BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026981
         (230 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JSU|C Chain C, P27(Kip1)CYCLIN ACDK2 COMPLEX
          Length = 84

 Score = 35.0 bits (79), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 11/58 (18%)

Query: 179 SACSLI--PTAHE-----MDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
           SAC  +  P  HE     ++K   D EE  QR    K+N+D  N KPL G ++WQ+V+
Sbjct: 5   SACRNLFGPVDHEELTRDLEKHCRDMEEASQR----KWNFDFQNHKPLEGKYEWQEVE 58


>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
          Length = 485

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)

Query: 142 GTRESTPCSLIRDPE-----IIRTPGSSNRPTSSMQNREAQISACSLIP------TAHEM 190
           GTR+   C+ +R  +     I+   G +  P +S ++ E+    C   P        H  
Sbjct: 280 GTRDFVACNHLRSYKYYLESILNPDGFAAYPCTSYKSFESD--KCFPCPDQGCPQMGHYA 337

Query: 191 DKFFADTEEEQQRQFI 206
           DKF   T EEQQ+ F+
Sbjct: 338 DKFAGRTSEEQQKFFL 353


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,712,691
Number of Sequences: 62578
Number of extensions: 144765
Number of successful extensions: 195
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 2
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)