Query 026980
Match_columns 230
No_of_seqs 122 out of 351
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 04:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsfa2 d.106.1.2 (A:161-240) 24.3 20 0.0014 25.1 2.3 19 106-124 2-20 (80)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 10.2 41 0.003 19.5 0.8 17 172-188 13-29 (32)
3 d1cola_ f.1.1.1 (A:) Colicin A 9.1 76 0.0056 25.2 2.3 17 143-160 122-138 (197)
4 d1itza3 c.48.1.1 (A:540-675) T 8.6 72 0.0053 22.6 1.8 32 93-126 104-135 (136)
5 d2g7sa2 a.121.1.1 (A:77-192) P 8.6 90 0.0066 20.6 2.3 62 99-163 32-95 (116)
6 d1ppjd2 f.23.11.1 (D:196-241) 8.0 83 0.0061 19.3 1.7 13 217-229 14-26 (46)
7 d2f76x1 a.61.1.3 (X:1-94) Maso 7.6 1E+02 0.0073 21.4 2.2 24 100-123 46-69 (94)
8 d1p9ga_ g.3.1.1 (A:) Antifunga 6.9 40 0.0029 20.3 -0.3 10 205-214 15-24 (41)
9 d1r9ja3 c.48.1.1 (A:527-669) T 6.8 62 0.0045 23.8 0.7 38 93-132 94-131 (143)
10 d2nr5a1 a.25.6.1 (A:1-64) Hypo 6.5 91 0.0066 20.2 1.3 15 13-27 34-48 (64)
No 1
>d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=24.30 E-value=20 Score=25.13 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=17.0
Q ss_pred CcchHHHHHhhHHHHHHhc
Q 026980 106 TEPVWDTVKRDLSRIVSNL 124 (230)
Q Consensus 106 DEPLlETLgRD~~~I~~Kl 124 (230)
-|+||++|-+|+..+|+|=
T Consensus 2 P~~vL~~LladIt~~W~~r 20 (80)
T d2nsfa2 2 PEVILRTLAAEITQKWTSQ 20 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhhc
Confidence 4689999999999999984
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.23 E-value=41 Score=19.47 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=11.9
Q ss_pred EeeehhHHHHHHHHHHH
Q 026980 172 FAVAFALLAAGAVILTL 188 (230)
Q Consensus 172 Fg~If~i~~lGaivltL 188 (230)
|+.||+-+-+|++++.+
T Consensus 13 fglifvgwglgalllki 29 (32)
T d2e74f1 13 FGLIFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHhhh
Confidence 66777777777776644
No 3
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=9.10 E-value=76 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.605 Sum_probs=12.0
Q ss_pred ccchhhHHHHHHHHHHHH
Q 026980 143 DWDLWGPFFFIVFLGLTL 160 (230)
Q Consensus 143 DwDLWGPLlFcLlLal~L 160 (230)
+++=||||+.=+= ++.+
T Consensus 122 eTGnW~Pl~l~~E-s~~~ 138 (197)
T d1cola_ 122 ETGNWGPLMLEVE-SWVL 138 (197)
T ss_dssp HHCCCHHHHHHHH-HHHH
T ss_pred cCCCchHHHHHHH-HHHH
Confidence 5677999988765 4444
No 4
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}
Probab=8.58 E-value=72 Score=22.57 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhhHHHHHHhccc
Q 026980 93 IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKL 126 (230)
Q Consensus 93 ~~~~~f~~~~dTLDEPLlETLgRD~~~I~~Kl~~ 126 (230)
.+.++||.... -+-|+|.+|.|..+|.+|.+.
T Consensus 104 ~g~d~FG~Sg~--~~~L~~~fglt~~~Iv~~~ks 135 (136)
T d1itza3 104 IGIDKFGASAP--AGTIYKEYGITVESIIAAAKS 135 (136)
T ss_dssp ECCCSCCCSSC--HHHHHHHHTCSHHHHHHHHTT
T ss_pred ccccCccCCCC--HHHHHHHhCCCHHHHHHHHHc
Confidence 44577877653 346999999999999998764
No 5
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.57 E-value=90 Score=20.56 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCCCCCCCcchHHHHHhhHHHHHHhccceeccCCCCCCCCCcc--cccchhhHHHHHHHHHHHHhhc
Q 026980 99 GSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKAL--RDWDLWGPFFFIVFLGLTLSWS 163 (230)
Q Consensus 99 ~~~~dTLDEPLlETLgRD~~~I~~Kl~~VL~P~~~~~~~~~~L--rDwDLWGPLlFcLlLal~Lsls 163 (230)
..|.+++||++.+.+.+.++.....+..+|---. .++++- .|.+-..=++++++-|..++-.
T Consensus 32 a~E~~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~---~~g~~~~~~d~~~lA~~l~~~~~G~~~~ar 95 (116)
T d2g7sa2 32 ASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGI---AQGRLVLTGTARANAEIFMATVHGAMLSAR 95 (116)
T ss_dssp HTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCBCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999998886421 122222 3556678889999999888654
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.97 E-value=83 Score=19.34 Aligned_cols=13 Identities=31% Similarity=0.115 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhhc
Q 026980 217 LPICFLLDAASYW 229 (230)
Q Consensus 217 lvilall~~~~~~ 229 (230)
+++++++.+++||
T Consensus 14 ~~~l~~l~~l~yy 26 (46)
T d1ppjd2 14 LLMMGLLLPLVYA 26 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777888776
No 7
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=7.61 E-value=1e+02 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCCCCCCcchHHHHHhhHHHHHHh
Q 026980 100 SPPNTLTEPVWDTVKRDLSRIVSN 123 (230)
Q Consensus 100 ~~~dTLDEPLlETLgRD~~~I~~K 123 (230)
.+.+|||.-.||-+|+|++.-++.
T Consensus 46 p~~Gtl~~~~W~kvG~~l~~~~~~ 69 (94)
T d2f76x1 46 PQEGTIDIKRWRRVGDCFQDYYNT 69 (94)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHHHHHH
Confidence 467789999999999999876554
No 8
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]}
Probab=6.92 E-value=40 Score=20.32 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=7.2
Q ss_pred ceEEEehhhh
Q 026980 205 FSVSVVGMAL 214 (230)
Q Consensus 205 qsvSVLGYCL 214 (230)
-+.||.|||=
T Consensus 15 lccsiygycg 24 (41)
T d1p9ga_ 15 LCCSIYGYCG 24 (41)
T ss_dssp CEEETTSCEE
T ss_pred eeEEEeeeec
Confidence 3678888883
No 9
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}
Probab=6.79 E-value=62 Score=23.81 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhhHHHHHHhccceeccCC
Q 026980 93 IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNP 132 (230)
Q Consensus 93 ~~~~~f~~~~dTLDEPLlETLgRD~~~I~~Kl~~VL~P~~ 132 (230)
.+.++||.... -+-|++.+|.|.++|.+|.+.+|.-++
T Consensus 94 iGid~FG~Sg~--~~~L~~~fGlt~e~Iv~~~~~ll~k~~ 131 (143)
T d1r9ja3 94 VGMSGFGASAP--AGVLYKKFGITVEEVVRTGRELAKRFP 131 (143)
T ss_dssp ESCSSCCCSSC--HHHHHHHTTCSHHHHHHHHHHHHHHSC
T ss_pred EecCCccccCC--HHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 34477877653 335999999999999999999998654
No 10
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.55 E-value=91 Score=20.18 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=8.0
Q ss_pred CCCCCCHHHHHHHHh
Q 026980 13 ASSQSDIDEIENLIN 27 (230)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (230)
+|..|||.|.|--.|
T Consensus 34 ssdssdmqeveiwtn 48 (64)
T d2nr5a1 34 SSDSSDMQEVEIWTN 48 (64)
T ss_dssp C----HHHHHHHHHH
T ss_pred CCcchhhHHHHHHHH
Confidence 445899999885544
Done!