Query 026981
Match_columns 230
No_of_seqs 98 out of 110
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jsu_C P27, KIP1, CIP2; comple 99.7 8.6E-18 2.9E-22 128.1 2.5 51 179-229 5-58 (84)
2 2eoc_A Poly [ADP-ribose] polym 23.9 68 0.0023 24.8 3.5 28 202-229 93-123 (124)
3 3no7_A PARB, putative plasmid 16.4 1.5E+02 0.005 22.3 3.8 32 190-222 40-76 (80)
4 1q1v_A DEK protein; winged-hel 16.2 2.3E+02 0.0078 20.1 4.7 33 182-214 9-52 (70)
5 1jmt_A Splicing factor U2AF 35 15.7 1.1E+02 0.0036 22.1 2.8 24 186-209 28-51 (104)
6 3l9k_W Dynein intermediate cha 10.8 2.8E+02 0.0095 18.0 3.4 26 186-211 11-36 (38)
7 2cqi_A Nucleolysin TIAR; RNA r 8.7 2.4E+02 0.0082 19.3 2.7 16 182-197 21-39 (103)
8 2k98_A MSI-594; LPS, trnoe, an 8.3 81 0.0028 19.0 0.1 9 1-9 2-10 (26)
9 3zxs_A Cryptochrome B, rscryb; 7.7 1.2E+02 0.0041 29.2 1.0 17 208-224 185-201 (522)
10 3o7v_X PIWI-like protein 1; PI 7.6 1.4E+02 0.0048 23.1 1.2 17 203-219 69-86 (124)
No 1
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=99.68 E-value=8.6e-18 Score=128.07 Aligned_cols=51 Identities=29% Similarity=0.581 Sum_probs=46.2
Q ss_pred ccCCCC---CChHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCccceeecC
Q 026981 179 SACSLI---PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229 (230)
Q Consensus 179 ~~~~~~---Pt~~E~eeFFa~aE~~~~~rF~~KyNfD~~~d~PL~GRyEW~~~~ 229 (230)
++++.+ |..+||++||++++++++++|++||||||++|+||+|||||++|.
T Consensus 5 ~a~R~LFG~vd~eEl~~~f~~~l~~~~e~~~~KWNFDF~~d~PL~GryeWe~V~ 58 (84)
T 1jsu_C 5 SACRNLFGPVDHEELTRDLEKHCRDMEEASQRKWNFDFQNHKPLEGKYEWQEVE 58 (84)
T ss_dssp TTCCCSSCCCCHHHHHHHHHHHHTTTTHHHHHHHTEETTTTEECSSSSCCEEEE
T ss_pred chhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCceEEEEcc
Confidence 344555 778999999999999999999999999999999999999999984
No 2
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.88 E-value=68 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=17.7
Q ss_pred HHHHhhh--hCCCCCCC-CCCCCccceeecC
Q 026981 202 QRQFIEK--YNYDPVND-KPLPGHFKWQKVD 229 (230)
Q Consensus 202 ~~rF~~K--yNfD~~~d-~PL~GRyEW~~~~ 229 (230)
.+.|.+| .+|.-..+ +|.||+|-|+.++
T Consensus 93 ~k~f~~Ktgn~w~~r~~f~~~pgky~~~e~d 123 (124)
T 2eoc_A 93 EKKFREKTKNNWAERDHFVSHPGKYTLIEVQ 123 (124)
T ss_dssp HHHHHHHHSSCSTTGGGCCCCSSSCEEECCC
T ss_pred HHHHHHHHcCCcccccCcccCCCceeEEEec
Confidence 4445554 23333333 7899999999876
No 3
>3no7_A PARB, putative plasmid related protein; ribbon-helix-helix, DNA binding protein; 1.40A {Leifsonia xyli subsp}
Probab=16.41 E-value=1.5e+02 Score=22.30 Aligned_cols=32 Identities=16% Similarity=0.507 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhC----CCCCCCCCC-CCc
Q 026981 190 MDKFFADTEEEQQRQFIEKYN----YDPVNDKPL-PGH 222 (230)
Q Consensus 190 ~eeFFa~aE~~~~~rF~~KyN----fD~~~d~PL-~GR 222 (230)
+-+|-.+|=...-++...||| |+. .+-+| +||
T Consensus 40 lS~Fi~aAv~~ev~rlE~kyN~G~pf~~-~~g~lp~Gr 76 (80)
T 3no7_A 40 FSGFIAAALDAEVQRLEQRYNEGRRFEN-AERGVTRGR 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCC-CC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCCCCCC
Confidence 557877776666778889999 777 77777 365
No 4
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=16.17 E-value=2.3e+02 Score=20.08 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHHHH----------HHHHHHHHhhhh-CCCCC
Q 026981 182 SLIPTAHEMDKFFADT----------EEEQQRQFIEKY-NYDPV 214 (230)
Q Consensus 182 ~~~Pt~~E~eeFFa~a----------E~~~~~rF~~Ky-NfD~~ 214 (230)
..+|+.+||.+--... .+++++...++| ++|..
T Consensus 9 ~~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs 52 (70)
T 1q1v_A 9 KKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT 52 (70)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS
T ss_pred cCCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh
Confidence 4589988887765553 788999999999 99975
No 5
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=15.66 E-value=1.1e+02 Score=22.15 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhh
Q 026981 186 TAHEMDKFFADTEEEQQRQFIEKY 209 (230)
Q Consensus 186 t~~E~eeFFa~aE~~~~~rF~~Ky 209 (230)
++++|.+.|...+.+.++.|..+|
T Consensus 28 ~~~~l~~~f~~~~edl~~~f~~~~ 51 (104)
T 1jmt_A 28 SDVEMQEHYDEFFEEVFTEMEEKY 51 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhhccC
Confidence 468899999999999999995566
No 6
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=10.80 E-value=2.8e+02 Score=17.97 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhCC
Q 026981 186 TAHEMDKFFADTEEEQQRQFIEKYNY 211 (230)
Q Consensus 186 t~~E~eeFFa~aE~~~~~rF~~KyNf 211 (230)
.+.+.-.||..+=+=++++..+.|++
T Consensus 11 ~S~~F~~F~~rsskviERAL~e~yDi 36 (38)
T 3l9k_W 11 LSENFQRFVVRAGRVIERALSENVDI 36 (38)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred cCHHHHHHHHHHHHHHHHHHcccccc
Confidence 45899999999999999999887654
No 7
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=8.72 E-value=2.4e+02 Score=19.26 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=11.6
Q ss_pred CCCC---ChHHHHHHHHHH
Q 026981 182 SLIP---TAHEMDKFFADT 197 (230)
Q Consensus 182 ~~~P---t~~E~eeFFa~a 197 (230)
..+| ++++|.+||...
T Consensus 21 ~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2cqi_A 21 GNLSRDVTEVLILQLFSQI 39 (103)
T ss_dssp ESCCTTCCHHHHHHHHHHH
T ss_pred eCCCccCCHHHHHHHHHhc
Confidence 4555 788999999653
No 8
>2k98_A MSI-594; LPS, trnoe, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=8.32 E-value=81 Score=19.00 Aligned_cols=9 Identities=56% Similarity=1.173 Sum_probs=7.8
Q ss_pred Cchhhhhcc
Q 026981 1 MGKYMRKAK 9 (230)
Q Consensus 1 MGKYMRK~K 9 (230)
+||+++|+|
T Consensus 2 igkflkkak 10 (26)
T 2k98_A 2 IGKFLKKAK 10 (26)
T ss_dssp HHHHHHHTT
T ss_pred hhHHHHHHH
Confidence 489999988
No 9
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=7.66 E-value=1.2e+02 Score=29.21 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=14.1
Q ss_pred hhCCCCCCCCCCCCccc
Q 026981 208 KYNYDPVNDKPLPGHFK 224 (230)
Q Consensus 208 KyNfD~~~d~PL~GRyE 224 (230)
|||||-.|-.|+|+...
T Consensus 185 ~WnfD~~NRk~~p~~~~ 201 (522)
T 3zxs_A 185 KWNFDTENRKPAAPDLL 201 (522)
T ss_dssp SSCCGGGSCCCCCCCTT
T ss_pred ccCccccccccCCCCCC
Confidence 89999999999876543
No 10
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=7.64 E-value=1.4e+02 Score=23.12 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.1
Q ss_pred HHHhhhhCCCCC-CCCCC
Q 026981 203 RQFIEKYNYDPV-NDKPL 219 (230)
Q Consensus 203 ~rF~~KyNfD~~-~d~PL 219 (230)
+=|.+|||+++. .++||
T Consensus 69 eYyk~kY~i~I~~~~QPL 86 (124)
T 3o7v_X 69 EYYRKQYNQEITDLKQPM 86 (124)
T ss_dssp HHHHHHHCCCCCCSSCCE
T ss_pred HHHHHHhCceecCCCcce
Confidence 345789999985 68888
Done!