Query 026979
Match_columns 230
No_of_seqs 155 out of 453
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kqf_C FDH-N gamma, formate de 84.2 6.4 0.00022 32.2 9.4 97 79-177 14-134 (217)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 76.8 5.6 0.00019 33.2 6.6 59 79-137 18-83 (235)
3 1kqf_C FDH-N gamma, formate de 44.0 1.2E+02 0.0042 24.2 9.5 43 127-170 24-71 (217)
4 2lat_A Dolichyl-diphosphooligo 41.1 42 0.0014 20.6 4.0 23 194-218 8-30 (37)
5 1rkl_A Dolichyl-diphosphooligo 37.6 50 0.0017 20.1 3.9 25 194-220 8-32 (36)
6 3ldc_A Calcium-gated potassium 11.5 3.8E+02 0.013 18.1 6.2 27 186-212 44-70 (82)
7 1q16_C Cytochrome B-NR, respir 10.3 6E+02 0.02 20.3 6.4 12 154-165 185-196 (225)
8 1v54_C Cytochrome C oxidase po 10.1 7.5E+02 0.026 20.7 8.2 23 113-135 203-225 (261)
9 4ain_A Glycine betaine transpo 7.6 1.3E+03 0.045 21.7 10.2 62 45-107 97-171 (539)
10 3mp7_B Preprotein translocase 7.1 3.2E+02 0.011 18.2 2.7 27 74-100 22-48 (61)
No 1
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=84.23 E-value=6.4 Score=32.20 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc----cc-CCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCCcc------
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHN----ES-AIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTG------ 147 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~----~~-~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~~~------ 147 (230)
.+..||..=+.-+++.+.|+...+.... .. +......+|-++|++.+.+++.-. +.......|. +.+
T Consensus 14 ~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~-~r~~r~~~p~-~~~~~~~~~ 91 (217)
T 1kqf_C 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMF-VRFVHHNIPD-KKDIPWLLN 91 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHH-HHHGGGSCCC-GGGHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-hhHHHHHHH
Confidence 4688998888777888888876522110 01 112356799999999988776533 2222222343 111
Q ss_pred -------------cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 148 -------------LRSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 148 -------------~r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
......|..+..=.+++++.++..++|+.-
T Consensus 92 ~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~~ 134 (217)
T 1kqf_C 92 IVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVII 134 (217)
T ss_dssp HHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112355677777778888888999999863
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=76.81 E-value=5.6 Score=33.20 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC--C-----ccchhhhhHHHHHHHHHHHhhhhhh
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNESAIV--N-----LYSLHSWLGIAVISLYGIQWLYGFV 137 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~--h-----f~S~HswlGl~t~~l~~lQ~~~G~~ 137 (230)
.+..||..=++-+.+.+.|+..........+.+ + ...+|-++|++.+++.++-.+.++.
T Consensus 18 ~R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 18 VRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899877777777788877654321111211 1 2358999999999999998888875
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=44.00 E-value=1.2e+02 Score=24.23 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=26.3
Q ss_pred HHHHHhhhhhhhhhccCCC-----cccccchhhHHHHHHHHHHHHHHHH
Q 026979 127 LYGIQWLYGFVIFFYPGGS-----TGLRSESLPWHVLFGLFVYILAVAN 170 (230)
Q Consensus 127 l~~lQ~~~G~~~fl~p~~~-----~~~r~~~~p~H~~~G~~~~~lai~t 170 (230)
++..+++.|+... .|... ...+...+.+|..+|.+..++.+.=
T Consensus 24 ~ii~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r 71 (217)
T 1kqf_C 24 CFFLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM 71 (217)
T ss_dssp HHHHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444556676554 45321 1123456789999999998776653
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=41.10 E-value=42 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccC
Q 026979 194 ALLVNFTAVITILYGAFVIFSVASQ 218 (230)
Q Consensus 194 ~~~~n~~gl~~~~~~~~v~~~~~~~ 218 (230)
..++|++|+...+ .+|+|..+..
T Consensus 8 ~~lan~lG~~~~~--LIVlYH~v~~ 30 (37)
T 2lat_A 8 AIFANMLGVSLFL--LVVLYHYVAV 30 (37)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhc
Confidence 4689999988774 4455554443
No 5
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=37.59 E-value=50 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCC
Q 026979 194 ALLVNFTAVITILYGAFVIFSVASQGP 220 (230)
Q Consensus 194 ~~~~n~~gl~~~~~~~~v~~~~~~~~~ 220 (230)
..++|++|+... ..+|+|..+..++
T Consensus 8 ~~lan~lG~~~~--~LIvlYH~v~~n~ 32 (36)
T 1rkl_A 8 NSLAITFGIVMM--TLIVIYHAVDSTM 32 (36)
T ss_dssp GHHHHHHHHHHH--HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhccc
Confidence 568999998876 5566666665544
No 6
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=11.45 E-value=3.8e+02 Score=18.06 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCccCCchhHHHHHHHHHHHHHHHHHH
Q 026979 186 GLAKYGSEALLVNFTAVITILYGAFVI 212 (230)
Q Consensus 186 ~~~~~~~e~~~~n~~gl~~~~~~~~v~ 212 (230)
+|.+..|..........+..++|..+.
T Consensus 44 GyGdi~P~t~~~r~~~~~~~~~G~~~~ 70 (82)
T 3ldc_A 44 GYGDYSPHTPLGMYFTCTLIVLGIGTF 70 (82)
T ss_dssp CCCSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 676666654445555666666565443
No 7
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=10.30 E-value=6e+02 Score=20.33 Aligned_cols=12 Identities=17% Similarity=0.747 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHH
Q 026979 154 PWHVLFGLFVYI 165 (230)
Q Consensus 154 p~H~~~G~~~~~ 165 (230)
..|...+...++
T Consensus 185 ~~Hi~~~~~~l~ 196 (225)
T 1q16_C 185 RLHLVLGMTLFL 196 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777665543
No 8
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=10.08 E-value=7.5e+02 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=16.3
Q ss_pred ccchhhhhHHHHHHHHHHHhhhh
Q 026979 113 LYSLHSWLGIAVISLYGIQWLYG 135 (230)
Q Consensus 113 f~S~HswlGl~t~~l~~lQ~~~G 135 (230)
|.-.|-.+|++.++....|...|
T Consensus 203 fHglHV~iG~i~l~~~~~r~~~~ 225 (261)
T 1v54_C 203 FHGLHVIIGSTFLIVCFFRQLKF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34478888888887777766544
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=7.60 E-value=1.3e+03 Score=21.66 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=36.4
Q ss_pred cccccchhHHHHH----HHHH-hhhhHhhhcccc-c-ccc------hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026979 45 LIFNLHPVLMLIG----LIII-GGEAIMSYKGLN-L-RKE------VKKVIHLVLHAIALILGIIGIYAAFKYHNE 107 (230)
Q Consensus 45 ~~Fn~HP~lM~~g----fv~L-~~~aiL~~r~~~-~-~k~------~~k~iH~~lq~~a~~~~~iG~~aif~~h~~ 107 (230)
+.|+|=..+.+.| .+|- ..|=+.-|...| . +.. .....||.+|.=|+- +++|+...|-.+|+
T Consensus 97 S~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiY-av~glalaY~~yrk 171 (539)
T 4ain_A 97 RTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIY-AIVGLAIAYSTFRV 171 (539)
T ss_dssp CHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHH-HHHHHHHHCCCCCT
T ss_pred cchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHhcC
Confidence 5577766655433 2322 234444454333 1 111 234779999998875 68899888876654
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=7.10 E-value=3.2e+02 Score=18.21 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=19.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHH
Q 026979 74 LRKEVKKVIHLVLHAIALILGIIGIYA 100 (230)
Q Consensus 74 ~~k~~~k~iH~~lq~~a~~~~~iG~~a 100 (230)
++|+.++..-......++.+.++|+.-
T Consensus 22 ~~KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777654
Done!