Query 026979
Match_columns 230
No_of_seqs 155 out of 453
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 04:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 72.2 17 0.0013 27.4 10.4 136 79-218 13-175 (216)
2 d1kqfc_ f.21.1.1 (C:) Formate 40.1 66 0.0048 23.8 12.3 68 109-177 104-175 (216)
3 d1q90b_ f.21.1.2 (B:) Cytochro 21.8 1.6E+02 0.012 22.4 9.1 105 67-179 18-137 (212)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 20.3 1.8E+02 0.013 22.5 8.8 58 120-177 19-90 (246)
5 d1xmea1 f.24.1.1 (A:14-562) Ba 16.4 3.1E+02 0.023 23.5 10.2 32 112-143 51-82 (549)
6 d1m56c_ f.25.1.1 (C:) Bacteria 16.1 2.3E+02 0.016 21.8 8.6 21 115-135 209-229 (265)
7 d1v54c_ f.25.1.1 (C:) Mitochon 14.1 2.6E+02 0.019 21.5 8.9 21 115-135 203-223 (259)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 13.3 1.1E+02 0.0077 16.5 3.3 8 25-32 19-26 (33)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 12.5 3E+02 0.022 21.4 10.5 58 120-177 32-103 (261)
10 d1nekd_ f.21.2.2 (D:) Succinat 11.6 2.1E+02 0.015 19.0 8.5 88 12-103 15-112 (113)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=72.20 E-value=17 Score=27.39 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----CCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCCC--------
Q 026979 79 KKVIHLVLHAIALILGIIGIYAAFKYHNES-----AIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGS-------- 145 (230)
Q Consensus 79 ~k~iH~~lq~~a~~~~~iG~~aif~~h~~~-----~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~~-------- 145 (230)
.+..||..=+.-+++.+.|+...+..-... .......+|-++|++.+.....-....+-....+...
T Consensus 13 ~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
T d1kqfc_ 13 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIV 92 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 458899999988889999987765332211 1122345788888776655544333333221111100
Q ss_pred ---------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCch----hHHH-HHHHHHHHHHHHHH
Q 026979 146 ---------TGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSE----ALLV-NFTAVITILYGAFV 211 (230)
Q Consensus 146 ---------~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~~f~~~~~~~~~~~e----~~~~-n~~gl~~~~~~~~v 211 (230)
.....++.|..+......+++...-+.+|+.--. ... ....+.+ ...+ ...+.+++.+-++-
T Consensus 93 ~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~--~~~--~~~~~~~~~~~~~~iH~~~~~l~~~~vi~H 168 (216)
T d1kqfc_ 93 EVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR--PYF--AQYFPMQVVRYSLLIHAAAGIILIHAILIH 168 (216)
T ss_dssp HHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT--TTT--GGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--cch--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011245678889999999999999999986311 000 0011111 1123 33455566666666
Q ss_pred HhhhccC
Q 026979 212 IFSVASQ 218 (230)
Q Consensus 212 ~~~~~~~ 218 (230)
+|..+..
T Consensus 169 vy~a~~~ 175 (216)
T d1kqfc_ 169 MYMAFWV 175 (216)
T ss_dssp HHHHHHB
T ss_pred HHHHHcc
Confidence 7766643
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=40.14 E-value=66 Score=23.80 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCCCccchhhhhHHHHHHHHHHHhhhhhhhhhccCC----CcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 109 AIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGG----STGLRSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 109 ~~~hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~~----~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
....++....+.....+.....+.+.|+..+. |.. +....+....+|.....++..+.++=+.+.+..
T Consensus 104 ~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~-~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~~ 175 (216)
T d1kqfc_ 104 DVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR-PYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWV 175 (216)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT-TTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred cHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44567788888999999999999999997653 322 222334456799999999888888877777643
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.75 E-value=1.6e+02 Score=22.42 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC---------------ccchhhhhHHHHHHHHHHH
Q 026979 67 MSYKGLNLRKEVKKVIHLVLHAIALILGIIGIYAAFKYHNESAIVN---------------LYSLHSWLGIAVISLYGIQ 131 (230)
Q Consensus 67 L~~r~~~~~k~~~k~iH~~lq~~a~~~~~iG~~aif~~h~~~~~~h---------------f~S~HswlGl~t~~l~~lQ 131 (230)
+..++.|.+-+..-..=..+-..=.+.++.|+...+.+..+.+.+. ..+.|.|-.=..+++..++
T Consensus 18 ~~~~~~P~~~~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lH 97 (212)
T d1q90b_ 18 ITSKYVPPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLH 97 (212)
T ss_dssp HHHCEECTTCCSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHH
Q ss_pred hhhhhhhhhccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 132 WLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKL 179 (230)
Q Consensus 132 ~~~G~~~fl~p~~~~~~r~~~~p~H~~~G~~~~~lai~t~~lGl~ek~ 179 (230)
..=++ +-+.-++.|+ .-...|..++.+.++++.+|+.-.|
T Consensus 98 m~r~~----~~gsyk~pre----~~W~~Gv~l~~l~m~~aftGY~Lpw 137 (212)
T d1q90b_ 98 VFRVY----LTGGFKRPRE----LTWVTGVIMAVCTVSFGVTGYSLPW 137 (212)
T ss_dssp HHHHH----TTTTTSSSCH----HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH----HcCcccCccc----ceehHhHHHHHHHHHHHHhhhhcch
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.29 E-value=1.8e+02 Score=22.47 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhc--cCCCcccc------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 120 LGIAVISLYGIQWLYGFVIFFY--PGGSTGLR------------SESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 120 lGl~t~~l~~lQ~~~G~~~fl~--p~~~~~~r------------~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
+|-++...+.+|.+-|.+--++ |....... -.++..|++.--..+++...=..-|+..
T Consensus 19 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~ 90 (246)
T d1ppjc2 19 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYY 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHh
Confidence 5888888889999999866444 43222111 1136678887777776666666666554
No 5
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=16.35 E-value=3.1e+02 Score=23.54 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=21.3
Q ss_pred CccchhhhhHHHHHHHHHHHhhhhhhhhhccC
Q 026979 112 NLYSLHSWLGIAVISLYGIQWLYGFVIFFYPG 143 (230)
Q Consensus 112 hf~S~HswlGl~t~~l~~lQ~~~G~~~fl~p~ 143 (230)
++|..-.-=|.+.+..+..+...|+..++.|.
T Consensus 51 ~Y~~~~T~Hg~~mif~f~~~~~~g~~~y~vp~ 82 (549)
T d1xmea1 51 SYYQGLTLHGVLNAIVFTQLFAQAIMVYLPAR 82 (549)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45533333355566677888889998888874
No 6
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.15 E-value=2.3e+02 Score=21.79 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=15.1
Q ss_pred chhhhhHHHHHHHHHHHhhhh
Q 026979 115 SLHSWLGIAVISLYGIQWLYG 135 (230)
Q Consensus 115 S~HswlGl~t~~l~~lQ~~~G 135 (230)
..|=.+|++.++....|..-|
T Consensus 209 g~HV~~G~i~l~~~~~~~~~~ 229 (265)
T d1m56c_ 209 GFHVIVGTIFLLVCLIRVQRG 229 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 378888888777777776544
No 7
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.13 E-value=2.6e+02 Score=21.47 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=14.9
Q ss_pred chhhhhHHHHHHHHHHHhhhh
Q 026979 115 SLHSWLGIAVISLYGIQWLYG 135 (230)
Q Consensus 115 S~HswlGl~t~~l~~lQ~~~G 135 (230)
-.|=.+|++.++....|..-|
T Consensus 203 g~HVi~G~i~l~~~~~r~~~~ 223 (259)
T d1v54c_ 203 GLHVIIGSTFLIVCFFRQLKF 223 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 367788888777777766644
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=13.34 E-value=1.1e+02 Score=16.54 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=5.0
Q ss_pred HHHHHHhh
Q 026979 25 VLVWCLGF 32 (230)
Q Consensus 25 v~~W~~~~ 32 (230)
..+|.+.+
T Consensus 19 lvfw~gv~ 26 (33)
T d1xmec1 19 LVFWLGVY 26 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34788754
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.46 E-value=3e+02 Score=21.37 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhc--cCCCccc------------ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026979 120 LGIAVISLYGIQWLYGFVIFFY--PGGSTGL------------RSESLPWHVLFGLFVYILAVANAAIGFLE 177 (230)
Q Consensus 120 lGl~t~~l~~lQ~~~G~~~fl~--p~~~~~~------------r~~~~p~H~~~G~~~~~lai~t~~lGl~e 177 (230)
+|-++...+.+|.+-|++--++ |...... ...++..|++..-..+++...=..-|+..
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~ 103 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYY 103 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHh
Confidence 5777777888888888766443 3221111 11235677777777777777666666653
No 10
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=11.55 E-value=2.1e+02 Score=19.00 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---CccccCCCCCccccccchhHHH---HHHHHHhhhhHhhhcccc----cccchhHH
Q 026979 12 FVAHAVAIVAAIMVLVWCLGFR---GGLAWEDTNKNLIFNLHPVLML---IGLIIIGGEAIMSYKGLN----LRKEVKKV 81 (230)
Q Consensus 12 ~~~~llg~~~~~lv~~W~~~~r---~G~~w~~~~~~~~Fn~HP~lM~---~gfv~L~~~aiL~~r~~~----~~k~~~k~ 81 (230)
...++-+++.+.++ .|...+- +|.+.+ .-..+--+|.--. +-++...--+-+-.|..= .+++.|+.
T Consensus 15 ~~qRvSAv~l~~l~-~~~~~~~~~~~~~~y~---~~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~~~r~~ 90 (113)
T d1nekd_ 15 ILVRATAIVLTLYI-IYMVGFFATSGELTYE---VWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLM 90 (113)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTTSSCCHH---HHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHcCCCCHH---HHHHHHhChHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCChhHHHH
Confidence 44457777766555 5654332 222221 1122333454333 333333333333344311 25667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026979 82 IHLVLHAIALILGIIGIYAAFK 103 (230)
Q Consensus 82 iH~~lq~~a~~~~~iG~~aif~ 103 (230)
.........+++++.|+.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~lw~ 112 (113)
T d1nekd_ 91 LQLVIVVALVVYVIYGFVVVWG 112 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999988764
Done!