BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026980
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3
SV=2
Length = 182
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
PNTL EPV T+ RDL I L V+ P R + LRDWDLWGP + + + LS
Sbjct: 7 PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63
Query: 162 WSASVKKSEVFAVAFALLAAGAVILTLNVLLL 193
SA +K+ F + F ++ GA I+T+N LL
Sbjct: 64 ISAEEQKALEFTIVFVVVWCGAAIVTVNGQLL 95
>sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1
Length = 233
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 93 IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFF 152
+AST +TL EPV DT+ RDL + + V++P + LRDWDLWGP
Sbjct: 38 MASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVL 93
Query: 153 IVFLGLTLSWSASVKKSE---VFAVAFALLAAGAVILTLNVLLL 193
V L L L + K + FA F ++ GAV++TLN LL
Sbjct: 94 CVSLALMLQGGNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLL 137
>sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC644.13c PE=1 SV=1
Length = 225
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 56 QSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKR 115
N+ P S+ V S + P I+G S I T F + ++L EP+ T+
Sbjct: 16 MENLLRMDPVRSSLDVESRAIEP----DNIAGES---IVETRF-TGGDSLDEPIRVTLFN 67
Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSA-SVKKSEVFAV 174
+ I L V++P + LRDWDLWGP F + + L L+ S +++ VF V
Sbjct: 68 EFRAIGEKLVYVLYPKN-----AQVLRDWDLWGPLIFSLVIALALALSTDKIERESVFTV 122
Query: 175 AFALLAAGAVILTLNVLLL 193
AL+ G + +LN+ LL
Sbjct: 123 VVALIWFGEAVCSLNIKLL 141
>sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1
Length = 240
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
+TL EPV DT+ RDL + V++P + LRDWDLWGP V L L L
Sbjct: 55 STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALMLQG 110
Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLL 193
++ + + FA F ++ G+VI+TLN LL
Sbjct: 111 GSADSEEDGRPQFAEVFVIIWFGSVIITLNSKLL 144
>sp|Q4QQU5|YIPF6_RAT Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 SV=1
Length = 236
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 84 TISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRD 143
TI G+R + +TL E + T+ RDL + V++P LRD
Sbjct: 39 TIPSGTRAQECDS------STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNTLLRD 88
Query: 144 WDLWGPFFFIVFLGLTLSWSASVKKSE----VFAVAFALLAAGAVILTLNVLLL 193
WDLWGP V L L L S+ K + FA F ++ GAV +TLN LL
Sbjct: 89 WDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVIIWFGAVTITLNSKLL 142
>sp|Q96EC8|YIPF6_HUMAN Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2
Length = 236
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
+TL E V +T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESVRNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALMLQR 107
Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLL 193
++ + + FA F ++ GAV +TLN LL
Sbjct: 108 DSADSEKDGGPQFAEVFVIVWFGAVTITLNSKLL 141
>sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1
Length = 236
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
+TL E + T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNALLRDWDLWGPLILCVTLALMLQK 107
Query: 163 SASVKKSE----VFAVAFALLAAGAVILTLNVLLL 193
S+ K++ FA F ++ GAV +TLN LL
Sbjct: 108 SSIDGKNDGGGPEFAEVFVIIWFGAVTITLNSKLL 142
>sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1
Length = 236
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
+TL E V +T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESVQNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALMLQ- 106
Query: 163 SASVKKSE----VFAVAFALLAAGAVILTLNVLLL 193
SV + FA F ++ GAV +TLN LL
Sbjct: 107 RGSVDSEKDGGPQFAEVFVIVWFGAVTITLNSKLL 141
>sp|P53093|YIP4_YEAST Protein YIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YIP4 PE=1 SV=2
Length = 235
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 86 SGGSRPNIASTGFGS-PPNTLTEPVWDTVKRDLSRIVSNLKLVVFPN------PYREDPG 138
SGG NI T S TL E V T+KRD+ I S LK VV+P+ P + G
Sbjct: 24 SGGVADNIGGTMQNSGSRGTLDETVLQTLKRDVVEINSRLKQVVYPHFPSFFSPSDDGIG 83
Query: 139 KALRD----WDLWGPFFFIVFLGLTLS 161
A D DLW P FI+ L +S
Sbjct: 84 AADNDISANCDLWAPLAFIILYSLFVS 110
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2
PE=1 SV=2
Length = 1032
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 49 VSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEP 108
+ +AP ++P P P S +K P + P LP+ +R +++ PP +P
Sbjct: 622 IRNAPSRPPSLPTPRPASQPRKAPVISSTPKLPAL----AAREEASTSRLLQPPEAPRKP 677
Query: 109 VWDTVKRDLSR---IVSNLKLVVFPN 131
+T+ + SR +V L + PN
Sbjct: 678 A-NTLVKTASRPAPLVQQLSPSLLPN 702
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,976,807
Number of Sequences: 539616
Number of extensions: 4352303
Number of successful extensions: 55038
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 1572
Number of HSP's that attempted gapping in prelim test: 31841
Number of HSP's gapped (non-prelim): 13399
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)