Query 026985
Match_columns 230
No_of_seqs 173 out of 1353
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 5E-46 1.7E-50 324.0 21.5 210 5-229 11-225 (306)
2 2w96_A G1/S-specific cyclin-D1 100.0 3.8E-44 1.3E-48 307.3 19.6 205 11-229 4-211 (271)
3 2f2c_A Cyclin homolog, V-cycli 100.0 1.4E-43 4.9E-48 301.1 19.9 183 41-229 21-206 (254)
4 2cch_B Cyclin A2, cyclin-A; co 100.0 2.9E-43 9.8E-48 300.2 21.4 188 36-229 3-191 (260)
5 1g3n_C V-cyclin; cyclin-depend 100.0 8.4E-43 2.9E-47 296.8 20.2 185 40-230 19-206 (257)
6 1f5q_B Gamma herpesvirus cycli 100.0 4.6E-43 1.6E-47 297.5 14.7 179 40-228 21-202 (252)
7 1w98_B Cyclin E, G1/S-specific 100.0 2.3E-41 8E-46 291.7 22.8 186 38-229 16-212 (283)
8 2b9r_A Human cyclin B1; cell c 100.0 4.5E-42 1.5E-46 294.2 17.2 185 37-229 4-188 (269)
9 2i53_A Cyclin K; cell cycle, t 100.0 9.3E-33 3.2E-37 234.6 12.7 158 68-229 35-205 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 2.9E-31 1E-35 225.4 16.6 156 69-229 26-197 (257)
11 1zp2_A RNA polymerase II holoe 100.0 1E-29 3.5E-34 213.3 17.7 150 74-229 28-184 (235)
12 3rgf_B Cyclin-C; protein kinas 100.0 8.3E-30 2.8E-34 219.7 15.7 156 70-229 39-207 (285)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 2.1E-30 7.2E-35 229.8 8.8 156 69-229 33-204 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 3.7E-28 1.3E-32 212.8 14.5 155 71-229 54-220 (323)
15 1c9b_A General transcription f 99.9 1.3E-22 4.4E-27 166.8 17.8 150 72-229 3-152 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 2.5E-18 8.5E-23 140.4 16.5 150 72-229 7-158 (200)
17 3k7a_M Transcription initiatio 99.5 2.7E-15 9.1E-20 132.2 5.4 148 74-229 126-285 (345)
18 4bbr_M Transcription initiatio 99.1 1.5E-10 5.3E-15 101.7 9.3 147 75-229 127-285 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.7 1.2E-07 4.2E-12 80.7 12.7 109 77-189 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 96.6 0.018 6.2E-07 45.8 10.3 89 79-174 110-198 (200)
21 1c9b_A General transcription f 94.6 0.22 7.5E-06 39.7 9.2 86 78-170 103-188 (207)
22 2i53_A Cyclin K; cell cycle, t 88.5 2.2 7.6E-05 34.8 8.7 88 79-170 153-250 (258)
23 2ivx_A Cyclin-T2; transcriptio 88.4 4.3 0.00015 33.0 10.5 87 79-169 148-238 (257)
24 1zp2_A RNA polymerase II holoe 87.5 0.85 2.9E-05 37.0 5.5 82 80-169 137-218 (235)
25 3h4c_A Transcription factor TF 86.4 6.1 0.00021 31.7 9.5 88 76-170 14-103 (260)
26 3rgf_B Cyclin-C; protein kinas 84.6 1.9 6.4E-05 36.1 6.3 83 79-170 159-241 (285)
27 2f2c_A Cyclin homolog, V-cycli 81.4 7.8 0.00027 31.5 8.8 85 79-169 154-246 (254)
28 1g3n_C V-cyclin; cyclin-depend 80.7 8.9 0.0003 31.2 8.9 87 78-169 152-246 (257)
29 2cch_B Cyclin A2, cyclin-A; co 79.5 7.3 0.00025 31.8 8.0 85 78-169 140-226 (260)
30 2pk2_A Cyclin-T1, protein TAT; 78.8 4 0.00014 35.4 6.4 87 80-170 156-246 (358)
31 2b9r_A Human cyclin B1; cell c 72.2 5.5 0.00019 32.8 5.3 55 79-136 140-194 (269)
32 2w96_A G1/S-specific cyclin-D1 72.0 16 0.00053 30.0 8.1 90 79-173 159-259 (271)
33 3g33_B CCND3 protein; Ser/Thr 70.4 21 0.00072 29.9 8.7 89 80-173 174-269 (306)
34 3k7a_M Transcription initiatio 69.9 0.92 3.2E-05 39.2 0.0 55 79-136 237-291 (345)
35 4bbr_M Transcription initiatio 62.8 1.6 5.3E-05 37.8 0.0 57 77-136 235-291 (345)
36 1jkw_A Cyclin H; cell cycle, c 61.0 32 0.0011 29.1 8.0 75 92-170 185-260 (323)
37 3m03_A ORC6, origin recognitio 50.2 60 0.0021 22.4 9.1 79 81-168 6-90 (95)
38 2qdj_A Retinoblastoma-associat 49.3 90 0.0031 26.2 8.8 63 81-147 6-72 (304)
39 2p1m_A SKP1-like protein 1A; F 47.0 29 0.00098 26.1 4.9 38 120-159 112-149 (160)
40 3v7d_A Suppressor of kinetocho 40.9 42 0.0014 25.5 5.0 39 119-159 119-157 (169)
41 1fs1_B SKP1, cyclin A/CDK2-ass 35.9 63 0.0022 23.6 5.2 82 42-145 25-133 (141)
42 1w98_B Cyclin E, G1/S-specific 35.7 1.8E+02 0.006 23.7 8.5 57 97-167 182-238 (283)
43 2wh0_Q Pkcev3, protein kinase 28.0 47 0.0016 17.3 2.2 18 155-172 12-29 (31)
44 1f5q_B Gamma herpesvirus cycli 27.8 2.1E+02 0.0072 22.9 7.5 64 97-169 173-240 (252)
45 2ast_A S-phase kinase-associat 26.9 1.6E+02 0.0054 21.7 6.2 81 66-159 46-150 (159)
46 1uhw_A Pleckstrin; three-helix 23.0 58 0.002 23.1 2.8 30 74-104 40-69 (109)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5e-46 Score=324.00 Aligned_cols=210 Identities=22% Similarity=0.318 Sum_probs=172.4
Q ss_pred CCCCccccccccc--cccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHH
Q 026985 5 CSGSFPDLLCGED--SGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWIL 82 (230)
Q Consensus 5 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~ 82 (230)
.||.+ +|+|+|+ ...++.++ |... |++|++++|+++|.++.|+++|++..| +++++.+|.++++||.
T Consensus 11 ~~~~~-~l~~~e~~~~~~~a~~d-p~l~--------~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl~ 79 (306)
T 3g33_B 11 PGGSM-ELLCCEGTRHAPRAGPD-PRLL--------GDQRVLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWML 79 (306)
T ss_dssp ------------------------------------CHHHHHHHHHHHGGGGSCSSCCTTTST-TTCCHHHHHHHHHHHH
T ss_pred CCCCc-ceeeecccccccccCCC-Cccc--------chHHHHHHHHHHHHHhCCCcHHHhhcC-ccCCHHHHHHHHHHHH
Confidence 34555 6999993 33666666 5444 789999999999999999999998544 5699999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHH
Q 026985 83 KVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRME 162 (230)
Q Consensus 83 ~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E 162 (230)
+++..++++++|+++||+|||||+++..+.+. ++|++|+|||+||+|+||..||.+++++. .+++.|++++|++||
T Consensus 80 ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~---~lqLv~~tcL~lAsK~eE~~p~~~~~l~~-~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 80 EVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA---QLQLLGAVCMLLASKLRETTPLTIEKLCI-YTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGG---GHHHHHHHHHHHHHHHHCSSCCCTTHHHH-HTTTSSCHHHHHHHH
T ss_pred HHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHhccCCCCCHHHHHH-HhccCccHHHHHHHH
Confidence 99999999999999999999999999999887 89999999999999999999999999986 678899999999999
Q ss_pred HHHHHHcCCcccCCChHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 163 LLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTF---MGFLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 163 ~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~---~~~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
+.||++|+|+++.|||++|+++|++.++..++. ....+.++.++.+.+..+.+|.||.|||||+|++
T Consensus 156 ~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA 225 (306)
T 3g33_B 156 VLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAA 225 (306)
T ss_dssp HHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999988766543 3355677888999999999999999999999987
No 2
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.8e-44 Score=307.25 Aligned_cols=205 Identities=22% Similarity=0.315 Sum_probs=173.2
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCC
Q 026985 11 DLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNF 90 (230)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l 90 (230)
+|+|+|+..+.-+..+|... ++|++++|+++|.++.|+++|+...| +++++.+|.++++||.+++..+++
T Consensus 4 ~l~c~e~~~~~~~~~dp~~~---------~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lv~wl~~v~~~~~l 73 (271)
T 2w96_A 4 QLLCCEVETIRRAYPDANLL---------NDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQKC 73 (271)
T ss_dssp --CCCSSSCC--------------------CHHHHHHHHHHHHTCCCTTHHHHTC-SSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ceeeCCCCccccCCCCCccc---------HHHHHHHHHHHHHHhCCCchHHHhcC-CcCCHHHHHHHHHHHHHHHHHHCC
Confidence 59999976643333324332 45899999999999999999987544 579999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcC
Q 026985 91 LPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLD 170 (230)
Q Consensus 91 ~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~ 170 (230)
+++|+++|++|+|||+++.++++. ++|++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|+
T Consensus 74 ~~~tl~lAv~~lDRfls~~~v~~~---~lqlv~~acL~iAsK~EE~~p~~~~~~~~-~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 74 EEEVFPLAMNYLDRFLSLEPVKKS---RLQLLGATCMFVASKMKETIPLTAEKLCI-YTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTSCCCTT---THHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTTSSCHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhCCcCCcCHH---HHHHHHHHHHHHHHHHhhcCCCCHHHHHH-HhcCCCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999888 79999999999999999999999999986 67889999999999999999999
Q ss_pred CcccCCChHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 171 WRLRSVTPFSFIYFFACKLDPTGTFMG---FLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 171 f~l~~ptp~~fl~~~l~~l~~~~~~~~---~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
|++++|||++|+.+|++.++..++... ..+.++.++++.+..+.+|.||.|||||+|++
T Consensus 150 ~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA 211 (271)
T 2w96_A 150 WNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211 (271)
T ss_dssp TCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 999999999999999999876654322 34556667777777788999999999999987
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.4e-43 Score=301.07 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhH
Q 026985 41 EESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQ 120 (230)
Q Consensus 41 ~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lq 120 (230)
+|+++ |+++|.++.|+++|++.. |+++++++|.+++|||++++.+++++++|+++||+|+|||++++.+++. ++|
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~lq 95 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKK---TLQ 95 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTT---THH
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHH---Hcc
Confidence 88999 999999999999999743 5679999999999999999999999999999999999999999999888 799
Q ss_pred HHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChH---H
Q 026985 121 LLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM---G 197 (230)
Q Consensus 121 lv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~---~ 197 (230)
++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|+|+++.|||++|+++|++.++...+.. .
T Consensus 96 Lv~~acl~iA~K~eE~~~p~~~d~~~-~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~ 174 (254)
T 2f2c_A 96 KIGAACVLIGSKIRTVKPMTVSKLTY-LSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLY 174 (254)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHST-TC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHH-HhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHH
Confidence 99999999999999999999999985 6888999999999999999999999999999999999999988766542 3
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 198 FLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 198 ~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
..+.++.++.+.+..+.+|+||.|||||+|++
T Consensus 175 ~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la 206 (254)
T 2f2c_A 175 EAASTTICKALIQPNIALLSPGLICAGGLLTT 206 (254)
T ss_dssp HHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhccCHHHHHHHHHHHH
Confidence 46778888888899999999999999999986
No 4
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.9e-43 Score=300.16 Aligned_cols=188 Identities=25% Similarity=0.303 Sum_probs=177.2
Q ss_pred CCcchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCC
Q 026985 36 SSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNN 115 (230)
Q Consensus 36 ~~~~~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~ 115 (230)
.++|.+|++.+|+++|.++.|+++|++. |+++++.+|..++|||.+++..++++++|+++|++|+|||+++.++++.
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~- 79 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG- 79 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH-
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH-
Confidence 4689999999999999999999999997 7889999999999999999999999999999999999999999999887
Q ss_pred CchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCCh
Q 026985 116 GWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTF 195 (230)
Q Consensus 116 ~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~ 195 (230)
++|++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|+|++++|||++|+.+|+..++..+..
T Consensus 80 --~lqlv~~acl~iA~K~ee~~~~~~~d~~~-i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 156 (260)
T 2cch_B 80 --KLQLVGTAAMLLASKFEEIYPPEVAEFVY-ITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK 156 (260)
T ss_dssp --HHHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHH
T ss_pred --HHhHHHHHHHHHHHHhcccCCCCHHHHHH-HHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHH
Confidence 89999999999999999999999999986 678899999999999999999999999999999999999998866545
Q ss_pred HHHHHHHHHHHHHHhcc-CCCCchhHHHHhHhHhh
Q 026985 196 MGFLISRATKIILSNIQ-GSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 196 ~~~~~~~~~el~l~~~~-~~~f~pS~iAaaal~l~ 229 (230)
...++.++.++++.+.. +.+|.||.|||||+|++
T Consensus 157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA 191 (260)
T 2cch_B 157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191 (260)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHH
Confidence 67889999999988888 99999999999999986
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8.4e-43 Score=296.79 Aligned_cols=185 Identities=23% Similarity=0.279 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchh
Q 026985 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (230)
Q Consensus 40 ~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~l 119 (230)
++|++ +|+++|.++.|+++|+... |+++++++|.++++||.+++.+++++++|+++||+|+|||+++..+++. ++
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKE---HF 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHH---HH
T ss_pred HHHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHH---HH
Confidence 37899 9999999999999998643 5579999999999999999999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChH---
Q 026985 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM--- 196 (230)
Q Consensus 120 qlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~--- 196 (230)
|++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|+|+++.|||++|+++|++.++...+..
T Consensus 94 qLv~~acl~iA~K~eE~~~p~~~d~~~-~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~ 172 (257)
T 1g3n_C 94 QKTGSACLLVASKLRSLTPISTSSLCY-AAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFW 172 (257)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHH
Confidence 999999999999999999999999986 6788999999999999999999999999999999999999987765542
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHhHhHhhC
Q 026985 197 GFLISRATKIILSNIQGSTIYIIIIQAPTLYLLV 230 (230)
Q Consensus 197 ~~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~~ 230 (230)
...+.++.++.+.+..+.+|+||.|||||+|++.
T Consensus 173 ~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~ 206 (257)
T 1g3n_C 173 HHEVNTLITKALVDPLTGSLPASIISAAGCALLV 206 (257)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHH
Confidence 4567788888899999999999999999999873
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.6e-43 Score=297.47 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchh
Q 026985 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (230)
Q Consensus 40 ~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~l 119 (230)
.++++++|+++|.++.| ... |+++++.+|.++||||++|+.+|+++++|+++||+|+|||+++..+++. ++
T Consensus 21 ~d~i~~~l~~~E~~~~p----~~~--q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~---~l 91 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG----VNV--DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRE---NY 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSS----SSH--HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGG---GH
T ss_pred HHHHHHHHHHHHHHhCc----Ccc--CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHH---HH
Confidence 45899999999999988 111 4468999999999999999999999999999999999999999999888 89
Q ss_pred HHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCCh---H
Q 026985 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTF---M 196 (230)
Q Consensus 120 qlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~---~ 196 (230)
||+|+|||+||+|+||..||.+++++. .+++.|++++|++||+.||++|+|+++.|||++|+++|++.++..++. .
T Consensus 92 qLvg~tcl~iAsK~eE~~p~~~~~l~~-~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~ 170 (252)
T 1f5q_B 92 QSTAAVALHIAGKVRAYMPIKATQLAY-LCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNI 170 (252)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHH-HHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHH-HhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHH
Confidence 999999999999999999999999986 688999999999999999999999999999999999999988765432 3
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHhHhHh
Q 026985 197 GFLISRATKIILSNIQGSTIYIIIIQAPTLYL 228 (230)
Q Consensus 197 ~~~~~~~~el~l~~~~~~~f~pS~iAaaal~l 228 (230)
...++++.++.+.++.+.+|+||+|||||+.+
T Consensus 171 ~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~ 202 (252)
T 1f5q_B 171 YNLCRPKIFCALCDGRSAMKRPVLITLACMHL 202 (252)
T ss_dssp HHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhccCHHHHHHHHHHH
Confidence 44677888999999999999999999999654
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.3e-41 Score=291.67 Aligned_cols=186 Identities=22% Similarity=0.366 Sum_probs=168.6
Q ss_pred cchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-cccCCCCC
Q 026985 38 ASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYS-RRLPDNNG 116 (230)
Q Consensus 38 ~~~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~-~~i~~~~~ 116 (230)
+|.+|++++|+++|.++.|+++|++. |+++++++|.++++||.+++..++++++|+++|++|+|||+++ ..+++.
T Consensus 16 ~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~-- 91 (283)
T 1w98_B 16 ANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT-- 91 (283)
T ss_dssp SCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGG--
T ss_pred cCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHH--
Confidence 57889999999999999999999987 7889999999999999999999999999999999999999998 577776
Q ss_pred chhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCC--
Q 026985 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGT-- 194 (230)
Q Consensus 117 ~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~-- 194 (230)
++|++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|+|++++|||++|+++|++.++..+.
T Consensus 92 -~lqlv~~acL~iA~K~eE~~~p~l~~~~~-i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~ 169 (283)
T 1w98_B 92 -LLQLIGISSLFIAAKLEEIYPPKLHQFAY-VTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHE 169 (283)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHH-TTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCC
T ss_pred -HHHHHHHHHHHHHHHhcccCCCcHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhh
Confidence 79999999999999999999999999986 67889999999999999999999999999999999999987754321
Q ss_pred -----h-HH--HHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 195 -----F-MG--FLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 195 -----~-~~--~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
+ .. ..+.++.++.+.+..+.+|.||.|||||+|++
T Consensus 170 ~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la 212 (283)
T 1w98_B 170 VLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHF 212 (283)
T ss_dssp SSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHH
Confidence 1 11 23456778888899999999999999999986
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=4.5e-42 Score=294.19 Aligned_cols=185 Identities=21% Similarity=0.282 Sum_probs=171.4
Q ss_pred CcchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCC
Q 026985 37 SASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNG 116 (230)
Q Consensus 37 ~~~~~e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~ 116 (230)
++|.+|++++|+++|.++.|+++|+++ + ++++.+|..+++||.+++..++++++|+++|++|+|||++...+++.
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~-- 78 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK-- 78 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG--
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH--
Confidence 578899999999999999999999986 5 79999999999999999999999999999999999999999999887
Q ss_pred chhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChH
Q 026985 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM 196 (230)
Q Consensus 117 ~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~ 196 (230)
++|++|+|||+||+|+||..||.+++++. .+++.|++++|.+||+.||++|+|+++.|||++|+.+|...++... ..
T Consensus 79 -~lqlv~~acL~iA~K~eE~~~p~~~d~~~-~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-~~ 155 (269)
T 2b9r_A 79 -MLQLVGVTAMFIASKYEEMYPPEIGDFAF-VTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV-EQ 155 (269)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH-HH
T ss_pred -HhhHHHHHHHHHHHhcccccCccHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH-HH
Confidence 89999999999999999999999999986 6788999999999999999999999999999999999998776543 45
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 197 GFLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 197 ~~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
..++.++.+.++.+..+.+|+||.|||||+|++
T Consensus 156 ~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA 188 (269)
T 2b9r_A 156 HTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLA 188 (269)
T ss_dssp HHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHH
Confidence 678899999999999999999999999999986
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.3e-33 Score=234.59 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHh
Q 026985 68 SLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVE 147 (230)
Q Consensus 68 ~i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~ 147 (230)
+.+..+|..+++||.+++..++++++|+++|++|||||++++.+.+. ++|++|+|||+||+|+||. |+++++++..
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF---PRYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhc---CHHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 46789999999999999999999999999999999999999999887 7999999999999999995 8889998842
Q ss_pred ----ccCCcc------CHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHHHhccCC
Q 026985 148 ----GAKYIF------ETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGT---FMGFLISRATKIILSNIQGS 214 (230)
Q Consensus 148 ----~~~~~~------t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~---~~~~~~~~~~el~l~~~~~~ 214 (230)
.+++.| ++++|.+||+.||++|+|++++|||+.|+.+|++.++...+ .....+.++.+.++.+..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l 190 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh
Confidence 233344 48999999999999999999999999999999999887653 34566777778888888899
Q ss_pred CCchhHHHHhHhHhh
Q 026985 215 TIYIIIIQAPTLYLL 229 (230)
Q Consensus 215 ~f~pS~iAaaal~l~ 229 (230)
+|.||.|||||+|++
T Consensus 191 ~~~Ps~IAaAai~lA 205 (258)
T 2i53_A 191 QWEPEIIAVAVMYLA 205 (258)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHH
Confidence 999999999999987
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.97 E-value=2.9e-31 Score=225.40 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhc
Q 026985 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (230)
Q Consensus 69 i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~ 148 (230)
....+|..+++||.+++..++++++|+++|++|||||++++.+.+. ++|++|+|||+||+|+||. |+.+++++...
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKF---NKNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhh---CHHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 4468999999999999999999999999999999999999999887 7999999999999999999 88999987321
Q ss_pred -------------cCCccC--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH-hcc
Q 026985 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILS-NIQ 212 (230)
Q Consensus 149 -------------~~~~~t--~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~-~~~ 212 (230)
.++.|+ +++|++||+.||++|+|++++|||+.|+..|++.++..++ ....+.++.+.++. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~A~~~~~~sl~~~~~ 180 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD-LAQTSYFMATNSLHLTTF 180 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHCCG
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcH-HHHHHHHHHHhhhhcccH
Confidence 234555 8999999999999999999999999999999999876543 45566666666663 444
Q ss_pred CCCCchhHHHHhHhHhh
Q 026985 213 GSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 213 ~~~f~pS~iAaaal~l~ 229 (230)
+.+|.||.|||||+|++
T Consensus 181 ~l~~~Ps~IAaAai~lA 197 (257)
T 2ivx_A 181 CLQYKPTVIACVCIHLA 197 (257)
T ss_dssp GGTSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 78999999999999987
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-29 Score=213.32 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCC-CCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccC--
Q 026985 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPD-NNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAK-- 150 (230)
Q Consensus 74 R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~-~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~-- 150 (230)
|..+++||.+++..++++++|+++|++|||||+++..+.+ . ++|++|+|||+||+|+||. |+++++++.. ++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~---~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~-~~~~ 102 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGF---SLEALVATCIYLSCKVEEC-PVHIRTICNE-ANDL 102 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCC---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc---CHHHHHHHHHHHHhccccC-cccHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999988 7 7999999999999999995 7789999853 32
Q ss_pred ----CccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhccCCCCchhHHHHhHh
Q 026985 151 ----YIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGSTIYIIIIQAPTL 226 (230)
Q Consensus 151 ----~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~~~~~~~f~pS~iAaaal 226 (230)
..+++++|.+||+.||++|+|++.++||+.|+..|++.++...+ ....+.++.+.++.+..+..|.||.|||||+
T Consensus 103 ~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~-~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 103 WSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQK-QLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHH-HHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 25899999999999999999999999999999999998755443 4567777777778888889999999999999
Q ss_pred Hhh
Q 026985 227 YLL 229 (230)
Q Consensus 227 ~l~ 229 (230)
|++
T Consensus 182 ~lA 184 (235)
T 1zp2_A 182 LIS 184 (235)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.97 E-value=8.3e-30 Score=219.71 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhc-
Q 026985 70 DASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG- 148 (230)
Q Consensus 70 ~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~- 148 (230)
..++|..+++||.+++..++++++|+++|++|||||++.+.+.+. ++|++|+|||+||+|+||..+|.+++++...
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~~~~~~~di~~~~~ 115 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSI---DPVLMAPTCVFLASKVEEFGVVSNTRLIAAAT 115 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhc---CHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 357899999999999999999999999999999999999999887 7999999999999999999888888876321
Q ss_pred ------------cCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhccCCCC
Q 026985 149 ------------AKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGSTI 216 (230)
Q Consensus 149 ------------~~~~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~~~~~~~f 216 (230)
.++.+++++|++||+.||++|+|+++++||+.|+..|++.++...+ ....+.++.+.++.+..+..|
T Consensus 116 ~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~-~~~~A~~~l~~sl~t~~~l~~ 194 (285)
T 3rgf_B 116 SVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLY 194 (285)
T ss_dssp HHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHH-HHHHHHHHHHHHTTSSHHHHS
T ss_pred HHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHccChhhcc
Confidence 1335789999999999999999999999999999999999886543 456677777777777778899
Q ss_pred chhHHHHhHhHhh
Q 026985 217 YIIIIQAPTLYLL 229 (230)
Q Consensus 217 ~pS~iAaaal~l~ 229 (230)
.||.|||||+|++
T Consensus 195 ~Ps~IAaAaiylA 207 (285)
T 3rgf_B 195 PPFMIALACLHVA 207 (285)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.96 E-value=2.1e-30 Score=229.83 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhc
Q 026985 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (230)
Q Consensus 69 i~~~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~ 148 (230)
....+|..+++||.+++..++++++|+++|++|||||++++.+.+. ++|++|+||||||+|+||. |+.+++++...
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~---~~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRF---PGNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---cHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999887 7999999999999999999 88899987321
Q ss_pred -------------cCCccC--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH-hcc
Q 026985 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILS-NIQ 212 (230)
Q Consensus 149 -------------~~~~~t--~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~-~~~ 212 (230)
.++.|+ +++|++||+.||++|+|++.+|||+.||..|++.++...+ ....+.++.+.++. +..
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~-l~~~A~~ll~~sl~~t~l 187 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTF 187 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHH-HHHHHHHHHHHHTTTSCG
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhcCcc
Confidence 233454 8999999999999999999999999999999998876543 44556666666553 333
Q ss_pred CCCCchhHHHHhHhHhh
Q 026985 213 GSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 213 ~~~f~pS~iAaaal~l~ 229 (230)
+..|.||.|||||+|++
T Consensus 188 ~l~y~Ps~IAaAAI~lA 204 (358)
T 2pk2_A 188 SLQYTPPVVACVCIHLA 204 (358)
T ss_dssp GGTSCHHHHTTTTTTTH
T ss_pred hhccCHHHHHHHHHHHH
Confidence 78999999999999987
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.95 E-value=3.7e-28 Score=212.77 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhc
Q 026985 71 ASAREESVAWILKVQAYYN--FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (230)
Q Consensus 71 ~~~R~~lv~Wm~~v~~~~~--l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~ 148 (230)
..+|...++||.+++..++ ++++|+++|++|||||++.+.+.+. ++|++|+||||||+|+||. ++++++++...
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY---HPRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhc---CHHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4568899999999999999 9999999999999999999999887 7999999999999999998 57899998543
Q ss_pred cCC----ccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcC----CCC--ChHHHHHHHHHHHHHHhccCCCCch
Q 026985 149 AKY----IFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLD----PTG--TFMGFLISRATKIILSNIQGSTIYI 218 (230)
Q Consensus 149 ~~~----~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~----~~~--~~~~~~~~~~~el~l~~~~~~~f~p 218 (230)
.+. .+++++|++||+.||++|+|++.++||+.|+..|+..+. +.+ +.....+..+.+.++.+..+..|.|
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~P 209 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTP 209 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCH
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCH
Confidence 222 467899999999999999999999999999999987652 122 2234455556666666666788999
Q ss_pred hHHHHhHhHhh
Q 026985 219 IIIQAPTLYLL 229 (230)
Q Consensus 219 S~iAaaal~l~ 229 (230)
|.|||||+|++
T Consensus 210 s~IAaAai~lA 220 (323)
T 1jkw_A 210 SQIALTAILSS 220 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.90 E-value=1.3e-22 Score=166.80 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCC
Q 026985 72 SAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKY 151 (230)
Q Consensus 72 ~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~ 151 (230)
+......++|.+++..++++++|...|+.|++||+..+.+... ..++++++|+++|+|+||. |++++++.. ..+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~---~~~~v~aaclylAcK~ee~-p~~l~di~~-~~~- 76 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGR---ANDAIASACLYIACRQEGV-PRTFKEICA-VSR- 76 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHH-TSS-
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHhcCC-CCCHHHHHH-HHC-
Confidence 3466788999999999999999999999999999999988777 6999999999999999997 789999985 344
Q ss_pred ccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 152 IFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 152 ~~t~~~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
+++.+|.++|+.|++.|+|++..++|+.|+..|...++..++ ....+.++.+.++......++.|+.|||||+|++
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-VQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 899999999999999999999999999999999999887653 5677888888888777788999999999999987
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.79 E-value=2.5e-18 Score=140.37 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCC
Q 026985 72 SAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKY 151 (230)
Q Consensus 72 ~~R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~ 151 (230)
+......++|.+++..+++++.+...|..+++|++....+... ..+.++++|+++|+|.++ .|..++++.. ..+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr---~~~~vaaAclylAcr~~~-~p~~l~di~~-~~~- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR---SIESVMAACVYAACRLLK-VPRTLDEIAD-IAR- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC---CHHHHHHHHHHHHHHHHT-CCCCHHHHHH-HTT-
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC---CHHHHHHHHHHHHHHHcC-CCCCHHHHHH-HHC-
Confidence 4467899999999999999999999999999999999877766 699999999999999988 5789999885 343
Q ss_pred ccCHHHHHHHHHHHHHHcCCcccC--CChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhccCCCCchhHHHHhHhHhh
Q 026985 152 IFETKTIRRMELLVLSVLDWRLRS--VTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGSTIYIIIIQAPTLYLL 229 (230)
Q Consensus 152 ~~t~~~i~~~E~~IL~~L~f~l~~--ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~~~~~~~f~pS~iAaaal~l~ 229 (230)
+++.+|.++++.|++.|+|++.. ++|+.|+..|...++..++ ....+.++.+.........++.|+.|||||+|++
T Consensus 81 -v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A 158 (200)
T 1ais_B 81 -VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-VRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA 158 (200)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-HHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 78999999999999999999999 9999999999999987654 4567777777777777788899999999999986
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.7e-15 Score=132.24 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCcc
Q 026985 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIF 153 (230)
Q Consensus 74 R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~ 153 (230)
.......|..++..++++..+.-.|..+|.|++....+... ..+.++++|+++|+|.++. |..+.++.. ..+ +
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr---~~~~vaaAclyiAcR~e~~-prtl~ei~~-~~~--v 198 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQS-LIH--V 198 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCC---CSHHHHTTTTTTTSBTTBS-SCCHHHHHH-SSS--C
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC---cHHHHHHHHHHHHHHHcCC-CccHHHHHH-HHC--C
Confidence 34677889999999999999999999999999999888766 5999999999999998776 789999885 344 7
Q ss_pred CHHHHHHHHHHHHHHcC------------CcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhccCCCCchhHH
Q 026985 154 ETKTIRRMELLVLSVLD------------WRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGSTIYIIII 221 (230)
Q Consensus 154 t~~~i~~~E~~IL~~L~------------f~l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~~~~~~~f~pS~i 221 (230)
++.+|.++++.|++.|+ +++.+++|..|+.+|...++...+ ....+.++.+.+.......++.|+.|
T Consensus 199 ~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v~~~A~~i~~~~~~~~l~~Gr~P~~I 277 (345)
T 3k7a_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp CSHHHHHHHHHHHHHHTCC-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHhchhcCCCHHHH
Confidence 89999999999999999 999999999999999999987654 34566666666666666778999999
Q ss_pred HHhHhHhh
Q 026985 222 QAPTLYLL 229 (230)
Q Consensus 222 Aaaal~l~ 229 (230)
||||+|++
T Consensus 278 AaAaIylA 285 (345)
T 3k7a_M 278 AVVSIYLN 285 (345)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99999997
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.13 E-value=1.5e-10 Score=101.73 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccC
Q 026985 75 EESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (230)
Q Consensus 75 ~~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t 154 (230)
......|.+++..++++..+.-.|..++.++.....+... ....++++|+++|+|.++. |..+.++... .+ .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGr---s~e~vaAAclYiACR~~~~-prtl~eI~~~-~~--v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQSL-IH--VK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTC---CHHHHHHHHHHHHHHHTCC-BCCHHHHHHH-HT--CC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCC---CHHHHHHHHHHHHHHhcCC-CccHHHHHHH-hC--CC
Confidence 4566678899999999999999999999999998777665 5899999999999998764 6788888753 33 67
Q ss_pred HHHHHHHHHHHHHHcCCc------------ccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhccCCCCchhHHH
Q 026985 155 TKTIRRMELLVLSVLDWR------------LRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGSTIYIIIIQ 222 (230)
Q Consensus 155 ~~~i~~~E~~IL~~L~f~------------l~~ptp~~fl~~~l~~l~~~~~~~~~~~~~~~el~l~~~~~~~f~pS~iA 222 (230)
+.+|-+..+.|.+.|+.. +....|.+|+.+|...|+...+. ...+..+.+.+...-....-.|+.||
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v-~~~A~~i~~~~~~~~i~~GR~P~~IA 278 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQV-TTSAEYTAKKCKEIKEIAGKSPITIA 278 (345)
T ss_dssp TTHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHhcccccCCChHHHH
Confidence 899999999999999974 67789999999999998876543 34444444444443334567899999
Q ss_pred HhHhHhh
Q 026985 223 APTLYLL 229 (230)
Q Consensus 223 aaal~l~ 229 (230)
|||+|++
T Consensus 279 AAaIylA 285 (345)
T 4bbr_M 279 VVSIYLN 285 (345)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9999997
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.74 E-value=1.2e-07 Score=80.69 Aligned_cols=109 Identities=8% Similarity=0.019 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHH
Q 026985 77 SVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETK 156 (230)
Q Consensus 77 lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~ 156 (230)
+-+|+.++....+++.+++-.|..|+||+....+.-.-+....+.+-++|+.+|+|+-+......+.+... + .++.+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-g--Gisl~ 153 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-G--GVRCH 153 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-H--TSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-c--CcCHH
Confidence 55688899999999999999999999999986432111122588999999999999988777777887753 3 38999
Q ss_pred HHHHHHHHHHHHcCCcccCCChHHHHHHHHHhc
Q 026985 157 TIRRMELLVLSVLDWRLRSVTPFSFIYFFACKL 189 (230)
Q Consensus 157 ~i~~~E~~IL~~L~f~l~~ptp~~fl~~~l~~l 189 (230)
|+..||+..|..|+|++.+ ++..|..+++...
T Consensus 154 ELN~LE~eFL~lLdf~L~V-~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIP-RDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSC-CTTHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCceee-CHHHHHHHHHHHh
Confidence 9999999999999999975 4667777777654
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.59 E-value=0.018 Score=45.82 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHH
Q 026985 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i 158 (230)
++|.+.+..++++.++...|..++.+.....-.... ...-++++|+++|++..+. +...+++.. .++ .+..+|
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr---~P~~iAaAaly~A~~~~~~-~~t~~ei~~-~~~--vs~~ti 182 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGK---SPAGLVAAALYIASLLEGE-KRTQREVAE-VAR--VTEVTV 182 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHH-HHT--CCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCC---CHHHHHHHHHHHHHHHhCC-CCCHHHHHH-HhC--CCHHHH
Confidence 567788889999999999999999999987655554 5899999999999998764 346677764 343 688999
Q ss_pred HHHHHHHHHHcCCccc
Q 026985 159 RRMELLVLSVLDWRLR 174 (230)
Q Consensus 159 ~~~E~~IL~~L~f~l~ 174 (230)
.+.=+.+.+.|+-++.
T Consensus 183 ~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 183 RNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.55 E-value=0.22 Score=39.66 Aligned_cols=86 Identities=9% Similarity=0.032 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHH
Q 026985 78 VAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKT 157 (230)
Q Consensus 78 v~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~ 157 (230)
-+++.+.+..++++.++..+|..++..-+...-.... ...-++++|+++|++..+. +...+++.. ..+ ++..+
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~---~P~~IAaAaiylA~~~~~~-~~~~~~i~~-~~~--v~~~t 175 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGR---SPISVAAAAIYMASQASAE-KRTQKEIGD-IAG--VADVT 175 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTC---CHHHHHHHHHHHHHHTSSS-CCCHHHHHH-HHT--CCHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCC---ChHHHHHHHHHHHHHHHCC-CCCHHHHHH-HhC--CCHHH
Confidence 3456688889999999999999999998875544444 5889999999999998764 335556653 233 67888
Q ss_pred HHHHHHHHHHHcC
Q 026985 158 IRRMELLVLSVLD 170 (230)
Q Consensus 158 i~~~E~~IL~~L~ 170 (230)
|.+.=+.+.+.++
T Consensus 176 I~~~~~~l~~~l~ 188 (207)
T 1c9b_A 176 IRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777665
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.52 E-value=2.2 Score=34.77 Aligned_cols=88 Identities=9% Similarity=0.035 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCh----hHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCCh------hhhHHhc
Q 026985 79 AWILKVQAYYNFLP----LTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSL------LDLQVEG 148 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~----et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~------~~l~~~~ 148 (230)
+++...+..++.+. ++...|.++++.-+.....-.. ....+|++|+++|+++.+...|.. ...-...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQW---EPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhcc---ChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46667777778776 5778888888887765554444 578999999999999865432211 1111110
Q ss_pred cCCccCHHHHHHHHHHHHHHcC
Q 026985 149 AKYIFETKTIRRMELLVLSVLD 170 (230)
Q Consensus 149 ~~~~~t~~~i~~~E~~IL~~L~ 170 (230)
. ..++.++|...-..|++...
T Consensus 230 ~-~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 V-QDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp S-SSCCHHHHHHHHHHHHTTTS
T ss_pred c-cCCCHHHHHHHHHHHHHHHh
Confidence 1 14789999999999988654
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.42 E-value=4.3 Score=33.04 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHh-ccccCCCCCchhHHHHHHHHHHHHhhhhccCCChh---hhHHhccCCccC
Q 026985 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLY-SRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFE 154 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~~lAv~l~Drfl~-~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~---~l~~~~~~~~~t 154 (230)
+++......++.+.++..+|..++..-+. ....-.. ....+|++|+++|++..+...|... .... .-...++
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~-~~~~~~~ 223 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQY---KPTVIACVCIHLACKWSNWEIPVSTDGKHWWE-YVDPTVT 223 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTS---CHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGG-GTCSSCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcC---CHHHHHHHHHHHHHHHhCCCCCCCCCCchHHH-HhCCCCC
Confidence 35556667788888988999988866553 2223334 5789999999999999765433211 1111 1122478
Q ss_pred HHHHHHHHHHHHHHc
Q 026985 155 TKTIRRMELLVLSVL 169 (230)
Q Consensus 155 ~~~i~~~E~~IL~~L 169 (230)
.++|...-..|++.+
T Consensus 224 ~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 224 LELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=87.52 E-value=0.85 Score=36.95 Aligned_cols=82 Identities=10% Similarity=-0.061 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHH
Q 026985 80 WILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (230)
Q Consensus 80 Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~ 159 (230)
++...+...+++.++...|..++..-+.....-.. ....||++|+++|++..+...|. +-.. .. .++.++|.
T Consensus 137 ~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~--~~~~-~~--~~~~~~i~ 208 (235)
T 1zp2_A 137 SLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMA---HPHQLAYAALLISCCNDENTIPK--LLDL-IK--STDAFKVI 208 (235)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHTSCTTHHHH--HHHH-CC--HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhcc---CHHHHHHHHHHHHHHhcCCCCCC--Ccch-hh--cCCHHHHH
Confidence 44455556788999999999999987765544444 57899999999999986532221 1111 11 46788888
Q ss_pred HHHHHHHHHc
Q 026985 160 RMELLVLSVL 169 (230)
Q Consensus 160 ~~E~~IL~~L 169 (230)
..=..|++..
T Consensus 209 ~~~~~i~~ly 218 (235)
T 1zp2_A 209 LCVQRIISIY 218 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777653
No 25
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=86.39 E-value=6.1 Score=31.66 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcccc--CCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCcc
Q 026985 76 ESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRL--PDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIF 153 (230)
Q Consensus 76 ~lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i--~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~ 153 (230)
.+.+-|+.++.+-+++.-++--||.+--.|.-.+.- .+.+ +-+-++++|++||+. +...|.++.++-. -+...
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE--~q~dVAAAc~miAae-~~~~PiplaE~r~--lD~sL 88 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVE--RQPDVAAACLMIAAE-EAQQPLPLAEVRC--LDSSL 88 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCC--CHHHHHHHHHHHHHH-HTTCCCCHHHHHH--HCTTC
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccccc--ccHHHHHHHHHHHHH-HcCCCccHHHHHH--Hhhhh
Confidence 456667999999999999999999999999876542 2222 688999999999997 3455777777753 23334
Q ss_pred CHHHHHHHHHHHHHHcC
Q 026985 154 ETKTIRRMELLVLSVLD 170 (230)
Q Consensus 154 t~~~i~~~E~~IL~~L~ 170 (230)
..-++.+. +|++.++
T Consensus 89 ~Dvelrr~--Eiv~~l~ 103 (260)
T 3h4c_A 89 GDVELRRA--DIVRELH 103 (260)
T ss_dssp CCHHHHHH--HHHHHTT
T ss_pred hHHHHHHH--HHHHHcc
Confidence 43333333 3455554
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=84.59 E-value=1.9 Score=36.09 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHH
Q 026985 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i 158 (230)
+++...+..++.+.++..+|.+++..-+.....-.. ....||++|+++|++...... ..... . -.++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAaiylA~~~~~~~~---~~W~~-~--~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY---PPFMIALACLHVACVVQQKDA---RQWFA-E--LSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHS---CHHHHHHHHHHHHHHHTTCCC---HHHHH-T--SCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhcc---CHHHHHHHHHHHHHHHcCCCh---hhHHH-H--HCCCHHHH
Confidence 455666677788888899999998886654433333 478899999999999865432 22222 1 23788999
Q ss_pred HHHHHHHHHHcC
Q 026985 159 RRMELLVLSVLD 170 (230)
Q Consensus 159 ~~~E~~IL~~L~ 170 (230)
...-..|++...
T Consensus 230 ~~~~~~il~ly~ 241 (285)
T 3rgf_B 230 LEIIRVILKLYE 241 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887643
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=81.42 E-value=7.8 Score=31.51 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCChhHH----HHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCC----hhhhHHhccC
Q 026985 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS----LLDLQVEGAK 150 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~----~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~----~~~l~~~~~~ 150 (230)
+|+......++.+.++. ..|..+++.-+........ ..-.+|++|+++|.+.....+.. ...+.. .++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~---~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~-~tg 229 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALL---SPGLICAGGLLTTIETDNTNCRPWTCYLEDLSS-ILN 229 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTS---CHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHH-HHT
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhcc---CHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH-HHC
Confidence 34445555666766653 3466677755544444444 57899999999999985222222 334433 343
Q ss_pred CccCHHHHHHHHHHHHHHc
Q 026985 151 YIFETKTIRRMELLVLSVL 169 (230)
Q Consensus 151 ~~~t~~~i~~~E~~IL~~L 169 (230)
++.++|...=..|.+.+
T Consensus 230 --~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 230 --FSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHH
Confidence 78888888777766543
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=80.70 E-value=8.9 Score=31.24 Aligned_cols=87 Identities=7% Similarity=-0.099 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCChhH----HHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccC----CChhhhHHhcc
Q 026985 78 VAWILKVQAYYNFLPLT----SYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVV----PSLLDLQVEGA 149 (230)
Q Consensus 78 v~Wm~~v~~~~~l~~et----~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~----p~~~~l~~~~~ 149 (230)
.+|+.......+.+.++ ...|..+++.-+........ ..-.+|++|+++|.+..+..+ +...+.+...+
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t 228 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSL---PASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL 228 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGS---CHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCc---CHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH
Confidence 34555566666776665 34566777766654444444 578999999999999866321 22222222233
Q ss_pred CCccCHHHHHHHHHHHHHHc
Q 026985 150 KYIFETKTIRRMELLVLSVL 169 (230)
Q Consensus 150 ~~~~t~~~i~~~E~~IL~~L 169 (230)
+ ++.++|...=..|.+.+
T Consensus 229 ~--~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 229 G--CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp T--CCHHHHHHHHHHHHHHH
T ss_pred C--cCHHHHHHHHHHHHHHH
Confidence 3 78888887766666543
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=79.54 E-value=7.3 Score=31.80 Aligned_cols=85 Identities=7% Similarity=-0.080 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCh-hHHHHHHHHHHHHHhccc-cCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCH
Q 026985 78 VAWILKVQAYYNFLP-LTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFET 155 (230)
Q Consensus 78 v~Wm~~v~~~~~l~~-et~~lAv~l~Drfl~~~~-i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~ 155 (230)
.+|+......++.+. ++..+|-.+++.-+.... .... ....+|++|+++|.+.-+. ++-...+.. .++ ++.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~---~Ps~iAaAai~lA~~~~~~-~~w~~~l~~-~~g--~~~ 212 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKY---LPSVIAGAAFHLALYTVTG-QSWPESLIR-KTG--YTL 212 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTS---CHHHHHHHHHHHHHHHHHS-CCSCHHHHH-HHC--CCH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCC---CHHHHHHHHHHHHHHHhCC-CcchHHHHH-HhC--cCH
Confidence 356666677777665 677788888887664444 4444 4789999999999998654 222333332 333 788
Q ss_pred HHHHHHHHHHHHHc
Q 026985 156 KTIRRMELLVLSVL 169 (230)
Q Consensus 156 ~~i~~~E~~IL~~L 169 (230)
++|...=..|.+.+
T Consensus 213 ~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 213 ESLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776654
No 30
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=78.81 E-value=4 Score=35.37 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhccc-cCCCCCchhHHHHHHHHHHHHhhhhccCCCh---hhhHHhccCCccCH
Q 026985 80 WILKVQAYYNFLPLTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSL---LDLQVEGAKYIFET 155 (230)
Q Consensus 80 Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~-i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~---~~l~~~~~~~~~t~ 155 (230)
++......++.+.++..+|.+++..-+.... .-.. ....||++|+++|+++.+...|.. ..... .-+..++.
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y---~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~-~~~~~vt~ 231 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQY---TPPVVACVCIHLACKWSNWEIPVSTDGKHWWE-YVDATVTL 231 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTS---CHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTT-TSCSSCCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhcc---CHHHHHHHHHHHHHHHhCCCCCCCccccchHH-HHhccCCH
Confidence 4555666778888888999888866553222 2333 578999999999999976443321 11111 11124789
Q ss_pred HHHHHHHHHHHHHcC
Q 026985 156 KTIRRMELLVLSVLD 170 (230)
Q Consensus 156 ~~i~~~E~~IL~~L~ 170 (230)
++|...-..|+..++
T Consensus 232 ~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 232 ELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 31
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=72.19 E-value=5.5 Score=32.83 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhc
Q 026985 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEET 136 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~ 136 (230)
+|+...+...+++.++..+|-.+++.-+........ ..-.+|++|+++|.+.-+.
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~---~Ps~iAaAai~lA~~~l~~ 194 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHF---PPSQIAAGAFSLALKILDN 194 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSS---CTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcC---CHHHHHHHHHHHHHHHhCC
Confidence 466677777788888888898888887766555444 4678999999999998654
No 32
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=72.04 E-value=16 Score=29.99 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCChhHH----HHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhcc----C---CChhhhHHh
Q 026985 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETV----V---PSLLDLQVE 147 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~----~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~----~---p~~~~l~~~ 147 (230)
+|+......++.+.++. ..|..+++..+........ ..-.+|++|+++|.+.-+.. + +...+.+..
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISN---PPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHS---CHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhcc---CHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 45555566666666653 2455666644432222223 46789999999999875421 1 111222222
Q ss_pred ccCCccCHHHHHHHHHHHHHHcCCcc
Q 026985 148 GAKYIFETKTIRRMELLVLSVLDWRL 173 (230)
Q Consensus 148 ~~~~~~t~~~i~~~E~~IL~~L~f~l 173 (230)
.++ ++.++|...=..|++.++=.+
T Consensus 236 ~~~--v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 236 VIK--CDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HHT--SCHHHHHHHHHHHHHHHTTTT
T ss_pred HHC--cCHHHHHHHHHHHHHHHHHHH
Confidence 343 788899888888887766443
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=70.40 E-value=21 Score=29.93 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCChhH----HHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChh---hhHHhccCCc
Q 026985 80 WILKVQAYYNFLPLT----SYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYI 152 (230)
Q Consensus 80 Wm~~v~~~~~l~~et----~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~---~l~~~~~~~~ 152 (230)
|+......++.+.+. ...|-++++..+.....-.. ..-.+|++|+++|.+.-+..++... +.+...++
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~---~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg-- 248 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMY---PPSMIATGSIGAAVQGLGACSMSGDELTELLAGITG-- 248 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTS---CHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccC---CHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHC--
Confidence 333344444444332 23455666655555444444 5789999999999998765443311 22222343
Q ss_pred cCHHHHHHHHHHHHHHcCCcc
Q 026985 153 FETKTIRRMELLVLSVLDWRL 173 (230)
Q Consensus 153 ~t~~~i~~~E~~IL~~L~f~l 173 (230)
++.++|...=..|++.+.=.+
T Consensus 249 ~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 249 TEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 788999888888877665433
No 34
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=69.93 E-value=0.92 Score=39.18 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhc
Q 026985 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEET 136 (230)
Q Consensus 79 ~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~ 136 (230)
++|.+.+..++++.++...|..++.+.....-.... ...-|+++|+++|+++.+.
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr---~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGK---SPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCC---CHHHHHHHHHHHHHHHHCC
Confidence 556677778888888888888888887765443333 4778999999999998654
No 35
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=62.75 E-value=1.6 Score=37.82 Aligned_cols=57 Identities=5% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhc
Q 026985 77 SVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEET 136 (230)
Q Consensus 77 lv~Wm~~v~~~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~ 136 (230)
..++|.+.+..++++.++...|..++.+.....-.... ...-++++|+++|+++.+.
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR---~P~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGK---SPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCC---ChHHHHHHHHHHHHHHhCC
Confidence 44788889999999999999999999988875444444 4778999999999998653
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=61.00 E-value=32 Score=29.06 Aligned_cols=75 Identities=5% Similarity=-0.007 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCC-hhhhHHhccCCccCHHHHHHHHHHHHHHcC
Q 026985 92 PLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS-LLDLQVEGAKYIFETKTIRRMELLVLSVLD 170 (230)
Q Consensus 92 ~et~~lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~-~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~ 170 (230)
.+...+|..++..-+.....-.. ....||++|+++|++..+...+. ...+.. .....++.+++...=+.|...+.
T Consensus 185 ~~l~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~-~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 185 EILRKTADDFLNRIALTDAYLLY---TPSQIALTAILSSASRAGITMESYLSESLM-LKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHHHTTSTHHHHS---CHHHHHHHHHHHHHHHHSCCCTTHHHHHTT-SCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHcC---CHHHHHHHHHHHHHHHcCCChHHHHHHHhc-cccccccHHHHHHHHHHHHHHHH
Confidence 44566777887765543332233 47889999999999987654333 222221 12234677888888777776554
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=50.16 E-value=60 Score=22.44 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=54.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhccc------cCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccC
Q 026985 81 ILKVQAYYNFLPLTSYLSVNYMDRFLYSRR------LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (230)
Q Consensus 81 m~~v~~~~~l~~et~~lAv~l~Drfl~~~~------i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t 154 (230)
+.++|..|++.. ....|-.++++|=..-+ +..+ -.....+|+|.|+|.-...++.. .++. .++ .+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s----~P~f~aaA~~~acr~~K~kVdK~-KL~~-~s~--lk 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLS----RPLFTSAALLSACKILKLKVDKN-KMVA-TSG--VK 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTT----SHHHHHHHHHHHHHHTTCCCCHH-HHHH-TTC--BC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccc----ccHHHHHHHHHHHHHHccCCCHH-HHHH-HHC--CC
Confidence 457888999765 88888999999986532 2222 45667889999999987766443 3432 333 57
Q ss_pred HHHHHHHHHHHHHH
Q 026985 155 TKTIRRMELLVLSV 168 (230)
Q Consensus 155 ~~~i~~~E~~IL~~ 168 (230)
+.++-+.|..+-+.
T Consensus 77 ~~~f~~l~~~~e~~ 90 (95)
T 3m03_A 77 KAIFDRLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777766543
No 38
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=49.32 E-value=90 Score=26.25 Aligned_cols=63 Identities=10% Similarity=-0.040 Sum_probs=45.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhc----cccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHh
Q 026985 81 ILKVQAYYNFLPLTSYLSVNYMDRFLYS----RRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVE 147 (230)
Q Consensus 81 m~~v~~~~~l~~et~~lAv~l~Drfl~~----~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~ 147 (230)
..++|..++++..|.-.|..++.+.-.. ...... -+..-.+|+++|++-.+....++.+++..
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~----~~~~w~acLY~a~~~~~~n~vsLt~LLr~ 72 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK----KKELWGICIFIAAVDLDEMSFTFTELQKN 72 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C----HHHHHHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc----hHHHHHHhHHHHhhccCCCcCcHHHHHHH
Confidence 4578999999999999999999996653 123333 44455566999998877777788887753
No 39
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=46.99 E-value=29 Score=26.13 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHH
Q 026985 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (230)
Q Consensus 120 qlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~ 159 (230)
.|+-++|-++|.++....|-.++.... +. +-||.++-.
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~-I~-nd~t~eEe~ 149 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFN-IK-NDFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTT-CC-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcC-CC-CCCCHHHHH
Confidence 688899999999998877777777663 33 348876543
No 40
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=40.87 E-value=42 Score=25.53 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHH
Q 026985 119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (230)
Q Consensus 119 lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~ 159 (230)
-.|+-++|-.+|.++.+..|-.++.... +. +-||.++-.
T Consensus 119 k~Lldl~c~~vA~~ikgktpeeiR~~f~-I~-nd~t~eEe~ 157 (169)
T 3v7d_A 119 KPLLDAGCKVVAEMIRGRSPEEIRRTFN-IV-NDFTPEEEA 157 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT-CC-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcC-CC-CCCCHHHHH
Confidence 4688899999999998887777777663 33 348877643
No 41
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=35.88 E-value=63 Score=23.58 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHH------------------------cCCChhHHH-
Q 026985 42 ESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAY------------------------YNFLPLTSY- 96 (230)
Q Consensus 42 e~l~~ll~~E~~~~~~~~~~~~~~~~~i~~~~R~~lv~Wm~~v~~~------------------------~~l~~et~~- 96 (230)
..+++|++... .+ .+.-++++...=.++++|+..-... ++++.++++
T Consensus 25 ~~ik~ml~~~~-----~~---~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~e 96 (141)
T 1fs1_B 25 VTIKTMLEDLG-----MD---PVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFE 96 (141)
T ss_dssp HHHHHHHHHTC-----CS---SEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHhcC-----CC---ceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHH
Confidence 46778876532 11 1334468888888999998754311 344444433
Q ss_pred --HHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhH
Q 026985 97 --LSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQ 145 (230)
Q Consensus 97 --lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~ 145 (230)
+|.+|+| --.|+-++|-.+|.++.+..|-.++...
T Consensus 97 Li~AAnyL~--------------I~~Lldl~c~~vA~~ikgkt~eeiR~~f 133 (141)
T 1fs1_B 97 LILAANYLD--------------IKGLLDVTCKTVANMIKGKTPEEIRKTF 133 (141)
T ss_dssp HHHHHHHHT--------------CHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHh--------------hhHHHHHHHHHHHHHHcCCCHHHHHHHc
Confidence 2333332 1367788899999998876665555544
No 42
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=35.73 E-value=1.8e+02 Score=23.73 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHHHHHHHHHH
Q 026985 97 LSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLS 167 (230)
Q Consensus 97 lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~~~E~~IL~ 167 (230)
.+..++|.-+........ ..-.+|++|+++|+.. +.+. ..++ ++.++|...-+.|..
T Consensus 182 ~~~~llelsl~d~~~l~~---~PS~iAaAai~la~~~--------~~l~-~~tg--~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 182 QIAELLDLCVLDVDCLEF---PYGILAASALYHFSSS--------ELMQ-KVSG--YQWCDIENCVKWMVP 238 (283)
T ss_dssp HHHHHHHHHHHSGGGGGS---CHHHHHHHHHHHTSCH--------HHHH-HHSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhcC---CHHHHHHHHHHHHHCh--------HHHH-HHhC--CCHHHHHHHHHHHHH
Confidence 344455544433333333 3567899999998742 2222 2343 678888776666544
No 43
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=28.02 E-value=47 Score=17.35 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 026985 155 TKTIRRMELLVLSVLDWR 172 (230)
Q Consensus 155 ~~~i~~~E~~IL~~L~f~ 172 (230)
.++|...|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 589999999999999886
No 44
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=27.85 E-value=2.1e+02 Score=22.93 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHhhhhccCCC----hhhhHHhccCCccCHHHHHHHHHHHHHHc
Q 026985 97 LSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS----LLDLQVEGAKYIFETKTIRRMELLVLSVL 169 (230)
Q Consensus 97 lAv~l~Drfl~~~~i~~~~~~~lqlv~~~cL~IAsK~ee~~~p~----~~~l~~~~~~~~~t~~~i~~~E~~IL~~L 169 (230)
+|..+++..+.....-.. ..-.+|++|+..+.+ ...+. ...+. ..++ ++.+++...-..|.+.|
T Consensus 173 ~a~~~l~~~l~d~~~l~~---~PS~iAaaa~~~~l~---~~~~~~~~~~~~L~-~~t~--~~~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 173 LCRPKIFCALCDGRSAMK---RPVLITLACMHLTMN---QKYDYYENRIDGVC-KSLY--ITKEELHQCCDLVDIAI 240 (252)
T ss_dssp HHHHHHHHHHHCHHHHTS---CHHHHHHHHHHHHHT---TTCHHHHHHHHHHH-HHTT--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhcc---CHHHHHHHHHHHHhc---cCCCchhhHHHHHH-HHHC--cCHHHHHHHHHHHHHHH
Confidence 344444544443333333 356778888655442 11222 12222 2333 77888888877777655
No 45
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=26.86 E-value=1.6e+02 Score=21.72 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHH------------------------HcCCChhHHHHHHHHHHHHHhccccCCCCCchhHH
Q 026985 66 THSLDASAREESVAWILKVQA------------------------YYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQL 121 (230)
Q Consensus 66 ~~~i~~~~R~~lv~Wm~~v~~------------------------~~~l~~et~~lAv~l~Drfl~~~~i~~~~~~~lql 121 (230)
-++++...=..+++|+..-.. .++++.++++- -.+...... --.|
T Consensus 46 l~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~e------Ll~AAnyL~-----I~~L 114 (159)
T 2ast_A 46 LPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFE------LILAANYLD-----IKGL 114 (159)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHH------HHHHHHHHT-----CHHH
T ss_pred CCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHH------HHHHHHHHh-----HHHH
Confidence 345788888888888875331 13455554432 222221111 1467
Q ss_pred HHHHHHHHHHhhhhccCCChhhhHHhccCCccCHHHHH
Q 026985 122 LSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (230)
Q Consensus 122 v~~~cL~IAsK~ee~~~p~~~~l~~~~~~~~~t~~~i~ 159 (230)
+-++|-++|.++....|-.++.... +. +-||.++-.
T Consensus 115 ld~~c~~va~~i~gkt~eeir~~f~-I~-~d~t~eEe~ 150 (159)
T 2ast_A 115 LDVTCKTVANMIKGKTPEEIRKTFN-IK-NDFTEEEEA 150 (159)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHTT-CC-CCSCTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcC-CC-CCCCHHHHH
Confidence 8889999999998887777777664 33 347766543
No 46
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=23.03 E-value=58 Score=23.07 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 026985 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDR 104 (230)
Q Consensus 74 R~~lv~Wm~~v~~~~~l~~et~~lAv~l~Dr 104 (230)
=..+|+||++.. ...=..|+++++-.+++.
T Consensus 40 GselVdWLi~~~-~~~~R~EAv~lgq~Ll~~ 69 (109)
T 1uhw_A 40 GSGVIDWLVSNK-LVRNRQEGLMISASLLSE 69 (109)
T ss_dssp HHHHHHHHHHHT-SSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 358999999943 222345677777776664
Done!