Query         026980
Match_columns 230
No_of_seqs    122 out of 351
Neff          4.0 
Searched_HMMs 46136
Date          Fri Mar 29 03:18:13 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026980hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2946 Uncharacterized conser 100.0 2.3E-45 4.9E-50  322.7  13.8  170   33-221     1-171 (234)
  2 KOG3103 Rab GTPase interacting 100.0 1.2E-35 2.7E-40  263.4  11.9  113  106-227    81-193 (249)
  3 COG5080 YIP1 Rab GTPase intera 100.0 2.5E-33 5.5E-38  245.3   9.0  116  103-227    55-170 (227)
  4 KOG3114 Uncharacterized conser  98.3   1E-06 2.2E-11   81.3   5.2  108  113-225    84-214 (290)
  5 PF04893 Yip1:  Yip1 domain;  I  97.8 1.5E-05 3.2E-10   63.3   2.9   83  140-227    18-121 (172)
  6 PF03878 YIF1:  YIF1;  InterPro  91.5    0.19 4.1E-06   45.5   3.4  109  115-226    45-172 (240)
  7 KOG3094 Predicted membrane pro  85.4     1.7 3.7E-05   40.5   5.3  107  117-226    94-219 (284)
  8 COG5197 Predicted membrane pro  82.1     3.7 8.1E-05   37.8   6.0  104  115-224    89-214 (284)
  9 PF09574 DUF2374:  Protein  of   76.9     1.1 2.5E-05   30.9   0.8   19  209-227    11-29  (42)
 10 KOG1924 RhoA GTPase effector D  71.5      20 0.00044   38.4   8.5    6  148-153   655-660 (1102)
 11 TIGR02808 short_TIGR02808 cons  71.3     1.6 3.4E-05   30.2   0.4   18  209-226    11-28  (42)
 12 PHA00007 E cell lysis protein   48.5      16 0.00034   28.8   2.4   20  141-160     1-20  (91)
 13 PF12238 MSA-2c:  Merozoite sur  45.3 1.4E+02   0.003   27.0   8.1   28   16-43    125-152 (205)
 14 PF02061 Lambda_CIII:  Lambda P  40.2      16 0.00035   25.5   1.1   28  103-130    14-41  (45)
 15 PF06930 DUF1282:  Protein of u  39.3      11 0.00024   31.4   0.3   40  182-226    79-119 (170)
 16 PHA01809 hypothetical protein   38.3      13 0.00027   27.4   0.4   14   16-29     37-50  (65)
 17 KOG1925 Rac1 GTPase effector F  33.2 1.1E+02  0.0024   31.7   6.2   42    7-49    200-241 (817)
 18 KOG1923 Rac1 GTPase effector F  29.7 1.6E+02  0.0035   31.6   6.8    9   41-49    282-290 (830)
 19 COG5178 PRP8 U5 snRNP spliceos  27.8      57  0.0012   37.0   3.3   12  120-131    70-81  (2365)
 20 COG4329 Predicted membrane pro  26.9 1.3E+02  0.0028   26.0   4.7   69  152-225    70-145 (160)
 21 PRK09459 pspG phage shock prot  26.0 2.2E+02  0.0047   22.1   5.3   56  150-227     4-60  (76)
 22 KOG3671 Actin regulatory prote  25.0   2E+02  0.0043   29.6   6.3   57   29-85    381-441 (569)
 23 PF15050 SCIMP:  SCIMP protein   23.9 1.4E+02  0.0031   25.2   4.3   24   16-43     51-75  (133)
 24 KOG4580 Component of vacuolar   23.8      47   0.001   27.4   1.4   20  144-163    83-102 (112)
 25 PF10225 DUF2215:  Uncharacteri  22.7 1.2E+02  0.0026   27.4   4.1   53  142-196     7-64  (249)
 26 KOG1418 Tandem pore domain K+   22.2      61  0.0013   28.9   2.0   49  140-188   110-161 (433)
 27 KOG3817 Uncharacterized conser  21.2   1E+02  0.0022   30.6   3.3   72  142-220   133-209 (452)
 28 COG5264 VTC1 Vacuolar transpor  20.7      49  0.0011   27.8   1.0   20  144-163    98-117 (126)

No 1  
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00  E-value=2.3e-45  Score=322.66  Aligned_cols=170  Identities=46%  Similarity=0.651  Sum_probs=144.5

Q ss_pred             cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 026980           33 VLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDT  112 (230)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~dTLDEPLlET  112 (230)
                      +.++|+++++| .|+++++    +.+..|-.+.   .. ..++.++|-..++|+|.     +.....+++||||||||||
T Consensus         1 ~~~~~~~s~~~-~s~~~~s----~t~~ep~~~s---~~-~~~~~~~p~~~a~n~g~-----g~~~~~~e~dTldePv~~t   66 (234)
T KOG2946|consen    1 VLDPRPHSPER-PSIEMES----QTMLEPVFAS---PS-VEAPASAPGNSAGNSGF-----GWLLEVNEEDTLDEPVLET   66 (234)
T ss_pred             CCCCCCCCCCC-CCcCccC----cccCCccccC---cc-ccCCCCCCcccccccCc-----ccccccCCCCcccchHHHH
Confidence            46789999999 9999987    2333321111   11 22345556667776664     4456788999999999999


Q ss_pred             HHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccCCCCCeeEeeehhHHHHHHHHHHHHHHh
Q 026980          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLL  192 (230)
Q Consensus       113 LgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk~~~~~vFg~If~i~~lGaivltLN~~L  192 (230)
                      |+||+.+|+.|+++||+|+.+++|+++.+|||||||||+||+.+|++|++++..+...+|+.+|++.|+|++++|+|+||
T Consensus        67 lkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~i~wfG~~vvtln~kL  146 (234)
T KOG2946|consen   67 LKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFAILWFGAVVVTLNIKL  146 (234)
T ss_pred             HHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998889999999999999999999999999999987666689999999999999999999999


Q ss_pred             hccc-cccCCCCCceEEEehhhhhHHHHHH
Q 026980          193 LVIL-SLSTAPPPFSVSVVGMALSLLPICF  221 (230)
Q Consensus       193 LGG~-s~~~~~~~qsvSVLGYCLLPlvila  221 (230)
                      |||+ +|+     |++||+||||+|+++.|
T Consensus       147 LGgnIs~f-----Qsl~IlGYCLfPl~v~a  171 (234)
T KOG2946|consen  147 LGGNISFF-----QSLCILGYCLFPLVVAA  171 (234)
T ss_pred             hCCceeEE-----eehhhhhhcccHHHHHH
Confidence            9999 887     99999999999999987


No 2  
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00  E-value=1.2e-35  Score=263.35  Aligned_cols=113  Identities=19%  Similarity=0.304  Sum_probs=102.6

Q ss_pred             CcchHHHHHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccCCCCCeeEeeehhHHHHHHHH
Q 026980          106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVI  185 (230)
Q Consensus       106 DEPLlETLgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk~~~~~vFg~If~i~~lGaiv  185 (230)
                      |||+|||||||++|||+|+++||+|++  ..+.++++|.||||||+||++|+++|+++|    |.||||||+++.+|++.
T Consensus        81 EpPLLEELgInf~hI~~KT~~VLnP~r--~~~q~i~~d~DlaGPlvf~L~f~~flLl~g----Ki~FgyIygi~~~gsl~  154 (249)
T KOG3103|consen   81 EPPLLEELGINFDHIKQKTRAVLNPFR--SADQSIMKDTDLAGPLVFCLLFGLFLLLAG----KIHFGYIYGISLLGSLS  154 (249)
T ss_pred             CCchHHHhCCCHHHHHHHHhheecccc--cCceEEecCcccccchHHHHHHHHHHHhcC----ceEEEEEeeeHHHHHHH
Confidence            559999999999999999999999985  456889999999999999999999999998    58999999999999999


Q ss_pred             HHHHHHhhccccccCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          186 LTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       186 ltLN~~LLGG~s~~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      +++.+++|+-+.+.|.   +|+|||||||||||++|.++++.
T Consensus       155 iy~L~nlm~~~nv~f~---~~aSVlGYcLLPlvvlS~v~i~~  193 (249)
T KOG3103|consen  155 IYFLLNLMSNKNVSFG---CVASVLGYCLLPLVVLSFVNIFV  193 (249)
T ss_pred             HHHHHHHHhhcCccee---eehHHHHHHHHHHHHHHHHHHHH
Confidence            9999999994433333   99999999999999999999863


No 3  
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=100.00  E-value=2.5e-33  Score=245.35  Aligned_cols=116  Identities=25%  Similarity=0.337  Sum_probs=105.8

Q ss_pred             CCCCcchHHHHHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccCCCCCeeEeeehhHHHHH
Q 026980          103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAG  182 (230)
Q Consensus       103 dTLDEPLlETLgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk~~~~~vFg~If~i~~lG  182 (230)
                      ...|||++|||++||.+|++|+..|+.|++  ..+.++++||||||||+||++|+++|++++|    .||||||++.|+|
T Consensus        55 ~p~d~pLleel~i~F~~i~~ks~~vl~p~~--~~~~~i~~d~DL~gPliF~lL~sLfLsla~~----shFgyiy~islfg  128 (227)
T COG5080          55 YPGDPPLLEELGINFGHIKSKSDDVLGPFD--NKAFDILADCDLWGPLIFILLYSLFLSLAGK----SHFGYIYGISLFG  128 (227)
T ss_pred             CCCCccHHHHhcccccccccccceeeeccc--ccchhhhhcccccccHHHHHHHHHHHHhccc----ceeehhhHHHHHH
Confidence            556999999999999999999999999985  3457899999999999999999999999974    7999999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          183 AVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       183 aivltLN~~LLGG~s~~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      .++++++.||||-+.++|+   +|+||||||++|+|+.|+++++.
T Consensus       129 ~lsl~~~lrLl~~~ni~f~---~~~SIlGYs~lPlv~~slv~~i~  170 (227)
T COG5080         129 TLSLHLLLRLLGHKNISFF---STISILGYSLLPLVFNSLVSIIL  170 (227)
T ss_pred             HHHHHHHHHHhccCceeee---ehhHHhhhhHHHHHHHHHHHHHH
Confidence            9999999999996644443   99999999999999999999874


No 4  
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27  E-value=1e-06  Score=81.26  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             HHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccC--------CCCCeeEeeehhHHHHHHH
Q 026980          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS--------VKKSEVFAVAFALLAAGAV  184 (230)
Q Consensus       113 LgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk--------~~~~~vFg~If~i~~lGai  184 (230)
                      +..|..++.+|++..|.|+++  ...+.=.+.|||||+++|.++-+.|.+++.        ..++...++-|..+..++.
T Consensus        84 FdVDt~qV~~Rl~~SliP~~~--~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~saa~  161 (290)
T KOG3114|consen   84 FDVDTAQVRKRLKESLIPRNY--VRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTSAAT  161 (290)
T ss_pred             cCCCHHHHHHHHHHhcCCccc--cccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHHHHH
Confidence            467999999999999999432  122222457999999999999999988762        1233456665555444444


Q ss_pred             HHH--H-H--------HHhhc-cc---cccCCCCCceEEEehhhhhHHHHHHHHHH
Q 026980          185 ILT--L-N--------VLLLV-IL---SLSTAPPPFSVSVVGMALSLLPICFLLDA  225 (230)
Q Consensus       185 vlt--L-N--------~~LLG-G~---s~~~~~~~qsvSVLGYCLLPlvilall~~  225 (230)
                      +++  + +        ++..| +.   -+.++   .++||.||+++...-+.++.+
T Consensus       162 ~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~---~~~~iygysl~i~ip~~vl~i  214 (290)
T KOG3114|consen  162 LIYGYLTIVPLALWGILSWNGYSLLLHCYVLL---ELVCIYGYSLFIFIPLLVLWI  214 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccceehh---hHHHHHhhHHHHHHHHHHHHh
Confidence            333  1 1        11122 11   12122   688999999987776555544


No 5  
>PF04893 Yip1:  Yip1 domain;  InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=97.80  E-value=1.5e-05  Score=63.33  Aligned_cols=83  Identities=23%  Similarity=0.127  Sum_probs=59.5

Q ss_pred             cccccchhhHHHHHHHHHHHHhhccCC-------------CCCeeEeee-------hhHHHHHHHHHHHHHHhhccc-cc
Q 026980          140 ALRDWDLWGPFFFIVFLGLTLSWSASV-------------KKSEVFAVA-------FALLAAGAVILTLNVLLLVIL-SL  198 (230)
Q Consensus       140 ~LrDwDLWGPLlFcLlLal~Lslsgk~-------------~~~~vFg~I-------f~i~~lGaivltLN~~LLGG~-s~  198 (230)
                      ..+.||++++++.++.+...+......             +....++.+       ....++.+.++++..|++||+ ++
T Consensus        18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~gg~~~~   97 (172)
T PF04893_consen   18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFGGKGSF   97 (172)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            446899999999998888877666210             111212221       133455566677788899998 88


Q ss_pred             cCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          199 STAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       199 ~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      .     ++.|+.|||++|+++..++.++.
T Consensus        98 ~-----~~~~~~~ya~~P~~~~~~~~~~~  121 (172)
T PF04893_consen   98 K-----ETFSVVGYALIPLLLGSLISIIL  121 (172)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7     99999999999999999888753


No 6  
>PF03878 YIF1:  YIF1;  InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=91.48  E-value=0.19  Score=45.53  Aligned_cols=109  Identities=24%  Similarity=0.265  Sum_probs=71.0

Q ss_pred             hhHHHHHHhccceeccCCCCC-----------CCCCcccccchhhHHHHHHHHHHHHhhc-c-CCCCC-eeEe----eeh
Q 026980          115 RDLSRIVSNLKLVVFPNPYRE-----------DPGKALRDWDLWGPFFFIVFLGLTLSWS-A-SVKKS-EVFA----VAF  176 (230)
Q Consensus       115 RD~~~I~~Kl~~VL~P~~~~~-----------~~~~~LrDwDLWGPLlFcLlLal~Lsls-g-k~~~~-~vFg----~If  176 (230)
                      .|=.=|.+|++.+++|+..+.           ...+.+.-.||-=|+.-+++|-++-.+. | +.+++ ++++    ..+
T Consensus        45 V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al  124 (240)
T PF03878_consen   45 VDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSAL  124 (240)
T ss_pred             CCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            455668999999999985321           0134455689999999998887765432 2 22233 3333    344


Q ss_pred             hHHHHHHHHHHHHHHhhccc-cccCCCCCceEEEehhhhhHHHHHHHHHHh
Q 026980          177 ALLAAGAVILTLNVLLLVIL-SLSTAPPPFSVSVVGMALSLLPICFLLDAA  226 (230)
Q Consensus       177 ~i~~lGaivltLN~~LLGG~-s~~~~~~~qsvSVLGYCLLPlvilall~~~  226 (230)
                      +++.+=.+++.+..-+++.. +..+.   -.+|..||-..+++++-++..+
T Consensus       125 ~~~~lEv~i~k~~~y~l~~~~~~~~l---Dlvay~GYKfv~ii~~~l~~~l  172 (240)
T PF03878_consen  125 VWWFLEVLIIKLGLYLLNISSSLPIL---DLVAYSGYKFVGIILTLLASLL  172 (240)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCHH---HHHHhhcchHHHHHHHHHHHHH
Confidence            44444455666777777773 33322   6789999999999887777654


No 7  
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=85.42  E-value=1.7  Score=40.48  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             HHHHHHhccceeccCCCCC----C-------CCCcccccchhhHHHHHHHHHHHHhhc-c-CCCCC-eeEeeehhHHHHH
Q 026980          117 LSRIVSNLKLVVFPNPYRE----D-------PGKALRDWDLWGPFFFIVFLGLTLSWS-A-SVKKS-EVFAVAFALLAAG  182 (230)
Q Consensus       117 ~~~I~~Kl~~VL~P~~~~~----~-------~~~~LrDwDLWGPLlFcLlLal~Lsls-g-k~~~~-~vFg~If~i~~lG  182 (230)
                      =.=+.+|++.|++|+..++    .       ..+.+.-.||.=|+.-.++|-++.-+. | +.+++ +.+++.+.-..++
T Consensus        94 n~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg~~~s~al~~  173 (284)
T KOG3094|consen   94 NAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALGILASKALAW  173 (284)
T ss_pred             hHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence            3457899999999985321    1       123566679999998777776654322 1 22344 6777766544444


Q ss_pred             HHH---HHH-HHHhhccc-cccCCCCCceEEEehhhhhHHHHHHHHHHh
Q 026980          183 AVI---LTL-NVLLLVIL-SLSTAPPPFSVSVVGMALSLLPICFLLDAA  226 (230)
Q Consensus       183 aiv---ltL-N~~LLGG~-s~~~~~~~qsvSVLGYCLLPlvilall~~~  226 (230)
                      .++   ++. -.-+++-+ ++.+.   ..+|--||-+..|+++.+...+
T Consensus       174 v~le~l~l~l~lY~l~vs~~ls~l---dllAysGYKfv~liL~~L~k~~  219 (284)
T KOG3094|consen  174 VILEVLLLKLGLYLLNVSSSLSTL---DLLAYSGYKFVGLILAQLTKLL  219 (284)
T ss_pred             HHHHHHHHHHHHheecccCCcchh---HhhhhcccchHHHHHHHHhhhe
Confidence            333   222 22223332 34333   7788899999999988777654


No 8  
>COG5197 Predicted membrane protein [Function unknown]
Probab=82.07  E-value=3.7  Score=37.83  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             hhHHHHHHhccceeccCCCCC----CC-------CCcccccchhhHHHHHHHHHHHHhhc-c-CCCCC-eeEeeehhHHH
Q 026980          115 RDLSRIVSNLKLVVFPNPYRE----DP-------GKALRDWDLWGPFFFIVFLGLTLSWS-A-SVKKS-EVFAVAFALLA  180 (230)
Q Consensus       115 RD~~~I~~Kl~~VL~P~~~~~----~~-------~~~LrDwDLWGPLlFcLlLal~Lsls-g-k~~~~-~vFg~If~i~~  180 (230)
                      .|=+-+.+|++.+++|+.+++    .+       .+.+...|+.=|+.=.+++-+++..- | |..+. +.|++.+.-.+
T Consensus        89 V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~  168 (284)
T COG5197          89 VSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTL  168 (284)
T ss_pred             echHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHH
Confidence            455668899999999986421    11       23467789999999888887765432 2 33343 67777766555


Q ss_pred             HHHHHHHHHHHhhcc------c--cccCCCCCceEEEehhhhhHHHHHHHHH
Q 026980          181 AGAVILTLNVLLLVI------L--SLSTAPPPFSVSVVGMALSLLPICFLLD  224 (230)
Q Consensus       181 lGaivltLN~~LLGG------~--s~~~~~~~qsvSVLGYCLLPlvilall~  224 (230)
                      +--++-.+..++ |+      +  ++-     ..+|-.||=+.|++++.+..
T Consensus       169 a~v~v~~l~trl-g~Yll~~s~~~~~l-----dllaysGYKfV~liL~qL~k  214 (284)
T COG5197         169 AFVCVDLLITRL-GLYLLIDSKIPSFL-----DLLAYSGYKFVPLILAQLLK  214 (284)
T ss_pred             HHHHHHHHHHHh-ceEEEeecccchhh-----hhhhhcccccHHHHHHHHhh
Confidence            444444444444 44      1  221     56788999999999988876


No 9  
>PF09574 DUF2374:  Protein  of unknown function (Duf2374);  InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=76.87  E-value=1.1  Score=30.86  Aligned_cols=19  Identities=26%  Similarity=0.158  Sum_probs=16.0

Q ss_pred             EehhhhhHHHHHHHHHHhh
Q 026980          209 VVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       209 VLGYCLLPlvilall~~~~  227 (230)
                      ||||+-+|+++++.+.+++
T Consensus        11 vLGY~AmPvI~L~GF~~Va   29 (42)
T PF09574_consen   11 VLGYAAMPVIILSGFAAVA   29 (42)
T ss_pred             HhccccchHHHHhhHHHHH
Confidence            7999999999998876543


No 10 
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.49  E-value=20  Score=38.40  Aligned_cols=6  Identities=17%  Similarity=0.191  Sum_probs=2.2

Q ss_pred             hHHHHH
Q 026980          148 GPFFFI  153 (230)
Q Consensus       148 GPLlFc  153 (230)
                      -.=+||
T Consensus       655 n~dlfa  660 (1102)
T KOG1924|consen  655 NDDLFA  660 (1102)
T ss_pred             chHHHH
Confidence            333333


No 11 
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=71.31  E-value=1.6  Score=30.16  Aligned_cols=18  Identities=22%  Similarity=0.067  Sum_probs=15.2

Q ss_pred             EehhhhhHHHHHHHHHHh
Q 026980          209 VVGMALSLLPICFLLDAA  226 (230)
Q Consensus       209 VLGYCLLPlvilall~~~  226 (230)
                      ||||+-+|++|++.+..+
T Consensus        11 ilGY~AmPvIil~GF~~V   28 (42)
T TIGR02808        11 VLGYGAMPFIILSGFVAV   28 (42)
T ss_pred             HhcccccchHHhhhhHHH
Confidence            689999999999876544


No 12 
>PHA00007 E cell lysis protein
Probab=48.55  E-value=16  Score=28.83  Aligned_cols=20  Identities=30%  Similarity=0.718  Sum_probs=18.0

Q ss_pred             ccccchhhHHHHHHHHHHHH
Q 026980          141 LRDWDLWGPFFFIVFLGLTL  160 (230)
Q Consensus       141 LrDwDLWGPLlFcLlLal~L  160 (230)
                      |+.|-|||=|.|.++++++|
T Consensus         1 Me~WTL~~~LAFLLLLSLlL   20 (91)
T PHA00007          1 MEHWTLSDTLAFLLLLSLLL   20 (91)
T ss_pred             CceeeHHHHHHHHHHHHHHH
Confidence            46799999999999999986


No 13 
>PF12238 MSA-2c:  Merozoite surface antigen 2c;  InterPro: IPR021060  This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=45.27  E-value=1.4e+02  Score=26.96  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=21.7

Q ss_pred             CCCHHHHHHHHhhCCCccCCCCCCCCCC
Q 026980           16 QSDIDEIENLINASPATVLPARPPSPPR   43 (230)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (230)
                      ..+.|+.|.|+...|+.....+++++-+
T Consensus       125 ~~~~~~f~elVkk~p~~~ss~~~sS~q~  152 (205)
T PF12238_consen  125 YKAFNTFEELVKKKPAQPSSPTPSSPQG  152 (205)
T ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCCCC
Confidence            3467888889999988877777777765


No 14 
>PF02061 Lambda_CIII:  Lambda Phage CIII;  InterPro: IPR013056  Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=40.17  E-value=16  Score=25.48  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             CCCCcchHHHHHhhHHHHHHhccceecc
Q 026980          103 NTLTEPVWDTVKRDLSRIVSNLKLVVFP  130 (230)
Q Consensus       103 dTLDEPLlETLgRD~~~I~~Kl~~VL~P  130 (230)
                      ..|.|+++|-+-|.+++=|+|+-.+|+.
T Consensus        14 ~ql~ESLLdrItRklr~gwKRl~~iLnQ   41 (45)
T PF02061_consen   14 PQLSESLLDRITRKLRDGWKRLWDILNQ   41 (45)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999998875


No 15 
>PF06930 DUF1282:  Protein of unknown function (DUF1282);  InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=39.28  E-value=11  Score=31.36  Aligned_cols=40  Identities=10%  Similarity=-0.060  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhhccc-cccCCCCCceEEEehhhhhHHHHHHHHHHh
Q 026980          182 GAVILTLNVLLLVIL-SLSTAPPPFSVSVVGMALSLLPICFLLDAA  226 (230)
Q Consensus       182 GaivltLN~~LLGG~-s~~~~~~~qsvSVLGYCLLPlvilall~~~  226 (230)
                      .+.+++...+-.+++ ++.     +++-..+|.+.|+.+..+++.+
T Consensus        79 ~a~~i~~~~~~~~~~~s~~-----~~~~~a~y~~tPl~L~~i~~~~  119 (170)
T PF06930_consen   79 MAYLIHWMMKTFGGRPSYK-----KCLAFAAYAATPLFLGGIVNLY  119 (170)
T ss_pred             HHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666667777 765     8899999999999987776643


No 16 
>PHA01809 hypothetical protein
Probab=38.31  E-value=13  Score=27.38  Aligned_cols=14  Identities=57%  Similarity=0.738  Sum_probs=12.1

Q ss_pred             CCCHHHHHHHHhhC
Q 026980           16 QSDIDEIENLINAS   29 (230)
Q Consensus        16 ~~~~~~~~~~~~~~   29 (230)
                      .-||||||.|-|.|
T Consensus        37 dvdideiedlnhns   50 (65)
T PHA01809         37 DVDIDEIEDLNHNS   50 (65)
T ss_pred             ecChHHhhhcccch
Confidence            46999999998877


No 17 
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=33.23  E-value=1.1e+02  Score=31.68  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCHHHHHHHHhhCCCccCCCCCCCCCCCCCCCc
Q 026980            7 DTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPV   49 (230)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (230)
                      .+-|+.-.-|+-|.|+..--..+ .++-+..|+.|+.|..||.
T Consensus       200 ~~~P~~~~~~s~~~~~~~~~~R~-~~~~~~~P~~P~~P~~~P~  241 (817)
T KOG1925|consen  200 ETAPAARTPQSPAPCVLLRAQRS-LAPEPKEPLIPASPKELPT  241 (817)
T ss_pred             ccChHhhCcCCCchHHHHhhhhc-CCCCCCCCCCCCChhccCC
Confidence            45677777788888886555555 5566667777777677876


No 18 
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=29.73  E-value=1.6e+02  Score=31.56  Aligned_cols=9  Identities=56%  Similarity=1.213  Sum_probs=3.7

Q ss_pred             CCCCCCCCc
Q 026980           41 PPRPATIPV   49 (230)
Q Consensus        41 ~~~~~~~~~   49 (230)
                      ||.||+.|-
T Consensus       282 ppppap~p~  290 (830)
T KOG1923|consen  282 PPPPAPLPH  290 (830)
T ss_pred             CCCCCCCCC
Confidence            333344443


No 19 
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=27.85  E-value=57  Score=36.97  Aligned_cols=12  Identities=8%  Similarity=-0.175  Sum_probs=8.5

Q ss_pred             HHHhccceeccC
Q 026980          120 IVSNLKLVVFPN  131 (230)
Q Consensus       120 I~~Kl~~VL~P~  131 (230)
                      .+.|+.+|+.+.
T Consensus        70 ~kak~~~v~t~k   81 (2365)
T COG5178          70 NKAKTLHVLTLK   81 (2365)
T ss_pred             hhhhheeeeccC
Confidence            356788888775


No 20 
>COG4329 Predicted membrane protein [Function unknown]
Probab=26.90  E-value=1.3e+02  Score=25.97  Aligned_cols=69  Identities=22%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhhccCCCCCeeEe--eehhHHHHHHHHH-----HHHHHhhccccccCCCCCceEEEehhhhhHHHHHHHHH
Q 026980          152 FIVFLGLTLSWSASVKKSEVFA--VAFALLAAGAVIL-----TLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLD  224 (230)
Q Consensus       152 FcLlLal~Lslsgk~~~~~vFg--~If~i~~lGaivl-----tLN~~LLGG~s~~~~~~~qsvSVLGYCLLPlvilall~  224 (230)
                      +....++++++..+-++..+.+  |+++-.|+|+-..     |+|-|+||-...-     .++.++-|-+-=+|.-++.-
T Consensus        70 v~tv~Gl~~lwr~grr~~~~wSa~~~~G~ll~GaGlFnl~eGtinHqilgiHhv~-----~~v~~i~wD~gflvlgalmv  144 (160)
T COG4329          70 VATVGGLFMLWRLGRRKTFQWSAKYWWGGLLLGAGLFNLYEGTINHQILGIHHVR-----YVVNVIVWDFGFLVLGALMV  144 (160)
T ss_pred             HHHHHHHHHHHHhcCCCcceeehhhhhhhhhhcccchheeehhhhhhhheeeeec-----ccceeeeehhHHHHHHHHHH
Confidence            5667788888876555567778  8888888888755     4699999887776     67888888776666555443


Q ss_pred             H
Q 026980          225 A  225 (230)
Q Consensus       225 ~  225 (230)
                      +
T Consensus       145 i  145 (160)
T COG4329         145 I  145 (160)
T ss_pred             H
Confidence            3


No 21 
>PRK09459 pspG phage shock protein G; Reviewed
Probab=26.02  E-value=2.2e+02  Score=22.12  Aligned_cols=56  Identities=14%  Similarity=0.047  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhhccCCCCCeeEeeehhHHHHHHHHHHHHHHhhccc-cccCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          150 FFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVIL-SLSTAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       150 LlFcLlLal~Lslsgk~~~~~vFg~If~i~~lGaivltLN~~LLGG~-s~~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      ++|.+.+..+|...|          |=.++.+.++.+...+.++||- .+-            -=|+|=.+++++.+-.
T Consensus         4 llFvl~F~~~LlvTG----------iSllgv~aAl~va~~vM~l~Gm~~lv------------iKLLPWLil~~v~vW~   60 (76)
T PRK09459          4 LLFVIGFFVMLLVTG----------ISLLGIIAALGVATLVMFLGGMFALM------------IKLLPWLLLAVVVVWV   60 (76)
T ss_pred             hHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence            678888888888886          3345556666777777788875 332            2378888877766543


No 22 
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=25.01  E-value=2e+02  Score=29.55  Aligned_cols=57  Identities=33%  Similarity=0.751  Sum_probs=0.0

Q ss_pred             CCCccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCC
Q 026980           29 SPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPT----SSNQKVPSVPVPPPLPSSTI   85 (230)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   85 (230)
                      ++.++.+..++..+-|+-.|+-....++..+||+||+    .+.+.-++.+.+||.|++|.
T Consensus       381 ~s~~~~~p~~Pgr~aPp~PP~~~ps~~p~~PpPPPPs~~g~~Pp~apPppPPPPPmPs~ga  441 (569)
T KOG3671|consen  381 RSRAVSPPAPPGRPAPPPPPLGNPSAVPVPPPPPPPSLPGSAPPSAPPPPPPPPPMPSTGA  441 (569)
T ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcCCCCCccCC


No 23 
>PF15050 SCIMP:  SCIMP protein
Probab=23.89  E-value=1.4e+02  Score=25.19  Aligned_cols=24  Identities=50%  Similarity=0.930  Sum_probs=17.0

Q ss_pred             CCCHHHH-HHHHhhCCCccCCCCCCCCCC
Q 026980           16 QSDIDEI-ENLINASPATVLPARPPSPPR   43 (230)
Q Consensus        16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   43 (230)
                      |-|++++ ||.+|.+|.    +-||.|||
T Consensus        51 ~rdeEkmYENv~n~~~~----~LPpLPPR   75 (133)
T PF15050_consen   51 QRDEEKMYENVLNQSPV----QLPPLPPR   75 (133)
T ss_pred             cccHHHHHHHhhcCCcC----CCCCCCCC
Confidence            5577765 889988854    34677777


No 24 
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=23.83  E-value=47  Score=27.41  Aligned_cols=20  Identities=30%  Similarity=0.262  Sum_probs=16.9

Q ss_pred             cchhhHHHHHHHHHHHHhhc
Q 026980          144 WDLWGPFFFIVFLGLTLSWS  163 (230)
Q Consensus       144 wDLWGPLlFcLlLal~Lsls  163 (230)
                      -|-|||.++|..+-..|..+
T Consensus        83 Dd~~GP~~v~~vl~valivN  102 (112)
T KOG4580|consen   83 DDRLGPTLVCVVLLVALIVN  102 (112)
T ss_pred             CCcccchHHHHHHHHHHHHH
Confidence            48999999999998887654


No 25 
>PF10225 DUF2215:  Uncharacterized conserved protein (DUF2215);  InterPro: IPR024233  This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins. 
Probab=22.74  E-value=1.2e+02  Score=27.42  Aligned_cols=53  Identities=25%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             cccchhhHHHHHHHHHHHHhhccCC-CCCeeEee----ehhHHHHHHHHHHHHHHhhccc
Q 026980          142 RDWDLWGPFFFIVFLGLTLSWSASV-KKSEVFAV----AFALLAAGAVILTLNVLLLVIL  196 (230)
Q Consensus       142 rDwDLWGPLlFcLlLal~Lslsgk~-~~~~vFg~----If~i~~lGaivltLN~~LLGG~  196 (230)
                      ++.|.|  .++++++|++|.+.++. .++..|=|    ..|+....-+++++..|++-.+
T Consensus         7 ~~~d~~--r~~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~~k~lPrk   64 (249)
T PF10225_consen    7 EEFDFW--RVAQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQLSKLLPRK   64 (249)
T ss_pred             EEEcHH--HHHHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHHHHHccCc
Confidence            345666  56666667777666532 33455543    4555555555666677777654


No 26 
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=22.22  E-value=61  Score=28.90  Aligned_cols=49  Identities=16%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             cccccchhhHHHHHHHHHHHHhhcc---CCCCCeeEeeehhHHHHHHHHHHH
Q 026980          140 ALRDWDLWGPFFFIVFLGLTLSWSA---SVKKSEVFAVAFALLAAGAVILTL  188 (230)
Q Consensus       140 ~LrDwDLWGPLlFcLlLal~Lslsg---k~~~~~vFg~If~i~~lGaivltL  188 (230)
                      .-..||+|+=++||.+.-.+.-+..   ....+.+|..+|+++-+.-.++++
T Consensus       110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l  161 (433)
T KOG1418|consen  110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLIL  161 (433)
T ss_pred             CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHH
Confidence            4457999999999998877765542   122346788888877665554444


No 27 
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.21  E-value=1e+02  Score=30.61  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=38.2

Q ss_pred             cccchhhHHHHHHHHHHHHhhccC-CCCCeeEee----ehhHHHHHHHHHHHHHHhhccccccCCCCCceEEEehhhhhH
Q 026980          142 RDWDLWGPFFFIVFLGLTLSWSAS-VKKSEVFAV----AFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSL  216 (230)
Q Consensus       142 rDwDLWGPLlFcLlLal~Lslsgk-~~~~~vFg~----If~i~~lGaivltLN~~LLGG~s~~~~~~~qsvSVLGYCLLP  216 (230)
                      +.-|+|==+  +.+.|++|++.|. -.++.+|=|    ++|+..---+++++..+++--++..     -.+=|=|++..-
T Consensus       133 ~r~d~krfl--vfv~gi~Lff~ar~Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt~~-----~~iliGgWs~sl  205 (452)
T KOG3817|consen  133 IRLDLKRFL--VFVVGILLFFSARRLSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKTMM-----YGILIGGWSISL  205 (452)
T ss_pred             EeccHHHHH--HHHHHHHHHHHHHHhccCceEEEecccHHHHHHHHHHHHHHHHHhcccccce-----EEEEEccchhHH
Confidence            346888544  4445566666553 234567765    4444444444556667776555554     234444555444


Q ss_pred             HHHH
Q 026980          217 LPIC  220 (230)
Q Consensus       217 lvil  220 (230)
                      -+|.
T Consensus       206 Y~i~  209 (452)
T KOG3817|consen  206 YVIK  209 (452)
T ss_pred             HHHH
Confidence            4433


No 28 
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.69  E-value=49  Score=27.80  Aligned_cols=20  Identities=30%  Similarity=0.262  Sum_probs=17.0

Q ss_pred             cchhhHHHHHHHHHHHHhhc
Q 026980          144 WDLWGPFFFIVFLGLTLSWS  163 (230)
Q Consensus       144 wDLWGPLlFcLlLal~Lsls  163 (230)
                      -|-|||.+.|+.|.+.+..+
T Consensus        98 DD~~GP~lv~vvL~valivN  117 (126)
T COG5264          98 DDRLGPTLVCVVLLVALIVN  117 (126)
T ss_pred             ccccCCchhHHHHHHHHHHH
Confidence            48999999999998887665


Done!