Query 026979
Match_columns 230
No_of_seqs 155 out of 453
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02810 carbon-monoxide oxyge 100.0 4E-74 8.6E-79 498.6 24.9 230 1-230 1-231 (231)
2 PLN02680 carbon-monoxide oxyge 100.0 8.3E-70 1.8E-74 473.7 24.4 224 1-224 1-225 (232)
3 PLN02351 cytochromes b561 fami 100.0 9.2E-67 2E-71 455.6 24.2 220 8-229 10-235 (242)
4 KOG1619 Cytochrome b [Energy p 100.0 1.8E-64 3.9E-69 438.3 20.6 208 10-218 19-227 (245)
5 cd08764 Cyt_b561_CG1275_like N 100.0 4.1E-62 8.8E-67 422.2 17.6 193 23-218 2-197 (214)
6 cd08762 Cyt_b561_CYBASC3 Verte 100.0 2.5E-56 5.4E-61 375.7 19.1 171 13-185 3-176 (179)
7 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 5.7E-51 1.2E-55 336.5 15.7 149 34-184 1-152 (153)
8 cd08766 Cyt_b561_ACYB-1_like P 100.0 1.8E-49 4E-54 325.0 15.1 143 41-183 2-144 (144)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 7.7E-47 1.7E-51 309.2 14.7 138 45-182 5-143 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 100.0 1.4E-33 3.1E-38 225.7 13.5 130 46-175 1-131 (131)
11 cd08761 Cyt_b561_CYB561D2_like 100.0 2.5E-33 5.4E-38 236.6 13.2 137 44-180 18-160 (183)
12 PF03188 Cytochrom_B561: Eukar 100.0 3.4E-32 7.4E-37 218.1 14.6 134 49-182 1-137 (137)
13 smart00665 B561 Cytochrome b-5 100.0 5.4E-31 1.2E-35 210.6 12.8 127 49-175 1-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.9 5E-24 1.1E-28 180.6 13.6 132 43-178 32-163 (191)
15 PF10348 DUF2427: Domain of un 98.6 5E-07 1.1E-11 70.6 9.0 87 43-138 14-102 (105)
16 PF13301 DUF4079: Protein of u 97.6 0.00094 2E-08 56.7 11.7 92 80-177 80-171 (175)
17 KOG4293 Predicted membrane pro 97.4 5.9E-06 1.3E-10 78.2 -4.9 125 48-176 213-340 (403)
18 PF03188 Cytochrom_B561: Eukar 96.9 0.015 3.3E-07 46.1 10.7 128 82-216 1-130 (137)
19 smart00665 B561 Cytochrome b-5 96.9 0.024 5.3E-07 44.9 11.6 124 82-213 1-126 (129)
20 cd08554 Cyt_b561 Eukaryotic cy 96.7 0.044 9.5E-07 43.5 11.9 126 81-213 3-128 (131)
21 cd08761 Cyt_b561_CYB561D2_like 96.5 0.082 1.8E-06 44.5 13.0 135 79-218 20-157 (183)
22 PF00033 Cytochrom_B_N: Cytoch 96.3 0.034 7.4E-07 45.5 9.1 143 78-220 7-176 (188)
23 cd08760 Cyt_b561_FRRS1_like Eu 96.1 0.28 6E-06 41.4 13.8 132 74-218 30-162 (191)
24 cd08763 Cyt_b561_CYB561 Verteb 96.0 0.1 2.2E-06 42.9 10.3 131 79-219 6-139 (143)
25 cd08764 Cyt_b561_CG1275_like N 94.1 0.64 1.4E-05 40.8 10.4 134 79-219 23-158 (214)
26 PF13706 PepSY_TM_3: PepSY-ass 93.9 0.054 1.2E-06 34.4 2.4 31 112-142 3-33 (37)
27 cd08766 Cyt_b561_ACYB-1_like P 92.3 1.2 2.6E-05 36.7 8.7 131 79-219 7-139 (144)
28 PLN02680 carbon-monoxide oxyge 91.0 1.7 3.8E-05 38.6 8.9 131 79-219 46-178 (232)
29 PF01292 Ni_hydr_CYTB: Prokary 91.0 7.5 0.00016 31.6 12.7 139 79-220 6-170 (182)
30 PF13172 PepSY_TM_1: PepSY-ass 89.7 0.6 1.3E-05 28.9 3.6 28 149-176 2-29 (34)
31 PRK11513 cytochrome b561; Prov 89.0 3.7 8.1E-05 34.5 9.1 98 78-178 8-105 (176)
32 cd08765 Cyt_b561_CYBRD1 Verteb 88.2 5.8 0.00013 33.1 9.5 131 79-219 11-146 (153)
33 PF13706 PepSY_TM_3: PepSY-ass 87.9 0.88 1.9E-05 28.8 3.5 29 149-177 1-29 (37)
34 COG3038 CybB Cytochrome B561 [ 86.8 7 0.00015 33.5 9.4 95 78-177 11-109 (181)
35 cd08762 Cyt_b561_CYBASC3 Verte 86.4 20 0.00043 30.7 12.6 131 79-219 34-169 (179)
36 TIGR02125 CytB-hydogenase Ni/F 85.2 17 0.00036 30.6 11.1 137 79-219 7-191 (211)
37 PF01794 Ferric_reduct: Ferric 82.6 6.1 0.00013 30.0 6.7 54 120-174 1-55 (125)
38 PF00033 Cytochrom_B_N: Cytoch 82.6 24 0.00052 28.5 11.7 69 110-178 99-175 (188)
39 PLN02351 cytochromes b561 fami 81.6 39 0.00085 30.3 13.5 128 81-219 52-181 (242)
40 PF04238 DUF420: Protein of un 81.0 5.8 0.00013 32.2 6.3 90 81-179 6-104 (133)
41 PF13703 PepSY_TM_2: PepSY-ass 78.9 11 0.00024 27.8 6.8 25 152-176 60-84 (88)
42 PLN02810 carbon-monoxide oxyge 76.2 28 0.0006 31.0 9.5 132 77-219 44-178 (231)
43 PF13703 PepSY_TM_2: PepSY-ass 75.4 17 0.00036 26.8 6.9 60 79-138 16-85 (88)
44 COG3038 CybB Cytochrome B561 [ 71.9 9.7 0.00021 32.6 5.4 57 116-177 15-71 (181)
45 PF08507 COPI_assoc: COPI asso 69.3 56 0.0012 26.0 12.4 81 80-175 4-84 (136)
46 PF13301 DUF4079: Protein of u 68.1 74 0.0016 27.0 10.0 111 83-209 55-165 (175)
47 PF03929 PepSY_TM: PepSY-assoc 66.9 8.2 0.00018 22.9 2.8 23 114-136 2-24 (27)
48 PF09990 DUF2231: Predicted me 63.1 63 0.0014 24.3 8.6 47 84-130 10-56 (104)
49 PF10067 DUF2306: Predicted me 62.5 31 0.00068 26.3 6.1 29 149-177 2-30 (103)
50 PF01292 Ni_hydr_CYTB: Prokary 62.1 82 0.0018 25.4 13.9 60 120-179 104-170 (182)
51 PRK13673 hypothetical protein; 61.4 83 0.0018 25.2 9.2 108 50-178 5-112 (118)
52 PF10951 DUF2776: Protein of u 59.5 1.5E+02 0.0033 27.6 12.1 130 44-175 34-169 (347)
53 KOG1619 Cytochrome b [Energy p 59.3 87 0.0019 28.1 9.1 123 79-210 54-178 (245)
54 PF13172 PepSY_TM_1: PepSY-ass 58.5 11 0.00024 23.1 2.5 25 113-137 5-29 (34)
55 PF04238 DUF420: Protein of un 57.7 1E+02 0.0022 25.0 11.2 87 77-176 28-127 (133)
56 PF07457 DUF1516: Protein of u 54.4 76 0.0016 24.9 7.1 51 75-127 28-78 (110)
57 PF14358 DUF4405: Domain of un 49.7 71 0.0015 22.0 5.8 50 120-169 5-58 (64)
58 PRK11513 cytochrome b561; Prov 46.5 1.1E+02 0.0024 25.5 7.5 63 79-141 83-161 (176)
59 PRK05419 putative sulfite oxid 45.9 2E+02 0.0043 24.9 12.6 59 108-172 35-93 (205)
60 PF10856 DUF2678: Protein of u 44.8 31 0.00067 27.6 3.5 63 74-143 22-84 (118)
61 PRK14992 tetrathionate reducta 43.8 2.6E+02 0.0057 26.1 10.1 24 83-106 49-73 (335)
62 COG1612 CtaA Uncharacterized p 43.1 2.8E+02 0.0061 25.8 13.6 53 119-176 263-315 (323)
63 PF10348 DUF2427: Domain of un 42.8 1.6E+02 0.0034 22.8 11.1 91 74-178 12-103 (105)
64 PRK10171 hydrogenase 1 b-type 41.9 2.4E+02 0.0051 24.6 12.2 60 79-138 18-84 (235)
65 PF10215 Ost4: Oligosaccaryltr 41.3 37 0.0008 21.5 2.8 25 194-220 8-32 (35)
66 PTZ00127 cytochrome c oxidase 39.2 3.5E+02 0.0076 25.8 14.0 47 117-168 349-395 (403)
67 TIGR01583 formate-DH-gamm form 38.8 2.4E+02 0.0052 23.8 12.9 135 80-218 10-172 (204)
68 PLN02631 ferric-chelate reduct 36.9 3.9E+02 0.0084 27.7 10.9 93 81-174 109-210 (699)
69 PRK15006 thiosulfate reductase 35.6 3.2E+02 0.007 24.4 12.4 63 151-217 175-243 (261)
70 PF13903 Claudin_2: PMP-22/EMP 35.1 2.2E+02 0.0048 22.3 7.9 20 81-100 102-121 (172)
71 PF01034 Syndecan: Syndecan do 32.8 17 0.00037 26.1 0.4 27 202-228 19-45 (64)
72 PRK10263 DNA translocase FtsK; 32.2 3.3E+02 0.0071 30.4 9.8 58 83-142 20-87 (1355)
73 COG4244 Predicted membrane pro 32.0 1.6E+02 0.0035 24.8 6.1 61 115-181 87-147 (160)
74 PF03189 Otopetrin: Otopetrin; 31.4 4.4E+02 0.0095 25.4 9.8 59 155-213 275-335 (441)
75 PLN02844 oxidoreductase/ferric 30.6 4E+02 0.0087 27.6 9.8 24 150-173 189-212 (722)
76 PRK10639 formate dehydrogenase 29.8 3.5E+02 0.0076 23.0 12.1 65 112-177 106-174 (211)
77 PF13572 DUF4134: Domain of un 27.7 1.8E+02 0.0039 22.4 5.3 49 84-133 45-94 (98)
78 COG3658 Cytochrome b [Energy p 25.4 4.4E+02 0.0095 22.7 9.3 97 115-213 35-165 (192)
79 PRK03735 cytochrome b6; Provis 25.0 4.5E+02 0.0096 23.1 8.0 63 116-178 40-116 (223)
80 PRK10639 formate dehydrogenase 24.6 4.4E+02 0.0095 22.4 9.0 133 80-217 15-173 (211)
81 PF06653 Claudin_3: Tight junc 24.2 4E+02 0.0087 21.8 7.7 88 45-132 51-151 (163)
82 PF14358 DUF4405: Domain of un 24.0 2.4E+02 0.0053 19.2 5.4 19 53-71 8-26 (64)
83 PF02628 COX15-CtaA: Cytochrom 23.9 5.2E+02 0.011 23.0 13.5 47 115-166 254-300 (302)
84 PF13630 SdpI: SdpI/YhfL prote 23.4 2.6E+02 0.0056 19.3 6.5 30 149-178 20-49 (76)
85 PF11158 DUF2938: Protein of u 23.1 4.3E+02 0.0094 21.8 10.7 87 79-168 58-148 (150)
86 PF12794 MscS_TM: Mechanosensi 20.8 6.7E+02 0.014 23.1 18.3 104 72-180 115-224 (340)
87 PF01794 Ferric_reduct: Ferric 20.6 2.1E+02 0.0046 21.2 4.6 64 111-174 31-97 (125)
88 CHL00045 ccsA cytochrome c bio 20.0 6.9E+02 0.015 23.0 11.5 111 52-176 43-160 (319)
No 1
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=4e-74 Score=498.62 Aligned_cols=230 Identities=81% Similarity=1.342 Sum_probs=222.3
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCccccccchhHHHHHHHHHhhhhHhhhcccccccchhH
Q 026979 1 MAIGVKALPITFVAHAVAIVAAIMVLVWCLGFRGGLAWEDTNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLNLRKEVKK 80 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~llg~~~~~lv~~W~~~~r~G~~w~~~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k 80 (230)
|+.|+.+.|++.++|++|+++++++++|+.+||||++||++|++++|||||+||++||+++++|||++||..|.+|+.+|
T Consensus 1 ~~~~~~~~~~~~~a~~lg~~~~vlvl~W~~~~rgG~aw~~~~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K 80 (231)
T PLN02810 1 MAVGINALPLTFVAHALAVIGAIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKK 80 (231)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHH
Confidence 78899999999999999999999999999999999999988778899999999999999999999999999997899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHH
Q 026979 81 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFG 160 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 160 (230)
.+|+.+|.+|++|+++|++++|+|||++++|||||+|||+|++|+++|.+||+.|+..|++|+.+++.|++++|+|+++|
T Consensus 81 ~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~G 160 (231)
T PLN02810 81 LIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFG 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCCCCCCC
Q 026979 161 LFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQGPA-EDDYSYSAI 230 (230)
Q Consensus 161 ~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~ 230 (230)
+++|+++++|+++|+.||++|.++++|++|++|+.++|++|+++++||++|+++++.+.|. |||+.|++.
T Consensus 161 l~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~~~~~~~~~~~~ 231 (231)
T PLN02810 161 LFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLTALAQSPSDEDDYSYSAI 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCccccccC
Confidence 9999999999999999999998877999999999999999999999999999999999886 788888874
No 2
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=8.3e-70 Score=473.72 Aligned_cols=224 Identities=46% Similarity=0.916 Sum_probs=216.2
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCccccccchhHHHHHHHHHhhhhHhhhcccccccchhH
Q 026979 1 MAIGVKALPITFVAHAVAIVAAIMVLVWCLGFRGGLAWEDTNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLNLRKEVKK 80 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~llg~~~~~lv~~W~~~~r~G~~w~~~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k 80 (230)
|+.++.+.|.+.++|++|+++++++++|+.+||||++|++||+.++|||||+||++||+++++|||++||+.|.+|+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~lv~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K 80 (232)
T PLN02680 1 MAVPVIRFPIFMLVRLLGVIVAALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKK 80 (232)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCcceEechHHHHHHHHHHHHHHHHhccccccccchhHH
Confidence 77888999999999999999999999999999999999877778899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHH
Q 026979 81 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFG 160 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 160 (230)
.+|+.+|.+|++|+++|++++|++||++++|||||+|||+|++|++++.+||+.|+.+|++|+.+++.|++++|+|+++|
T Consensus 81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G 160 (232)
T PLN02680 81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-CCccCCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 026979 161 LFVYILAVANAAIGFLEKLTFLENS-GLAKYGSEALLVNFTAVITILYGAFVIFSVASQGPAEDD 224 (230)
Q Consensus 161 ~~~~~lai~t~~lGl~ek~~f~~~~-~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~~~~~~ 224 (230)
+++|+++++|+.+|+.||.+|.+++ +|++|++|++++|++|+++++||++|+++++.|+++|||
T Consensus 161 ~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~p~~~~~~ 225 (232)
T PLN02680 161 IYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILAIVTPLNGKGD 225 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999999998754 799999999999999999999999999999999997775
No 3
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=9.2e-67 Score=455.64 Aligned_cols=220 Identities=40% Similarity=0.751 Sum_probs=205.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccCC-CCCcccc-ccchhHHHHHHHHHhhhhHhhhcccccccchhHHHHHH
Q 026979 8 LPITFVAHAVAIVAAIMVLVWCLGFRGGLAWED-TNKNLIF-NLHPVLMLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLV 85 (230)
Q Consensus 8 ~~~~~~~~llg~~~~~lv~~W~~~~r~G~~w~~-~~~~~~F-n~HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k~iH~~ 85 (230)
-|++.++|++|+++++++++|+.+||||++||+ ++++.+| ||||+||++||++|++|||++||.+|.+|+.+|.+|+.
T Consensus 10 ~~~~~~a~~lGl~~~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~ 89 (242)
T PLN02351 10 LPLLLFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLW 89 (242)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHH
Confidence 478899999999999999999999999999996 5556677 79999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccC-CCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHH
Q 026979 86 LHAIALILGIIGIYAAFKYHNESA-IVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVY 164 (230)
Q Consensus 86 lq~~a~~~~~iG~~aif~~h~~~~-~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~ 164 (230)
+|.+|++|+++|+++ ++||+++ +|||||+|||+|++|+++|.+||+.|+.+|++|+.+++.|++++|+|+++|+++|
T Consensus 90 Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if 167 (242)
T PLN02351 90 LQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTY 167 (242)
T ss_pred HHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHH
Confidence 999999999999999 7777665 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCccCCchhHHHHHHHHHHHHHHHHHHhhhccC--CCCCCCCCCCC
Q 026979 165 ILAVANAAIGFLEKLTFLENS-GLAKYGSEALLVNFTAVITILYGAFVIFSVASQ--GPAEDDYSYSA 229 (230)
Q Consensus 165 ~lai~t~~lGl~ek~~f~~~~-~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~--~~~~~~~~~~~ 229 (230)
+++++|+++|+.||.+|.+++ +|+++++|++++|++|+++++||++|++++++| ||++|+.+|+.
T Consensus 168 ~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr~~~~~~~~~ 235 (242)
T PLN02351 168 GLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQSHSSKLVYSS 235 (242)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCccccCCCccCCccc
Confidence 999999999999999999854 899999999999999999999999999999998 55666677753
No 4
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=100.00 E-value=1.8e-64 Score=438.27 Aligned_cols=208 Identities=48% Similarity=0.902 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCccccccchhHHHHHHHHHhhhhHhhhcccc-cccchhHHHHHHHHH
Q 026979 10 ITFVAHAVAIVAAIMVLVWCLGFRGGLAWEDTNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHA 88 (230)
Q Consensus 10 ~~~~~~llg~~~~~lv~~W~~~~r~G~~w~~~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~-~~k~~~k~iH~~lq~ 88 (230)
++.++|++|+.+++++++|+++||||++|++| ++++|||||+||++||++++|||+|+||.+| .+|+.+|.+|..+|+
T Consensus 19 ~~~~s~l~G~i~v~lvl~W~~~yr~Glaw~~~-~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~ 97 (245)
T KOG1619|consen 19 IVVVSHLLGFITVVLVLYWVNTYRGGLAWSSS-PNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHI 97 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCCC-cchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHH
Confidence 45799999999999999999999999999986 4789999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHH
Q 026979 89 IALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAV 168 (230)
Q Consensus 89 ~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai 168 (230)
+|++++++|++++|++||+++++||||+|||+|+.++++|.+||+.||.+|++|+.+++.|++++|+|+++|+.+|++++
T Consensus 98 ~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai 177 (245)
T KOG1619|consen 98 IALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAI 177 (245)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHhhhccC
Q 026979 169 ANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQ 218 (230)
Q Consensus 169 ~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 218 (230)
+|+++|+.||++|.+.++++++++|++++|++|+.+++||++|++.+++|
T Consensus 178 ~ta~~Gl~ek~~f~~~~~~s~~~~e~~l~n~~gv~~il~g~~Vl~~v~~~ 227 (245)
T KOG1619|consen 178 VTALTGLLEKLTFLCFGDLSTKNPEGYLVNFLGVFIILFGVLVLTLVTPP 227 (245)
T ss_pred HHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHheEEEecC
Confidence 99999999999999988999999999999999999999999999888877
No 5
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=4.1e-62 Score=422.16 Aligned_cols=193 Identities=42% Similarity=0.848 Sum_probs=185.1
Q ss_pred HHHHHHHHhhcCccccCCCCCccccccchhHHHHHHHHHhhhhHhhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 23 IMVLVWCLGFRGGLAWEDTNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAA 101 (230)
Q Consensus 23 ~lv~~W~~~~r~G~~w~~~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~-~~k~~~k~iH~~lq~~a~~~~~iG~~ai 101 (230)
+++++|+.+||||++||+ ++.+|||||+||++||+++++|||++||+.| .+|+.+|.+|+.+|.+|++|+++|++++
T Consensus 2 ~l~~~W~~~~rgG~~~~~--~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~av 79 (214)
T cd08764 2 VLVGIWLGKFRGGFSWTG--PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAV 79 (214)
T ss_pred EEEeehHHHcCCccccCC--CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999985 5678999999999999999999999999988 6777889999999999999999999999
Q ss_pred Hhhcccc--CCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 102 FKYHNES--AIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKL 179 (230)
Q Consensus 102 f~~h~~~--~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~ 179 (230)
|++||++ ++|||||+|||+|++|++++++||+.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+.+|+.||.
T Consensus 80 f~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~ 159 (214)
T cd08764 80 FDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKA 159 (214)
T ss_pred HHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHhhccCCccCCchhHHHHHHHHHHHHHHHHHHhhhccC
Q 026979 180 TFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQ 218 (230)
Q Consensus 180 ~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 218 (230)
+|.++ +|+++++|++++|++|+++++||++|++++++|
T Consensus 160 ~f~~~-~~~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~ 197 (214)
T cd08764 160 FFSLN-KYSNLPAEGVLGNFIGIVLVIFGGLVVYLVTEP 197 (214)
T ss_pred Hhccc-ccccCChhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99986 599999999999999999999999999999997
No 6
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.5e-56 Score=375.69 Aligned_cols=171 Identities=37% Similarity=0.686 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccccCCCCCccccccchhHHHHHHHHHhhhhHhhhcccc---cccchhHHHHHHHHHH
Q 026979 13 VAHAVAIVAAIMVLVWCLGFRGGLAWEDTNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLN---LRKEVKKVIHLVLHAI 89 (230)
Q Consensus 13 ~~~llg~~~~~lv~~W~~~~r~G~~w~~~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~---~~k~~~k~iH~~lq~~ 89 (230)
+.-++|+++++++++|+.+||||++||+++ ++|||||+||++||++|++|||++||..| .+|+.+|.+|+.+|.+
T Consensus 3 ~~~~lg~~~~~lv~~W~~~~rgG~~w~~~~--~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~ 80 (179)
T cd08762 3 LLGILGIACVVLVVHWNQMWRGGFAWDGSS--KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLL 80 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCC--CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHH
Confidence 456799999999999999999999999754 48999999999999999999999999766 3788899999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHH
Q 026979 90 ALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVA 169 (230)
Q Consensus 90 a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~ 169 (230)
|++++++|++++|++||++++||+||+|||+|++|+++|.+||+.|+.+|++|+.+++.|++++|+|+++|+++|+++++
T Consensus 81 Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laia 160 (179)
T cd08762 81 AFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIA 160 (179)
T ss_pred HHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 026979 170 NAAIGFLEKLTFLENS 185 (230)
Q Consensus 170 t~~lGl~ek~~f~~~~ 185 (230)
|+++|+.||.+|..++
T Consensus 161 t~~lGl~ek~~f~~~~ 176 (179)
T cd08762 161 SCISGINEKLFFSLKN 176 (179)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998863
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=5.7e-51 Score=336.47 Aligned_cols=149 Identities=42% Similarity=0.739 Sum_probs=141.7
Q ss_pred CccccCCCCCccccccchhHHHHHHHHHhhhhHhhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 026979 34 GGLAWEDTNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLN---LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAI 110 (230)
Q Consensus 34 ~G~~w~~~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~---~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~ 110 (230)
|||+||++ .++|||||+||++||+++++||||+||..| .+|+.+|++|+.+|.+|++|+++|++++|+|||++++
T Consensus 1 ~g~~w~~~--~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~ 78 (153)
T cd08765 1 EGLGWDGG--AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI 78 (153)
T ss_pred CCCCCCCC--CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 69999853 469999999999999999999999999654 5689999999999999999999999999999999999
Q ss_pred CCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026979 111 VNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLEN 184 (230)
Q Consensus 111 ~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~ 184 (230)
|||||+|||+|++|++++.+||+.|+.+|++|+.+.+.|++++|+|+++|+++|+++++|+++|+.||.+|..+
T Consensus 79 ~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 79 PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999875
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.8e-49 Score=324.98 Aligned_cols=143 Identities=62% Similarity=1.153 Sum_probs=138.7
Q ss_pred CCCccccccchhHHHHHHHHHhhhhHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhh
Q 026979 41 TNKNLIFNLHPVLMLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWL 120 (230)
Q Consensus 41 ~~~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~Hswl 120 (230)
|||.++|||||+||++||+++|+|||++||+.|.+|+.+|++|+.+|.+|++|+++|++++|+|||++++|||||+|||+
T Consensus 2 ~~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwl 81 (144)
T cd08766 2 DNKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWL 81 (144)
T ss_pred CCCcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHH
Confidence 56889999999999999999999999999998988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026979 121 GIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLE 183 (230)
Q Consensus 121 Gl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~ 183 (230)
|++|++++.+|++.|+.+|++|+.+++.|++++|+|+++|+++|+++++|+++|+.||.+|.+
T Consensus 82 Gl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek~~f~~ 144 (144)
T cd08766 82 GIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEKLTFLQ 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998888999999999999999999999999999999999864
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=7.7e-47 Score=309.19 Aligned_cols=138 Identities=41% Similarity=0.824 Sum_probs=133.8
Q ss_pred cccccchhHHHHHHHHHhhhhHhhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHH
Q 026979 45 LIFNLHPVLMLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIA 123 (230)
Q Consensus 45 ~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~-~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~ 123 (230)
++|||||++|++||+++++||+++||+.| .+|+.+|++|+.+|.+|++++++|+.++|+|||++++|||||+|||+|++
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~ 84 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGIL 84 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHH
Confidence 39999999999999999999999999888 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026979 124 VISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFL 182 (230)
Q Consensus 124 t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~ 182 (230)
|++++.+|++.|+..|++|+.+++.|++++|+||++|+++|+++++|+++|+.||.+|.
T Consensus 85 t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek~~f~ 143 (143)
T cd08763 85 TFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLLFN 143 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988899999999999999999999999999999998873
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=100.00 E-value=1.4e-33 Score=225.66 Aligned_cols=130 Identities=45% Similarity=0.887 Sum_probs=123.3
Q ss_pred ccccchhHHHHHHHHHhhhhHhhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHH
Q 026979 46 IFNLHPVLMLIGLIIIGGEAIMSYKGLN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAV 124 (230)
Q Consensus 46 ~Fn~HP~lM~~gfv~L~~~aiL~~r~~~-~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t 124 (230)
.|||||++|++||+++++||++++|..| .+|+.++++|+.+|.++++++++|+.+++++|++++++||+|+|||+|+++
T Consensus 1 ~f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~ 80 (131)
T cd08554 1 EFNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLAT 80 (131)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHH
Confidence 4899999999999999999999999976 678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 026979 125 ISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGF 175 (230)
Q Consensus 125 ~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl 175 (230)
++++++|++.|+..++.|+.+++.|+..+++|+++|+++++++++|+.+|+
T Consensus 81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999776667899999999999999999999999984
No 11
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.5e-33 Score=236.65 Aligned_cols=137 Identities=24% Similarity=0.442 Sum_probs=126.2
Q ss_pred ccccccchhHHHHHHHHHhhhhHhhhcccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhh
Q 026979 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKGLN----LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSW 119 (230)
Q Consensus 44 ~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~----~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~Hsw 119 (230)
+++|+|||++|++||+++++||++.+|..+ .+|+.++++|+.+|.++++++++|+.++++||++++++||+|+|||
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~ 97 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGI 97 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 469999999999999999999999998643 2678889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhccCCCc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 120 LGIAVISLYGIQWLYGFVIFFYPGGST--GLRSESLPWHVLFGLFVYILAVANAAIGFLEKLT 180 (230)
Q Consensus 120 lGl~t~~l~~lQ~~~G~~~fl~p~~~~--~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~ 180 (230)
+|+++++++++|++.|+..++.|+..+ +.|++++++||++|+++++++++|+.+|++|+++
T Consensus 98 lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~~~f 160 (183)
T cd08761 98 LGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLETRWF 160 (183)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 999999999999999999988876654 6788899999999999999999999999998443
No 12
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.4e-32 Score=218.10 Aligned_cols=134 Identities=34% Similarity=0.536 Sum_probs=126.0
Q ss_pred cchhHHHHHHHHHhhhhHhhhcc--cc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHH
Q 026979 49 LHPVLMLIGLIIIGGEAIMSYKG--LN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVI 125 (230)
Q Consensus 49 ~HP~lM~~gfv~L~~~aiL~~r~--~~-~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~ 125 (230)
|||+||++||+++++||++++|. .+ .+|+.++++|..+|.++++++++|+.+++.+|++++++||+|+|+|+|++++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~ 80 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF 80 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence 89999999999999999999996 33 5778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026979 126 SLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFL 182 (230)
Q Consensus 126 ~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~ 182 (230)
+++.+|++.|+..++.|+.+++.|+.+.++|++.|+++++++++|+.+|+.|+..|.
T Consensus 81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f~ 137 (137)
T PF03188_consen 81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWFK 137 (137)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998888777788899999999999999999999999999988773
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.97 E-value=5.4e-31 Score=210.62 Aligned_cols=127 Identities=46% Similarity=0.786 Sum_probs=119.1
Q ss_pred cchhHHHHHHHHHhhhhHhhhcc-cc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHH
Q 026979 49 LHPVLMLIGLIIIGGEAIMSYKG-LN-LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVIS 126 (230)
Q Consensus 49 ~HP~lM~~gfv~L~~~aiL~~r~-~~-~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~ 126 (230)
|||++|++||++++|||++.+|. .+ .+|+.++++|+.+|.++++++++|+.+++++|++++++||+|+|||+|+++++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~ 80 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFV 80 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHH
Confidence 79999999999999999999995 44 67888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 026979 127 LYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGF 175 (230)
Q Consensus 127 l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl 175 (230)
++++|++.|+..+..|+.+.+.|+.++++|+++|+++++++++|+.+|+
T Consensus 81 l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 81 LAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999998777666677889999999999999999999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.91 E-value=5e-24 Score=180.64 Aligned_cols=132 Identities=26% Similarity=0.240 Sum_probs=119.4
Q ss_pred CccccccchhHHHHHHHHHhhhhHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHH
Q 026979 43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGI 122 (230)
Q Consensus 43 ~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl 122 (230)
++..+++|+++|+++|.+++|+|++.+|.++.+++.++++|+.+|.++++++++|+..++.++ ..+.+|+++.|+|+|+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl 110 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGI 110 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhH
Confidence 457899999999999999999999999976556777889999999999999999999999988 5788999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 123 AVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 123 ~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek 178 (230)
++++++.+|++.|++ .|...++.|+..+++|++.|+++++++++|+.+|+.+.
T Consensus 111 ~~~~l~~lQ~~~G~~---~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~ 163 (191)
T cd08760 111 IVLALAILQPLLGLL---RPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLA 163 (191)
T ss_pred HHHHHHHHHHHHHHh---cCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999994 45555557888899999999999999999999999864
No 15
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.55 E-value=5e-07 Score=70.59 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=72.5
Q ss_pred CccccccchhHHHHHHHHHhhhhHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhhh
Q 026979 43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNL--YSLHSWL 120 (230)
Q Consensus 43 ~~~~Fn~HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf--~S~Hswl 120 (230)
.+..+.+|-.+|++++++++|-+++.-+ .+ .+.|...|++++++.++|+.....++++. ||+ .+.|+.+
T Consensus 14 ~~~~l~~Hi~lm~la~~il~Pi~lvL~~-~~------sr~~~~~q~~~~~l~~~g~~~g~~~~~~~--p~lyp~n~H~k~ 84 (105)
T PF10348_consen 14 HRSALYAHIVLMTLAWVILYPIGLVLGN-AR------SRWHLPVQTVFLVLMILGLFLGSVYNGST--PDLYPNNAHGKM 84 (105)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-cc------chHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHH
Confidence 4567899999999999999999987543 22 23499999999999999999977665433 455 5899999
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 026979 121 GIAVISLYGIQWLYGFVI 138 (230)
Q Consensus 121 Gl~t~~l~~lQ~~~G~~~ 138 (230)
|.+.+++...|.++|++.
T Consensus 85 g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 85 GWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999864
No 16
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.64 E-value=0.00094 Score=56.72 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHH
Q 026979 80 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 159 (230)
Q Consensus 80 k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 159 (230)
+..|.-+-...+.+...|..-.-.+-..++.+=|.|.|-|.|+..+.+...+....-. ..++.++..++.|...
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~------i~~g~~~~~R~lHi~l 153 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQ------IQKGNRPWARRLHIYL 153 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHH------HccCCchhHHHHHHHH
Confidence 4667665555555444443332222222333468899999999999999988775532 2222345778899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026979 160 GLFVYILAVANAAIGFLE 177 (230)
Q Consensus 160 G~~~~~lai~t~~lGl~e 177 (230)
+..+.++-..-+.+|...
T Consensus 154 N~~~l~Lf~~q~itG~~i 171 (175)
T PF13301_consen 154 NSLALLLFAWQAITGWRI 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999853
No 17
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=97.43 E-value=5.9e-06 Score=78.16 Aligned_cols=125 Identities=25% Similarity=0.238 Sum_probs=105.0
Q ss_pred ccchhHHHHHHHHHhhhhHhhhcccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHH
Q 026979 48 NLHPVLMLIGLIIIGGEAIMSYKGLNLR---KEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAV 124 (230)
Q Consensus 48 n~HP~lM~~gfv~L~~~aiL~~r~~~~~---k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t 124 (230)
+-|+++|..+..++++-+++.-|.++.. ...+..+|...|..++++.+.|+...-+.-++ ....-++.|.-+|+.+
T Consensus 213 ~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~-s~~~~~~~h~~~G~~~ 291 (403)
T KOG4293|consen 213 MTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNE-SDGTVYSAHTDLGIIL 291 (403)
T ss_pred ccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccC-CCceeeeecccchhHH
Confidence 4499999999999999999999887733 45678999999999988888887776443332 4556789999999999
Q ss_pred HHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 125 ISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 176 (230)
Q Consensus 125 ~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ 176 (230)
+++-.+|++..+ +=|....+.|+....+|+..|+...+++++++.-|+.
T Consensus 292 ~~l~~lQ~~~~l---~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~ 340 (403)
T KOG4293|consen 292 LVLAFLQPLALL---LRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLE 340 (403)
T ss_pred HHHHHHHHHHHH---hcCCcccCceeccceeeeecCcceeeehhhHHhhhHh
Confidence 999999999876 3376666678888899999999999999999999986
No 18
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.91 E-value=0.015 Score=46.12 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhc-cccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHH
Q 026979 82 IHLVLHAIALILGI-IGIYAAFKYH-NESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 159 (230)
Q Consensus 82 iH~~lq~~a~~~~~-iG~~aif~~h-~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 159 (230)
.|..++.+|+.+.. .|+.+...++ +..+++.....|..+-.+++++..+-....+.. ...+.++...-+|.+.
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~-----~~~~~~~h~~s~H~~l 75 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFIN-----KNRNGKPHFKSWHSIL 75 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCCCCCCCchhhh
Confidence 48999999998665 5555544322 234567778899999988777766555544422 1222334567799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 026979 160 GLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVA 216 (230)
Q Consensus 160 G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~ 216 (230)
|.+++++.....+.|+..... .+.+.+..+.-...=..+|.++.+.+..-++...
T Consensus 76 G~~~~~l~~~Q~~~G~~~~~~--~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 76 GLATFVLALLQPLLGFFRFFM--PGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHcc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986543 1111111222122245667777777776665444
No 19
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.89 E-value=0.024 Score=44.95 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhh-ccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHH
Q 026979 82 IHLVLHAIALILGI-IGIYAAFKY-HNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 159 (230)
Q Consensus 82 iH~~lq~~a~~~~~-iG~~aif~~-h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 159 (230)
.|..+..+|+.+.. .|... ++. .+..+++....+|-++..+++++.+.-...++... ....++.....|.+.
T Consensus 1 ~H~~lm~~~f~~l~p~gil~-~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~-----~~~~~~~~~s~H~~l 74 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILV-ARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISH-----NESGIANFYSLHSWL 74 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHH-hhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cccCCCCccchhHHH
Confidence 48999999996544 44444 442 33345677788999999999888776666655331 112235577899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHh
Q 026979 160 GLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 213 (230)
Q Consensus 160 G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 213 (230)
|++++++.......|+... +....+.+....-...=..+|.++...+..-++
T Consensus 75 Gl~~~~l~~~Q~~~G~~~~--~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~ 126 (129)
T smart00665 75 GLAAFVLAGLQWLSGFLRP--LPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIF 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999842 111000111111122334678888877776543
No 20
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.73 E-value=0.044 Score=43.47 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHH
Q 026979 81 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFG 160 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 160 (230)
..|..+..+++++...-...+++.-+..+++...-+|..+..+++++..+=...++... ..+.++.....|.++|
T Consensus 3 ~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~-----~~~~~~h~~s~Hs~lG 77 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFH-----NAGGIANLYSLHSWLG 77 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCcccchhHHHHHH
Confidence 35999999998744444444444423344556667999999988887775555554221 1233456778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHh
Q 026979 161 LFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 213 (230)
Q Consensus 161 ~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 213 (230)
++++++.......|+...+.-... + +....-...=..+|.+..+.+...++
T Consensus 78 l~~~~l~~~q~~~G~~~~~~~~~~-~-~~r~~~~~~H~~~G~~~~~la~~t~~ 128 (131)
T cd08554 78 LATVLLFLLQFLSGFVLFLLPLLR-L-SYRSSLLPFHRFFGLAIFVLAIATIL 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874321111 1 11111223344667777776665543
No 21
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.54 E-value=0.082 Score=44.51 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNE---SAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPW 155 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~---~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~ 155 (230)
....|..++.+++.+..-.....++..+. .+++.-..+|.++..+++.+...-....+ .. .....++...-+
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~----~~-~~~~~~~hf~s~ 94 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIY----YN-KERNGKPHFTSW 94 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----Hh-cccCCCCCccch
Confidence 46789999999999766666555552221 25556678999999988877664433332 21 122234567789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHhhhccC
Q 026979 156 HVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQ 218 (230)
Q Consensus 156 H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 218 (230)
|.+.|+++.++.......|+.....-...++.++...-...=..+|.++.+.+..-+.....+
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999997643211111011112222333467888888888777666655
No 22
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=96.30 E-value=0.034 Score=45.55 Aligned_cols=143 Identities=17% Similarity=0.218 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh----ccccCCCCccchhhhhHHHHHHHHHHHhhhhhhh---------------
Q 026979 78 VKKVIHLVLHAIALILGIIGIYAAFKY----HNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVI--------------- 138 (230)
Q Consensus 78 ~~k~iH~~lq~~a~~~~~iG~~aif~~----h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~--------------- 138 (230)
..+..|+..=..-+++.+.|+...+.. ......+....+|-++|++.+++.....+.++..
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 357899999988899999999887432 2222445677899999999999999999999877
Q ss_pred --hhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCccCCch-----hHHHHHHHHHHHHHHHH
Q 026979 139 --FFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE-KLTFLENSGLAKYGSE-----ALLVNFTAVITILYGAF 210 (230)
Q Consensus 139 --fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~e-k~~f~~~~~~~~~~~e-----~~~~n~~gl~~~~~~~~ 210 (230)
...+..++..+++..+..+..-.+++.+.++.+++|+.- .............+++ ..+=...+.+++.+-++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121212223345667889999999999999999999876 1000000000000111 11223445666666666
Q ss_pred HHhhhccCCC
Q 026979 211 VIFSVASQGP 220 (230)
Q Consensus 211 v~~~~~~~~~ 220 (230)
-++.++.++.
T Consensus 167 Hi~~a~~~~~ 176 (188)
T PF00033_consen 167 HIYAAIFHHF 176 (188)
T ss_dssp HHHHHHHBT-
T ss_pred HHHHHHHHhh
Confidence 7777766544
No 23
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.08 E-value=0.28 Score=41.40 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=87.2
Q ss_pred cccchhHHHHHHHHHHHHHHHH-HHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccch
Q 026979 74 LRKEVKKVIHLVLHAIALILGI-IGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSES 152 (230)
Q Consensus 74 ~~k~~~k~iH~~lq~~a~~~~~-iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~ 152 (230)
.+++.....|..++.+|..+.. .|..+.-.+ ..+.+...-+|..+=++++++.+.-...|+... .+.++..
T Consensus 30 ~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~--~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~------~~~~~~~ 101 (191)
T cd08760 30 GSSDTLIKAHGVLMAIAWGILMPIGALLARYF--LLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV------QGGGGSL 101 (191)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCCC
Confidence 3556678999999999999765 555444222 233444556899999988888887777777543 2234557
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHHHHHhhhccC
Q 026979 153 LPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVASQ 218 (230)
Q Consensus 153 ~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~ 218 (230)
...|...|++++++.+.....|+..+.... + +...-...==.+|.+..+.+.+-+......
T Consensus 102 ~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~---~--~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~ 162 (191)
T cd08760 102 NNAHAILGIIVLALAILQPLLGLLRPHPGS---K--KRSIWNWAHRWLGRAALILAIVNIFLGLDL 162 (191)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHhcCCCCC---C--cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999996542211 1 111112223345777777776666555443
No 24
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.98 E-value=0.1 Score=42.94 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhh-hhccCCCcccccchhhHHH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVI-FFYPGGSTGLRSESLPWHV 157 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~H~ 157 (230)
.-..|-.++.+++++...-...+|+..+...++.-+-.|.+++++++++... |+.. +... ....++...-+|-
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~----Gl~av~~~h--~~~~~~hf~SlHs 79 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLV----GLVAVFDYH--QANGYPDMYSLHS 79 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH----HHHHHHHHc--cccCCCccccHHH
Confidence 4567999999999988777777776555445555677999999998877653 4444 2222 2234567788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 158 LFGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 158 ~~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
+.|+.++++-......|+..-+ |.... +. +.+-|- =-+.|+.+.+.+.........+|
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~-~P~~~~~~r~~~~p~---H~~~G~~~f~la~~t~~lG~~ek 139 (143)
T cd08763 80 WCGILTFVLYFLQWLIGFSFFL-FPGASFTLRSQYKPL---HEFFGRALFLSSVGTSLLGLTEK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996532 21110 11 111121 23567777777777666655544
No 25
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.13 E-value=0.64 Score=40.77 Aligned_cols=134 Identities=17% Similarity=0.084 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVL 158 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 158 (230)
....|-.++.+++++...=-..+++.-+..++..-+..|..+..+++++...-...- |-.........+.+.-+|-|
T Consensus 23 ~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~av---f~~hn~~~~~~~hfySlHSw 99 (214)
T cd08764 23 QFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAV---FDSHNLAKPPIPNMYSLHSW 99 (214)
T ss_pred eEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccCCCCcccchHHH
Confidence 357899999999976655555555533222334456799999999888765432221 22222222244567789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 159 FGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 159 ~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
.|+.++++-......|+..- .+...+ +. +.+-|- =-+.|+++.+.+.........+|
T Consensus 100 lGl~t~~L~~lQ~~~Gf~~f-l~P~~~~~~r~~~~p~---H~~~Gl~~fvLaiaT~~lGl~ek 158 (214)
T cd08764 100 LGLTAVILFSLQWVGGFVSF-LFPGLPETLRAAYLPL---HVFFGLFIFVLAVATALLGITEK 158 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcccchHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999652 222111 11 112221 23568888877777777777664
No 26
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=93.89 E-value=0.054 Score=34.43 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=25.6
Q ss_pred CccchhhhhHHHHHHHHHHHhhhhhhhhhcc
Q 026979 112 NLYSLHSWLGIAVISLYGIQWLYGFVIFFYP 142 (230)
Q Consensus 112 hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p 142 (230)
.+..+|.|+|+++-.++.+-.+.|.+..+.|
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677899999999999998899888776654
No 27
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=92.26 E-value=1.2 Score=36.67 Aligned_cols=131 Identities=16% Similarity=0.009 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVL 158 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 158 (230)
.-..|-.++.+++++...=-..+|+..+ ..++.-+..|.++=.+++++.. .|+..-+.- .....++.+.-+|-|
T Consensus 7 ~Fn~HP~lM~~gfi~l~~eAiL~~r~~~-~~k~~~k~iH~~l~~la~~~~v----vGl~avf~~-~~~~~~~~~~SlHSw 80 (144)
T cd08766 7 IFNVHPVLMVIGFIFLAGEAILAYKTVP-GSREVQKAVHLTLHLVALVLGI----VGIYAAFKF-HNEVGIPNLYSLHSW 80 (144)
T ss_pred eeeccHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHHHHHHH----HHHHHHHHH-hcccCccccccHHHH
Confidence 4467999999998766655566666422 2233345689988887777654 344332211 122235567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 159 FGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 159 ~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
.|+.++++-....+.|+..- .+...+ ++ +.+-| .=-+.|+++.+.+.........+|
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f-~~P~~~~~~r~~~~p---~H~~~G~~~~~la~~t~~lGl~ek 139 (144)
T cd08766 81 LGIGTISLFGLQWLFGFVTF-WFPGASRNTRAALLP---WHVFLGLAIYYLAIATAETGLLEK 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCCCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999762 222211 11 11222 123567777777777666655544
No 28
>PLN02680 carbon-monoxide oxygenase
Probab=91.00 E-value=1.7 Score=38.56 Aligned_cols=131 Identities=17% Similarity=0.002 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVL 158 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 158 (230)
....|=.++.+++++...-...+|+..+ ..++.-+..|-.+=.+++++.. .|+..-+. ...++.++.+.-+|-|
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~-~~k~~~K~iH~~L~~lA~~l~v----vGl~avfk-~hn~~~~~nfySlHSW 119 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVP-GTKNLKKLVHLTLQFLAFCLSL----IGVWAALK-FHNEKGIDNFYSLHSW 119 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhcccccc-ccchhHHHHHHHHHHHHHHHHH----HHHHHHHH-hccccCccccccHHHH
Confidence 4478999999999995544555555332 2344456789988888777664 45444221 1223345678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 159 FGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 159 ~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
.|+.++++-......|+..- .+...+ +. +.+-|- =.+.|+.+.+.+.........+|
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f-~~P~~~~~~R~~~~p~---H~~~G~~if~LaiaT~~lG~~Ek 178 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTF-WYPGGSRNSRASLLPW---HVFFGIYIYALAVATATTGILEK 178 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HccCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999873 222211 11 122222 23567777777777766666654
No 29
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=90.96 E-value=7.5 Score=31.61 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhhhHHHHHHHHHHHhhhhh-----------------hhh
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNL--YSLHSWLGIAVISLYGIQWLYGF-----------------VIF 139 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf--~S~HswlGl~t~~l~~lQ~~~G~-----------------~~f 139 (230)
.+..||..=..-+.+...|+..-...+........ ..+|-++|++...+...=..... ...
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYF 85 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 46889999999899999998886665543333332 78999999998887765555440 000
Q ss_pred hccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc------CCchhHHHH-HHHHHHHHHHHHHH
Q 026979 140 FYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAK------YGSEALLVN-FTAVITILYGAFVI 212 (230)
Q Consensus 140 l~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~------~~~e~~~~n-~~gl~~~~~~~~v~ 212 (230)
... .+.....+..|.-+..-.+.+++..+..++|+.-... ..++... ...-...+. ..+..++.+-.+-+
T Consensus 86 ~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~--~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv 162 (182)
T PF01292_consen 86 LLR-GKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFA--SAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHV 162 (182)
T ss_pred Hhc-CCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111122334445556677778888888888875432 1111111 111122333 66677777777777
Q ss_pred hhhccCCC
Q 026979 213 FSVASQGP 220 (230)
Q Consensus 213 ~~~~~~~~ 220 (230)
+.++.+..
T Consensus 163 ~~a~~~~~ 170 (182)
T PF01292_consen 163 YAALFHHF 170 (182)
T ss_pred HHHHHHhh
Confidence 77766543
No 30
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=89.68 E-value=0.6 Score=28.89 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=25.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 149 RSESLPWHVLFGLFVYILAVANAAIGFL 176 (230)
Q Consensus 149 r~~~~p~H~~~G~~~~~lai~t~~lGl~ 176 (230)
|+..+.+|++.|+.+.+..+.-+++|..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999999999985
No 31
>PRK11513 cytochrome b561; Provisional
Probab=89.00 E-value=3.7 Score=34.49 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHH
Q 026979 78 VKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHV 157 (230)
Q Consensus 78 ~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~ 157 (230)
..+.+||..=.+-+.....|.......+ ...+.++++|-.+|++++.+.+.-.+..+.. --|..++..++.....=+
T Consensus 8 ~~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~-~~P~~~~~~~~~~~~~A~ 84 (176)
T PRK11513 8 LQIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLKY-PTPPIVPKPKPMMTGLAH 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCCCCHHHHHHHH
Confidence 3578999544333333333332211111 1224577999999999999999999998842 223222211111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026979 158 LFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 158 ~~G~~~~~lai~t~~lGl~ek 178 (230)
..-.++|++-++..++|+.-.
T Consensus 85 ~~H~~LY~lli~~plsG~~~~ 105 (176)
T PRK11513 85 LGHLVIYLLFIALPVIGLVMM 105 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223678888888888998743
No 32
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=88.22 E-value=5.8 Score=33.06 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCccchhhhhHHHHHHHHHHHhhhhhhh-hhccCCCcccccchhhH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHN--ESAIVNLYSLHSWLGIAVISLYGIQWLYGFVI-FFYPGGSTGLRSESLPW 155 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~--~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~ 155 (230)
.-..|=.++.+++++.-.=...+|+.-. ...++.-+..|-++=.+++++.. .|+.+ |-.. .....+.+.-+
T Consensus 11 ~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i----~Gl~avf~~h--n~~~~~~fySl 84 (153)
T cd08765 11 EFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAI----ISVVAVFVFH--NAKNIPNMYSL 84 (153)
T ss_pred eeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH----HHHHHHHHHc--cccCCCccccH
Confidence 3467999999999984433444555221 12244456788888777766554 35543 2222 22345678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 156 HVLFGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 156 H~~~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
|-|.|+.++++-......|+..-++ ...+ +. +.+-|--+ +.|+++.+++.........+|
T Consensus 85 HSwlGl~t~~l~~lQ~~~Gf~~f~~-P~~~~~~r~~~~p~H~---~~G~~i~~Lai~t~~lG~~ek 146 (153)
T cd08765 85 HSWVGLAAVILYPLQLVLGISVYLL-PVAPVRLRAALMPLHV---YSGLFIFGTVIATALMGITEK 146 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-cCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976332 2111 11 11222122 457777777777666655554
No 33
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=87.93 E-value=0.88 Score=28.82 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=25.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 149 RSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 149 r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
|+.+...|++.|+.+-.+-.+.+.+|..-
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56788999999999999999999999763
No 34
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=86.78 E-value=7 Score=33.45 Aligned_cols=95 Identities=23% Similarity=0.282 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCc----ccccchh
Q 026979 78 VKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGST----GLRSESL 153 (230)
Q Consensus 78 ~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~----~~r~~~~ 153 (230)
....+||..-++-+.....|....+..+.+..+-.++.+|-.+|+.+..+.++-.+..+..- -|...+ ..|..-+
T Consensus 11 ~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~-~p~~~~~~~~~~~~aA~ 89 (181)
T COG3038 11 VQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNP-APPIVPGPPPWQRKAAK 89 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCCChHHHHHHH
Confidence 35689999999888888999988877666555668999999999999999999888777331 121111 1223334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 154 PWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 154 p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
-.| .++|++-++--++|+.-
T Consensus 90 ~~H----l~LY~l~lalPlsG~l~ 109 (181)
T COG3038 90 LGH----LALYLLMLALPLSGYLL 109 (181)
T ss_pred HHH----HHHHHHHHHHHHHHHHH
Confidence 445 45677777777777543
No 35
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=86.37 E-value=20 Score=30.68 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCCCccchhhhhHHHHHHHHHHHhhhhhhh-hhccCCCcccccchhhH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNE--SAIVNLYSLHSWLGIAVISLYGIQWLYGFVI-FFYPGGSTGLRSESLPW 155 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~--~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~ 155 (230)
....|-.+..+++++...=...+|+.-.. ..+.-.+..|..+=.+++++-. .|+.+ |-+. .++..+.+.-+
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~v----vGl~avf~~h--n~~~~~nlySl 107 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTV----IGLCAVFNFH--NVHHTANLYSL 107 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHH----HHHHHHHHhc--cccCccchhhH
Confidence 56789999999999885555556652221 1222245789988887776644 34433 2222 22334667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 156 HVLFGLFVYILAVANAAIGFLEKLTFLENSGL--AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 156 H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~--~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
|-|.|+.+.++-....+.|+.. ..+...++. +.+.|--. +.|+.+.+++.........+|
T Consensus 108 HSWlGl~t~~Lf~lQ~~~Gf~~-f~~p~~~~~~ra~~~p~H~---~~G~~if~Laiat~~lGl~ek 169 (179)
T cd08762 108 HSWVGICTVALFTCQWVMGFTS-FLLPWAPMWLRALVKPIHV---FFGAMILVLSIASCISGINEK 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 222222111 22223222 557888777777766666654
No 36
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=85.21 E-value=17 Score=30.57 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-C------CCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCC-------
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNES-A------IVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG------- 144 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~-~------~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~------- 144 (230)
.+..||..=..-+++.+.|+.......+.. + ....+.+|-++|++.+++.+.=.+.++..- .|..
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~~-~~~~~r~~~~~ 85 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVGK-DSRYERFSFRD 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cchhhHHhhcC
Confidence 457799877777777778876643221100 1 123567899999888877776555554320 0000
Q ss_pred Ccccc-------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCC------------ch
Q 026979 145 STGLR-------------------SESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYG------------SE 193 (230)
Q Consensus 145 ~~~~r-------------------~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~------------~e 193 (230)
+.+.+ .+..+.-+..-.+++++..+..++|+.--.. .++.+.++ .+
T Consensus 86 ~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~~~~---~~~~~~~~~~~f~~~~~~~~~~ 162 (211)
T TIGR02125 86 PLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLALYYY---HNGLGGLLPSLFGWVEPLFGGL 162 (211)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCchHHHHHHHHHHHhCCh
Confidence 00000 1123566677778888888999999864210 00000000 00
Q ss_pred --h-HHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 194 --A-LLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 194 --~-~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
. .+=...+.+++++-++-++.++.++
T Consensus 163 ~~~~~iH~~~a~~l~~~i~~Hi~~a~~h~ 191 (211)
T TIGR02125 163 ANVRFIHHLGMWAFVIFVPVHVYMAVRED 191 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1123556666777777888877653
No 37
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=82.59 E-value=6.1 Score=29.95 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhhhhhh-hhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 026979 120 LGIAVISLYGIQWLYGFVI-FFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIG 174 (230)
Q Consensus 120 lGl~t~~l~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lG 174 (230)
+|.+.+.++.++.+.|.=. .+-+.... ..++...+||+.|+.+++++++=...=
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~-~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGI-SFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888876200 11011111 123355599999999999888765433
No 38
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=82.58 E-value=24 Score=28.49 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=43.0
Q ss_pred CCCccchhhhhHHHHHHHHHHHhhhhhhh---hhcc-----CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 110 IVNLYSLHSWLGIAVISLYGIQWLYGFVI---FFYP-----GGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 110 ~~hf~S~HswlGl~t~~l~~lQ~~~G~~~---fl~p-----~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek 178 (230)
.+.+.....+.-.........+.+.|+.. ...+ ..+.+.+.....+|.+.+.++..+.++=+...+..+
T Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a~~~~ 175 (188)
T PF00033_consen 99 SGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAAIFHH 175 (188)
T ss_dssp --SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666667777777788888888876 1111 111223455688999999998888887777776554
No 39
>PLN02351 cytochromes b561 family protein
Probab=81.56 E-value=39 Score=30.27 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHH
Q 026979 81 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFG 160 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G 160 (230)
..|-.+..+++++...=-..+|+.-+..++. -+..|-.+=.+++++- +.|+.+ -+... .+..+.+.-+|-|.|
T Consensus 52 n~HP~lMviGfi~L~geAILvYR~~~~~~k~-~K~lH~~Lh~~Ali~~----vvGl~a-~fh~~-~~~i~nlySLHSWlG 124 (242)
T PLN02351 52 VLHPLLMVIGFILISGEAILVHRWLPGSRKT-KKSVHLWLQGLALASG----VFGIWT-KFHGQ-DGIVANFYSLHSWMG 124 (242)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcccccchH-HHHHHHHHHHHHHHHH----HHHHHH-HHhcc-cCCccchhHHHHHHH
Confidence 5899999999998776666677753322222 5678988877666654 456555 11111 112356788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC-C-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 161 LFVYILAVANAAIGFLEKLTFLENSG-L-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 161 ~~~~~lai~t~~lGl~ek~~f~~~~~-~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
+.+.++-...-+.|+..= .+...+. . +.+-|-- -+.|+.+.+++.........+|
T Consensus 125 l~tv~Lf~lQwv~Gf~~F-~~P~~~~~~Ra~~~P~H---v~~Gl~if~LaiaTa~lGl~EK 181 (242)
T PLN02351 125 LICVSLFGAQWLTGFMSF-WHRGEMRTTRTTVLPWH---VFLGLYTYGLAVATAETGLLEK 181 (242)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCchhhHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999862 2222111 1 2222322 2568888888887777776664
No 40
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=81.02 E-value=5.8 Score=32.22 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHH---HHHHHHHHHhhhhhhhh---hccCCCcccccch--
Q 026979 81 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGI---AVISLYGIQWLYGFVIF---FYPGGSTGLRSES-- 152 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl---~t~~l~~lQ~~~G~~~f---l~p~~~~~~r~~~-- 152 (230)
.+.+.++.++.++..+|..++-+.+. ..|...=+ +...+|+.-++..-... -++ .+...|..+
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~--------~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~-g~~~ir~~Y~~ 76 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRI--------KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFG-GPGWIRPVYLF 76 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCccHHHHHHH
Confidence 56778888888888888888843222 23333222 22223333333222110 011 233345443
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 153 -LPWHVLFGLFVYILAVANAAIGFLEKL 179 (230)
Q Consensus 153 -~p~H~~~G~~~~~lai~t~~lGl~ek~ 179 (230)
.-.|.....++..+...|...|+.++.
T Consensus 77 iL~~Hi~LA~~~~pL~l~tl~~a~~~~~ 104 (133)
T PF04238_consen 77 ILISHIILAIVALPLVLYTLYRALRGRF 104 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 346999999999999999999998753
No 41
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=78.87 E-value=11 Score=27.78 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 152 SLPWHVLFGLFVYILAVANAAIGFL 176 (230)
Q Consensus 152 ~~p~H~~~G~~~~~lai~t~~lGl~ 176 (230)
...+|+..|........+-+.+|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999975
No 42
>PLN02810 carbon-monoxide oxygenase
Probab=76.18 E-value=28 Score=31.03 Aligned_cols=132 Identities=15% Similarity=0.014 Sum_probs=83.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhh-hhccCCCcccccchhhH
Q 026979 77 EVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVI-FFYPGGSTGLRSESLPW 155 (230)
Q Consensus 77 ~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~-fl~p~~~~~~r~~~~p~ 155 (230)
+.....|=.+..+++++.-.=-..+|+.-.. .++.-+..|..+=.+++++-. .|+.+ |-+. .++..+.+.-+
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~-~k~~~K~iH~~lh~~Al~l~v----vGl~Avf~~H--n~~~i~nlySL 116 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL-KKEVKKLIHLVLHAIALILGI----FGICAAFKNH--NESGIANLYSL 116 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc-ccchHHHHHHHHHHHHHHHHH----HHHHHHHHhc--cccCCCceeeH
Confidence 3345789999999998877767777764322 233356789888877776544 34433 2222 22234677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 026979 156 HVLFGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAFVIFSVASQG 219 (230)
Q Consensus 156 H~~~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~v~~~~~~~~ 219 (230)
|-|.|+.+..+-...-+.|+..=+ |...+ ++ +.+-|-- -+.|+.+.+.+.........+|
T Consensus 117 HSWlGl~tv~Lf~lQw~~Gf~~Fl-~P~~~~~~R~~~lP~H---v~~Gl~if~LAiata~lGi~EK 178 (231)
T PLN02810 117 HSWLGIGIISLYGIQWIYGFIVFF-FPGGSTNLRSGSLPWH---VLFGLFVYILAVGNAALGFLEK 178 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996422 11111 11 1112222 2567887777777776666664
No 43
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=75.45 E-value=17 Score=26.83 Aligned_cols=60 Identities=22% Similarity=0.306 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----------hccccCCCCccchhhhhHHHHHHHHHHHhhhhhhh
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFK----------YHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVI 138 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~----------~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~ 138 (230)
.+.+=...-.+.+++.+.|++.-+. .++.++....+.+|..+|+.+.....+-.+-|...
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666667777776542 11111122267899999999999888888888743
No 44
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=71.91 E-value=9.7 Score=32.58 Aligned_cols=57 Identities=25% Similarity=0.259 Sum_probs=42.4
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 116 LHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 116 ~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
+|=++. .++..|++.|...-..|+.+ ..|.....+|+.+|+.+..+.+.=++..+.+
T Consensus 15 lHWl~a----llv~~~~~~g~~~~~~~~~~-~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~ 71 (181)
T COG3038 15 LHWLMA----LLVIGAFALGELMGFLPRGP-GLYFLLYELHKSIGILVLALMVLRLLWRLRN 71 (181)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHcccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 454444 45666777787776677543 3566788999999999999999988888754
No 45
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=69.34 E-value=56 Score=26.04 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHH
Q 026979 80 KVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLF 159 (230)
Q Consensus 80 k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~ 159 (230)
+......-..|.++.+.|+.-.+.. .+.| ..++-+-..++|.+..+..-..+..++..+-+..+.
T Consensus 4 ~~~r~~~~~~~~~~i~~gi~~l~~~---------~~~~------~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~ 68 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGILSLFNS---------FSFS------SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYI 68 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------hhHH------HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHH
Confidence 4445555566666666665555443 1223 333444445667766555332333566677788999
Q ss_pred HHHHHHHHHHHHHHHH
Q 026979 160 GLFVYILAVANAAIGF 175 (230)
Q Consensus 160 G~~~~~lai~t~~lGl 175 (230)
||..+.+-+++...+.
T Consensus 69 GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999988887777766
No 46
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=68.12 E-value=74 Score=26.97 Aligned_cols=111 Identities=22% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHH
Q 026979 83 HLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLF 162 (230)
Q Consensus 83 H~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~ 162 (230)
|...+....+....|-..... +......|-.+|...++++.+-.+.|...-+.. ..+....-|-+.|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~------~~~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~-----~~~lf~spH~~~Gl~ 123 (175)
T PF13301_consen 55 YSIARAIFLILALTGTRKELV------KLKARDRHYRLGFALLAFMGLGALGGQLGTYRQ-----NGKLFWSPHLWAGLA 123 (175)
T ss_pred chhhHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHcchHHHHHc-----CCCCccCchHHHHHH
Confidence 444466666666666655544 122446799999999999999999998664432 122344459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccCCchhHHHHHHHHHHHHHHH
Q 026979 163 VYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGA 209 (230)
Q Consensus 163 ~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~ 209 (230)
+..+-..+..+.-. .+..++ .+.-+--...|.+.+++...-+
T Consensus 124 ~~~L~~~s~al~~~---i~~g~~--~~~R~lHi~lN~~~l~Lf~~q~ 165 (175)
T PF13301_consen 124 VVGLMAFSAALVPQ---IQKGNR--PWARRLHIYLNSLALLLFAWQA 165 (175)
T ss_pred HHHHHHHHHHHHHH---HccCCc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 98888877765432 121111 0111234456776666554433
No 47
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=66.89 E-value=8.2 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=13.3
Q ss_pred cchhhhhHHHHHHHHHHHhhhhh
Q 026979 114 YSLHSWLGIAVISLYGIQWLYGF 136 (230)
Q Consensus 114 ~S~HswlGl~t~~l~~lQ~~~G~ 136 (230)
+.+|.|++.++...+.+-.+-|.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666655555555554
No 48
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=63.07 E-value=63 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHH
Q 026979 84 LVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGI 130 (230)
Q Consensus 84 ~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~l 130 (230)
..--..+++.++.|+.....-+++....+--..|.++|+.++.++..
T Consensus 10 ~~G~l~~~~A~~~G~~d~~~~~~~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 10 VLGLLGAIVAVLTGFVDLLTVERGPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666667666655533333334456899999998888876
No 49
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=62.46 E-value=31 Score=26.30 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=24.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 149 RSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 149 r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
|++....||..|++-......++.+|+.-
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i 30 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFI 30 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHH
Confidence 56677799999999999999999999853
No 50
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=62.14 E-value=82 Score=25.37 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhc-cC------CCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 120 LGIAVISLYGIQWLYGFVIFFY-PG------GSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKL 179 (230)
Q Consensus 120 lGl~t~~l~~lQ~~~G~~~fl~-p~------~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~ 179 (230)
...+..++..++.+.|++.+.. +. .+.+.+.....+|.+.+.++.+..++=+.+.+.+..
T Consensus 104 ~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a~~~~~ 170 (182)
T PF01292_consen 104 VHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAALFHHF 170 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556777788888877542 11 133445667889999999998888877777776543
No 51
>PRK13673 hypothetical protein; Provisional
Probab=61.35 E-value=83 Score=25.16 Aligned_cols=108 Identities=22% Similarity=0.359 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHhhhhHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHH
Q 026979 50 HPVLMLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYG 129 (230)
Q Consensus 50 HP~lM~~gfv~L~~~aiL~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~ 129 (230)
|-.--.++.+.. --|...|| ..++..|.+|..+-..=++..+.|+....+.- ++.+-+|..=..+|+.++.++
T Consensus 5 Hi~sWvi~iILf-~vay~l~s---~~~~~~ki~hMilRLfyil~iiTG~~l~~~~~--~~~~~l~~~K~l~gi~vIg~m- 77 (118)
T PRK13673 5 HITSWVLAIILF-FVAYSLYS---GGSKKAKILHMILRLFYILIIITGFWLLIRSF--GSNHMLYILKMLLGIIVIGLM- 77 (118)
T ss_pred HHHHHHHHHHHH-HHHHHHHh---cCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHH-
Confidence 333344444433 23444454 23344568999999999999999988876642 222334555666666554332
Q ss_pred HHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 130 IQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 130 lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek 178 (230)
|...+ .|++=++-|.+.+..+.++ +.|..+|+.-.
T Consensus 78 -Em~l~------------r~kk~k~~~~~~~~~ii~l-vlti~lG~~Lp 112 (118)
T PRK13673 78 -EMSLA------------KRKKGKPTGGFWWIFIIVL-VLTILLGLILP 112 (118)
T ss_pred -HHHHH------------HHHcCCCcccHHHHHHHHH-HHHHHHHHHhc
Confidence 22211 2233355666766666554 66778887543
No 52
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=59.49 E-value=1.5e+02 Score=27.61 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=68.9
Q ss_pred ccccccchhHHHHHHHHH--hhhhHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCccchhhhh
Q 026979 44 NLIFNLHPVLMLIGLIII--GGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFK-YHNESAIVNLYSLHSWL 120 (230)
Q Consensus 44 ~~~Fn~HP~lM~~gfv~L--~~~aiL~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~-~h~~~~~~hf~S~Hswl 120 (230)
..-|-.-|+..++|.+.+ +..|.-..|-. -+++....-..+-.++...+++.+.-.+. .++....++|.+=|-..
T Consensus 34 ~~~~vAG~Vv~sL~~ICiALf~TAatIIrQl--i~ty~~~~k~~lP~iGY~~a~~T~i~G~~~~~~~~~~~~fVaGhVi~ 111 (347)
T PF10951_consen 34 SNRFVAGPVVFSLGAICIALFTTAATIIRQL--IHTYNTFAKYLLPIIGYLAAAITIIGGIYIFSSGPNAAYFVAGHVIF 111 (347)
T ss_pred cCceeecceeehHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCChhhhccCceee
Confidence 346778888889998765 34444444422 23333334445555555555444433222 44445678899999998
Q ss_pred HHHHHHHHHHHhhhhhhhh-hccCCCccc--ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 026979 121 GIAVISLYGIQWLYGFVIF-FYPGGSTGL--RSESLPWHVLFGLFVYILAVANAAIGF 175 (230)
Q Consensus 121 Gl~t~~l~~lQ~~~G~~~f-l~p~~~~~~--r~~~~p~H~~~G~~~~~lai~t~~lGl 175 (230)
|+-.+...+.....--.-| +.|..+.+. ...-.-+-+.-|..+....+.-.++|.
T Consensus 112 GvGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs~~~~~~Liav~~~~~li~~ 169 (347)
T PF10951_consen 112 GVGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFSRGQGNILIAVPILCALIGW 169 (347)
T ss_pred chhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcchHHHHHHHHHHHHHHHHHH
Confidence 8876665555444333334 346543322 111222344445555444444444444
No 53
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=59.33 E-value=87 Score=28.14 Aligned_cols=123 Identities=17% Similarity=0.079 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHH
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVL 158 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~ 158 (230)
..-.|-.+..++++..--=-..+|+.-+...++--+..|.++=++++++-..-...=|-.+- ....+.+.-.|-|
T Consensus 54 ~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn-----~~~i~NfySLHSW 128 (245)
T KOG1619|consen 54 EFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHN-----LVGIANFYSLHSW 128 (245)
T ss_pred hcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcCccceeeHHHH
Confidence 34589999999888755444455554222333445678999999888876544433332221 1123567789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-ccCCchhHHHHHHHHHHHHHHHH
Q 026979 159 FGLFVYILAVANAAIGFLEKLTFLENS-GL-AKYGSEALLVNFTAVITILYGAF 210 (230)
Q Consensus 159 ~G~~~~~lai~t~~lGl~ek~~f~~~~-~~-~~~~~e~~~~n~~gl~~~~~~~~ 210 (230)
.|+.++.+=.+.-..|+..-++ ...+ +| +.+-|--. .+|+.+..++..
T Consensus 129 lGl~~v~ly~~Q~v~GF~tfl~-pg~~~~~Rs~lmP~H~---~~Gl~~f~lai~ 178 (245)
T KOG1619|consen 129 LGLCVVILYSLQWVFGFFTFLF-PGSPESYRSRLMPWHV---FLGLAIFILAIV 178 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCccHHhhhhhHHH---HHHHHHHHHHHH
Confidence 9999999999999999976332 2222 33 34445443 335555544443
No 54
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=58.52 E-value=11 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.9
Q ss_pred ccchhhhhHHHHHHHHHHHhhhhhh
Q 026979 113 LYSLHSWLGIAVISLYGIQWLYGFV 137 (230)
Q Consensus 113 f~S~HswlGl~t~~l~~lQ~~~G~~ 137 (230)
+..+|-|+|+.+.+..++..+-|..
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999988874
No 55
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=57.69 E-value=1e+02 Score=24.98 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc-------------hhhhhHHHHHHHHHHHhhhhhhhhhccC
Q 026979 77 EVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYS-------------LHSWLGIAVISLYGIQWLYGFVIFFYPG 143 (230)
Q Consensus 77 ~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S-------------~HswlGl~t~~l~~lQ~~~G~~~fl~p~ 143 (230)
+.+...|--.|..|+.++.+=+..=...|...|..+|.. .|..+-.+++.+.......|+-.
T Consensus 28 ~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~----- 102 (133)
T PF04238_consen 28 RGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG----- 102 (133)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 335678999999888877665544333443333322222 46666666666655555555411
Q ss_pred CCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 144 GSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 176 (230)
Q Consensus 144 ~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ 176 (230)
-..-||-.|+.++..=..++.+|..
T Consensus 103 --------~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 103 --------RFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346999999999999999999874
No 56
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=54.39 E-value=76 Score=24.90 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHH
Q 026979 75 RKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISL 127 (230)
Q Consensus 75 ~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l 127 (230)
+.+..|..|..+-..=.+..+.|+....++ .++.|=+|..=..+|+.++.+
T Consensus 28 ~~k~~k~~~MilRl~YlliiisG~~L~~~~--~~~~~~l~~iK~l~gl~vI~l 78 (110)
T PF07457_consen 28 KTKKAKILHMILRLFYLLIIISGVWLFIRT--FAGNPMLYIIKMLLGLIVIGL 78 (110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHHH
Confidence 446678999999999999999999998764 234454555555566555443
No 57
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=49.74 E-value=71 Score=21.96 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhccCCC----cccccchhhHHHHHHHHHHHHHHH
Q 026979 120 LGIAVISLYGIQWLYGFVIFFYPGGS----TGLRSESLPWHVLFGLFVYILAVA 169 (230)
Q Consensus 120 lGl~t~~l~~lQ~~~G~~~fl~p~~~----~~~r~~~~p~H~~~G~~~~~lai~ 169 (230)
+=+..++.+..-.+.|...+..|... ...|...+..|.+.|...+++...
T Consensus 5 i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 5 INLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888876655321 223467788999999998887654
No 58
>PRK11513 cytochrome b561; Provisional
Probab=46.45 E-value=1.1e+02 Score=25.51 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----CCC-----------CccchhhhhHHHHHHHHHHHhhhhhhhhhc
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNES-----AIV-----------NLYSLHSWLGIAVISLYGIQWLYGFVIFFY 141 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~-----~~~-----------hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~ 141 (230)
.+..|+.+=.+-++.-+.|.......-+.- +.| .+.++|.+++-+.+++.++-........+.
T Consensus 83 A~~~H~~LY~lli~~plsG~~~~~~~G~~~~~fg~~lp~~~~~~~~~~~~~~~~H~~~a~~l~~li~lHvaaAL~H~~i 161 (176)
T PRK11513 83 AHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYF 161 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCceeccccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998765421100 011 144577777776666666666655554443
No 59
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=45.94 E-value=2e+02 Score=24.85 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=43.6
Q ss_pred cCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHH
Q 026979 108 SAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAA 172 (230)
Q Consensus 108 ~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~ 172 (230)
.|.+-..+.--..|..++.++.++...+-+.-+.+ ..++.++||..|+..+..+..=..
T Consensus 35 lg~~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~------~~~l~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 35 LGADPVKDIEHFTGLWALVFLLATLAVTPLRRLTG------QPLLIRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777899999999999888876443321 236889999999999988777654
No 60
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=44.83 E-value=31 Score=27.64 Aligned_cols=63 Identities=19% Similarity=0.391 Sum_probs=40.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccC
Q 026979 74 LRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPG 143 (230)
Q Consensus 74 ~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~ 143 (230)
++++..+.+|.+...+..++.++++...|.+-.++.+| .|=.++... .+.-.....+.+|+..
T Consensus 22 E~~~r~riinliiG~vT~l~VLvtii~afvf~~~~p~p----~~iffavcI---~l~~~s~~lLI~WYR~ 84 (118)
T PF10856_consen 22 ETSARDRIINLIIGAVTSLFVLVTIISAFVFPQDPPKP----LHIFFAVCI---LLICISAILLIFWYRQ 84 (118)
T ss_pred CCCcccEEEEeehHHHHHHHHHHHHhheEEecCCCCCc----eEEehHHHH---HHHHHHHHhheeehhc
Confidence 34444568999999999999999998887766544443 344444433 3333344566777753
No 61
>PRK14992 tetrathionate reductase subunit C; Provisional
Probab=43.77 E-value=2.6e+02 Score=26.13 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-Hhhcc
Q 026979 83 HLVLHAIALILGIIGIYAA-FKYHN 106 (230)
Q Consensus 83 H~~lq~~a~~~~~iG~~ai-f~~h~ 106 (230)
--.--.+|.++.++|..+. .|-|+
T Consensus 49 ~~~a~llA~~~livg~l~L~~DL~q 73 (335)
T PRK14992 49 ENRALLIAVTCAITAPLALTADLHQ 73 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777888888887775 45454
No 62
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=43.14 E-value=2.8e+02 Score=25.81 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 119 WLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFL 176 (230)
Q Consensus 119 wlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ 176 (230)
+.+...+++..+|...|+.+++.- . .-.+-..|.....+++..+..-+..+..
T Consensus 263 ~~~~~l~~lv~~Q~~~Gi~tv~~~-v----pl~~a~~H~~~~~~ll~~~~~~a~~~~r 315 (323)
T COG1612 263 TRAVVLLALVTLQAALGILTVLLG-V----PLALALAHQAAALVLLATALLHAWLLAR 315 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467788889999999999997642 2 2236778999555555555554444443
No 63
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=42.81 E-value=1.6e+02 Score=22.78 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=56.8
Q ss_pred cccchhHHHHHHHHHHHHHHHH-HHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccch
Q 026979 74 LRKEVKKVIHLVLHAIALILGI-IGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSES 152 (230)
Q Consensus 74 ~~k~~~k~iH~~lq~~a~~~~~-iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~ 152 (230)
++++..-+.|..++.++.+... +|+.. .+-+ .+||--.=.+..++...-+..|.. +-+..++. .-
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL--~~~~-------sr~~~~~q~~~~~l~~~g~~~g~~---~~~~~p~l--yp 77 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVL--GNAR-------SRWHLPVQTVFLVLMILGLFLGSV---YNGSTPDL--YP 77 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH--HHcc-------chHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCC--CC
Confidence 4566778999999999987543 44443 2222 135655544444455545555542 22221111 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 153 LPWHVLFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 153 ~p~H~~~G~~~~~lai~t~~lGl~ek 178 (230)
.-.|.-+|.+++++.++-.+.|+..|
T Consensus 78 ~n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 78 NNAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33899999999999999999999765
No 64
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=41.89 E-value=2.4e+02 Score=24.59 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCC------ccchhhhhHHHHHHHHHHHhhhhhhh
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESA-IVN------LYSLHSWLGIAVISLYGIQWLYGFVI 138 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~-~~h------f~S~HswlGl~t~~l~~lQ~~~G~~~ 138 (230)
.+..||..=+.-+.+.+.|+......-...+ .+. ...+|-+.|.+.+.+.+.-.+.|+..
T Consensus 18 ~Ri~HW~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~g 84 (235)
T PRK10171 18 VRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVG 84 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3577999888888888888775321111111 111 13579999999998888888877753
No 65
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=41.33 E-value=37 Score=21.46 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCC
Q 026979 194 ALLVNFTAVITILYGAFVIFSVASQGP 220 (230)
Q Consensus 194 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 220 (230)
..++|++|+... ..+|+|..+..++
T Consensus 8 ~~lan~lG~~~~--~LIVlYH~v~~n~ 32 (35)
T PF10215_consen 8 YTLANFLGVAAM--VLIVLYHFVEVNA 32 (35)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHCCH-
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhccc
Confidence 468999998776 5566666655433
No 66
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=39.21 E-value=3.5e+02 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHH
Q 026979 117 HSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAV 168 (230)
Q Consensus 117 HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai 168 (230)
........+.+.++|...|..+.+.. ....+-..|...+.+++...+
T Consensus 349 ~~~~~~~ll~lv~lQi~LGi~tv~~~-----lP~~la~~H~~gA~lLl~~~~ 395 (403)
T PTZ00127 349 VRRLLMALLGALTLQVLLGITTLLSQ-----VPVHLAVAHQFGALVLLTTLL 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHH
Confidence 34455667778899999999887643 223567789987776665543
No 67
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=38.82 E-value=2.4e+02 Score=23.83 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccC-----------
Q 026979 80 KVIHLVLHAIALILGIIGIYAAFKYHN-----ESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPG----------- 143 (230)
Q Consensus 80 k~iH~~lq~~a~~~~~iG~~aif~~h~-----~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~----------- 143 (230)
+..||+.=..-+++.+.|+...+..-. ..+.+....+|-+.|.+.+..++.-.+ ...-...|.
T Consensus 10 r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~~~-~~~~~~~~~~~d~~~~~~~~ 88 (204)
T TIGR01583 10 RILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFL-KWWRRMIPAKYDIRWMMKVG 88 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHhc
Confidence 456776666666666666665443111 011123445677777666554443321 111111110
Q ss_pred -------CCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCch-----hHHHHHHHHHHHHHHHHH
Q 026979 144 -------GSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSE-----ALLVNFTAVITILYGAFV 211 (230)
Q Consensus 144 -------~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e-----~~~~n~~gl~~~~~~~~v 211 (230)
.+.....++.|..+..-..++++.++.+++|+.--. +..... ..+.+ ..+=...+.+++++-+.-
T Consensus 89 ~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~~-~~~~~~--~~~~~~~~~~~~~H~~~a~l~~~~vi~H 165 (204)
T TIGR01583 89 GYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFMWF-LDFPST--AFSIELLRISALIHNFSAIILAVGFIVH 165 (204)
T ss_pred hHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112457788898888899889999999986531 111110 01111 122234555666676777
Q ss_pred HhhhccC
Q 026979 212 IFSVASQ 218 (230)
Q Consensus 212 ~~~~~~~ 218 (230)
+|.++.+
T Consensus 166 iy~a~~~ 172 (204)
T TIGR01583 166 IYMAVFG 172 (204)
T ss_pred HHHHHhc
Confidence 7777764
No 68
>PLN02631 ferric-chelate reductase
Probab=36.93 E-value=3.9e+02 Score=27.65 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc--------hhhhhHHHHHHHHHHHhhhhh-hhhhccCCCcccccc
Q 026979 81 VIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYS--------LHSWLGIAVISLYGIQWLYGF-VIFFYPGGSTGLRSE 151 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S--------~HswlGl~t~~l~~lQ~~~G~-~~fl~p~~~~~~r~~ 151 (230)
.+=.++..+++++-..+-+....++-....+...+ .=-..|+++..++.+.++.+- -.++.+ .....-.+
T Consensus 109 e~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~~~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~~-ltG~s~e~ 187 (699)
T PLN02631 109 ELTFSLLFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTILP-LVGLTSES 187 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH-HHCCCHHH
Confidence 45566777777777777777766641111111111 112345554444444443321 111111 01111356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 026979 152 SLPWHVLFGLFVYILAVANAAIG 174 (230)
Q Consensus 152 ~~p~H~~~G~~~~~lai~t~~lG 174 (230)
...+|||.|+.+++++++=.+.=
T Consensus 188 ~i~yHRWlGri~~~la~iH~i~y 210 (699)
T PLN02631 188 SIKYHIWLGHVSNFLFLVHTVVF 210 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999988765543
No 69
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=35.58 E-value=3.2e+02 Score=24.35 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHHHHHH-HHHhhccCCccCCc-h--h-HHHHHHHHHHHHHHHHHHhhhcc
Q 026979 151 ESLPWHVLFGLFV-YILAVANAAIGFLEK-LTFLENSGLAKYGS-E--A-LLVNFTAVITILYGAFVIFSVAS 217 (230)
Q Consensus 151 ~~~p~H~~~G~~~-~~lai~t~~lGl~ek-~~f~~~~~~~~~~~-e--~-~~~n~~gl~~~~~~~~v~~~~~~ 217 (230)
+.-|..+..-..+ +.+..+.+++|+.-- ..+... .... + . .+=...+.+++++-..-+|.++.
T Consensus 175 k~Npgqkl~y~~v~~~~~~~livTGl~l~~p~~~~~----~~~g~~~~~~~iH~~~a~lli~fiivHIYl~~~ 243 (261)
T PRK15006 175 KFNPLQQLAYLGVMYGLVPLLLLTGLLCLYPQAVGD----VFPGVRYWLLQLHFALAFISLFFIFGHLYLCTT 243 (261)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555543 345557788887631 111111 1111 1 1 22345566777777777887654
No 70
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=35.11 E-value=2.2e+02 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.183 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026979 81 VIHLVLHAIALILGIIGIYA 100 (230)
Q Consensus 81 ~iH~~lq~~a~~~~~iG~~a 100 (230)
+.=+.++.+|.++.++++..
T Consensus 102 ~~~~~~~~~ag~~~l~~l~~ 121 (172)
T PF13903_consen 102 LFAGILFILAGLCILIALIV 121 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445777777777777554
No 71
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=32.81 E-value=17 Score=26.07 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCC
Q 026979 202 VITILYGAFVIFSVASQGPAEDDYSYS 228 (230)
Q Consensus 202 l~~~~~~~~v~~~~~~~~~~~~~~~~~ 228 (230)
++.+++.++++..++...+.+|++.|.
T Consensus 19 Vvgll~ailLIlf~iyR~rkkdEGSY~ 45 (64)
T PF01034_consen 19 VVGLLFAILLILFLIYRMRKKDEGSYD 45 (64)
T ss_dssp ------------------S------SS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 344555555666666776778888873
No 72
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.24 E-value=3.3e+02 Score=30.42 Aligned_cols=58 Identities=12% Similarity=0.327 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhhccccCCCCcc------chhhhhHHHHHH-HHHHHhhhhhhhhhcc
Q 026979 83 HLVLHAIALILGIIGIYAA---FKYHNESAIVNLY------SLHSWLGIAVIS-LYGIQWLYGFVIFFYP 142 (230)
Q Consensus 83 H~~lq~~a~~~~~iG~~ai---f~~h~~~~~~hf~------S~HswlGl~t~~-l~~lQ~~~G~~~fl~p 142 (230)
|...++.++++.+++++.. +.++- . -|.|. ..|.|.|.+=-. --++-.++|..+|++|
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsP-s-DPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP 87 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNP-S-DPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIP 87 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-c-CCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHH
Confidence 5556677777777774443 33332 1 13333 247777765432 2223337788887766
No 73
>COG4244 Predicted membrane protein [Function unknown]
Probab=32.00 E-value=1.6e+02 Score=24.82 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred chhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 115 SLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF 181 (230)
Q Consensus 115 S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f 181 (230)
-||+.+|.++.+.+. +.|+.-+... .+...++.|+=-..|.++..+-..+..+|=..-+-+
T Consensus 87 ~wh~~lG~il~~~la---~~~~~r~~~~---~~~~~~v~~~~L~lsl~~~~Lv~l~g~lG~~l~y~~ 147 (160)
T COG4244 87 EWHHVLGNILLIVLA---ILTAWRYVHR---NDAVAAVSPAGLLLSLATVLLVALQGYLGAQLVYEH 147 (160)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH---cCChhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 367777766655443 2233332222 122344556666677777777777777776554443
No 74
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=31.41 E-value=4.4e+02 Score=25.44 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCccCCchhHHHHHHHHHHHHHHHHHHh
Q 026979 155 WHVLFGLFVYILAVANAAIGFLEKL--TFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 213 (230)
Q Consensus 155 ~H~~~G~~~~~lai~t~~lGl~ek~--~f~~~~~~~~~~~e~~~~n~~gl~~~~~~~~v~~ 213 (230)
.--..-.+++.+++++++.|+..-- -|...+.-+..+..-.++-..|..+.-...++..
T Consensus 275 ~~~i~~~~l~~l~~~a~i~g~~~~r~l~~~~~~~~~~LD~iLL~va~~G~~ly~~fsIia~ 335 (441)
T PF03189_consen 275 LVYIFELVLYSLSILAVIIGIYRMRKLKFSSKNPGRSLDVILLVVAAFGEFLYSYFSIIAG 335 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356668899999999999987521 1211111122233345555666666655555443
No 75
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=30.60 E-value=4e+02 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 026979 150 SESLPWHVLFGLFVYILAVANAAI 173 (230)
Q Consensus 150 ~~~~p~H~~~G~~~~~lai~t~~l 173 (230)
.+..++|||.|+.+++++++=.+.
T Consensus 189 e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 189 EASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999886653
No 76
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=29.82 E-value=3.5e+02 Score=23.02 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=42.7
Q ss_pred CccchhhhhHHHHHHHHHHHhhhhhhhhhccC----CCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 112 NLYSLHSWLGIAVISLYGIQWLYGFVIFFYPG----GSTGLRSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 112 hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~----~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
.++...-..-....+...++.+.|++.+ +|. .+....+....+|.....++.+..++=+.+.+.+
T Consensus 106 kyN~~qk~~y~~~~~~~~~~~iTGl~l~-~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy~a~~~ 174 (211)
T PRK10639 106 RYNFGQKCVFWAAIIFLVLLLVSGVIIW-RPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWV 174 (211)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555555555555566678899999764 331 1222234567899999988888888777776654
No 77
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=27.69 E-value=1.8e+02 Score=22.42 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCcc-chhhhhHHHHHHHHHHHhh
Q 026979 84 LVLHAIALILGIIGIYAAFKYHNESAIVNLY-SLHSWLGIAVISLYGIQWL 133 (230)
Q Consensus 84 ~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~-S~HswlGl~t~~l~~lQ~~ 133 (230)
-.+..++.+++++|..-+|..-| +|.|+.+ +.=+|+|-+.++....+.+
T Consensus 45 ~l~yaI~aVvglIGai~VY~k~~-~Gd~dv~k~i~~w~GaciFli~~a~~l 94 (98)
T PF13572_consen 45 KLMYAIGAVVGLIGAIRVYIKWN-NGDQDVKKSIMSWFGACIFLIVAATVL 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888777776544 5555544 6789999877766655543
No 78
>COG3658 Cytochrome b [Energy production and conversion]
Probab=25.45 E-value=4.4e+02 Score=22.66 Aligned_cols=97 Identities=27% Similarity=0.428 Sum_probs=56.7
Q ss_pred chhhhhHHHHHHHHHHHhhhhhhhh-------hccCCCcc----------cccchhhHHHHHHHH----HHHHHHHHHHH
Q 026979 115 SLHSWLGIAVISLYGIQWLYGFVIF-------FYPGGSTG----------LRSESLPWHVLFGLF----VYILAVANAAI 173 (230)
Q Consensus 115 S~HswlGl~t~~l~~lQ~~~G~~~f-------l~p~~~~~----------~r~~~~p~H~~~G~~----~~~lai~t~~l 173 (230)
.+|-|+|..++.+..+-.+-|.... +-| .+.+ .|+..-|=|.=.|.+ +..+-.++..+
T Consensus 35 ~~H~wvGyav~allalRL~WG~igs~~ARf~af~p-spa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~~l~~~v~T 113 (192)
T COG3658 35 QLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVP-SPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWALLLAQVGT 113 (192)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccccchhhhhccCC-ChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999887542 122 1111 122333446666654 34455666777
Q ss_pred HHHHHH--HHhhccCC-----ccCC------chhHHHHHHHHHHHHHHHHHHh
Q 026979 174 GFLEKL--TFLENSGL-----AKYG------SEALLVNFTAVITILYGAFVIF 213 (230)
Q Consensus 174 Gl~ek~--~f~~~~~~-----~~~~------~e~~~~n~~gl~~~~~~~~v~~ 213 (230)
|....+ +|..+ .| +... --..++|.+.+++++=-+.|+.
T Consensus 114 G~lar~d~~~ged-~~~~~~~~~h~~~~~~evHet~~nll~vliaiHiAav~~ 165 (192)
T COG3658 114 GWLARDDNFWGED-WYLNHLVSEHTGSLMREVHETLANLLAVLIAIHIAAVAA 165 (192)
T ss_pred hhhhhhhhhhccc-hhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876544 23221 11 1111 1246789999888775554443
No 79
>PRK03735 cytochrome b6; Provisional
Probab=25.03 E-value=4.5e+02 Score=23.12 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=41.5
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhc--cCCCccc------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 116 LHSWLGIAVISLYGIQWLYGFVIFFY--PGGSTGL------------RSESLPWHVLFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 116 ~HswlGl~t~~l~~lQ~~~G~~~fl~--p~~~~~~------------r~~~~p~H~~~G~~~~~lai~t~~lGl~ek 178 (230)
+==++|-++..++.+|.+-|.+--++ |...... ...++..|++..-+.+++...=..-|+...
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~g 116 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTG 116 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 43467888888888899988866443 4321111 122466788888888888777777776654
No 80
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=24.59 E-value=4.4e+02 Score=22.41 Aligned_cols=133 Identities=15% Similarity=0.098 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----c-cCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCC----------
Q 026979 80 KVIHLVLHAIALILGIIGIYAAFKYHN----E-SAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG---------- 144 (230)
Q Consensus 80 k~iH~~lq~~a~~~~~iG~~aif~~h~----~-~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~---------- 144 (230)
+..||+.=+.-+++++.|+...+..-. . .+.+.....|-+.|.+.++.+..... +..--..|..
T Consensus 15 Ri~HW~~a~s~~~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~i~~~~~~~~~~-~~~~~~~~~~~d~~w~~~~~ 93 (211)
T PRK10639 15 RINHWIVAFCFILAAVSGLGFFFPSFNWLMNILGTPQLARILHPFVGVVMFASFIIMFF-RYWHHNLINRDDIFWAKNIR 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCChhhHHHHHHhh
Confidence 356888888888888888866443211 0 01111223688888777766555432 1111111211
Q ss_pred ------CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCc----hhH-HHHHHHHHHHHHHHHHHh
Q 026979 145 ------STGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGS----EAL-LVNFTAVITILYGAFVIF 213 (230)
Q Consensus 145 ------~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~----e~~-~~n~~gl~~~~~~~~v~~ 213 (230)
......++.|..+..-..+++..++-+++|+.- + +..-. ..++. -.. +=...+.+++++-..-+|
T Consensus 94 ~~~~~~~~p~~~kyN~~qk~~y~~~~~~~~~~~iTGl~l-~-~p~~~--~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 94 KIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVII-W-RPYFA--PAFSIPVIRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred hhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhhc--ccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123466778888888888888889999862 1 11000 11111 122 223345555666666777
Q ss_pred hhcc
Q 026979 214 SVAS 217 (230)
Q Consensus 214 ~~~~ 217 (230)
.++.
T Consensus 170 ~a~~ 173 (211)
T PRK10639 170 AALW 173 (211)
T ss_pred HHhc
Confidence 7654
No 81
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=24.18 E-value=4e+02 Score=21.81 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=44.7
Q ss_pred cccccchhHHHHHHHHHhh----hhHhhhcccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHh----hccccCCCCc-
Q 026979 45 LIFNLHPVLMLIGLIIIGG----EAIMSYKGLN--LRKEVKKVIHLVLHAIALILGIIGIYAAFK----YHNESAIVNL- 113 (230)
Q Consensus 45 ~~Fn~HP~lM~~gfv~L~~----~aiL~~r~~~--~~k~~~k~iH~~lq~~a~~~~~iG~~aif~----~h~~~~~~hf- 113 (230)
..++.=+.+|.+.+..... ..+..++..+ .+++.||+.|..--...+.........+.. ++.+++.+.+
T Consensus 51 ~W~~~as~lm~is~~~~~i~i~~~~~~~~~v~~~g~~~~~r~~~~~i~~~s~li~il~~iavil~a~~~~~~~~~~~~~~ 130 (163)
T PF06653_consen 51 GWFAAASWLMYISFACFIIMIIFYIIIVYKVRKHGYSCSIRKWFHIISIFSLLIVILTIIAVILFAVNISSFNNGYDPFS 130 (163)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHheeEecccccHHHHHHHHHHHHHHHHHHHHHHHHheeEEeecccccccccccc
Confidence 4566668899888765422 2223333333 456667777766554444333333322221 2222223222
Q ss_pred --cchhhhhHHHHHHHHHHHh
Q 026979 114 --YSLHSWLGIAVISLYGIQW 132 (230)
Q Consensus 114 --~S~HswlGl~t~~l~~lQ~ 132 (230)
-.+..|+=++..++.....
T Consensus 131 ~~lGyS~wL~v~sail~~~~~ 151 (163)
T PF06653_consen 131 LSLGYSAWLCVASAILSLINF 151 (163)
T ss_pred ceeehHHHHHHHHHHHHHHHH
Confidence 2356777777777666554
No 82
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=23.98 E-value=2.4e+02 Score=19.20 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhHhhhcc
Q 026979 53 LMLIGLIIIGGEAIMSYKG 71 (230)
Q Consensus 53 lM~~gfv~L~~~aiL~~r~ 71 (230)
++.+.++.++-.|++.++.
T Consensus 8 ~l~~~~~~~~iSGi~l~~~ 26 (64)
T PF14358_consen 8 LLLVSFLVLAISGILLSFV 26 (64)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3445555555566655554
No 83
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.95 E-value=5.2e+02 Score=23.05 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=34.6
Q ss_pred chhhhhHHHHHHHHHHHhhhhhhhhhccCCCcccccchhhHHHHHHHHHHHH
Q 026979 115 SLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYIL 166 (230)
Q Consensus 115 S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~l 166 (230)
......+..+..+..+|.+.|..+.+.. ....+...|...+..++..
T Consensus 254 ~~~~~~~~~~~~ll~~Qv~lGi~~v~~~-----~p~~l~~~H~~~a~ll~~~ 300 (302)
T PF02628_consen 254 RALRRLAVLLLALLLLQVLLGILTVLTG-----LPVWLALLHQAGAALLLAA 300 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHH
Confidence 4566778888889999999999887652 2235677898888777653
No 84
>PF13630 SdpI: SdpI/YhfL protein family
Probab=23.37 E-value=2.6e+02 Score=19.32 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=25.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 149 RSESLPWHVLFGLFVYILAVANAAIGFLEK 178 (230)
Q Consensus 149 r~~~~p~H~~~G~~~~~lai~t~~lGl~ek 178 (230)
.+..+.-||+.|......|++....|+.-.
T Consensus 20 ~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 20 DENWKKAHRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999988888643
No 85
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=23.09 E-value=4.3e+02 Score=21.78 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHH--HHHHHhhhhhhhhhccCCCcccccc--hhh
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVIS--LYGIQWLYGFVIFFYPGGSTGLRSE--SLP 154 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~--l~~lQ~~~G~~~fl~p~~~~~~r~~--~~p 154 (230)
.+.+=|..|-+.-+....-+....... -...|.+.+- =..|++|+. ++..|..+|+-.+ -.+.|...+++ -.-
T Consensus 58 E~~~GW~~HY~iGi~fa~~~~~l~g~~-wl~~Pt~~~a-li~G~~tvl~p~~imqP~lG~G~a-as~tP~p~~~r~~sl~ 134 (150)
T PF11158_consen 58 ERILGWLAHYAIGIAFAVLYALLWGPG-WLSRPTLLPA-LIFGLVTVLAPFFIMQPALGAGIA-ASKTPNPWKARLRSLI 134 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCchHHH-HHHHHHHHHHHHHHHHHHHhcchh-hccCCCchHHHHHHHH
Confidence 455566666555554444444444322 2234444321 237887775 8999999998332 22333333333 356
Q ss_pred HHHHHHHHHHHHHH
Q 026979 155 WHVLFGLFVYILAV 168 (230)
Q Consensus 155 ~H~~~G~~~~~lai 168 (230)
-|..+|..+|+-+.
T Consensus 135 aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 135 AHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHHHHHhh
Confidence 79999999998664
No 86
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.83 E-value=6.7e+02 Score=23.13 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=57.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCccc---
Q 026979 72 LNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGL--- 148 (230)
Q Consensus 72 ~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~~--- 148 (230)
|+++|+..+..+--+.-+..++...-+...+.++.+.+. .-..+|-+++++.++-...=....+-|+.+...
T Consensus 115 F~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~-----~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~ 189 (340)
T PF12794_consen 115 FGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGL-----ARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKP 189 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh-----hhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCC
Confidence 456777777777777777777777777777776543332 245567666554442221111111223222111
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 149 ---RSESLPWHVLFGLFVYILAVANAAIGFLEKLT 180 (230)
Q Consensus 149 ---r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~ 180 (230)
+.+..+.=...-..+-+..++-+.+|++-...
T Consensus 190 ~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~ 224 (340)
T PF12794_consen 190 DSWIHRLRYLWWPLLILAPLALIVLALLGYYYTAL 224 (340)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 23344444455555566777888889876544
No 87
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=20.61 E-value=2.1e+02 Score=21.20 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCccchhhhhHHHHHHHHHHHhhhhhhhhhccC---CCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 026979 111 VNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPG---GSTGLRSESLPWHVLFGLFVYILAVANAAIG 174 (230)
Q Consensus 111 ~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~---~~~~~r~~~~p~H~~~G~~~~~lai~t~~lG 174 (230)
++....|-|+|..++++..+..+.=.....-.. ..........+.=...|.+.+.+.+.-+.+.
T Consensus 31 ~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS 97 (125)
T PF01794_consen 31 DRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTS 97 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888887777553332222111 0111223344445557777766655555544
No 88
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=20.02 E-value=6.9e+02 Score=22.97 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhhhhHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhHHHHHHHHHHH
Q 026979 52 VLMLIGLIIIGGEAIMSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQ 131 (230)
Q Consensus 52 ~lM~~gfv~L~~~aiL~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~hf~S~HswlGl~t~~l~~lQ 131 (230)
.++.+|+++- -+.+..|.....|......+-.+...+.++..+.+..-.+.++. .++|..+.-+-.+-
T Consensus 43 ~~~~~~~~~h--t~~l~~r~~~~g~~P~snlyE~l~f~aw~~~~v~l~~~~~~~~~----------~~lg~~~~p~a~l~ 110 (319)
T CHL00045 43 KGMIITFFCI--TGLLVTRWIYSGHFPLSNLYESLIFLSWSLSIIHIVPYFKKKKN----------RLLGAITAPSAIFT 110 (319)
T ss_pred HHHHHHHHHH--HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 4555666543 23355554322333445667778888888877777776554331 15676655544433
Q ss_pred hhhhhhhhhccCC-------CcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026979 132 WLYGFVIFFYPGG-------STGLRSESLPWHVLFGLFVYILAVANAAIGFL 176 (230)
Q Consensus 132 ~~~G~~~fl~p~~-------~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ 176 (230)
. ++..+..|.. .+..|+....+|+....+.|.+-.++++.|+.
T Consensus 111 ~--~~a~~~~p~~~~~~~~L~paL~s~wL~iHV~~~~lsYa~f~la~~~a~l 160 (319)
T CHL00045 111 Q--GFATSGLPTEMQQSTILVPALQSNWLMMHVSMMILSYAALLCGSLLSIA 160 (319)
T ss_pred H--HHHHhhcccccccccccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3323223422 22345566789998877777766666666644
Done!