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~ 151 (230)
+.+...+.|+|+||. |..++++.++-......=+.+.++..+.+|
T Consensus 16 ~~~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~ 60 (169)
T cd00458 16 LEEKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERY 60 (169)
T ss_pred HHhCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECcccc
Confidence 335567888899885 666677666532211011456666666554
No 321
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.10 E-value=1.7e+02 Score=24.37 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
.+-...|++|+.|--...+.++.+-+.- .+.||++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 3455689999998888777777666542 47899998765
No 322
>PRK08339 short chain dehydrogenase; Provisional
Probab=23.87 E-value=1.1e+02 Score=26.23 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=6.7
Q ss_pred cCeEEEecCC
Q 026977 110 SDCFIALPGG 119 (230)
Q Consensus 110 sDa~I~lPGG 119 (230)
-|.+|...|.
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 5777777664
No 323
>PRK13059 putative lipid kinase; Reviewed
Probab=23.86 E-value=1.7e+02 Score=26.08 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=27.4
Q ss_pred HHHCCC-eEEEcCCCcchHHHHHHHHHhcC-CeEEEEeCCc
Q 026977 41 LVARRL-DLVYGGGSIGLMGLVSKAVHHGG-GNVIGIIPRT 79 (230)
Q Consensus 41 LA~~g~-~lVtGGg~~GlM~ava~gA~~~G-G~viGI~P~~ 79 (230)
.++.++ .||..||. |--.+++.+....+ ...+||+|..
T Consensus 52 ~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 52 DIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECCC
Confidence 344443 55667777 99999999998765 4569999953
No 324
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.85 E-value=2.1e+02 Score=27.43 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccC-CCCCceEeecCCHHHHHHHHHhhcCeEEEecCCcccH
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEIT-GETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTL 123 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~-~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL 123 (230)
...+|.|.|+.|+. ++..++..|.+|+.+-+.... .+.. ...+ +. ..+. . .+..+|.+|-..|..+++
T Consensus 203 ktVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~-~~---~~~~---e-~v~~aDVVI~atG~~~~i 271 (413)
T cd00401 203 KVAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGY-EV---MTME---E-AVKEGDIFVTTTGNKDII 271 (413)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCC-EE---ccHH---H-HHcCCCEEEECCCCHHHH
Confidence 35668999988775 445567778888776332211 0111 1111 11 1221 1 235678888887777666
Q ss_pred HH
Q 026977 124 EE 125 (230)
Q Consensus 124 ~E 125 (230)
++
T Consensus 272 ~~ 273 (413)
T cd00401 272 TG 273 (413)
T ss_pred HH
Confidence 64
No 325
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=23.81 E-value=1.6e+02 Score=27.66 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=51.4
Q ss_pred eEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCC------------------cchHHHHHHHHHHHcCCCCccccC
Q 026977 112 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG------------------YYNYLLTFIDKAVDDGFIKPSQRN 173 (230)
Q Consensus 112 a~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G------------------~~~~l~~~l~~~~~~gfi~~~~~~ 173 (230)
.+|+|+|-.|||. +. ...|....|+..+--++ +-+..++||+++.+..=+ ..-
T Consensus 5 gviilGgahgtla-----lA-RSfg~~~vpv~~ls~d~plPt~Sr~vr~t~~w~gphd~gaiafLrd~Aekhgl---kg~ 75 (415)
T COG3919 5 GVIILGGAHGTLA-----LA-RSFGEEFVPVLALSADGPLPTYSRIVRVTTHWNGPHDEGAIAFLRDFAEKHGL---KGY 75 (415)
T ss_pred ceEEEcccchhHH-----HH-HhhccccceEEEEecCCCCcchhhhheeeeccCCCCcccHHHHHHHHHhhcCc---Cce
Confidence 5899999999976 21 34555568988874322 223678888888765311 112
Q ss_pred cEEEcCCHHH-----HHHHHHhhcCCCccccccCchhhhhh
Q 026977 174 IIVSAPNAKE-----LVQKLEEYVPVHDGVIAKASWEVDKQ 209 (230)
Q Consensus 174 ~i~~~~d~ee-----~~~~l~~~~~~~~~~~~~~~~~~~~~ 209 (230)
++.-+.|++- -.+.|..++..+.-.|+.++|.-.|.
T Consensus 76 LLva~GDgev~lvSq~reeLSa~f~v~lp~w~~l~wlceKP 116 (415)
T COG3919 76 LLVACGDGEVLLVSQYREELSAFFEVPLPDWALLRWLCEKP 116 (415)
T ss_pred EEEecCCceeeehHhhHHHHHHHhcCCCCcHHHHHHHhhCc
Confidence 2333444332 22344444444444677788866654
No 326
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=23.65 E-value=2e+02 Score=27.53 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHCCCeE---EEcCCCcchHHHHHHHHHhcCCeEEEEeCCc
Q 026977 28 NCYSDAAIDLAHELVARRLDL---VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRT 79 (230)
Q Consensus 28 ~~~~~~A~~LG~~LA~~g~~l---VtGGg~~GlM~ava~gA~~~GG~viGI~P~~ 79 (230)
+-....+..|-..+-++--+| |||+|.+-+|=.+.+.|++.||+|.=..|..
T Consensus 100 ~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRv 154 (441)
T COG4098 100 PGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRV 154 (441)
T ss_pred hhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcc
Confidence 445566778888888765555 7899999999999999999999987777754
No 327
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=23.60 E-value=3e+02 Score=23.16 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCH-H
Q 026977 104 AEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNA-K 182 (230)
Q Consensus 104 ~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~-e 182 (230)
..+....+++|+.+||+=.-+|-...+.- ...++.|+.+ ++.+++ .++.+....+.-..++ +
T Consensus 66 ~~l~~~~~~ViaTGGG~v~~~enr~~l~~------~g~vv~L~~~--~e~l~~---------Rl~~~~~RPll~~~~~~~ 128 (172)
T COG0703 66 KELLEEDNAVIATGGGAVLSEENRNLLKK------RGIVVYLDAP--FETLYE---------RLQRDRKRPLLQTEDPRE 128 (172)
T ss_pred HHHhhcCCeEEECCCccccCHHHHHHHHh------CCeEEEEeCC--HHHHHH---------HhccccCCCcccCCChHH
Q ss_pred HHHHHHHhhcC
Q 026977 183 ELVQKLEEYVP 193 (230)
Q Consensus 183 e~~~~l~~~~~ 193 (230)
++-+.+.+-+|
T Consensus 129 ~l~~L~~~R~~ 139 (172)
T COG0703 129 ELEELLEERQP 139 (172)
T ss_pred HHHHHHHHHHH
No 328
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.56 E-value=1.2e+02 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=6.5
Q ss_pred HHHHHHHHCCCeEE
Q 026977 36 DLAHELVARRLDLV 49 (230)
Q Consensus 36 ~LG~~LA~~g~~lV 49 (230)
.+++.|+++|+.++
T Consensus 20 ~~a~~l~~~G~~vi 33 (253)
T PRK08217 20 AMAEYLAQKGAKLA 33 (253)
T ss_pred HHHHHHHHCCCEEE
Confidence 34444444555443
No 329
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=23.53 E-value=3.3e+02 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCeEEEecC--CcccHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 101 QRKAEMARHSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~lPG--G~GTL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
+.-..+...||++|.... +.|+ =+.|++. .++||+..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~------~g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMA------AGLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHH------cCCcEEEeCCC
Confidence 344556778998775432 3332 2455554 39999987764
No 330
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.42 E-value=2.2e+02 Score=26.58 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=16.5
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCeEEEEeC
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGGNVIGIIP 77 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG~viGI~P 77 (230)
.+|+|+|+.|+ ++++...+.|-.|+++-+
T Consensus 8 v~iiG~g~~G~--~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 8 VLVVGAGVSGL--ALAKFLKKLGAKVILTDE 36 (450)
T ss_pred EEEECCCHHHH--HHHHHHHHCCCEEEEEeC
Confidence 35566666443 555556666666666543
No 331
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.33 E-value=4.4e+02 Score=21.98 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCc
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~ 91 (230)
+.+++.|.|+|+ -....+.+.|+++|+.++.-+....=-..+.....+.++.+..+..+...+.+
T Consensus 5 ~~k~~lItGas~--------giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------- 69 (254)
T PRK07478 5 NGKVAIITGASS--------GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAY------- 69 (254)
T ss_pred CCCEEEEeCCCC--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHH-------
Q ss_pred eEeecCCHHHHHHHHHhhcCeEEEecCCcc--------cHHHHHHHHHHHHcC
Q 026977 92 EVRPVADMHQRKAEMARHSDCFIALPGGYG--------TLEELLEVITWAQLG 136 (230)
Q Consensus 92 e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~G--------TL~El~~~~t~~qlg 136 (230)
...+.+.-..-...-|++|-..|-.+ +.+++-..+..+.++
T Consensus 70 ----~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~ 118 (254)
T PRK07478 70 ----AKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTS 118 (254)
T ss_pred ----HHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHH
No 332
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=23.33 E-value=63 Score=26.54 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 11 SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 11 ~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
.+.++|.|+||+.. .- -.+..++|.|+++|+.+.-
T Consensus 23 ~~~~~v~il~G~Gn----NG-gDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN----NG-GDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH----HH-HHHHHHHHHHHHTTCEEEE
T ss_pred cCCCeEEEEECCCC----Ch-HHHHHHHHHHHHCCCeEEE
Confidence 44567888887752 11 2344677778888888743
No 333
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=23.29 E-value=2.3e+02 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.7
Q ss_pred hhcCeEEEecCCc
Q 026977 108 RHSDCFIALPGGY 120 (230)
Q Consensus 108 ~~sDa~I~lPGG~ 120 (230)
..+|++|+++||.
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 4689999999975
No 334
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=23.24 E-value=2.7e+02 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCC
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPR 78 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~ 78 (230)
--.+|+||.. -|-+++.+.........|+|+.+
T Consensus 52 E~DvVFGGee-KL~eaI~ea~e~y~P~lI~VvTT 84 (352)
T TIGR03282 52 ENDFVFGASE-KLVKVIRYAEEKFKPELIGVVGT 84 (352)
T ss_pred CCceEeCcHH-HHHHHHHHHHHhcCCCEEEEECC
Confidence 3467788776 77777777666667777777644
No 335
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.22 E-value=2.1e+02 Score=26.88 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=11.0
Q ss_pred hhcCeEEEecCCc
Q 026977 108 RHSDCFIALPGGY 120 (230)
Q Consensus 108 ~~sDa~I~lPGG~ 120 (230)
..+|++|+++||+
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4689999999975
No 336
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=23.19 E-value=3.6e+02 Score=21.39 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=33.3
Q ss_pred ceEEEEcCCC--CCCChHHHHHHHHHHHHHHHCCCeEEE-----cCCCcchHHHHHH
Q 026977 14 KRVCVFCGSS--TGKRNCYSDAAIDLAHELVARRLDLVY-----GGGSIGLMGLVSK 63 (230)
Q Consensus 14 ~~V~VfggS~--~~~~~~~~~~A~~LG~~LA~~g~~lVt-----GGg~~GlM~ava~ 63 (230)
+.|.|...+. ......-.+..++++++|.++|..+-. +.+. |+...++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 3466655555 222356668889999999999988633 5555 88877654
No 337
>PRK06443 chorismate mutase; Validated
Probab=23.10 E-value=1.4e+02 Score=25.41 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEE
Q 026977 29 CYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIG 74 (230)
Q Consensus 29 ~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viG 74 (230)
.|...|+.||..+...||.++- . -.....-.|+..+||+++=
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i---~-~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYI---E-DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEe---c-cCchHHHHhhhhcCCeEec
Confidence 4778999999999999999973 2 4778888899999998753
No 338
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=23.00 E-value=2.1e+02 Score=23.52 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=24.1
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
++.|+|.+ ...+..... .|..|+..||++|..++
T Consensus 17 ~kvI~v~s-~kgG~GKTt--~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 17 IKVLLITS-VKPGEGKST--TSANIAVAFAQAGYKTL 50 (204)
T ss_pred CcEEEEec-CCCCCCHHH--HHHHHHHHHHhCCCeEE
Confidence 56677764 555544443 68889999999998766
No 339
>PRK09291 short chain dehydrogenase; Provisional
Probab=22.95 E-value=1.2e+02 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGG 53 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg 53 (230)
++|.|.|+++ -....+.+.|+++|+.++....
T Consensus 3 ~~vlVtGasg--------~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGS--------GFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEeC
Confidence 3677887665 2345667777788888876544
No 340
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.85 E-value=1.4e+02 Score=25.31 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred ccccccCcCCcceEEEEcCC--CCCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 3 MEGKIQKNSRFKRVCVFCGS--STGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 3 ~~~~~~~~~~~~~V~VfggS--~~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
|.|++.. +++.|-|+| + -..+.+++.|+++|+.|+
T Consensus 1 ~~~~l~~----k~~lItGas~~~--------gIG~a~a~~la~~G~~Vi 37 (252)
T PRK06079 1 MSGILSG----KKIVVMGVANKR--------SIAWGCAQAIKDQGATVI 37 (252)
T ss_pred CccccCC----CEEEEeCCCCCC--------chHHHHHHHHHHCCCEEE
No 341
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=22.83 E-value=4.7e+02 Score=22.06 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=22.0
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
.|++|++-=..-+++++-.+... ...+|++++|+
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~----~~~rpvvl~Np 131 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEA----AGGRPVVLLNP 131 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHh----cCCCeEEEEec
Confidence 57776664444557777665543 12489999996
No 342
>PRK07062 short chain dehydrogenase; Provisional
Probab=22.71 E-value=1.2e+02 Score=25.73 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=9.3
Q ss_pred HHHHHHHHHCCCeEEEc
Q 026977 35 IDLAHELVARRLDLVYG 51 (230)
Q Consensus 35 ~~LG~~LA~~g~~lVtG 51 (230)
+++++.|+++|+.|+.-
T Consensus 22 ~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 22 LATVELLLEAGASVAIC 38 (265)
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 34555555666665543
No 343
>PRK08177 short chain dehydrogenase; Provisional
Probab=22.65 E-value=1.4e+02 Score=24.62 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
++|.|.|+++ -....+.+.|+++|+.|+.-+
T Consensus 2 k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASR--------GLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHhCCCEEEEEe
Confidence 4566776654 234456666677777766433
No 344
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=22.64 E-value=2.1e+02 Score=24.64 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=24.1
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCCcchHHH
Q 026977 17 CVFCGSSTGKRNCYSDAAIDLAHELVARR--LDLVYGGGSIGLMGL 60 (230)
Q Consensus 17 ~VfggS~~~~~~~~~~~A~~LG~~LA~~g--~~lVtGGg~~GlM~a 60 (230)
.=||||...+.+...+.++.+..+. +.| ..||.||+. +....
T Consensus 4 iK~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g-~~~~~ 47 (239)
T cd04261 4 QKFGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG-GTTDE 47 (239)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC-chhHH
Confidence 3378888754445555666666543 444 456788754 44433
No 345
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=22.60 E-value=4.6e+02 Score=21.88 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
+++-|.|+|+ ...+.+.+.|+++|+.++.-+..
T Consensus 10 k~~lItGas~--------giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 10 KNILITGSAQ--------GIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred CEEEEECCCC--------hHHHHHHHHHHHcCCEEEEEcCC
Confidence 3566666554 24445666667777777654443
No 346
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.60 E-value=4.4e+02 Score=21.72 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=20.9
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGG 53 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg 53 (230)
+++++.|.|+++ .....+.+.|+++|+.++.-+.
T Consensus 5 ~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITGASS--------GIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeC
Confidence 456777777654 2445666666777777654443
No 347
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=22.60 E-value=4.3e+02 Score=22.01 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
..++|.|.|+++ ...+.+++.|+++|+.|+.-+....--.+......+.++.+..+
T Consensus 10 ~~k~ilItGas~--------~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 65 (256)
T PRK06124 10 AGQVALVTGSAR--------GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEAL 65 (256)
T ss_pred CCCEEEEECCCc--------hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEE
No 348
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=22.57 E-value=1.9e+02 Score=27.39 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCC-eEEEEeCCcccccccCCCCCceEe-------ecCCHHHHHHHHHhhcCeEEEecCCcccHHHHH
Q 026977 58 MGLVSKAVHHGGG-NVIGIIPRTLMNKEITGETVGEVR-------PVADMHQRKAEMARHSDCFIALPGGYGTLEELL 127 (230)
Q Consensus 58 M~ava~gA~~~GG-~viGI~P~~~~~~e~~~~~~~e~i-------~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~ 127 (230)
-..+.+.-.+.|- -+.||++....+-+.+..--.+.+ +.....++...+++.||++|..+-=+|+=.++.
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~ 356 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVI 356 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCch
Confidence 3345555555553 457887755433222111101122 123446888889999999999766566544443
No 349
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=22.53 E-value=1.5e+02 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=21.8
Q ss_pred hcCeEEEecC--CcccHH-HHHHHHHHHHcCCCCCcEEEEecC
Q 026977 109 HSDCFIALPG--GYGTLE-ELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 109 ~sDa~I~lPG--G~GTL~-El~~~~t~~qlg~~~kPivlln~~ 148 (230)
.+|++|+--. |.|.+. ++...+.. +...+|.+.++...
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~~--l~~~~k~~avfgtg 90 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIAE--LGYKPSNVAIFGTG 90 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHHH--hcccCCEEEEEEcC
Confidence 3676666543 566654 45544433 33357888888653
No 350
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.50 E-value=2.5e+02 Score=24.38 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHhhcCeEEEecC
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPG 118 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPG 118 (230)
.++|.|.+--.-.++.-+++.|..+|+|.-...-+ +.+.||.+|.+|+
T Consensus 92 aiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss-----------------------Lak~aDvvl~ip~ 139 (202)
T COG0794 92 AISGSGETKELLNLAPKAKRLGAKLIAITSNPDSS-----------------------LAKAADVVLVIPV 139 (202)
T ss_pred EEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh-----------------------HHHhcCeEEEccC
No 351
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=22.49 E-value=2.2e+02 Score=25.85 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=25.8
Q ss_pred hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 108 ~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
+..|+||++= |.-||+|....+.+. +...+||||+-+
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~-l~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLL-LDNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHH-EES-SSEEEEE-
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHH-hcCCCCCEEEeC
Confidence 4478988775 589999999888753 223379999975
No 352
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=22.38 E-value=5.3e+02 Score=22.54 Aligned_cols=125 Identities=23% Similarity=0.292 Sum_probs=62.2
Q ss_pred EEEcCCCcchHHHH---HHHHHhcC-CeEEEEeCCcccccc-cCCCCCceEeec-CCH--HHHHHHHHhhcCeEEEecCC
Q 026977 48 LVYGGGSIGLMGLV---SKAVHHGG-GNVIGIIPRTLMNKE-ITGETVGEVRPV-ADM--HQRKAEMARHSDCFIALPGG 119 (230)
Q Consensus 48 lVtGGg~~GlM~av---a~gA~~~G-G~viGI~P~~~~~~e-~~~~~~~e~i~~-~~m--~~Rk~~m~~~sDa~I~lPGG 119 (230)
+|-||.. +..+|+ +++|+..| |.|.-+.|....+.- ...+ |+++. -.. ...-....+..|++++=||
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~P---e~m~~~~~~~~~~~~~~~~~~~~av~iGPG- 76 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSP---EAMVSPLPSDEDVEILELLEKADAVVIGPG- 76 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTT---TSEEEETTHCCHHHHHHHHCH-SEEEE-TT-
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCc---eeEEecccchhhhhhHhhhccCCEEEeecC-
Confidence 5667766 777765 45555555 677777765432110 0111 22221 111 1122334577899888887
Q ss_pred cccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 026977 120 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEY 191 (230)
Q Consensus 120 ~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 191 (230)
.|+-++..+.+.. +-...+| ++++-++.|- +.... ......++++..+-|+-+.+...
T Consensus 77 lg~~~~~~~~~~~--~~~~~~p-~VlDADaL~~--------l~~~~---~~~~~~~IlTPH~gE~~rL~~~~ 134 (242)
T PF01256_consen 77 LGRDEETEELLEE--LLESDKP-LVLDADALNL--------LAENP---KKRNAPVILTPHPGEFARLLGKS 134 (242)
T ss_dssp -SSSHHHHHHHHH--HHHHCST-EEEECHHHHC--------HHHCC---CCSSSCEEEE-BHHHHHHHHTTT
T ss_pred CCCchhhHHHHHH--HHhhcce-EEEehHHHHH--------HHhcc---ccCCCCEEECCCHHHHHHHhCCc
Confidence 3444443332211 1123678 4567654321 22211 34456788899999998887654
No 353
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=22.34 E-value=87 Score=27.08 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKR-NCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~-~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
++|+|+.+|-...+ -+..+ +..-=..|-+.|+.+..=+
T Consensus 2 kkVlills~~~~~dG~e~~E-~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHE-AVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CEEEEEEccCCCCCCEehhH-HHHHHHHHHHCCCEEEEEe
Confidence 57888875332211 11112 2233455777898886643
No 354
>PRK07023 short chain dehydrogenase; Provisional
Probab=22.30 E-value=1.4e+02 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY 50 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt 50 (230)
|++|.|.|+++ -..+.+.+.|+++|+.++.
T Consensus 1 ~~~vlItGasg--------giG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSR--------GLGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCc--------chHHHHHHHHHhCCCEEEE
No 355
>PRK08303 short chain dehydrogenase; Provisional
Probab=22.26 E-value=1.2e+02 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.135 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
+++.|.|+|+. ..+.+++.|++.|+.|+.-+
T Consensus 9 k~~lITGgs~G--------IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATRG--------AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 35666665541 23455566666777765543
No 356
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.06 E-value=4.2e+02 Score=22.78 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=63.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccc--cCCC
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL--VYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKE--ITGE 88 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l--VtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e--~~~~ 88 (230)
.+.|.|+=+.. .+.+.++.+.|.+.|+.+ ||=-.+ +..+++.+-..+.....||.=. .+.+.+ ....
T Consensus 4 ~~vv~Vir~~~-------~~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAGT-Vl~~e~a~~ai~ 74 (201)
T PRK06015 4 QPVIPVLLIDD-------VEHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAGT-ILNAKQFEDAAK 74 (201)
T ss_pred CCEEEEEEcCC-------HHHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeEe-CcCHHHHHHHHH
Confidence 34677764221 256778889999988887 444456 7788877766666677788721 111111 0001
Q ss_pred CCceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHH
Q 026977 89 TVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITW 132 (230)
Q Consensus 89 ~~~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~ 132 (230)
-=.+.++.+.+...-..... ..-+..+|| .-|..|+..+|.+
T Consensus 75 aGA~FivSP~~~~~vi~~a~-~~~i~~iPG-~~TptEi~~A~~~ 116 (201)
T PRK06015 75 AGSRFIVSPGTTQELLAAAN-DSDVPLLPG-AATPSEVMALREE 116 (201)
T ss_pred cCCCEEECCCCCHHHHHHHH-HcCCCEeCC-CCCHHHHHHHHHC
Confidence 11245566665432222222 334677786 6699999998854
No 357
>PRK12367 short chain dehydrogenase; Provisional
Probab=22.02 E-value=1.3e+02 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=21.3
Q ss_pred CeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 46 LDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 46 ~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
..|||||+. |+=.++++...+.|..|+.+-
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 567777776 777777777777777776653
No 358
>PRK08589 short chain dehydrogenase; Validated
Probab=21.98 E-value=1.3e+02 Score=25.93 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
+++.|.|+++. ..+.+++.|+++|+.++.-+.+ .--........+.++++..+
T Consensus 7 k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 46777776552 3456777778888888765544 21122222233345555544
No 359
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=21.86 E-value=3.4e+02 Score=25.75 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHC-----CCeEEEcCCCcc---hHHHHHHHHHhc--CCeEEEE
Q 026977 33 AAIDLAHELVAR-----RLDLVYGGGSIG---LMGLVSKAVHHG--GGNVIGI 75 (230)
Q Consensus 33 ~A~~LG~~LA~~-----g~~lVtGGg~~G---lM~ava~gA~~~--GG~viGI 75 (230)
.|...++.++++ +..++||...+| |+.|++..+.+. +..++-+
T Consensus 132 ~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 132 LAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred HHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 466666666653 345788876666 899999988876 4455544
No 360
>PRK08589 short chain dehydrogenase; Validated
Probab=21.75 E-value=4.9e+02 Score=22.22 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=27.1
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
...|||||.. |+=.++++...+.|-+|+.+-
T Consensus 7 k~vlItGas~-gIG~aia~~l~~~G~~vi~~~ 37 (272)
T PRK08589 7 KVAVITGAST-GIGQASAIALAQEGAYVLAVD 37 (272)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEe
Confidence 4678999998 999999999999999988774
No 361
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.70 E-value=1.6e+02 Score=27.33 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGS 54 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~ 54 (230)
|+|.++|.++....--+......|++.|.++|+.+++=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 57899997776665566667889999999999988876655
No 362
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.69 E-value=1.2e+02 Score=27.55 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=22.3
Q ss_pred eEEEecCCcccHHHHHHHHHHHHcCCCCCc-EEEEe
Q 026977 112 CFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLLN 146 (230)
Q Consensus 112 a~I~lPGG~GTL~El~~~~t~~qlg~~~kP-ivlln 146 (230)
=.|+..||=||++|+...+. .++.| +.++-
T Consensus 60 D~via~GGDGTv~evingl~-----~~~~~~LgilP 90 (301)
T COG1597 60 DTVIAAGGDGTVNEVANGLA-----GTDDPPLGILP 90 (301)
T ss_pred CEEEEecCcchHHHHHHHHh-----cCCCCceEEec
Confidence 36677899999999998774 34566 77774
No 363
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.50 E-value=1.1e+02 Score=26.48 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 100 HQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 100 ~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
.++....++.+|.+|++ ||--.+.-++.+.+...++.|++++|.+
T Consensus 162 ~~~~~~~~~~~Dlllvi----GTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 162 IEEAIQAIEKADLLVIV----GTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHHhcCCEEEEE----CcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 35566667789977773 3433343333333332368899999975
No 364
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.37 E-value=2.1e+02 Score=24.05 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
.....|++|+.|....++++....+. ..+.|+++++
T Consensus 57 ~~~~vdgiIi~~~~~~~~~~~l~~~~-----~~~iPvv~~~ 92 (272)
T cd06300 57 IAQGVDAIIINPASPTALNPVIEEAC-----EAGIPVVSFD 92 (272)
T ss_pred HHcCCCEEEEeCCChhhhHHHHHHHH-----HCCCeEEEEe
Confidence 34456777777755444444332221 2356777665
No 365
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=21.35 E-value=5.5e+02 Score=22.31 Aligned_cols=86 Identities=21% Similarity=0.110 Sum_probs=44.4
Q ss_pred HhhcCeEEEe-cCCcccHHHHHHHHHHHHcCCCCCcEEEE-ecCCcc--hHHHHHHHHHHHc-CCCCccccCcEEE----
Q 026977 107 ARHSDCFIAL-PGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYY--NYLLTFIDKAVDD-GFIKPSQRNIIVS---- 177 (230)
Q Consensus 107 ~~~sDa~I~l-PGG~GTL~El~~~~t~~qlg~~~kPivll-n~~G~~--~~l~~~l~~~~~~-gfi~~~~~~~i~~---- 177 (230)
.+.+|+++.+ ...-+.-.+ ..+ +..+...++|++++ |..+-. +.+...+..+... +| ...+.+
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i--~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~v~~iSA~~ 148 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFV--LTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF-----KDIVPISALT 148 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHH--HHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC-----CceEEEecCC
Confidence 4679977766 333333332 111 22333457887664 653332 2333333333221 11 122322
Q ss_pred cCCHHHHHHHHHhhcCCCccccc
Q 026977 178 APNAKELVQKLEEYVPVHDGVIA 200 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~~~~~~~ 200 (230)
-...+++.+.|.++.|..+..++
T Consensus 149 g~gi~~L~~~l~~~l~~~~~~~~ 171 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGPFRYP 171 (270)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCC
Confidence 25789999999998877654444
No 366
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.31 E-value=1.9e+02 Score=24.56 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=24.2
Q ss_pred HHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 105 EMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 105 ~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
++-...|++|+.|.......+....+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444668999998876555555543332 34678888864
No 367
>PRK07283 hypothetical protein; Provisional
Probab=21.22 E-value=1.8e+02 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=21.0
Q ss_pred cCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH
Q 026977 110 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLT 156 (230)
Q Consensus 110 sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~ 156 (230)
..+-++-. .|-+|+..++ |. +..|+-+...||.+.++.
T Consensus 59 ~~Vp~~~~---~t~~eLG~a~-----Gk-~~~vvai~d~g~a~~l~~ 96 (98)
T PRK07283 59 YQVEVSTV---FSTLELSAAV-----GK-PRKVLAVTDAGFSKKMRS 96 (98)
T ss_pred cCCCEEEe---CCHHHHHHHh-----CC-CceEEEEeChhHHHHHHH
Confidence 34444433 4899998776 22 122333334577776654
No 368
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.17 E-value=3.9e+02 Score=20.52 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=28.3
Q ss_pred HhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHH
Q 026977 107 ARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVD 163 (230)
Q Consensus 107 ~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~ 163 (230)
.+.+|++|=+. -.-++.+..+.+. .+++|+++ .+.||-+.-++.++.+.+
T Consensus 65 ~~~~DVvIDfT-~p~~~~~~~~~~~-----~~g~~~Vi-GTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 65 LEEADVVIDFT-NPDAVYDNLEYAL-----KHGVPLVI-GTTGFSDEQIDELEELAK 114 (124)
T ss_dssp TTH-SEEEEES--HHHHHHHHHHHH-----HHT-EEEE-E-SSSHHHHHHHHHHHTT
T ss_pred cccCCEEEEcC-ChHHhHHHHHHHH-----hCCCCEEE-ECCCCCHHHHHHHHHHhc
Confidence 34499999887 3333333333332 35888865 577887777777776544
No 369
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=21.13 E-value=1.4e+02 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=17.6
Q ss_pred cceEEEEcCCCCCCChHHHHHHHHH
Q 026977 13 FKRVCVFCGSSTGKRNCYSDAAIDL 37 (230)
Q Consensus 13 ~~~V~VfggS~~~~~~~~~~~A~~L 37 (230)
+++|+|||||=++...-+...++++
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a 27 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEA 27 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHH
Confidence 4579999999887665565555544
No 370
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=21.12 E-value=4.9e+02 Score=21.70 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCc
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG 91 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~ 91 (230)
+.++|.|.|+++ .....+.+.|+++|+.|+.-+...---.+..+...+.|+++..+..+...+..
T Consensus 9 ~~k~vlItGa~g--------~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~------- 73 (255)
T PRK07523 9 TGRRALVTGSSQ--------GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDA------- 73 (255)
T ss_pred CCCEEEEECCcc--------hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHH-------
Q ss_pred eEeecCCHHHHHHHHHhhcCeEEEecCCcc-------cHHHHHHHHHHH
Q 026977 92 EVRPVADMHQRKAEMARHSDCFIALPGGYG-------TLEELLEVITWA 133 (230)
Q Consensus 92 e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~G-------TL~El~~~~t~~ 133 (230)
...+..+-..-...-|++|-..|... +.+++-..+..+
T Consensus 74 ----~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n 118 (255)
T PRK07523 74 ----VRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTN 118 (255)
T ss_pred ----HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHH
No 371
>PRK06139 short chain dehydrogenase; Provisional
Probab=21.04 E-value=3.8e+02 Score=24.19 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
++|.|.|+|+ -..+.+.+.|+++|+.|+.-+...--.+.+.+...+.|+.+..+
T Consensus 8 k~vlITGAs~--------GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 8 AVVVITGASS--------GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred CEEEEcCCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 4677777655 24456777778889988765543222223333334445554443
No 372
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=20.97 E-value=2.6e+02 Score=21.50 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHcCC--CCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCC--HHHHHHHHHh
Q 026977 122 TLEELLEVITWAQLGI--HDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPN--AKELVQKLEE 190 (230)
Q Consensus 122 TL~El~~~~t~~qlg~--~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d--~ee~~~~l~~ 190 (230)
+++-+..++...+-.. .-+-+.++|...+++.++..++. |++++..+.|.+.++ .+++.+++..
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~~ 146 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYIDP 146 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCCH
Confidence 3555554444444332 34788899987666666665544 567777778888887 7777776643
No 373
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.96 E-value=7.1e+02 Score=23.45 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred EcCCCcchHHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceEee--c-CCHHHHHHHHH--hhcCeEEE-ecCCcccH
Q 026977 50 YGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRP--V-ADMHQRKAEMA--RHSDCFIA-LPGGYGTL 123 (230)
Q Consensus 50 tGGg~~GlM~ava~gA~~~GG~viGI~P~~~~~~e~~~~~~~e~i~--~-~~m~~Rk~~m~--~~sDa~I~-lPGG~GTL 123 (230)
-+.|- |+.-+..+.....|+. | .|++ ++-- . +.+..=-+.+. ...|++++ ++||+.-.
T Consensus 262 i~nGa-Gl~m~t~D~i~~~gg~-----p---------aNPl-Dlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~ 325 (392)
T PRK14046 262 IVNGA-GLAMATMDMIKLAGGE-----P---------ANFL-DVGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRC 325 (392)
T ss_pred EeCCc-cHHHHHHHHHHhcCCC-----C---------cCCE-EecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCH
Confidence 34444 8888888988888875 2 1221 1110 0 11111112222 22466665 46777777
Q ss_pred HHHHHHHHHHHcC-CCCCcEEEEecCC-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 026977 124 EELLEVITWAQLG-IHDKPVGLLNVDG-YYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEY 191 (230)
Q Consensus 124 ~El~~~~t~~qlg-~~~kPivlln~~G-~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~~~l~~~ 191 (230)
+++.+.+.-..-. ..+||+++ ...| -.+...+ .+.+.| -.++..+|.+|+.+...+.
T Consensus 326 ~~vA~~Ii~a~~~~~~~kPvvv-~l~G~~~e~~~~---iL~~~G-------ipvf~~~~~~~a~~~~v~~ 384 (392)
T PRK14046 326 DWVAEGVVQAAREVGIDVPLVV-RLAGTNVEEGRK---ILAESG-------LPIITADTLAEAAEKAVEA 384 (392)
T ss_pred HHHHHHHHHHHHhcCCCCcEEE-EcCCCCHHHHHH---HHHHcC-------CCeeecCCHHHHHHHHHHH
Confidence 8888776543322 25789954 3333 2222222 233334 2378899999999988764
No 374
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=20.93 E-value=5.9e+02 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=19.9
Q ss_pred CCeEEEcCCCcchHHHHHHHHHhcCC-eEEEEe
Q 026977 45 RLDLVYGGGSIGLMGLVSKAVHHGGG-NVIGII 76 (230)
Q Consensus 45 g~~lVtGGg~~GlM~ava~gA~~~GG-~viGI~ 76 (230)
...+|+|+| ++=.++..-|+..|. +++.+.
T Consensus 174 ~~vlI~g~g--~vG~~a~q~a~~~G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAG--PIGLLTILALKAAGASKIIVSE 204 (351)
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCCEEEEEC
Confidence 466788765 444446677777887 677774
No 375
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.91 E-value=1.4e+02 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
+++.|.|+++ -..+.+++.|+++|+.++.-+
T Consensus 9 k~~lItGas~--------gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 9 KVAIITGCNT--------GLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEec
Confidence 3566666554 244466666777777776433
No 376
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=20.85 E-value=4.3e+02 Score=22.06 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=50.1
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhc-CCeEEEEeCCcccccccCCCCC
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHG-GGNVIGIIPRTLMNKEITGETV 90 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~-GG~viGI~P~~~~~~e~~~~~~ 90 (230)
..+.|+|+-+++.....--.+.=.+|.+.|.++++.++.=|++.--.++.++...+. ...++-+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAG------------- 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETT-------------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecC-------------
Confidence 345688877776532111112235788888888866655555412233343333332 112333322
Q ss_pred ceEeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEe
Q 026977 91 GEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 146 (230)
Q Consensus 91 ~e~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln 146 (230)
..++.+ -..++..||++|..-.|..=|.-. .++|++.+-
T Consensus 171 -----~~~l~e-~~ali~~a~~~I~~Dtg~~HlA~a-----------~~~p~v~lf 209 (247)
T PF01075_consen 171 -----KTSLRE-LAALISRADLVIGNDTGPMHLAAA-----------LGTPTVALF 209 (247)
T ss_dssp -----TS-HHH-HHHHHHTSSEEEEESSHHHHHHHH-----------TT--EEEEE
T ss_pred -----CCCHHH-HHHHHhcCCEEEecCChHHHHHHH-----------HhCCEEEEe
Confidence 224443 455779999999887765443321 278887764
No 377
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.85 E-value=6.9e+02 Score=23.31 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=62.6
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCCcchHHHHHHHHHhcCCeEEEEeC-CcccccccCCCCCce
Q 026977 15 RVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDL-VYGGGSIGLMGLVSKAVHHGGGNVIGIIP-RTLMNKEITGETVGE 92 (230)
Q Consensus 15 ~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~l-VtGGg~~GlM~ava~gA~~~GG~viGI~P-~~~~~~e~~~~~~~e 92 (230)
++=|.+-.+....+. ....+-++.|.+.|+.+ +|-.-. + ..++...+.|- +.|.| ..... ....+.
T Consensus 169 KlEvi~e~~~llpd~--~~~v~aa~~L~~~Gf~v~~yc~~d--~--~~a~~l~~~g~--~avmPl~~pIG---sg~gv~- 236 (326)
T PRK11840 169 KLEVLGDAKTLYPDM--VETLKATEILVKEGFQVMVYCSDD--P--IAAKRLEDAGA--VAVMPLGAPIG---SGLGIQ- 236 (326)
T ss_pred EEEEcCCCCCcccCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHhcCC--EEEeecccccc---CCCCCC-
Confidence 344555444332212 34445566777889888 665543 2 33344444444 66666 32211 011110
Q ss_pred EeecCCHHHHHHHHHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEec
Q 026977 93 VRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (230)
Q Consensus 93 ~i~~~~m~~Rk~~m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~ 147 (230)
=.+.-+.+++..+.-|++.+|+||-+....++.+ +---+++|+
T Consensus 237 ------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel------GadgVL~nS 279 (326)
T PRK11840 237 ------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL------GCDGVLMNT 279 (326)
T ss_pred ------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc------CCCEEEEcc
Confidence 1234455667789999999999999999999865 455556664
No 378
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.76 E-value=1.4e+02 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=27.1
Q ss_pred CCCeEEEcCCCcchHHHHHHHHHhcCCeEEEEe
Q 026977 44 RRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGII 76 (230)
Q Consensus 44 ~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI~ 76 (230)
....||+||+. |+=.++++...+.|-.|+.+-
T Consensus 5 ~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 5 DKRVLLTGASG-GIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEE
Confidence 34678999987 999999999999998888774
No 379
>PRK05876 short chain dehydrogenase; Provisional
Probab=20.76 E-value=4.8e+02 Score=22.49 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
+.+++-|-|+|+ -..+.+++.|+++|+.|+..+.+.--.+...+.....|..+..+
T Consensus 5 ~~k~vlVTGas~--------gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~ 60 (275)
T PRK05876 5 PGRGAVITGGAS--------GIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGV 60 (275)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
No 380
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=20.76 E-value=2.3e+02 Score=25.05 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=27.7
Q ss_pred ccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHH--CCCeEEEcCCC
Q 026977 7 IQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVA--RRLDLVYGGGS 54 (230)
Q Consensus 7 ~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~--~g~~lVtGGg~ 54 (230)
+.|...++.|-|....+......+++..+.|++.|.+ ++..||-.|+-
T Consensus 125 l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~~~~~rv~iIgSG~l 174 (268)
T cd07371 125 MRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATRDAGKRVAVLGSGGL 174 (268)
T ss_pred hcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 4566667778887544322234555666666666666 45666644443
No 381
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.75 E-value=5.6e+02 Score=22.69 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=34.2
Q ss_pred hhcCeEEE-ecCCc-ccHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 026977 108 RHSDCFIA-LPGGY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELV 185 (230)
Q Consensus 108 ~~sDa~I~-lPGG~-GTL~El~~~~t~~qlg~~~kPivlln~~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee~~ 185 (230)
-..|++|. =.|+. |+.+-+-.+.. .+.||+++..- ........++|++|++
T Consensus 196 ~~i~~lVtK~SG~~Gg~~eKi~AA~~------lgi~vivI~RP---------------------~~~~~~~~~~~~~el~ 248 (256)
T TIGR00715 196 YRIDAVVTKASGEQGGELEKVKAAEA------LGINVIRIARP---------------------QTIPGVAIFDDISQLN 248 (256)
T ss_pred cCCCEEEEcCCCCccchHHHHHHHHH------cCCcEEEEeCC---------------------CCCCCCccCCCHHHHH
Confidence 34566665 36787 55555544443 37888888532 1111124568999999
Q ss_pred HHHHhh
Q 026977 186 QKLEEY 191 (230)
Q Consensus 186 ~~l~~~ 191 (230)
+++.+.
T Consensus 249 ~~l~~~ 254 (256)
T TIGR00715 249 QFVARL 254 (256)
T ss_pred HHHHHh
Confidence 999875
No 382
>PRK10200 putative racemase; Provisional
Probab=20.69 E-value=5.4e+02 Score=22.16 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=54.7
Q ss_pred EEecCCcccHHH--HHHHH---HHHHcCCCCCcEEEEec-----------CCcchHHHHHHHHHHHcCCCCccccCcEEE
Q 026977 114 IALPGGYGTLEE--LLEVI---TWAQLGIHDKPVGLLNV-----------DGYYNYLLTFIDKAVDDGFIKPSQRNIIVS 177 (230)
Q Consensus 114 I~lPGG~GTL~E--l~~~~---t~~qlg~~~kPivlln~-----------~G~~~~l~~~l~~~~~~gfi~~~~~~~i~~ 177 (230)
|-+-||.|++.= ++.-+ +-.+.+....|.+++|. ++-|+....+|....+ -+.+....-.+.-
T Consensus 4 iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~-~L~~~g~~~ivia 82 (230)
T PRK10200 4 IGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAAL-GLQRAGAEGIVLC 82 (230)
T ss_pred EEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHH-HHHHcCCCEEEEC
Confidence 556799998762 22221 22334444566666664 2345544444433322 1122224456678
Q ss_pred cCCHHHHHHHHHhhcCCCccccccCchhhhhhhhhceeeeeccc
Q 026977 178 APNAKELVQKLEEYVPVHDGVIAKASWEVDKQQAQQQVGFKATT 221 (230)
Q Consensus 178 ~~d~ee~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (230)
|+|+.-..+.+++..+.+.-.-....=..-++.....||.=+|+
T Consensus 83 CNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~~VglLaT~ 126 (230)
T PRK10200 83 TNTMHKVADAIESRCSLPFLHIADATGRAITGAGMTRVALLGTR 126 (230)
T ss_pred CchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCCCeEEEeccH
Confidence 89999999999887654321111000011112234578887774
No 383
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=20.67 E-value=4.9e+02 Score=21.48 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-cCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY-GGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 12 ~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt-GGg~~GlM~ava~gA~~~GG~viGI 75 (230)
+.+++.|.|+++ -..+.+++.|+++|+.++. .+...--.....+...+.+..+..+
T Consensus 2 ~~k~~lVtG~s~--------giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (246)
T PRK12938 2 SQRIAYVTGGMG--------GIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIAS 58 (246)
T ss_pred CCCEEEEECCCC--------hHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEE
No 384
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=20.67 E-value=2.1e+02 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCeEEEe-cCCcccHHH-HHHHHHHHHcC------CCCCcEEEEecCC
Q 026977 101 QRKAEMARHSDCFIAL-PGGYGTLEE-LLEVITWAQLG------IHDKPVGLLNVDG 149 (230)
Q Consensus 101 ~Rk~~m~~~sDa~I~l-PGG~GTL~E-l~~~~t~~qlg------~~~kPivlln~~G 149 (230)
.+-+..++.+|+||+. |.=-|++-- +-.++.|..-. ..+||+.++...|
T Consensus 82 ~~l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSg 138 (219)
T TIGR02690 82 RELRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSG 138 (219)
T ss_pred HHHHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCC
Confidence 3445567889999987 533333222 22344444321 4589999987653
No 385
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=20.59 E-value=5.3e+02 Score=23.81 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=10.3
Q ss_pred hcCeEEEecCCc
Q 026977 109 HSDCFIALPGGY 120 (230)
Q Consensus 109 ~sDa~I~lPGG~ 120 (230)
.+|++|+++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 589999999974
No 386
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.58 E-value=1.5e+02 Score=25.29 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGG 53 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg 53 (230)
++|.|.|+++. ....+++.|+++|+.|+.-+.
T Consensus 11 ~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 11 QVAVVTGAGRG--------LGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEeC
Confidence 46777765542 344566666777777764443
No 387
>PRK09242 tropinone reductase; Provisional
Probab=20.58 E-value=5.1e+02 Score=21.64 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGG 53 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGGg 53 (230)
+++.|.|+++ -..+.+.+.|+++|+.|+.-+.
T Consensus 10 k~~lItGa~~--------gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 10 QTALITGASK--------GIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHcCCEEEEEeC
Confidence 3566665544 1334555566667777655443
No 388
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.56 E-value=2.1e+02 Score=24.43 Aligned_cols=36 Identities=22% Similarity=0.088 Sum_probs=0.0
Q ss_pred ccCcCCc--ceEEEEcCCC-CCCChHHHHHHHHHHHHHHHCCCeEE
Q 026977 7 IQKNSRF--KRVCVFCGSS-TGKRNCYSDAAIDLAHELVARRLDLV 49 (230)
Q Consensus 7 ~~~~~~~--~~V~VfggS~-~~~~~~~~~~A~~LG~~LA~~g~~lV 49 (230)
.||..++ +++-|-|+|+ .+ ..+++++.|+++|+.|+
T Consensus 2 ~~~~~~~~~k~~lItGas~g~G-------IG~a~a~~la~~G~~v~ 40 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQS-------IAWGCARAFRALGAELA 40 (258)
T ss_pred CCcccccCCCEEEEECCCCCCc-------HHHHHHHHHHHcCCEEE
No 389
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=20.56 E-value=4.5e+02 Score=22.31 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHhhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 026977 106 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 151 (230)
Q Consensus 106 m~~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~ 151 (230)
+.+...+.|+|+||. |...+++.+.-.. .+.=+-|.+++.+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 344678999999996 5557887775432 1212455555555554
No 390
>PRK07116 flavodoxin; Provisional
Probab=20.55 E-value=4.5e+02 Score=20.99 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=44.0
Q ss_pred HhhcCeEEE-ecCCcccHHHHHHHHHHHHcCCCCCcEEEEecCCcc--hHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 026977 107 ARHSDCFIA-LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKE 183 (230)
Q Consensus 107 ~~~sDa~I~-lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~G~~--~~l~~~l~~~~~~gfi~~~~~~~i~~~~d~ee 183 (230)
+...|.+|+ .|=-.|++.+....+ +.++...+||++++.+.|.. ......++++....-+.+ ...+.-..+.++
T Consensus 74 l~~~D~Iiig~Pv~~~~~p~~v~~f-l~~~~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (160)
T PRK07116 74 IAEYDVIFLGFPIWWYVAPRIINTF-LESYDFSGKTVIPFATSGGSGIGNAEKELKKSYPDANWKE--GRLLNGGASKEE 150 (160)
T ss_pred HHhCCEEEEECChhccccHHHHHHH-HHhcCCCCCEEEEEEeCCCCCcCcHHHHHHHHCCcCcccc--CeeecCCCcHHH
Confidence 455776554 576667877766555 34555668999999774332 345555555432211111 111111134556
Q ss_pred HHHHHHh
Q 026977 184 LVQKLEE 190 (230)
Q Consensus 184 ~~~~l~~ 190 (230)
+-++|++
T Consensus 151 i~~wl~~ 157 (160)
T PRK07116 151 IKEWINK 157 (160)
T ss_pred HHHHHHH
Confidence 7777665
No 391
>PRK06194 hypothetical protein; Provisional
Probab=20.52 E-value=5.4e+02 Score=21.91 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGG 52 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVtGG 52 (230)
++|-|.|+++. ....+.+.|+++|+.|+.-+
T Consensus 7 k~vlVtGasgg--------IG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 7 KVAVITGAASG--------FGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CEEEEeCCccH--------HHHHHHHHHHHCCCEEEEEe
Confidence 45666666542 23355566667777765433
No 392
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=20.48 E-value=70 Score=30.39 Aligned_cols=25 Identities=32% Similarity=0.705 Sum_probs=14.7
Q ss_pred eEEEcCCCcchHHHHHHHHHhcCCeEE
Q 026977 47 DLVYGGGSIGLMGLVSKAVHHGGGNVI 73 (230)
Q Consensus 47 ~lVtGGg~~GlM~ava~gA~~~GG~vi 73 (230)
.+|-|||+.|+|-|..- .+.|-+|+
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~ 27 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVL 27 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEE
Confidence 46889999999988765 33444443
No 393
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.43 E-value=1.3e+02 Score=27.14 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=6.7
Q ss_pred cCeEEEecC
Q 026977 110 SDCFIALPG 118 (230)
Q Consensus 110 sDa~I~lPG 118 (230)
-|++|-..|
T Consensus 120 lDvLVnNAG 128 (299)
T PRK06300 120 IDILVHSLA 128 (299)
T ss_pred CcEEEECCC
Confidence 588887775
No 394
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.43 E-value=2.7e+02 Score=22.22 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=3.8
Q ss_pred hcCCeEEE
Q 026977 67 HGGGNVIG 74 (230)
Q Consensus 67 ~~GG~viG 74 (230)
+.|+..++
T Consensus 111 ~lGa~~v~ 118 (146)
T PRK09004 111 AKGAKQIG 118 (146)
T ss_pred HcCCeEee
Confidence 34555443
No 395
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=20.43 E-value=77 Score=28.65 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=18.1
Q ss_pred cccccccCcCCcceEEEEcCCC
Q 026977 2 EMEGKIQKNSRFKRVCVFCGSS 23 (230)
Q Consensus 2 ~~~~~~~~~~~~~~V~VfggS~ 23 (230)
.++..+|+..+.++|+||+|.+
T Consensus 78 ~l~i~i~~~~~~~ri~vl~Sg~ 99 (286)
T PRK13011 78 GMQWELHDPAARPKVLIMVSKF 99 (286)
T ss_pred CcEEEEeecccCceEEEEEcCC
Confidence 4567889988889999998765
No 396
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=20.41 E-value=2.3e+02 Score=24.91 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=20.0
Q ss_pred ccCcCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 026977 7 IQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVA 43 (230)
Q Consensus 7 ~~~~~~~~~V~VfggS~~~~~~~~~~~A~~LG~~LA~ 43 (230)
++|....+.|-|.++.....-+.. +..++||+.|++
T Consensus 130 l~~~~~~pvVpvsv~~~~~~~~~~-~~~~~lG~aL~~ 165 (271)
T cd07359 130 LDPDNDVPVVPVLVNCVTPPLPSL-RRCYALGRALRR 165 (271)
T ss_pred hcCCCCCCEEEEEecccCCCCCCH-HHHHHHHHHHHH
Confidence 567667788888875543221222 334455555554
No 397
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=20.38 E-value=6.5e+02 Score=23.43 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=40.1
Q ss_pred eEEEEc-CCCCCCChHHHHHHHHHHHHHHH-CCCeEEEc----CCCcchHHHHHHHHHhcCCeEEEEeCCccc
Q 026977 15 RVCVFC-GSSTGKRNCYSDAAIDLAHELVA-RRLDLVYG----GGSIGLMGLVSKAVHHGGGNVIGIIPRTLM 81 (230)
Q Consensus 15 ~V~Vfg-gS~~~~~~~~~~~A~~LG~~LA~-~g~~lVtG----Gg~~GlM~ava~gA~~~GG~viGI~P~~~~ 81 (230)
.|-+.+ ||| ++...+.-++|++.+.+ .++.+.++ +.| -+.+++. ...+.|..-+-|+|-++.
T Consensus 8 aiLLvgHGSR---dp~~~~~~~~La~~l~~~~~~~V~~aFLE~~eP-sl~eal~-~l~~~G~~~IvVvPlFL~ 75 (335)
T PRK05782 8 AIILIGHGSR---RETFNSDMEGMANYLKEKLGVPIYLTYNEFAEP-NWRSLLN-EIIKEGYRRVIIALAFLG 75 (335)
T ss_pred eEEEEecCCC---ChHHHHHHHHHHHHHHhccCCceEEEEeccCCC-CHHHHHH-HHHHCCCCEEEEeccccc
Confidence 344443 666 46777778888888865 46666666 566 6776664 455566666888886643
No 398
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=20.27 E-value=1.3e+02 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELV 42 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA 42 (230)
|+|+|||||=++..--+...|++..+.+.
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 46999999998777777777777666554
No 399
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.25 E-value=5.7e+02 Score=23.14 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE--------c----------------------------CCCcch
Q 026977 14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVY--------G----------------------------GGSIGL 57 (230)
Q Consensus 14 ~~V~VfggS~~~~~~~~~~~A~~LG~~LA~~g~~lVt--------G----------------------------Gg~~Gl 57 (230)
|+|+|+.-.. .+...+.+.++.++|.++|+.++. + ||. |-
T Consensus 1 m~igii~~~~---~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-GT 76 (292)
T PRK01911 1 MKIAIFGQTY---QESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGD-GT 76 (292)
T ss_pred CEEEEEeCCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCc-HH
Q ss_pred HHHHHHHHHhcCCeEEEE
Q 026977 58 MGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 58 M~ava~gA~~~GG~viGI 75 (230)
|=-+++-+...+-.++||
T Consensus 77 ~L~aa~~~~~~~~PilGI 94 (292)
T PRK01911 77 FLRTATYVGNSNIPILGI 94 (292)
T ss_pred HHHHHHHhcCCCCCEEEE
No 400
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.18 E-value=2.4e+02 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=23.3
Q ss_pred hhcCeEEEecCCcccHHHHHHHHHHHHcCCCCCcEEEEecC
Q 026977 108 RHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 148 (230)
Q Consensus 108 ~~sDa~I~lPGG~GTL~El~~~~t~~qlg~~~kPivlln~~ 148 (230)
+.+|.+|+ -||=||+-..+.. +..+++||+=+|..
T Consensus 71 ~~~D~vi~-lGGDGT~L~aar~-----~~~~~~PilGIN~G 105 (306)
T PRK03372 71 DGCELVLV-LGGDGTILRAAEL-----ARAADVPVLGVNLG 105 (306)
T ss_pred cCCCEEEE-EcCCHHHHHHHHH-----hccCCCcEEEEecC
Confidence 45785555 5789998755433 33468899888864
No 401
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.15 E-value=5.4e+02 Score=21.80 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchH
Q 026977 28 NCYSDAAIDLAHELVARRLDLVYGGGSIGLM 58 (230)
Q Consensus 28 ~~~~~~A~~LG~~LA~~g~~lVtGGg~~GlM 58 (230)
+...+.+..+.+.+.+.+..+++|-|..+.+
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~ 55 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAAN 55 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHH
Confidence 4556667777777777888889998764443
No 402
>PRK07041 short chain dehydrogenase; Provisional
Probab=20.12 E-value=1.2e+02 Score=24.94 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=18.2
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEEEE
Q 026977 48 LVYGGGSIGLMGLVSKAVHHGGGNVIGI 75 (230)
Q Consensus 48 lVtGGg~~GlM~ava~gA~~~GG~viGI 75 (230)
||||+.. |+-.++++...+.|-+|+.+
T Consensus 1 lItGas~-~iG~~~a~~l~~~G~~v~~~ 27 (230)
T PRK07041 1 LVVGGSS-GIGLALARAFAAEGARVTIA 27 (230)
T ss_pred CeecCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 4667665 77777777777666666655
Done!