Query 026983
Match_columns 230
No_of_seqs 121 out of 1265
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 6.4E-37 1.4E-41 269.4 22.8 169 27-201 164-332 (365)
2 PTZ00224 protein phosphatase 2 100.0 9.2E-35 2E-39 256.7 23.1 170 28-202 103-274 (381)
3 KOG0697 Protein phosphatase 1B 100.0 2.8E-35 6.1E-40 242.3 16.7 171 27-201 123-293 (379)
4 PF00481 PP2C: Protein phospha 100.0 1.4E-34 3E-39 244.3 11.4 157 26-191 96-254 (254)
5 COG0631 PTC1 Serine/threonine 100.0 4.6E-34 1E-38 242.0 14.4 166 11-202 90-255 (262)
6 KOG0698 Serine/threonine prote 100.0 1.3E-32 2.8E-37 240.3 21.8 167 27-205 138-310 (330)
7 KOG0699 Serine/threonine prote 100.0 3.4E-32 7.5E-37 231.2 15.0 180 23-202 324-506 (542)
8 smart00332 PP2Cc Serine/threon 100.0 5.8E-29 1.2E-33 208.8 20.8 170 12-196 85-255 (255)
9 cd00143 PP2Cc Serine/threonine 100.0 8.2E-29 1.8E-33 207.2 20.8 172 12-198 82-254 (254)
10 KOG0700 Protein phosphatase 2C 100.0 2.7E-29 5.8E-34 217.2 14.6 160 21-180 193-376 (390)
11 PRK14559 putative protein seri 100.0 8.2E-29 1.8E-33 230.3 18.0 156 25-202 480-638 (645)
12 KOG1323 Serine/threonine phosp 99.9 1.6E-22 3.5E-27 170.8 15.2 193 7-201 222-489 (493)
13 KOG1379 Serine/threonine prote 99.8 1.2E-19 2.6E-24 152.9 17.4 162 5-198 147-330 (330)
14 KOG0618 Serine/threonine phosp 99.8 4.8E-18 1E-22 159.7 11.7 178 7-203 589-776 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.5 3.3E-13 7.2E-18 108.9 15.4 124 5-179 66-192 (193)
16 PF07228 SpoIIE: Stage II spor 99.4 8.7E-12 1.9E-16 100.4 14.8 143 5-199 40-193 (193)
17 TIGR02865 spore_II_E stage II 99.4 1.1E-11 2.5E-16 119.0 17.0 141 5-198 616-763 (764)
18 PF13672 PP2C_2: Protein phosp 99.4 6.5E-13 1.4E-17 108.8 6.2 102 25-162 93-196 (212)
19 COG2208 RsbU Serine phosphatas 98.7 1.4E-06 2.9E-11 77.5 16.0 145 3-199 210-366 (367)
20 COG3700 AphA Acid phosphatase 69.7 16 0.00035 29.4 5.8 47 133-180 71-128 (237)
21 COG2168 DsrH Uncharacterized c 57.5 7.8 0.00017 27.6 1.8 31 128-159 20-50 (96)
22 PF09436 DUF2016: Domain of un 55.1 7.5 0.00016 26.3 1.3 18 132-150 26-43 (72)
23 PF01436 NHL: NHL repeat; Int 46.1 42 0.00092 17.7 3.2 20 37-56 9-28 (28)
24 COG5518 Bacteriophage capsid p 40.0 19 0.00042 32.1 1.9 137 37-198 189-329 (492)
25 PF05785 CNF1: Rho-activating 33.2 58 0.0013 28.0 3.6 27 25-52 128-154 (281)
26 PRK15322 invasion protein OrgB 31.1 1.8E+02 0.0039 23.8 6.0 52 128-180 142-194 (210)
27 TIGR02276 beta_rpt_yvtn 40-res 27.7 94 0.002 17.3 3.0 19 40-58 3-21 (42)
28 PF05402 PqqD: Coenzyme PQQ sy 26.2 1.8E+02 0.0039 18.5 4.5 29 149-177 14-42 (68)
29 PF04077 DsrH: DsrH like prote 24.6 22 0.00047 24.8 -0.3 28 130-158 16-43 (88)
30 COG3787 Uncharacterized protei 24.6 1.3E+02 0.0028 22.8 3.8 35 33-71 15-51 (145)
31 PF06972 DUF1296: Protein of u 23.8 1.6E+02 0.0035 19.0 3.6 26 148-176 19-44 (60)
32 PRK06369 nac nascent polypepti 22.6 3.3E+02 0.007 20.2 6.9 56 117-175 37-99 (115)
33 TIGR03735 PRTRC_A PRTRC system 20.7 56 0.0012 26.5 1.3 49 131-180 24-89 (192)
34 PF13037 DUF3898: Domain of un 20.5 1.8E+02 0.0039 20.4 3.6 58 3-60 6-64 (91)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=6.4e-37 Score=269.39 Aligned_cols=169 Identities=40% Similarity=0.715 Sum_probs=151.2
Q ss_pred CCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecccCCccceeeccCCccc
Q 026983 27 PTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEF 106 (230)
Q Consensus 27 ~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~~g~~~~tr~lG~~~~ 106 (230)
..||||++++++.++++|+||+||||+|+++++++++||+||++.++.|+.|+...|+.+...+++|.+++||+|||..+
T Consensus 164 ~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~ 243 (365)
T PLN03145 164 LASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHM 243 (365)
T ss_pred CCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCccccccccccccc
Confidence 35999999999999999999999999999999999999999999999999999999999988888999999999999877
Q ss_pred cccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 026983 107 KLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE 186 (230)
Q Consensus 107 k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~~~ 186 (230)
|.... ...+.++++|++..+++.++|.||||||||||++++++++.+++...+....+++++|+.|++.|+. ++
T Consensus 244 k~~k~--~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~----rg 317 (365)
T PLN03145 244 EGMKG--SDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALK----RK 317 (365)
T ss_pred ccccc--ccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CC
Confidence 63210 1112367899999999999999999999999999999999988877665567899999999999999 88
Q ss_pred CCCCeeEEEEEcCCC
Q 026983 187 GCDNMTMILVQFKNA 201 (230)
Q Consensus 187 ~~DN~Tvivi~~~~~ 201 (230)
+.||+|||||+|+..
T Consensus 318 s~DNITvIVV~l~~~ 332 (365)
T PLN03145 318 SGDNLAVVVVCFQSQ 332 (365)
T ss_pred CCCCEEEEEEEeecC
Confidence 999999999999873
No 2
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=9.2e-35 Score=256.68 Aligned_cols=170 Identities=35% Similarity=0.621 Sum_probs=152.1
Q ss_pred CCcceeEEEEEE-CCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecccCCccceeeccCCccc
Q 026983 28 TSGSTACVAIIR-DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEF 106 (230)
Q Consensus 28 ~~GtT~~~~~i~-~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~~g~~~~tr~lG~~~~ 106 (230)
.+|||++++++. +++++|+|+||||+|++++|++++||+||++.++.|+.|+...++.+...|.+|.+.+||+||+..+
T Consensus 103 ~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~ 182 (381)
T PTZ00224 103 EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSF 182 (381)
T ss_pred CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCccc
Confidence 468999988886 6799999999999999999999999999999999999999999999988899999999999999998
Q ss_pred cccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcC-cCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC
Q 026983 107 KLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWD-CLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGG 185 (230)
Q Consensus 107 k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d-~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~~ 185 (230)
|.+...+.-.+.|+++|++..+.+.++| ||||||||||+ .++++++.+++.+......+++.+|+.|++.|+. +
T Consensus 183 K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~----r 257 (381)
T PTZ00224 183 KVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIR----R 257 (381)
T ss_pred ccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----c
Confidence 8765433344567899999999999998 88899999999 7999999999987655557899999999999999 8
Q ss_pred CCCCCeeEEEEEcCCCC
Q 026983 186 EGCDNMTMILVQFKNAS 202 (230)
Q Consensus 186 ~~~DN~Tvivi~~~~~~ 202 (230)
|+.||+||||+++....
T Consensus 258 Gs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 258 GSKDNISCLIVQLKDGA 274 (381)
T ss_pred CCCCCEEEEEEEeeCCC
Confidence 99999999999998654
No 3
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-35 Score=242.26 Aligned_cols=171 Identities=42% Similarity=0.753 Sum_probs=165.2
Q ss_pred CCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecccCCccceeeccCCccc
Q 026983 27 PTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEF 106 (230)
Q Consensus 27 ~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~~g~~~~tr~lG~~~~ 106 (230)
.++|||++.+++.-.++|++||||||++++|+|..++-|+||.|..+.|++||..+||.+...|+||.++++|+|||+.|
T Consensus 123 drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydy 202 (379)
T KOG0697|consen 123 DRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDY 202 (379)
T ss_pred ccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCccc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 026983 107 KLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE 186 (230)
Q Consensus 107 k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~~~ 186 (230)
|.-...+++.+.|+++|++....-+..|.||||+.||+||.++++|+.++++.-+....++.++|+.+++.|+. .|
T Consensus 203 K~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLh----KG 278 (379)
T KOG0697|consen 203 KNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLH----KG 278 (379)
T ss_pred ccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHh----cc
Confidence 99999999999999999999999888888999999999999999999999999888889999999999999999 99
Q ss_pred CCCCeeEEEEEcCCC
Q 026983 187 GCDNMTMILVQFKNA 201 (230)
Q Consensus 187 ~~DN~Tvivi~~~~~ 201 (230)
++||+|+|++-|...
T Consensus 279 SRDNMsivlvcfp~A 293 (379)
T KOG0697|consen 279 SRDNMSIVLVCFPGA 293 (379)
T ss_pred CccCceEEEEecCCC
Confidence 999999999999653
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.4e-34 Score=244.33 Aligned_cols=157 Identities=48% Similarity=0.752 Sum_probs=135.2
Q ss_pred CCCCcceeEEEEEECCeEEEEEeccccEEEEeCCeee-ecCCCCCCCcHHHHHHHHHcCCEEE-ecccCCccceeeccCC
Q 026983 26 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQAL-NLSKDHKPDLEVEKDRILKAGGFIQ-VGRVNGSLNLARAIGD 103 (230)
Q Consensus 26 ~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~-~lT~dh~~~~~~~~~r~~~~~~~~~-~~~~~g~~~~tr~lG~ 103 (230)
...+|||++++++.++++|+||+||||+|+++++... +||+||++.++.|+.|+...|+.+. ..|.+|.+++||+|||
T Consensus 96 ~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd 175 (254)
T PF00481_consen 96 SSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGD 175 (254)
T ss_dssp HTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-
T ss_pred cccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhcccccccccc
Confidence 4579999999999999999999999999999999888 9999999999999999999999998 7899999999999999
Q ss_pred ccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC
Q 026983 104 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA 183 (230)
Q Consensus 104 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~ 183 (230)
..+|.+. .++|+++|++..+++.++|.|||||||||||+++++++.+++.........|+.+|+.|++.|++
T Consensus 176 ~~~k~~~-----~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~--- 247 (254)
T PF00481_consen 176 FDLKPPG-----KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIA--- 247 (254)
T ss_dssp GGGTTCT-----SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH---
T ss_pred ccccccc-----cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---
Confidence 9988533 56899999999999999999999999999999999999999999766555799999999999999
Q ss_pred CCCCCCCe
Q 026983 184 GGEGCDNM 191 (230)
Q Consensus 184 ~~~~~DN~ 191 (230)
+++.||+
T Consensus 248 -~gs~DNi 254 (254)
T PF00481_consen 248 -RGSKDNI 254 (254)
T ss_dssp -TTHHSHE
T ss_pred -cCCCCCC
Confidence 8999986
No 5
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-34 Score=241.99 Aligned_cols=166 Identities=31% Similarity=0.503 Sum_probs=148.9
Q ss_pred HHHHHHhcCCCCCCCCCCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecc
Q 026983 11 YLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 90 (230)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~ 90 (230)
.+...+...........+||||++++++.++++|+||+||||+|++++|.+++||+||++.+.+++.|++..++...+++
T Consensus 90 ~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T COG0631 90 KANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPR 169 (262)
T ss_pred HHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCcc
Confidence 34455555544444556899999999999999999999999999999999999999999999999999999888777777
Q ss_pred cCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHH
Q 026983 91 VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVI 170 (230)
Q Consensus 91 ~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~ 170 (230)
.+ .+||+||+.. ...|++....++++| |+||||||||+.++++++.+++.. ..+++++
T Consensus 170 ~~---~ltralG~~~--------------~~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~ 227 (262)
T COG0631 170 RN---ALTRALGDFD--------------LLEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILKN----SETPQEA 227 (262)
T ss_pred ch---hhhhhcCCCc--------------ccceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhc----CCCHHHH
Confidence 76 9999999998 589999999999997 888999999999999999999987 6799999
Q ss_pred HHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCC
Q 026983 171 CEKVFDRCLAPSAGGEGCDNMTMILVQFKNAS 202 (230)
Q Consensus 171 a~~l~~~a~~~~~~~~~~DN~Tvivi~~~~~~ 202 (230)
++.+++.|+. +++.||+|++++.+....
T Consensus 228 ~~~li~~a~~----~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 228 ADKLIELALE----GGGPDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHHHHHh----cCCCCceEEEEEEeeccc
Confidence 9999999999 999999999999998764
No 6
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-32 Score=240.28 Aligned_cols=167 Identities=47% Similarity=0.716 Sum_probs=151.7
Q ss_pred CCCcceeEEEEEE-CCeEEEEEeccccEEEEeCC-eeeecCCCCCCCcHHHHHHHHHcCCEEEe----cccCCccceeec
Q 026983 27 PTSGSTACVAIIR-DKQLVVANAGDSRCVLSRKG-QALNLSKDHKPDLEVEKDRILKAGGFIQV----GRVNGSLNLARA 100 (230)
Q Consensus 27 ~~~GtT~~~~~i~-~~~l~ianvGDSr~~l~~~~-~~~~lT~dh~~~~~~~~~r~~~~~~~~~~----~~~~g~~~~tr~ 100 (230)
..+|||++++++. ++++||||+||||+++++.| ..++||.||.|..+.|+.||...||.+.. .|++|.++++|+
T Consensus 138 ~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa 217 (330)
T KOG0698|consen 138 RSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRA 217 (330)
T ss_pred CCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeee
Confidence 4688888888887 45999999999999999765 79999999999999999999999999993 599999999999
Q ss_pred cCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 026983 101 IGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA 180 (230)
Q Consensus 101 lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~ 180 (230)
|||..+|. ++|+++|++....+...|.||||+||||||.++++|.+++++........+..++..+...+..
T Consensus 218 ~GD~~~k~--------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~ 289 (330)
T KOG0698|consen 218 FGDVELKS--------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALS 289 (330)
T ss_pred cCCHHhcC--------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 99999884 7789999999999999999999999999999999999999999765567899999999999998
Q ss_pred CCCCCCCCCCeeEEEEEcCCCCCCC
Q 026983 181 PSAGGEGCDNMTMILVQFKNASNNG 205 (230)
Q Consensus 181 ~~~~~~~~DN~Tvivi~~~~~~~~~ 205 (230)
+++.||+|||||.|..+....
T Consensus 290 ----~~s~DnitvvvV~l~~~~~~~ 310 (330)
T KOG0698|consen 290 ----RGSKDNITVVVVRLKSSPKSP 310 (330)
T ss_pred ----cCCCCCeEEEEEEecCccccc
Confidence 899999999999998876543
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-32 Score=231.15 Aligned_cols=180 Identities=56% Similarity=0.960 Sum_probs=169.6
Q ss_pred CCCCCCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEE-ecccCCccceeecc
Q 026983 23 DFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ-VGRVNGSLNLARAI 101 (230)
Q Consensus 23 ~~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~-~~~~~g~~~~tr~l 101 (230)
...+..+|||++++++.+++|+|||.||||+++.|+|+.+.++.||.|..+.|..||..+||.+. -.|+||+++++|+|
T Consensus 324 EePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~ 403 (542)
T KOG0699|consen 324 EEPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAF 403 (542)
T ss_pred cCCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhh
Confidence 34566799999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred CCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC
Q 026983 102 GDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP 181 (230)
Q Consensus 102 G~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~ 181 (230)
||..||..-.+|+...-+++.|+|...-|.+.|.|+|+++||||++++.++++++++..+..+..+.++|+.|++.|++.
T Consensus 404 GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp 483 (542)
T KOG0699|consen 404 GDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAP 483 (542)
T ss_pred hhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999997
Q ss_pred CC--CCCCCCCeeEEEEEcCCCC
Q 026983 182 SA--GGEGCDNMTMILVQFKNAS 202 (230)
Q Consensus 182 ~~--~~~~~DN~Tvivi~~~~~~ 202 (230)
.. .+.+.||+|||++.|.+..
T Consensus 484 ~T~GDGTGCDNMT~ii~~Fkrk~ 506 (542)
T KOG0699|consen 484 STDGDGTGCDNMTVIITTFKRKS 506 (542)
T ss_pred CCCCCCcCCCcceEEEEEeccch
Confidence 65 4557899999999998543
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=5.8e-29 Score=208.77 Aligned_cols=170 Identities=48% Similarity=0.714 Sum_probs=145.4
Q ss_pred HHHHHhcCCCCCCCCCCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEeccc
Q 026983 12 LINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRV 91 (230)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~ 91 (230)
+...+............+|||++++++..++++++|+||||+|+++++++.++|.||++.+..+..|+...++.+...+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~ 164 (255)
T smart00332 85 TDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRV 164 (255)
T ss_pred HHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeE
Confidence 33444333333323356999999999999999999999999999999999999999999999999999999988877777
Q ss_pred CCccceeeccCCccccccCCCCCCCCceeeeceEEEEEe-cCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHH
Q 026983 92 NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVI 170 (230)
Q Consensus 92 ~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l-~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~ 170 (230)
++.+.+||++|+..+| +.+..+|++..+++ .++| +|||||||||++++.+++.+++.+.... .++.++
T Consensus 165 ~~~~~lt~~~g~~~~~---------~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~ 233 (255)
T smart00332 165 NGVLALSRAIGDFFLK---------PYVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEA 233 (255)
T ss_pred CCeEecccccCCHhhc---------CCeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHH
Confidence 8888999999998865 67789999999996 8888 7779999999999999999999875322 268999
Q ss_pred HHHHHHHhhcCCCCCCCCCCeeEEEE
Q 026983 171 CEKVFDRCLAPSAGGEGCDNMTMILV 196 (230)
Q Consensus 171 a~~l~~~a~~~~~~~~~~DN~Tvivi 196 (230)
|+.|.+.|.. ++..||+|+||+
T Consensus 234 ~~~l~~~a~~----~~~~Dn~T~ivv 255 (255)
T smart00332 234 AKRLIDLALA----RGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHH----cCCCCCeEEEEC
Confidence 9999999998 788999999985
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=8.2e-29 Score=207.20 Aligned_cols=172 Identities=45% Similarity=0.723 Sum_probs=145.2
Q ss_pred HHHHHhcCCCCCCCCCCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEeccc
Q 026983 12 LINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRV 91 (230)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~ 91 (230)
+...+............+|||++++++.+++++++|+||||+|++++++++++|.||++.++.+..|+...++.......
T Consensus 82 ~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~ 161 (254)
T cd00143 82 ADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRV 161 (254)
T ss_pred HHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEE
Confidence 33444333332233457999999999999999999999999999999999999999999998899999999987666667
Q ss_pred CCccceeeccCCccccccCCCCCCCCceeeeceEEEEEe-cCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHH
Q 026983 92 NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVI 170 (230)
Q Consensus 92 ~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l-~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~ 170 (230)
++.+.+||+||+..+| +.+..+|++..+++ +++| +|||||||||+.++.++|.+++..... ..+++++
T Consensus 162 ~~~~~~t~~lG~~~~~---------~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~-~~~~~~~ 230 (254)
T cd00143 162 PGVLAVTRALGDFDLK---------PGVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELA-KEDLQEA 230 (254)
T ss_pred cCceeeccccCCcccc---------CCEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhc-ccCHHHH
Confidence 7778999999999755 44578999999999 8888 777999999999999999999987421 1279999
Q ss_pred HHHHHHHhhcCCCCCCCCCCeeEEEEEc
Q 026983 171 CEKVFDRCLAPSAGGEGCDNMTMILVQF 198 (230)
Q Consensus 171 a~~l~~~a~~~~~~~~~~DN~Tvivi~~ 198 (230)
|+.|++.|.. .+..||+|+|++++
T Consensus 231 a~~l~~~a~~----~~~~Dn~t~i~~~~ 254 (254)
T cd00143 231 AQELVDLALR----RGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHHHHHh----CCCCCCEEEEEEeC
Confidence 9999999999 77899999999875
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-29 Score=217.18 Aligned_cols=160 Identities=32% Similarity=0.457 Sum_probs=139.2
Q ss_pred CCCCCCCCCcceeEEEEEECCeEEEEEeccccEEEEe---CC---eeeecCCCCCCCcHHHHHHHHHcCC----EEEec-
Q 026983 21 HSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSR---KG---QALNLSKDHKPDLEVEKDRILKAGG----FIQVG- 89 (230)
Q Consensus 21 ~~~~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~---~~---~~~~lT~dh~~~~~~~~~r~~~~~~----~~~~~- 89 (230)
...+.-+.+|+||+++++.++.|||||+|||||+|.. ++ ..+|||.||+..++.|.+||..++. .+...
T Consensus 193 ~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~ 272 (390)
T KOG0700|consen 193 QENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKH 272 (390)
T ss_pred ccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeecc
Confidence 3445557899999999999999999999999999964 33 4689999999999999999999974 33344
Q ss_pred -ccCCccceeeccCCccccccCCC------------CCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHH
Q 026983 90 -RVNGSLNLARAIGDVEFKLNKSL------------PAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDF 156 (230)
Q Consensus 90 -~~~g~~~~tr~lG~~~~k~~~~~------------~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~ 156 (230)
|+.|.+.+||||||..+|++... ..+.|+++++|.+...+|.+.|+||||+|||+|++++++|++.+
T Consensus 273 ~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~l 352 (390)
T KOG0700|consen 273 WRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSL 352 (390)
T ss_pred ceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHH
Confidence 88999999999999999987733 35899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhc
Q 026983 157 VRDQLTNETKLSVICEKVFDRCLA 180 (230)
Q Consensus 157 ~~~~~~~~~~~~~~a~~l~~~a~~ 180 (230)
|.++++....-+.+|+.|+..|+.
T Consensus 353 V~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 353 VHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHh
Confidence 999776544556788888888887
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.96 E-value=8.2e-29 Score=230.31 Aligned_cols=156 Identities=27% Similarity=0.355 Sum_probs=121.9
Q ss_pred CCCCCcceeEEEEEECCeEEEEEeccccEEEE-eCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecccCCccceeeccCC
Q 026983 25 HGPTSGSTACVAIIRDKQLVVANAGDSRCVLS-RKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 103 (230)
Q Consensus 25 ~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~-~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~~g~~~~tr~lG~ 103 (230)
...+||||++++++.++++|++||||||+|++ ++|++++||+||++.+.+.+.++.... ...+++++.+||+||+
T Consensus 480 ~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~~~----a~~~p~~~~LTrALG~ 555 (645)
T PRK14559 480 GSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEPQI----AYARPDAYQLTQALGP 555 (645)
T ss_pred cCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCHHH----HhcCcccceeeeccCC
Confidence 34469999999999999999999999999998 578999999999988776655532111 1123466799999998
Q ss_pred ccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCc--CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC
Q 026983 104 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDC--LSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP 181 (230)
Q Consensus 104 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~--l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~ 181 (230)
...+ ..+|++..+.+.++| +||||||||||+ ++. .+.+.+...+....++.++++.|++.|+.
T Consensus 556 ~~~~------------~l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~-~~~~~l~~il~~~~~l~~aa~~Li~~Al~- 620 (645)
T PRK14559 556 RDNS------------AIQPDIQFLEIEEDT-LLLLCSDGLSDNDLLET-HWQTHLLPLLSSSANLDQGLNKLIDLANQ- 620 (645)
T ss_pred CCCC------------cccceEEEEEcCCCC-EEEEECCCCCCCcccch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-
Confidence 7533 468999999999988 677999999994 443 23333333333367899999999999998
Q ss_pred CCCCCCCCCeeEEEEEcCCCC
Q 026983 182 SAGGEGCDNMTMILVQFKNAS 202 (230)
Q Consensus 182 ~~~~~~~DN~Tvivi~~~~~~ 202 (230)
+++.||+|+||+++....
T Consensus 621 ---~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 621 ---YNGHDNITAILVRLKVRP 638 (645)
T ss_pred ---cCCCCcEEEEEEEeccCC
Confidence 889999999999997543
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=1.6e-22 Score=170.78 Aligned_cols=193 Identities=25% Similarity=0.413 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCCCC--CCCCCCcceeEEEEEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCC
Q 026983 7 GFLRYLINRLLIGPHSD--FHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 84 (230)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~ 84 (230)
+.++.++....+....+ .....+|||+++++..-+++|+||.||||+++++++++++++++.+|. .|++|++....
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~Laf 299 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQELAF 299 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHHhh
Confidence 34555554444333222 223469999999999999999999999999999999999999999985 47777766530
Q ss_pred ---------EEE----------------------------------------------ecccCCccceeeccCCcccccc
Q 026983 85 ---------FIQ----------------------------------------------VGRVNGSLNLARAIGDVEFKLN 109 (230)
Q Consensus 85 ---------~~~----------------------------------------------~~~~~g~~~~tr~lG~~~~k~~ 109 (230)
+-. ..|+-+.+.++|.|||..+|..
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 000 2333456899999999999999
Q ss_pred CCCCCCCCceeeeceEEEEEecC----CCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCC--CH---HHHHHHHHHHhhc
Q 026983 110 KSLPAEKQIVTANPDISTIELCD----DDEFLVIACDGIWDCLSSQELVDFVRDQLTNET--KL---SVICEKVFDRCLA 180 (230)
Q Consensus 110 ~~~~~~~~~v~~~p~i~~~~l~~----gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~--~~---~~~a~~l~~~a~~ 180 (230)
+..-.-.|.+++.|++...++.. .|+.+||+|||+||.++++++..++...+.... +| ..+|+.++..|..
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 98888899999999999988764 255899999999999999999999999877643 33 3577888888776
Q ss_pred C-----CC----CCCCCCCeeEEEEEcCCC
Q 026983 181 P-----SA----GGEGCDNMTMILVQFKNA 201 (230)
Q Consensus 181 ~-----~~----~~~~~DN~Tvivi~~~~~ 201 (230)
. |- .-++.|||||.||-+...
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 3 32 345789999999988654
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-19 Score=152.90 Aligned_cols=162 Identities=21% Similarity=0.337 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcceeEEEEEE--CCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHc
Q 026983 5 QHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKA 82 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~ 82 (230)
+...+.+++..+.+.... .-++||+++++++ +++||+||+|||.+.++|+|++++-|..+.......++-
T Consensus 147 P~~lL~~ay~~l~~~~~~----~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQL---- 218 (330)
T KOG1379|consen 147 PVNLLEKAYAELKSQKVP----IVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQL---- 218 (330)
T ss_pred hHHHHHHHHHHHhhcCCC----CCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceee----
Confidence 455666666666655433 2488999999998 889999999999999999999999999887533211110
Q ss_pred CCEEEecccCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhc
Q 026983 83 GGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLT 162 (230)
Q Consensus 83 ~~~~~~~~~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~ 162 (230)
...+.. . ..+++|.. ...+...+++.+|| +|||+||||||++.+++|..++.....
T Consensus 219 ------s~~p~~-~-~~~~~d~p---------------~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~ 274 (330)
T KOG1379|consen 219 ------SSPPEG-Y-SSYISDVP---------------DSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDA 274 (330)
T ss_pred ------ccCCcc-c-cccccCCc---------------cccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhc
Confidence 000000 0 22233332 56678899999999 788999999999999999999988766
Q ss_pred -CCCCHHHHHHHHHHHhhcC-------------------CCCCCCCCCeeEEEEEc
Q 026983 163 -NETKLSVICEKVFDRCLAP-------------------SAGGEGCDNMTMILVQF 198 (230)
Q Consensus 163 -~~~~~~~~a~~l~~~a~~~-------------------~~~~~~~DN~Tvivi~~ 198 (230)
...+++.+|++|.+.|... ...+|..|||||+|..+
T Consensus 275 ~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 275 RGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 6789999999999998871 22356799999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=4.8e-18 Score=159.69 Aligned_cols=178 Identities=26% Similarity=0.389 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcceeEEEEEECC--------eEEEEEeccccEEEEeCCeeeecCCCCCC-CcHHHHH
Q 026983 7 GFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDK--------QLVVANAGDSRCVLSRKGQALNLSKDHKP-DLEVEKD 77 (230)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~--------~l~ianvGDSr~~l~~~~~~~~lT~dh~~-~~~~~~~ 77 (230)
+++...+-.+.++... .+...|..++.+.+..+ ++.+||+|+|.++++++|+-.++|+-... ..++|.+
T Consensus 589 ~~mr~~fl~~~rklg~--~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~ 666 (1081)
T KOG0618|consen 589 EQMRNTFLRLNRKLGE--EGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYK 666 (1081)
T ss_pred HHHHHHHHHHhhhhhh--hhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHH
Confidence 3344444444444433 33456666777777644 68999999999999999999999888754 4889999
Q ss_pred HHHHcCCEEE-ecccCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHH
Q 026983 78 RILKAGGFIQ-VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDF 156 (230)
Q Consensus 78 r~~~~~~~~~-~~~~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~ 156 (230)
|+...+|++. .++++|....||++|.+. .+|+|.++|++..+.|.+.|+|||+++-++|++++.+++++.
T Consensus 667 RI~~~~g~i~ed~k~ngvt~~tR~iG~~~---------l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~ 737 (1081)
T KOG0618|consen 667 RIVDSKGFITEDNKLNGVTSSTRAIGPFS---------LFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDA 737 (1081)
T ss_pred HHHHhcCeecCCCeeeceeeeeeeccccc---------ccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHH
Confidence 9999999998 888999999999999987 458999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCC
Q 026983 157 VRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASN 203 (230)
Q Consensus 157 ~~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~DN~Tvivi~~~~~~~ 203 (230)
+++ ..+|-.+|++|++.|+. .|+.||++|+|+++.....
T Consensus 738 vRn----~~dpL~AAkKL~d~AqS----Ygc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 738 VRN----VEDPLLAAKKLCDLAQS----YGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred Hhc----CCchHHHHHHHHHHHHh----cccccCeeEEEEEeecchh
Confidence 986 68999999999999999 9999999999999975544
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.54 E-value=3.3e-13 Score=108.91 Aligned_cols=124 Identities=20% Similarity=0.258 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcceeEEEEE--ECCeEEEEEeccccEEEEe-CCeeeecCCCCCCCcHHHHHHHHH
Q 026983 5 QHGFLRYLINRLLIGPHSDFHGPTSGSTACVAII--RDKQLVVANAGDSRCVLSR-KGQALNLSKDHKPDLEVEKDRILK 81 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i--~~~~l~ianvGDSr~~l~~-~~~~~~lT~dh~~~~~~~~~r~~~ 81 (230)
..+.++.++..+... ....+|+|++++++ ..++++++|+||+|+|+++ ++..++.+.+.
T Consensus 66 ~~~~l~~~n~~l~~~-----~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------- 127 (193)
T smart00331 66 LSQILERLNRAIYEN-----GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------- 127 (193)
T ss_pred HHHHHHHHHHHHHhc-----CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC-------------
Confidence 345566666666554 12358999999998 4788999999999999998 66666665442
Q ss_pred cCCEEEecccCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHh
Q 026983 82 AGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL 161 (230)
Q Consensus 82 ~~~~~~~~~~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~ 161 (230)
+..+|... ...+++..+.+.+|| .|+|+|||+|+.++.+++.+++.+..
T Consensus 128 ----------------~~~lG~~~--------------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~ 176 (193)
T smart00331 128 ----------------GAPLGLEP--------------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL 176 (193)
T ss_pred ----------------CceeeeCC--------------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc
Confidence 23556443 345678889999999 56699999999999999999998743
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 026983 162 TNETKLSVICEKVFDRCL 179 (230)
Q Consensus 162 ~~~~~~~~~a~~l~~~a~ 179 (230)
..+++++++++.+.+.
T Consensus 177 --~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 177 --GSPPAEIAQRILEELL 192 (193)
T ss_pred --CCCHHHHHHHHHHHHh
Confidence 4578999998888654
No 16
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.41 E-value=8.7e-12 Score=100.37 Aligned_cols=143 Identities=23% Similarity=0.331 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcceeEEEEEE--CCeEEEEEeccccEEEEeC--CeeeecCCCCCCCcHHHHHHHH
Q 026983 5 QHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIR--DKQLVVANAGDSRCVLSRK--GQALNLSKDHKPDLEVEKDRIL 80 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSr~~l~~~--~~~~~lT~dh~~~~~~~~~r~~ 80 (230)
..+.++.+++.+....... ...+|++++.++ .+.++++|+|+++++++++ +....+.....
T Consensus 40 p~~~l~~ln~~l~~~~~~~----~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~----------- 104 (193)
T PF07228_consen 40 PEELLEALNRRLYRDLKGD----NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGP----------- 104 (193)
T ss_dssp HHHHHHHHHHHHHHHTTTT----STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSB-----------
T ss_pred HHHHHHHHHHHHHHHhhhc----cccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCcc-----------
Confidence 4667777777774444332 477888888887 6679999999999999998 34444432221
Q ss_pred HcCCEEEecccCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHH-------HH
Q 026983 81 KAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQ-------EL 153 (230)
Q Consensus 81 ~~~~~~~~~~~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~-------~i 153 (230)
.+|-.. ...+...++++.+|| .|+|+||||++....+ .+
T Consensus 105 -------------------~lG~~~--------------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~ 150 (193)
T PF07228_consen 105 -------------------PLGIFE--------------DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERL 150 (193)
T ss_dssp -------------------BCSSSC--------------TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHH
T ss_pred -------------------ceeeec--------------cccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHH
Confidence 245433 245567789999999 5669999999998433 44
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcC
Q 026983 154 VDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 199 (230)
Q Consensus 154 ~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~DN~Tvivi~~~ 199 (230)
.+.+.+. ...+++++++.+++.+.. .......||+||+++++.
T Consensus 151 ~~~l~~~--~~~~~~~~~~~l~~~~~~-~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 151 LELLDEN--RGLSPQEIIDALLEAIDR-FGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHCH--TTS-HHHHHHHHHHHHHH-HTTSSTSS-EEEEEEEE-
T ss_pred HHHHhhc--cCCCHHHHHHHHHHHHHH-hcCCCCCCceEEEEEEEC
Confidence 5555543 356799999999998886 112567899999999873
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.40 E-value=1.1e-11 Score=118.98 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcceeEEEEEE--CCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHc
Q 026983 5 QHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKA 82 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~ 82 (230)
++..++.++..+.... ...+.+|+.+++++ .+++.++|+|+++.|+.+++.+.+++..+.|
T Consensus 616 ~~~ai~~lN~~L~~~~-----~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------ 678 (764)
T TIGR02865 616 REVAIKTVNSILSLRS-----TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------ 678 (764)
T ss_pred HHHHHHHHHHHHHhCC-----CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------
Confidence 4455666666654331 12478999999997 6889999999999999999988888643322
Q ss_pred CCEEEecccCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHH-----HHHHH
Q 026983 83 GGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQE-----LVDFV 157 (230)
Q Consensus 83 ~~~~~~~~~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~-----i~~~~ 157 (230)
+|-.. ..+++..+.++.+|| +|||+|||+|+..+..+ +.+++
T Consensus 679 ------------------lGil~--------------~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l 725 (764)
T TIGR02865 679 ------------------IGILD--------------EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKL 725 (764)
T ss_pred ------------------eEecc--------------CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHH
Confidence 22211 245667788999999 66799999999876432 55555
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEc
Q 026983 158 RDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 198 (230)
Q Consensus 158 ~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~DN~Tvivi~~ 198 (230)
.+. ...+|+++++.|++.++.... +...||+|++++++
T Consensus 726 ~~~--~~~~p~ela~~Il~~a~~~~~-~~~~DD~Tvlvirv 763 (764)
T TIGR02865 726 KET--NTNDPEEIAEYLLEKAKELRS-GKIKDDMTVIVAKV 763 (764)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHhcC-CCCCCCeEEEEEEe
Confidence 442 245899999999999886432 34589999999986
No 18
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.38 E-value=6.5e-13 Score=108.77 Aligned_cols=102 Identities=27% Similarity=0.483 Sum_probs=60.3
Q ss_pred CCCCCcceeEEEEEECCeEEEEEeccccEEE-EeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecccCCccceeeccCC
Q 026983 25 HGPTSGSTACVAIIRDKQLVVANAGDSRCVL-SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 103 (230)
Q Consensus 25 ~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l-~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~~g~~~~tr~lG~ 103 (230)
....++||++++++.++.++++|+||||+|+ .++|.+..++.+|+... . ..++++..
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~----~------------------~~~~~~~~ 150 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEY----P------------------NQTRSLTG 150 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHH----H------------------HCTTSCCH
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchh----h------------------hhhhccCc
Confidence 4456899999999999999999999999965 57999999999997211 0 11333333
Q ss_pred ccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcCcCCHHH-HHHHHHHHhc
Q 026983 104 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQE-LVDFVRDQLT 162 (230)
Q Consensus 104 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d~l~~~~-i~~~~~~~~~ 162 (230)
.. ......+..+++.++| .|+|||||||+.+...+ +..++.+.+.
T Consensus 151 ~~-------------~~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 151 DD-------------PEPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp HC-------------CCTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred cc-------------cccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhccc
Confidence 22 0234467778889999 45599999999998654 6666665433
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.66 E-value=1.4e-06 Score=77.54 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCCCCCCcceeEEEEEE--CCeEEEEEeccccEEEEeCCe---eeecCCCCCCCcHHHHH
Q 026983 3 YKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQ---ALNLSKDHKPDLEVEKD 77 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSr~~l~~~~~---~~~lT~dh~~~~~~~~~ 77 (230)
+++..+++.++..+....... +-+|+...+++ .+.+.++|+|--..++++.+. ...++
T Consensus 210 ~~p~~~l~~~n~~~~~~~~~~-----~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~------------ 272 (367)
T COG2208 210 LDPADVLETLNRVLKQNLEED-----MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT------------ 272 (367)
T ss_pred CCHHHHHHHHHHHHHhcccCC-----cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc------------
Confidence 346677777777777765543 78899888887 778999999999999998654 34442
Q ss_pred HHHHcCCEEEecccCCccceeeccCCccccccCCCCCCCCceeeeceEEEEEecCCCeEEEEEcCCCcC-------cCCH
Q 026983 78 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWD-------CLSS 150 (230)
Q Consensus 78 r~~~~~~~~~~~~~~g~~~~tr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d-------~l~~ 150 (230)
.....+|-.. ...+.+....+.+|| .||+.|||+++ .+..
T Consensus 273 ------------------~~g~piG~~~--------------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~ 319 (367)
T COG2208 273 ------------------ALGLPIGLLP--------------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGL 319 (367)
T ss_pred ------------------CCCceeeecC--------------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecH
Confidence 3344566554 466777888999999 77799999999 4666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcC
Q 026983 151 QELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 199 (230)
Q Consensus 151 ~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~DN~Tvivi~~~ 199 (230)
+...+++.+ ....+++++++.+.+............||+|++++++.
T Consensus 320 ~~~~~~~~~--~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 320 ERLLKILGR--LLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 777777765 23568999999998888775545566788999999975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=69.67 E-value=16 Score=29.38 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCeEEEEEcCCCcC-----------cCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 026983 133 DDEFLVIACDGIWD-----------CLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA 180 (230)
Q Consensus 133 gd~~lIl~SDGv~d-----------~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~ 180 (230)
.| -+++.|.|+|. +|.+..+.+.+..-.+...=|+++|+.|++.-.+
T Consensus 71 DD-TvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~ 128 (237)
T COG3700 71 DD-TVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred CC-eeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHh
Confidence 35 45589998884 5667788888877777677899999999998666
No 21
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=57.54 E-value=7.8 Score=27.63 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=24.5
Q ss_pred EEecCCCeEEEEEcCCCcCcCCHHHHHHHHHH
Q 026983 128 IELCDDDEFLVIACDGIWDCLSSQELVDFVRD 159 (230)
Q Consensus 128 ~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~ 159 (230)
.-+.++|.++ |+.|||+-.+...+...-++.
T Consensus 20 ~~l~~~D~vl-L~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 20 RLLTEGDAVL-LLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred HHhcccCeEE-EEcccchhhhcCcHHHHHHhc
Confidence 3467889655 999999999988777777665
No 22
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=55.06 E-value=7.5 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=14.2
Q ss_pred CCCeEEEEEcCCCcCcCCH
Q 026983 132 DDDEFLVIACDGIWDCLSS 150 (230)
Q Consensus 132 ~gd~~lIl~SDGv~d~l~~ 150 (230)
.|.++| +++||+|=.+..
T Consensus 26 ~G~Rll-va~nGv~lEv~r 43 (72)
T PF09436_consen 26 PGHRLL-VASNGVFLEVRR 43 (72)
T ss_pred CCcEEE-EecCcEEEEEec
Confidence 778766 999999976553
No 23
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=46.07 E-value=42 Score=17.75 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.1
Q ss_pred EEECCeEEEEEeccccEEEE
Q 026983 37 IIRDKQLVVANAGDSRCVLS 56 (230)
Q Consensus 37 ~i~~~~l~ianvGDSr~~l~ 56 (230)
+-.++.+||+-.|..|+..+
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 33788999999999998754
No 24
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=40.01 E-value=19 Score=32.11 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=72.2
Q ss_pred EEECCeEEEEEeccccEEEEeCCeeeecCCCCCCCcHHHHHHHHHcCCEEEecccCCccceeeccCCccccccCCCCCCC
Q 026983 37 IIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEK 116 (230)
Q Consensus 37 ~i~~~~l~ianvGDSr~~l~~~~~~~~lT~dh~~~~~~~~~r~~~~~~~~~~~~~~g~~~~tr~lG~~~~k~~~~~~~~~ 116 (230)
+|+.+++|.-..||.|.|=+..|..+-.+.-..++++..-..| . .|.+.+-|.||...--+.
T Consensus 189 mID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kI-g----------s~~YG~Prwig~ivslyg------- 250 (492)
T COG5518 189 MIDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKI-G----------SGAYGLPRWIGAIVSLYG------- 250 (492)
T ss_pred eeccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhh-c----------ccccCchHHHHHHHHHHh-------
Confidence 4678899999999999999999977666655555544332221 1 122233334432210000
Q ss_pred CceeeeceEEE-EEecCC--CeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC-CCCCCCCee
Q 026983 117 QIVTANPDIST-IELCDD--DEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMT 192 (230)
Q Consensus 117 ~~v~~~p~i~~-~~l~~g--d~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~~~~-~~~~~DN~T 192 (230)
--+.+... .-+..| -.++|..+||..+.-+-.++.+.+.. -+.+.++-+-++-.+..... ...+..|+|
T Consensus 251 ---arkAeeln~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~----~~g~eNa~~flm~e~~G~~~kn~hgd~~i~ 323 (492)
T COG5518 251 ---ARKAEELNRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKS----AKGPENARNFLMYEPNGKKIKNAHGDGNIS 323 (492)
T ss_pred ---hhhHHHHHHHHHhcCccCceEEEecccccchHHHHHHHHHHhh----cCCchhhhhheeeccCCeeccccCCCCCcC
Confidence 00000000 001111 23788999999887777777777766 45555554444433332111 112235566
Q ss_pred EEEEEc
Q 026983 193 MILVQF 198 (230)
Q Consensus 193 vivi~~ 198 (230)
=+-|.+
T Consensus 324 ~vkV~I 329 (492)
T COG5518 324 PVKVQI 329 (492)
T ss_pred ceeEEe
Confidence 555554
No 25
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=33.15 E-value=58 Score=27.96 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=19.3
Q ss_pred CCCCCcceeEEEEEECCeEEEEEecccc
Q 026983 25 HGPTSGSTACVAIIRDKQLVVANAGDSR 52 (230)
Q Consensus 25 ~~~~~GtT~~~~~i~~~~l~ianvGDSr 52 (230)
.+..+|||.+.+ +.++.+|..|+|-+-
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~~ 154 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKSN 154 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEESS
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCCC
Confidence 455789998766 589999999999873
No 26
>PRK15322 invasion protein OrgB; Provisional
Probab=31.13 E-value=1.8e+02 Score=23.80 Aligned_cols=52 Identities=13% Similarity=0.382 Sum_probs=38.1
Q ss_pred EEecCCCeEEEEEcCCCcCcCCHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhhc
Q 026983 128 IELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK-LSVICEKVFDRCLA 180 (230)
Q Consensus 128 ~~l~~gd~~lIl~SDGv~d~l~~~~i~~~~~~~~~~~~~-~~~~a~~l~~~a~~ 180 (230)
+..-++.+|| +|+|-..-.+++++.++.....+...-+ ....|+.|-+.++.
T Consensus 142 i~yhd~~rFV-~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 142 LKYHQEQRFI-MSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred EEEcCCCceE-EEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 4455666777 8998888889999999988776655444 67777777766554
No 27
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=27.69 E-value=94 Score=17.33 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.2
Q ss_pred CCeEEEEEeccccEEEEeC
Q 026983 40 DKQLVVANAGDSRCVLSRK 58 (230)
Q Consensus 40 ~~~l~ianvGDSr~~l~~~ 58 (230)
++.+|++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5679999998888888753
No 28
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=26.24 E-value=1.8e+02 Score=18.47 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 026983 149 SSQELVDFVRDQLTNETKLSVICEKVFDR 177 (230)
Q Consensus 149 ~~~~i~~~~~~~~~~~~~~~~~a~~l~~~ 177 (230)
.-++....+++..+...++.++++.+.+.
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 44555566666655556677777766654
No 29
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=24.60 E-value=22 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.532 Sum_probs=17.8
Q ss_pred ecCCCeEEEEEcCCCcCcCCHHHHHHHHH
Q 026983 130 LCDDDEFLVIACDGIWDCLSSQELVDFVR 158 (230)
Q Consensus 130 l~~gd~~lIl~SDGv~d~l~~~~i~~~~~ 158 (230)
+.++|. |+|.-|||+-.+........+.
T Consensus 16 ~~~~D~-ilLiqDgV~~a~~~~~~~~~l~ 43 (88)
T PF04077_consen 16 LSEGDA-ILLIQDGVYAALKGSPYFKLLQ 43 (88)
T ss_dssp --TT-E-EEE-GGGGGGGBTTSTTHHHHH
T ss_pred cCCCCE-EEeeHHHHHHHhcCCHHHHHHh
Confidence 367785 5599999999888766655554
No 30
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.59 E-value=1.3e+02 Score=22.83 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.8
Q ss_pred eEEEEEECCeEEEEEeccccEEEEe--CCeeeecCCCCCCC
Q 026983 33 ACVAIIRDKQLVVANAGDSRCVLSR--KGQALNLSKDHKPD 71 (230)
Q Consensus 33 ~~~~~i~~~~l~ianvGDSr~~l~~--~~~~~~lT~dh~~~ 71 (230)
+++|...++.+|++++ .|++. +..++.+|.||+-.
T Consensus 15 ~Tw~~~~e~~~w~asa----fYvFDek~~ali~~T~e~TrH 51 (145)
T COG3787 15 LTWCVQQEGELWCASA----FYVFDEKNVALIILTEEKTRH 51 (145)
T ss_pred eeeeeecCCceeeeee----EEEEcccceEEEEEeccchhH
Confidence 5778889999999875 78886 45688899999843
No 31
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=23.84 E-value=1.6e+02 Score=19.04 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 026983 148 LSSQELVDFVRDQLTNETKLSVICEKVFD 176 (230)
Q Consensus 148 l~~~~i~~~~~~~~~~~~~~~~~a~~l~~ 176 (230)
-+++||...+.+. +.+|.+++++|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 5789999999887 6799999999987
No 32
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=22.58 E-value=3.3e+02 Score=20.17 Aligned_cols=56 Identities=7% Similarity=0.143 Sum_probs=39.1
Q ss_pred CceeeeceEEEEEecCCCeEEEEEcCCCcC-------cCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 026983 117 QIVTANPDISTIELCDDDEFLVIACDGIWD-------CLSSQELVDFVRDQLTNETKLSVICEKVF 175 (230)
Q Consensus 117 ~~v~~~p~i~~~~l~~gd~~lIl~SDGv~d-------~l~~~~i~~~~~~~~~~~~~~~~~a~~l~ 175 (230)
-.+...|+++.++...++.|.|++..-.-+ .++.++|.-++.+. +-+..++-+.|.
T Consensus 37 ~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~---gvs~~~A~~AL~ 99 (115)
T PRK06369 37 EIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQT---GVSEEEARKALE 99 (115)
T ss_pred EEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHH---CcCHHHHHHHHH
Confidence 346889999999988888899898877754 36777777666553 444445444443
No 33
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=20.72 E-value=56 Score=26.47 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=30.7
Q ss_pred cCCCeEEEEEcCCCcCcCCHHHHHHHH--HHHhc---CC------------CCHHHHHHHHHHHhhc
Q 026983 131 CDDDEFLVIACDGIWDCLSSQELVDFV--RDQLT---NE------------TKLSVICEKVFDRCLA 180 (230)
Q Consensus 131 ~~gd~~lIl~SDGv~d~l~~~~i~~~~--~~~~~---~~------------~~~~~~a~~l~~~a~~ 180 (230)
..|.+|| +++||+|=.+...-+..+. ..... ++ .=+..+.+++++.|.+
T Consensus 24 ~~g~r~~-~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~ 89 (192)
T TIGR03735 24 KPGHRFI-VAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARA 89 (192)
T ss_pred cCCcEEE-EecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHh
Confidence 4578777 9999999887654443332 21110 11 2356777888888887
No 34
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=20.49 E-value=1.8e+02 Score=20.38 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCCCCCCcceeEEEEEE-CCeEEEEEeccccEEEEeCCe
Q 026983 3 YKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIR-DKQLVVANAGDSRCVLSRKGQ 60 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~-~~~l~ianvGDSr~~l~~~~~ 60 (230)
+...+.+++...-..+.+.....-.-..+++=..+-+ +.++++|-+||-=+.++....
T Consensus 6 w~~eqV~EAaa~IvE~~Pe~elk~KLd~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~ 64 (91)
T PF13037_consen 6 WEPEQVMEAAAQIVEQQPEIELKFKLDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDS 64 (91)
T ss_pred cCHHHHHHHHHHHHhhCCCceEEEecCceehhHHHHhhccceeEEEECCEEEEEEEcce
Confidence 3456677777777777776666555566666555555 778999999997777776553
Done!