BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026978
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 224 bits (571), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 103/167 (61%), Positives = 138/167 (82%), Gaps = 3/167 (1%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MV+AS+S H TF+YARP+T +S PS +++ +EF+ +GVTIIEGE++EH+K+VS+LK+VD
Sbjct: 20 MVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVD 79
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
+VIS + +P Q+ I++AIK AGNIKRFLPS+FGCEED+++PLPPFE+ LEKKRI+RR
Sbjct: 80 IVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRR 139
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPF---ESHDDVVVYGSGEAK 164
AIEAA +PYT+VSAN GAYFVN LL P +DD+V+YG+GE K
Sbjct: 140 AIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGETK 186
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 163 AKALPPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLID-P 221
++ LP P++IP+SI+HS+ KGD M++E+ +DDIEAS LYP+ +FT+ID LLD+F+
Sbjct: 253 SQELPQPQNIPVSILHSIFVKGDLMSYEMRKDDIEASNLYPELEFTSIDGLLDLFISGRA 312
Query: 222 PKPARTAFE 230
P P FE
Sbjct: 313 PPPTLAEFE 321
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 207 bits (527), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 129/164 (78%), Gaps = 5/164 (3%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 23 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 77
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A+PQ LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E+KR++RR
Sbjct: 78 VVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRR 137
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAK 164
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK
Sbjct: 138 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAK 181
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 163 AKALPPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPP 222
K LP PE+IPI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP
Sbjct: 248 TKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPP 307
Query: 223 KPARTAF 229
PA AF
Sbjct: 308 PPASAAF 314
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 129/164 (78%), Gaps = 5/164 (3%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 27 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 81
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A+PQ LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E+KR++RR
Sbjct: 82 VVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRR 141
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAK 164
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK
Sbjct: 142 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAK 185
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 163 AKALPPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPP 222
K LP PE+IPI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP
Sbjct: 252 TKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPP 311
Query: 223 KPARTAF 229
PA AF
Sbjct: 312 PPASAAF 318
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 206 bits (525), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 129/164 (78%), Gaps = 5/164 (3%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 27 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 81
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A PQ+LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E+KR++RR
Sbjct: 82 VVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRR 141
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAK 164
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK
Sbjct: 142 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAK 185
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 163 AKALPPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPP 222
K LP PE+IPI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP
Sbjct: 252 TKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPP 311
Query: 223 KPARTAF 229
PA AF
Sbjct: 312 PPASAAF 318
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 129/164 (78%), Gaps = 5/164 (3%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
MVK S+ GH T+V+ RP NS SK + EFQ +G I++GELDEH+K+V ++K+VD
Sbjct: 27 MVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVD 81
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVIS +A+PQ LDQ +I+ AIKVAGNIKRFLPS+FG EED++ LPPFEA +E++R++RR
Sbjct: 82 VVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERQRMIRR 141
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFESHDDVVVYGSGEAK 164
AIE A IPYT+VSAN +YF+N LLRP++ D++ VYG+GEAK
Sbjct: 142 AIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAK 185
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 163 AKALPPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFLIDPP 222
K LP PE+IPI+I+H L G +M+++ E+D+EAS LYP+ KFTTID+LLDIF+ DPP
Sbjct: 252 TKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFTTIDELLDIFVHDPP 311
Query: 223 KPARTAF 229
PA AF
Sbjct: 312 PPASAAF 318
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 12/181 (6%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
+V AS+S GH T+V RP S K+++ F+ +G +IE LD+H+++V LK+VD
Sbjct: 20 IVNASISLGHPTYVLFRPEVV-SNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78
Query: 61 VVISTVA----YPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKV-RPLPPFEAYLEKK 115
VVIS +A L+QL++V AIK AGNIKRFLPSEFG + D + L P K
Sbjct: 79 VVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDK 138
Query: 116 RIVRRAIEAAQIPYTFVSANLCGAYFVNVLLRPFESH-----DDVVVYGSGEAKALPPPE 170
R VRRAIEAA IPYT+VS+N+ YF L + + H D V++YG G K + E
Sbjct: 139 RKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQ-LDGHMMPPRDKVLIYGDGNVKGIWVDE 197
Query: 171 D 171
D
Sbjct: 198 D 198
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 177 MHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFL 218
++ + +GD NFE+G + IEA+KLYP+ K+ T+D L+ ++
Sbjct: 272 LYQIFFRGDLYNFEIGPNAIEATKLYPEVKYVTMDSYLERYV 313
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVD 60
+ KAS+ GH TF+ R T +S K ++ + F+ G I+ G +D+H +V +K VD
Sbjct: 20 VAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVD 79
Query: 61 VVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRR 120
VVISTV Q Q+ I+ AIK G +KRF PSEFG + D V + P ++ E K VRR
Sbjct: 80 VVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRR 139
Query: 121 AIEAAQIPYTFVSANLCGAYFVNVLLRPFES---HDDVVVYGSGEAKAL 166
AIEA IPYT+VS+N YF+ L + + D VV+ G G A+ +
Sbjct: 140 AIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVV 188
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 167 PPPEDIPISIMHSLLAKGDSMNFELGEDDIEASKLYPDFKFTTIDQLLDIFL 218
P P +I I+I HS+ KGD NFE+G +EAS+LYPD K+TT+D+ L F+
Sbjct: 257 PFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 4/169 (2%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRP-SKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEV 59
+V AS+ +G+ T+ R + P +K E+ +Q +GV ++EG++++H+ +V +K+V
Sbjct: 18 IVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQV 77
Query: 60 DVVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVR 119
D+VI DQ++I+ AIK AGN+K+F PSEFG + D+ + P E+K +R
Sbjct: 78 DIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIR 137
Query: 120 RAIEAAQIPYTFVSANLCGAYFVNVLLRPFES---HDDVVVYGSGEAKA 165
R IEA +PYT++ + YF+ L + + D VV+ G G K
Sbjct: 138 RVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKG 186
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 169 PEDIPISIMHSLLAKGDSMNFELG-EDDIEASKLYPDFKFTTIDQLLDIFL 218
P + +++ HS KGD++ +E+ DIEAS+ YPD +TT D+ L+ F+
Sbjct: 258 PHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDVTYTTADEYLNQFV 307
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 7/170 (4%)
Query: 1 MVKASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKE-- 58
+ AS+ + T++ ARP ++ PSK +I K + G I+ G ++E + + ILKE
Sbjct: 26 VATASLDAHRPTYILARPGPRS--PSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHE 83
Query: 59 VDVVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIV 118
+D+V+STV LDQ+ +V A+K G IKRFLPSEFG + ++ P+ P +KR V
Sbjct: 84 IDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRV 143
Query: 119 RRAIEAAQIPYTFVSANLCGAYFVNVLLRPFE---SHDDVVVYGSGEAKA 165
R+ +E + IP+T++ N ++ + P E D +YG G KA
Sbjct: 144 RQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKA 193
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 169 PEDIPISIMHSLLAKGDSMNFEL-GEDDIEASKLYPDFKFTTIDQLLDIFLI 219
P+ + + H + KG +NF + G +D+E + LYP+ F T+++ +++
Sbjct: 265 PQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRTVEECFGEYIV 316
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 76 EIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTFVSAN 135
+V A + AG +K + + E+ + PL E AI IPYTF+
Sbjct: 89 NVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YAIRTTNIPYTFLRNA 141
Query: 136 LCGAYFVNVLLRP-FESHDDVVVYGSG 161
L +FVN LR ES V GSG
Sbjct: 142 LYTDFFVNEGLRASTESGAIVTNAGSG 168
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 76 EIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTFVSAN 135
+V A + AG +K + + E+ + PL E AI IPYTF+
Sbjct: 89 NVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YAIRTTNIPYTFLRNA 141
Query: 136 LCGAYFVNVLLRP-FESHDDVVVYGSG 161
L +FVN LR ES V GSG
Sbjct: 142 LYTDFFVNEGLRASTESGAIVTNAGSG 168
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 72 LDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPLPPFEAYLEKKRIVRRAIEAAQIPYTF 131
+ +V A + AG +K + + E+ + PL E AI IPYTF
Sbjct: 85 VQHANVVKAARDAG-VKHIAYTGYAFAEESIIPLAHVHLATE------YAIRTTNIPYTF 137
Query: 132 VSANLCGAYFVNVLLRP-FESHDDVVVYGSG 161
+ L +FVN LR ES V GSG
Sbjct: 138 LRNALYTDFFVNEGLRASTESGAIVTNAGSG 168
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 173 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 202
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 135 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 173 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 202
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 134 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 164
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 173 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 202
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 134 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 164
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 173 PISIMHSLLAKGDSMNFELGEDDIEA-SKLY 202
P ++M+ GD NF+L +DDI+ KLY
Sbjct: 135 PNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|2P1W|A Chain A, Structure Of The Phosphothreonine Lyase Spvc, The Effector
Protein From Salmonella
Length = 250
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 KASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVDVV 62
+A VS G + +Y +P +NS+ S +HK Q I +E L E+ I E DV
Sbjct: 155 QARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI--ECLESRLSENGVISGQCPESDVH 212
Query: 63 ISTVAYPQFLDQL 75
Y + ++L
Sbjct: 213 PENWKYLSYRNEL 225
>pdb|2Q8Y|A Chain A, Structural Insight Into The Enzymatic Mechanism Of The
Phophothreonine Lyase
pdb|2Z8P|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 KASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVDVV 62
+A VS G + +Y +P +NS+ S +HK Q I +E L E+ I E DV
Sbjct: 146 QARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI--ECLESRLSENGVISGQCPESDVH 203
Query: 63 ISTVAYPQFLDQL 75
Y + ++L
Sbjct: 204 PENWKYLSYRNEL 216
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 KASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVDVV 62
+A VS G + +Y +P +NS+ S +HK Q I +E L E+ I E DV
Sbjct: 146 QARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI--ECLESRLSENGVISGQCPESDVH 203
Query: 63 ISTVAYPQFLDQL 75
Y + ++L
Sbjct: 204 PENWKYLSYRNEL 216
>pdb|2Z8O|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8O|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 3 KASVSSGHKTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEGELDEHKKIVSILKEVDVV 62
+A VS G + +Y +P +NS+ S +HK Q I +E L E+ I E DV
Sbjct: 146 QARVSLGAQFTLYIKPDQENSQYSASFLHKTRQFI--ECLESRLSENGVISGQCPESDVH 203
Query: 63 ISTVAYPQFLDQL 75
Y + ++L
Sbjct: 204 PENWKYLSYRNEL 216
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 46 LDEHKKIVSILKEVDVVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFGCEEDKVRPL 105
L ++K ++IL +++V A FL++ ++H A NI EED+
Sbjct: 103 LKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIR------EEDRKTGN 156
Query: 106 PPF 108
PPF
Sbjct: 157 PPF 159
>pdb|3LR1|A Chain A, The Crystal Structure Of The Tungstate Abc Transporter
From Geobacter Sulfurreducens
Length = 236
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 141 FVNVLLRPFESHD----DVVVYGSGEAKALPPPEDIPISIMHS 179
+ VLL PFE + DV+ G+G+A L D+ + +H+
Sbjct: 20 LLKVLLPPFEKKNNVKVDVIAVGTGQALKLGEAGDVDVVFVHA 62
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 59 VDVVISTVAYPQFLDQLEIVHAIKVAGNIKRFLPSEFG--CEEDK---VRPLPPFEAYLE 113
VD+VI +E H A I+RFL EFG ED V+P+ F
Sbjct: 153 VDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFAT--- 209
Query: 114 KKRIVRRAIEAA 125
+R++ RA+E A
Sbjct: 210 -RRLMERALEWA 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,797,436
Number of Sequences: 62578
Number of extensions: 275946
Number of successful extensions: 693
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 36
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)