Query 026980
Match_columns 230
No_of_seqs 122 out of 351
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_C SECE; RECA-type ATPase 25.4 84 0.0029 21.8 4.0 21 112-132 3-23 (65)
2 1oef_A Apolipoprotein E; glyco 20.5 59 0.002 18.8 2.0 20 107-126 4-23 (26)
3 2lpy_A Matrix protein P10; GAG 15.1 1.2E+02 0.004 24.2 3.1 32 99-130 44-75 (124)
4 3din_D Preprotein translocase 13.9 89 0.003 21.6 1.9 21 112-132 3-23 (65)
5 1txp_A HnRNP C, heterogeneous 12.5 96 0.0033 19.0 1.5 19 110-128 1-19 (28)
6 1bax_A M-PMV MA, M-PMV matrix 10.5 1.6E+02 0.0056 22.4 2.6 31 100-130 46-76 (94)
7 1a92_A Delta antigen; leucine 10.4 1.3E+02 0.0045 20.6 1.8 17 110-126 16-32 (50)
8 3arc_Y Protein YCF12; PSII, me 10.3 1.5E+02 0.005 18.2 1.8 11 146-156 13-23 (29)
9 3bo0_B Preprotein translocase 9.7 2.1E+02 0.0073 19.2 2.8 22 111-132 4-25 (65)
10 1a93_B MAX protein, coiled coi 9.4 60 0.0021 20.7 -0.2 9 16-24 13-21 (34)
No 1
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=25.43 E-value=84 Score=21.77 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhccceeccCC
Q 026980 112 TVKRDLSRIVSNLKLVVFPNP 132 (230)
Q Consensus 112 TLgRD~~~I~~Kl~~VL~P~~ 132 (230)
-+.+-++++++.++.|.+|.+
T Consensus 3 k~~~f~~~v~~ElkKV~WPtr 23 (65)
T 3dl8_C 3 KLKEFLKGVRDELKRVVWPSR 23 (65)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHhcccCcCH
Confidence 355678899999999999974
No 2
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.54 E-value=59 Score=18.76 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.5
Q ss_pred cchHHHHHhhHHHHHHhccc
Q 026980 107 EPVWDTVKRDLSRIVSNLKL 126 (230)
Q Consensus 107 EPLlETLgRD~~~I~~Kl~~ 126 (230)
+|..|.+++.+..|++|+..
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 58899999999999998764
No 3
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=15.13 E-value=1.2e+02 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=25.1
Q ss_pred CCCCCCCCcchHHHHHhhHHHHHHhccceecc
Q 026980 99 GSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFP 130 (230)
Q Consensus 99 ~~~~dTLDEPLlETLgRD~~~I~~Kl~~VL~P 130 (230)
=.+++|||.--|+-+|+++++.++.-.-.-.|
T Consensus 44 Fp~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP 75 (124)
T 2lpy_A 44 FPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVP 75 (124)
T ss_dssp CTTTCCCCSHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 35678899999999999999988765544444
No 4
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=13.87 E-value=89 Score=21.64 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=12.5
Q ss_pred HHHhhHHHHHHhccceeccCC
Q 026980 112 TVKRDLSRIVSNLKLVVFPNP 132 (230)
Q Consensus 112 TLgRD~~~I~~Kl~~VL~P~~ 132 (230)
-+.+-++++++.++.|.+|.+
T Consensus 3 ~~~~f~~~v~~ElkKV~WPtr 23 (65)
T 3din_D 3 KLRKFFREVIAEAKKISWPSR 23 (65)
T ss_dssp -------CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCcCH
Confidence 355667888999999999974
No 5
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=12.53 E-value=96 Score=18.96 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHHHhcccee
Q 026980 110 WDTVKRDLSRIVSNLKLVV 128 (230)
Q Consensus 110 lETLgRD~~~I~~Kl~~VL 128 (230)
+.++++.+.+|++|.-..|
T Consensus 1 lQ~IkkELtQIK~kvDsLL 19 (28)
T 1txp_A 1 IQAIKKELTQIKQKVDSLL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4688999999999875543
No 6
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=10.51 E-value=1.6e+02 Score=22.39 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred CCCCCCCcchHHHHHhhHHHHHHhccceecc
Q 026980 100 SPPNTLTEPVWDTVKRDLSRIVSNLKLVVFP 130 (230)
Q Consensus 100 ~~~dTLDEPLlETLgRD~~~I~~Kl~~VL~P 130 (230)
.+++|+|--.|+-+|+|+++.+..-...-.|
T Consensus 46 p~eGtl~l~~W~kVG~~L~~~~~~~g~~~ip 76 (94)
T 1bax_A 46 PQEGTIDIKRWRRVGDCFQDYYNTFGPEKVP 76 (94)
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 4677999999999999999988665443344
No 7
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=10.44 E-value=1.3e+02 Score=20.60 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.6
Q ss_pred HHHHHhhHHHHHHhccc
Q 026980 110 WDTVKRDLSRIVSNLKL 126 (230)
Q Consensus 110 lETLgRD~~~I~~Kl~~ 126 (230)
+|+|.||+..+++|++-
T Consensus 16 ~eeler~lrk~kk~iKk 32 (50)
T 1a92_A 16 LEELERDLRKLKKKIKK 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 58999999999998764
No 8
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=10.26 E-value=1.5e+02 Score=18.21 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=7.9
Q ss_pred hhhHHHHHHHH
Q 026980 146 LWGPFFFIVFL 156 (230)
Q Consensus 146 LWGPLlFcLlL 156 (230)
++||+++.++.
T Consensus 13 ~aGP~VI~lLa 23 (29)
T 3arc_Y 13 IAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred hcCChheeehh
Confidence 57888877654
No 9
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=9.69 E-value=2.1e+02 Score=19.23 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=18.0
Q ss_pred HHHHhhHHHHHHhccceeccCC
Q 026980 111 DTVKRDLSRIVSNLKLVVFPNP 132 (230)
Q Consensus 111 ETLgRD~~~I~~Kl~~VL~P~~ 132 (230)
..+..-++++++.++.|++|.+
T Consensus 4 ~~~~~f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 4 KATVAFAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTT
T ss_pred chHHHHHHHHHHHHhheeccCC
Confidence 3466778899999999999974
No 10
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=9.44 E-value=60 Score=20.66 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=7.5
Q ss_pred CCCHHHHHH
Q 026980 16 QSDIDEIEN 24 (230)
Q Consensus 16 ~~~~~~~~~ 24 (230)
|.||||++.
T Consensus 13 qqDIddlkr 21 (34)
T 1a93_B 13 QQDIDDLKR 21 (34)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 789999874
Done!