BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026986
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W72|A Chain A, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
pdb|1W72|D Chain D, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
pdb|3BO8|A Chain A, The High Resolution Crystal Structure Of Hla-A1
Complexed With The Mage-A1 Peptide
Length = 274
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETR 65
>pdb|1Q94|A Chain A, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1Q94|D Chain D, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1QVO|A Chain A, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1QVO|D Chain D, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1X7Q|A Chain A, Crystal Structure Of Hla-A1101 With Sars Nucleocapsid
Peptide
pdb|2HN7|A Chain A, Hla-A1101 In Complex With Hbv Peptide Homologue
Length = 275
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 65
>pdb|2XPG|A Chain A, Crystal Structure Of A Mhc Class I-Peptide Complex
pdb|3RL1|A Chain A, Hiv Rt Derived Peptide Complexed To Hla-A0301
pdb|3RL2|A Chain A, Hiv Nef Derived Peptide Nef73 Complexed To Hla-A0301
Length = 274
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 65
>pdb|1KPR|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|1KPR|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|1KTL|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|1KTL|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
Length = 274
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSF-NFLPWAHSESGIEWVQEERVTL 77
SVSR R F+ SV Y ++F+RF DAAS PW E W +E R
Sbjct: 11 SVSRPGRGEPRFI--SVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSAR 68
Query: 78 FTA 80
TA
Sbjct: 69 DTA 71
>pdb|3BZF|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|3BZF|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|3AM8|A Chain A, Crystal Structure Of A Human Major Histocompatibilty
Complex
pdb|3AM8|B Chain B, Crystal Structure Of A Human Major Histocompatibilty
Complex
Length = 276
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSF-NFLPWAHSESGIEWVQEERVTL 77
SVSR R F+ SV Y ++F+RF DAAS PW E W +E R
Sbjct: 11 SVSRPGRGEPRFI--SVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSAR 68
Query: 78 FTA 80
TA
Sbjct: 69 DTA 71
>pdb|2ESV|A Chain A, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 275
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSF-NFLPWAHSESGIEWVQEERVTL 77
SVSR R F+ SV Y ++F+RF DAAS PW E W +E R
Sbjct: 10 SVSRPGRGEPRFI--SVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSAR 67
Query: 78 FTA 80
TA
Sbjct: 68 DTA 70
>pdb|1MHE|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
pdb|1MHE|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla-E
Length = 274
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSF-NFLPWAHSESGIEWVQEERVTL 77
SVSR R F+ SV Y ++F+RF DAAS PW E W +E R
Sbjct: 11 SVSRPGRGEPRFI--SVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSAR 68
Query: 78 FTA 80
TA
Sbjct: 69 DTA 71
>pdb|3CDG|A Chain A, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|C Chain C, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3BZE|A Chain A, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3BZE|C Chain C, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3BZE|E Chain E, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3BZE|G Chain G, The Human Non-Classical Major Histocompatibility Complex
Molecule Hla- E
pdb|3CII|A Chain A, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|D Chain D, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 273
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSF-NFLPWAHSESGIEWVQEERVTL 77
SVSR R F+ SV Y ++F+RF DAAS PW E W +E R
Sbjct: 10 SVSRPGRGEPRFI--SVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSAR 67
Query: 78 FTA 80
TA
Sbjct: 68 DTA 70
>pdb|3TF7|E Chain E, 42f3 Ql9H2-Ld Complex
pdb|3TF7|A Chain A, 42f3 Ql9H2-Ld Complex
pdb|3TFK|A Chain A, 42f3-P4b10H2-Ld
pdb|3TJH|A Chain A, 42f3-P3a1H2-Ld Complex
pdb|3TPU|I Chain I, 42f3 P5e8H2-Ld Complex
pdb|3TPU|E Chain E, 42f3 P5e8H2-Ld Complex
pdb|3TPU|K Chain K, 42f3 P5e8H2-Ld Complex
pdb|3TPU|Q Chain Q, 42f3 P5e8H2-Ld Complex
Length = 180
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 14 YSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
Y + R L EP TSV Y F+RF +DA + + +PW E W
Sbjct: 8 YYETATSRRGLGEPR---YTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYW--- 61
Query: 73 ERVT 76
ER+T
Sbjct: 62 ERIT 65
>pdb|3E2H|A Chain A, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr
In Complex With LdQL9
pdb|3E3Q|A Chain A, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|B Chain B, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|CC Chain c, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|H Chain H, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|L Chain L, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|P Chain P, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|U Chain U, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|Y Chain Y, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
Length = 175
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 14 YSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
Y + R L EP TSV Y F+RF +DA + + +PW E W
Sbjct: 7 YYETATSRRGLGEPR---YTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYW--- 60
Query: 73 ERVT 76
ER+T
Sbjct: 61 ERIT 64
>pdb|2OI9|A Chain A, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 179
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 14 YSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
Y + R L EP TSV Y F+RF +DA + + +PW E W
Sbjct: 7 YYETATSRRGLGEPR---YTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYW--- 60
Query: 73 ERVT 76
ER+T
Sbjct: 61 ERIT 64
>pdb|3ERY|A Chain A, Different Thermodynamic Binding Mechanisms And Peptide
Fine Specificities Associated With A Panel Of
Structurally Similar High-Affinity T Cell Receptors
pdb|3ERY|B Chain B, Different Thermodynamic Binding Mechanisms And Peptide
Fine Specificities Associated With A Panel Of
Structurally Similar High-Affinity T Cell Receptors
Length = 174
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 14 YSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
Y + R L EP TSV Y F+RF +DA + + +PW E W
Sbjct: 7 YYETATSRRGLGEPR---YTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYW--- 60
Query: 73 ERVT 76
ER+T
Sbjct: 61 ERIT 64
>pdb|2BCK|A Chain A, Crystal Structure Of Hla-A2402 Complexed With A
Telomerase Peptide
pdb|2BCK|D Chain D, Crystal Structure Of Hla-A2402 Complexed With A
Telomerase Peptide
Length = 294
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
SVSR R F+ +V Y ++F+RF +DAAS PW E W +E
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDEE 63
>pdb|4F7M|A Chain A, Crystal Structure Of Hla-A2402 Complexed With A Newly
Identified Peptide From 2009 H1n1 Pa (649-658)
pdb|4F7M|D Chain D, Crystal Structure Of Hla-A2402 Complexed With A Newly
Identified Peptide From 2009 H1n1 Pa (649-658)
pdb|4F7P|A Chain A, Crystal Structure Of Hla-A2402 Complexed With A Newly
Identified Peptide From 2009h1n1 Pb1 (496-505)
pdb|4F7T|A Chain A, Crystal Structure Of Hla-A2402 Complexed With A Newly
Identified Peptide From 2009 H1n1 Pb1 (498-505)
pdb|4F7T|D Chain D, Crystal Structure Of Hla-A2402 Complexed With A Newly
Identified Peptide From 2009 H1n1 Pb1 (498-505)
Length = 275
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
SVSR R F+ +V Y ++F+RF +DAAS PW E W +E
Sbjct: 12 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDEE 64
>pdb|1ZVS|A Chain A, Crystal Structure Of The First Class Mhc Mamu And
Tat-Tl8 Complex
pdb|1ZVS|D Chain D, Crystal Structure Of The First Class Mhc Mamu And
Tat-Tl8 Complex
Length = 278
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
S+SR R F+ +V Y ++F+RF +DAAS PW E W +E R
Sbjct: 11 SMSRPGRGQPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWVEQEGPEYWDRETR 65
>pdb|3I6L|D Chain D, Newly Identified Epitope N1 Derived From Sars-Cov N
Protein Complexed With Hla-A2402
pdb|3NFN|A Chain A, Recognition Of Peptide-Mhc By A V-DeltaV-Beta Tcr
pdb|3QZW|A Chain A, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|D Chain D, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
Length = 274
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQE 72
SVSR R F+ +V Y ++F+RF +DAAS PW E W +E
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDEE 63
>pdb|2JCC|A Chain A, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2JCC|H Chain H, Ah3 Recognition Of Mutant Hla-A2 W167a
Length = 275
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|1HLA|A Chain A, Structure Of The Human Class I Histocompatibility
Antigen, Hla-A2
pdb|3HLA|A Chain A, Human Class I Histocompatibility Antigen A2.1
Length = 270
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3MRB|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcmv Pp65-495-503 Nonapeptide A7h
Variant
pdb|3MRC|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcmv Pp65-495-503 Nonapeptide V6c
Variant
pdb|3MRD|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcmv Pp65-495-503 Nonapeptide V6g
Variant
Length = 276
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3H9H|A Chain A, Human Class I Mhc Hla-A2(A150p) In Complex With The
Tel1p Peptide
pdb|3H9H|D Chain D, Human Class I Mhc Hla-A2(A150p) In Complex With The
Tel1p Peptide
pdb|3IXA|A Chain A, Human Class I Mhc Hla-A2(A150p) In Complex With The Tax
Peptide
pdb|3IXA|D Chain D, Human Class I Mhc Hla-A2(A150p) In Complex With The Tax
Peptide
Length = 275
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|1AKJ|A Chain A, Complex Of The Human Mhc Class I Glycoprotein Hla-A2 And
The T Cell Coreceptor Cd8
pdb|1OGA|A Chain A, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition.
pdb|1P7Q|A Chain A, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
Viral Mhc Receptor
pdb|2BNQ|A Chain A, Structural And Kinetic Basis For Heightened
Immunogenicity Of T Cell Vaccines
pdb|2BNR|A Chain A, Structural And Kinetic Basis For Heightened
Immunogenicity Of T Cell Vaccines
pdb|2C7U|A Chain A, Conflicting Selective Forces Affect Cd8 T-Cell Receptor
Contact Sites In An Hla-A2 Immunodominant Hiv Epitope.
pdb|2C7U|D Chain D, Conflicting Selective Forces Affect Cd8 T-Cell Receptor
Contact Sites In An Hla-A2 Immunodominant Hiv Epitope.
pdb|2P5E|A Chain A, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Reveal Native Diagonal Binding
Geometry
pdb|2P5W|A Chain A, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Reveal Native Diagonal Binding
Geometry
pdb|2PYE|A Chain A, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Revealnative Diagonal Binding
Geometry Tcr Clone C5c1 Complexed With Mhc
pdb|2V2W|A Chain A, T Cell Cross-Reactivity And Conformational Changes
During Tcr Engagement
pdb|2V2W|D Chain D, T Cell Cross-Reactivity And Conformational Changes
During Tcr Engagement
pdb|2V2X|A Chain A, T Cell Cross-Reactivity And Conformational Changes
During Tcr Engagement.
pdb|2V2X|D Chain D, T Cell Cross-Reactivity And Conformational Changes
During Tcr Engagement.
pdb|2VLJ|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLL|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLL|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|F Chain F, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|3GJF|A Chain A, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3GJF|D Chain D, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|A Chain A, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|D Chain D, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|J Chain J, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|P Chain P, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HG1|A Chain A, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
pdb|3O4L|A Chain A, Genetic And Structural Basis For Selection Of A
Ubiquitous T Cell Receptor Deployed In Epstein-Barr
Virus
pdb|3UTQ|A Chain A, Human Hla-A0201-Alwgpdpaaa
pdb|3UTS|A Chain A, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|3UTS|F Chain F, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|4GKN|A Chain A, A2-Mhc Complex Carrying Fatgigiitv
pdb|4GKN|D Chain D, A2-Mhc Complex Carrying Fatgigiitv
pdb|4GKS|A Chain A, A2-Mhc Complex Carrying Fltgigiitv
pdb|4GKS|D Chain D, A2-Mhc Complex Carrying Fltgigiitv
pdb|4I4W|A Chain A, Peptide Length Determines The Outcome Of T Cell
ReceptorPEPTIDE-Mhci Engagement
Length = 276
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|2AV7|A Chain A, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The K66a Mutation In The Heavy
Chain.
pdb|2AV7|D Chain D, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The K66a Mutation In The Heavy
Chain.
pdb|2J8U|A Chain A, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation.
pdb|2J8U|H Chain H, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation
Length = 275
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEERV 75
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRA 66
>pdb|3GSN|H Chain H, Crystal Structure Of The Public Ra14 Tcr In Complex With
The Hcmv Dominant NlvHLA-A2 Epitope
pdb|3GSO|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv Peptide
pdb|3GSQ|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv-M5s Peptide Variant
pdb|3GSR|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv-M5v Peptide Variant
pdb|3GSW|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv-T8a Peptide Variant
pdb|3GSX|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv-T8v Peptide Variant
Length = 274
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3FT2|A Chain A, Crystal Structure Of A Citrulline Peptide Variant Of The
Minor Histocompatibility Peptide Ha-1 In Complex With
Hla- A2
pdb|3FT3|A Chain A, Crystal Structure Of The Minor Histocompatibility
Peptide Ha-1his In Complex With Hla-A2
pdb|3FT4|A Chain A, Crystal Structure Of The Minor Histocompatibility
Peptide Ha-1arg In Complex With Hla-A2
pdb|3GSU|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv-M5t Peptide Variant
pdb|3GSV|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2
And Hcmv Nlv-M5q Peptide Variant
Length = 275
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|1QSF|A Chain A, Structure Of A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide Y8a
Length = 274
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3MR9|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcmv Pp65-495-503 Nonapeptide M5a
Variant
pdb|3MRE|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Ebv Bmlf1-280-288 Nonapeptide
pdb|3MRF|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Ebv Bmlf1-280-288 Nonapeptide T4p
Variant
pdb|3MRG|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns3-1073-1081 Nonapeptide
pdb|3MRH|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns3-1073-1081 Nonapeptide N3s
Variant
pdb|3MRI|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns3-1073-1081 Nonapeptide G4m-V5w
Variant
pdb|3MRJ|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns3-1073-1081 Nonapeptide V5m
Variant
pdb|3MRK|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Afp137 Nonapeptide
pdb|3MRL|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns3-1073-1081 Nonapeptide C6v
Variant
pdb|3MRM|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns3-1406-1415 Decapeptide
pdb|3MRN|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Hcv Ns4b-1807-1816 Decapeptide
pdb|3MRO|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Melan- A Mart1 Decapeptide Variant
pdb|3MRP|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Melan- A Mart1 Decapeptide Variant
pdb|3MRQ|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Melan- A Mart1 Decapeptide Variant
pdb|3MRR|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule
Complexed With Human Prostaglandin Transporter
Decapeptide
Length = 293
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|1QRN|A Chain A, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
pdb|1QSE|A Chain A, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
pdb|1S9W|A Chain A, Crystal Structure Analysis Of Ny-eso-1 Epitope,
Sllmwitqc, In Complex With Hla-a2
pdb|1S9X|A Chain A, Crystal Structure Analysis Of Ny-Eso-1 Epitope Analogue,
Sllmwitqa, In Complex With Hla-A2
pdb|1S9Y|A Chain A, Crystal Structure Analysis Of Ny-Eso-1 Epitope Analogue,
Sllmwitqs, In Complex With Hla-A2
pdb|2F54|A Chain A, Directed Evolution Of Human T Cell Receptor Cdr2
Residues By Phage Display Dramatically Enhances
Affinity For Cognate Peptide-Mhc Without Increasing
Apparent Cross-Reactivity
pdb|2F54|F Chain F, Directed Evolution Of Human T Cell Receptor Cdr2
Residues By Phage Display Dramatically Enhances
Affinity For Cognate Peptide-Mhc Without Increasing
Apparent Cross-Reactivity
pdb|3BGM|A Chain A, Crystal Structure Of Pkd2 Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3BH8|A Chain A, Crystal Structure Of Rqa_m Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3BHB|A Chain A, Crystal Structure Of Kmd Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3D25|A Chain A, Crystal Structure Of Ha-1 Minor Histocompatibility
Antigen Bound To Human Class I Mhc Hla-A2
Length = 274
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3OXS|A Chain A, Crystal Structure Of Hla A02:07 Bound To Hbv Core 18-27
Length = 275
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3OXR|A Chain A, Crystal Structure Of Hla A02:06 Bound To Hbv Core 18-27
Length = 275
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3JTS|A Chain A, Gy9-Mamu-A02-Hb2m
pdb|3JTS|D Chain D, Gy9-Mamu-A02-Hb2m
pdb|3JTS|G Chain G, Gy9-Mamu-A02-Hb2m
pdb|3JTT|A Chain A, Cystal Structure Of Rhesus Macaque Mhc Class I:mamu-A02
pdb|3JTT|D Chain D, Cystal Structure Of Rhesus Macaque Mhc Class I:mamu-A02
pdb|3JTT|G Chain G, Cystal Structure Of Rhesus Macaque Mhc Class I:mamu-A02
Length = 276
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
S+SR R F+ +V Y ++F+RF +DAAS PW E W +E R
Sbjct: 11 SMSRPGRWEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWVEQEGPEYWDRETR 65
>pdb|2UWE|A Chain A, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation
pdb|2UWE|H Chain H, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation
Length = 275
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|1HHG|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHG|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHH|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHI|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHI|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHJ|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHJ|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHK|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHK|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|2CLR|A Chain A, Three Dimensional Structure Of A Peptide Extending Out
One End Of A Class I Mhc Binding Site
pdb|2CLR|D Chain D, Three Dimensional Structure Of A Peptide Extending Out
One End Of A Class I Mhc Binding Site
pdb|1AO7|A Chain A, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
pdb|1BD2|A Chain A, Complex Between Human T-Cell Receptor B7, Viral Peptide
(Tax) And Mhc Class I Molecule Hla-A 0201
pdb|1B0G|A Chain A, Class I Histocompatibility Antigen (Hla-A2.1)BETA 2-
MicroglobulinPEPTIDE P1049 COMPLEX
pdb|1B0G|D Chain D, Class I Histocompatibility Antigen (Hla-A2.1)BETA 2-
MicroglobulinPEPTIDE P1049 COMPLEX
pdb|1B0R|A Chain A, Crystal Structure Of Hla-A0201 Complexed With A Peptide
With The Carboxyl-Terminal Group Substituted By A
Methyl Group
pdb|1QR1|A Chain A, Poor Binding Of A Her-2NEU EPITOPE (GP2) TO HLA-A2.1 Is
Due To A Lack Of Interactions In The Center Of The
Peptide
pdb|1QR1|D Chain D, Poor Binding Of A Her-2NEU EPITOPE (GP2) TO HLA-A2.1 Is
Due To A Lack Of Interactions In The Center Of The
Peptide
pdb|1I1Y|A Chain A, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1I1Y|D Chain D, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1I1F|A Chain A, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1I1F|D Chain D, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1DUY|A Chain A, Crystal Structure Of Hla-A0201OCTAMERIC TAX PEPTIDE
Complex
pdb|1DUY|D Chain D, Crystal Structure Of Hla-A0201OCTAMERIC TAX PEPTIDE
Complex
pdb|1DUZ|A Chain A, Human Class I Histocompatibility Antigen (Hla-A 0201) In
Complex With A Nonameric Peptide From Htlv-1 Tax
Protein
pdb|1DUZ|D Chain D, Human Class I Histocompatibility Antigen (Hla-A 0201) In
Complex With A Nonameric Peptide From Htlv-1 Tax
Protein
pdb|1IM3|A Chain A, Crystal Structure Of The Human Cytomegalovirus Protein
Us2 Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1IM3|E Chain E, Crystal Structure Of The Human Cytomegalovirus Protein
Us2 Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1IM3|I Chain I, Crystal Structure Of The Human Cytomegalovirus Protein
Us2 Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1IM3|M Chain M, Crystal Structure Of The Human Cytomegalovirus Protein
Us2 Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1I4F|A Chain A, Crystal Structure Of Hla-A0201MAGE-A4-Peptide Complex
pdb|1JF1|A Chain A, Crystal Structure Of Hla-A20201 In Complex With A
Decameric Altered Peptide Ligand From The Mart-1MELAN-A
pdb|1JHT|A Chain A, Crystal Structure Of Hla-A20201 In Complex With A
Nonameric Altered Peptide Ligand (Algigiltv) From The
Mart- 1MELAN-A.
pdb|1I7R|A Chain A, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1058
pdb|1I7R|D Chain D, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1058
pdb|1I7T|A Chain A, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-5v
pdb|1I7T|D Chain D, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-5v
pdb|1I7U|A Chain A, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-6v
pdb|1I7U|D Chain D, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-6v
pdb|1EEY|A Chain A, Crystal Structure Determination Of Hla A2 Complexed To
Peptide Gp2 With The Substitution (I2lV5LL9V)
pdb|1EEY|D Chain D, Crystal Structure Determination Of Hla A2 Complexed To
Peptide Gp2 With The Substitution (I2lV5LL9V)
pdb|1EEZ|A Chain A, Crystal Structure Determination Of Hla-A2.1 Complexed To
Gp2 Peptide Variant(I2lV5L)
pdb|1EEZ|D Chain D, Crystal Structure Determination Of Hla-A2.1 Complexed To
Gp2 Peptide Variant(I2lV5L)
pdb|1LP9|A Chain A, Xenoreactive Complex Ahiii 12.2 Tcr Bound To
P1049HLA-A2.1
pdb|1LP9|H Chain H, Xenoreactive Complex Ahiii 12.2 Tcr Bound To
P1049HLA-A2.1
pdb|1QEW|A Chain A, Human Class I Histocompatibility Antigen (Hla-A 0201)
Complex With A Nonameric Peptide From
Melanoma-Associated Antigen 3 (Residues 271-279)
pdb|1TVB|A Chain A, Crystal Structure Of Melanoma Antigen Gp100(209-217)
Bound To Human Class I Mhc Hla-A2
pdb|1TVB|D Chain D, Crystal Structure Of Melanoma Antigen Gp100(209-217)
Bound To Human Class I Mhc Hla-A2
pdb|1TVH|A Chain A, Crystal Structure Of Modified Melanoma Antigen
Gp100(209-T2m) Bound To Human Class I Mhc Hla-A2
pdb|1TVH|D Chain D, Crystal Structure Of Modified Melanoma Antigen
Gp100(209-T2m) Bound To Human Class I Mhc Hla-A2
pdb|1S8D|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant
Sl9-3a
pdb|1T1W|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant
Sl9-3f6i8v
pdb|1T1X|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant
Sl9-4l
pdb|1T1Y|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant
Sl9-5v
pdb|1T1Z|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant
Sl9-6a
pdb|1T20|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant
Sl9-6i
pdb|1T21|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant Sl9,
Monoclinic Crystal
pdb|1T22|A Chain A, Structural Basis For Degenerate Recognition Of Hiv
Peptide Variants By Cytotoxic Lymphocyte, Variant Sl9,
Orthorhombic Crystal
pdb|2F53|A Chain A, Directed Evolution Of Human T-Cell Receptor Cdr2
Residues By Phage Display Dramatically Enhances
Affinity For Cognate Peptide-Mhc Without Apparent
Cross-Reactivity
pdb|2GIT|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Modified
Htlv-1 Tax (Y5k- 4-[3-Indolyl]-Butyric Acid) Peptide
pdb|2GIT|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Modified
Htlv-1 Tax (Y5k- 4-[3-Indolyl]-Butyric Acid) Peptide
pdb|2GJ6|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|2GT9|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Decameric
Melan-AMART- 1(26-35) Peptide
pdb|2GT9|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Decameric
Melan-AMART- 1(26-35) Peptide
pdb|2GTW|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A27l Substitution
pdb|2GTW|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A27l Substitution
pdb|2GTZ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A28l Substitution
pdb|2GTZ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A28l Substitution
pdb|2GUO|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Native
Nonameric Melan- AMART-1(27-35) Peptide
pdb|2GUO|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Native
Nonameric Melan- AMART-1(27-35) Peptide
pdb|3BH9|A Chain A, Crystal Structure Of Rty Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3FQN|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQR|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQT|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQU|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQW|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQX|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3D39|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(4-Fluorophenylalanine)) Peptide
pdb|3D3V|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
pdb|3GIV|A Chain A, Antigen Processing Influences Hiv-Specific Cytotoxic T
Lymphocyte Immunodominance
pdb|3GIV|D Chain D, Antigen Processing Influences Hiv-Specific Cytotoxic T
Lymphocyte Immunodominance
pdb|3H7B|A Chain A, Human Class I Mhc Hla-a2 In Complex With The Tel1p
Peptide
pdb|3H7B|D Chain D, Human Class I Mhc Hla-a2 In Complex With The Tel1p
Peptide
pdb|3H9S|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3KLA|A Chain A, Ca2+ Release From The Endoplasmic Reticulum Of Ny-Eso-1
Specific T Cells Is Modulated By The Affinity Of T Cell
Receptor And By The Use Of The Cd8 Co-Receptor
pdb|3KLA|D Chain D, Ca2+ Release From The Endoplasmic Reticulum Of Ny-Eso-1
Specific T Cells Is Modulated By The Affinity Of T Cell
Receptor And By The Use Of The Cd8 Co-Receptor
pdb|2X4N|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Residual Fragments Of A Photocleavable Peptide That Is
Cleaved Upon Uv-Light Treatment
pdb|2X4N|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Residual Fragments Of A Photocleavable Peptide That Is
Cleaved Upon Uv-Light Treatment
pdb|2X4O|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Envelope Peptide Env120-128
pdb|2X4O|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Envelope Peptide Env120-128
pdb|2X4P|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4P|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4Q|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4Q|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4R|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Cytomegalovirus (Cmv) Pp65 Epitope
pdb|2X4R|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Cytomegalovirus (Cmv) Pp65 Epitope
pdb|2X4S|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peptide Representing The Epitope Of The H5n1 (Avian
Flu) Nucleoprotein
pdb|2X4S|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peptide Representing The Epitope Of The H5n1 (Avian
Flu) Nucleoprotein
pdb|2X4T|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peiodate-Cleavable Peptide
pdb|2X4T|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peiodate-Cleavable Peptide
pdb|2X4U|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Peptide Rt468-476
pdb|2X4U|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Peptide Rt468-476
pdb|3MGO|A Chain A, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGO|D Chain D, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGO|G Chain G, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGO|J Chain J, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGT|A Chain A, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3MGT|D Chain D, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3MGT|G Chain G, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3MGT|J Chain J, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3I6G|A Chain A, Newly Identified Epitope Mn2 From Sars-Cov M Protein
Complexed Withhla-A0201
pdb|3I6G|D Chain D, Newly Identified Epitope Mn2 From Sars-Cov M Protein
Complexed Withhla-A0201
pdb|3I6K|A Chain A, Newly Identified Epitope From Sars-Cov Membrane Protein
Complexed With Hla-A0201
pdb|3I6K|E Chain E, Newly Identified Epitope From Sars-Cov Membrane Protein
Complexed With Hla-A0201
pdb|3HPJ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) Peptide
pdb|3HPJ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) Peptide
pdb|3MYJ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) (R1y) Peptide Variant.
pdb|3MYJ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) (R1y) Peptide Variant.
pdb|2X70|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X70|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|3O3A|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1
pdb|3O3A|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1
pdb|3O3B|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1.1
pdb|3O3B|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1.1
pdb|3O3D|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2
pdb|3O3D|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2
pdb|3O3E|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2.1
pdb|3O3E|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2.1
pdb|3PWJ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Hud
(G2l,I9v) Peptide Variant
pdb|3PWJ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Hud
(G2l,I9v) Peptide Variant
pdb|3PWL|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Hud Peptide
pdb|3PWL|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Hud Peptide
pdb|3PWN|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Hud (G2l)
Peptide Variant
pdb|3PWN|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Hud (G2l)
Peptide Variant
pdb|3PWP|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QDG|A Chain A, The Complex Between Tcr Dmf5 And Human Class I Mhc
Hla-A2 With The Bound Mart-1(26-35)(A27l) Peptide
pdb|3QDJ|A Chain A, The Complex Between Tcr Dmf5 And Human Class I Mhc
Hla-A2 With The Bound Mart-1(27-35) Nonameric Peptide
pdb|3QDM|A Chain A, The Complex Between Tcr Dmf4 And Human Class I Mhc
Hla-A2 With The Bound Mart-1(26-35)(A27l) Decameric
Peptide
pdb|3QEQ|A Chain A, The Complex Between Tcr Dmf4 And Human Class I Mhc
Hla-A2 With The Bound Mart-1(27-35) Nonameric Peptide
pdb|3QFD|A Chain A, Human Class I Mhc Hla-A2 In Complex With Mart-1(27-35)
Nonameric Peptide
pdb|3QFD|D Chain D, Human Class I Mhc Hla-A2 In Complex With Mart-1(27-35)
Nonameric Peptide
pdb|3QFJ|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
pdb|3REW|A Chain A, Crystal Structure Of An Lmp2a-Derived Peptide Bound To
Human Class I Mhc Hla-A2
pdb|3REW|D Chain D, Crystal Structure Of An Lmp2a-Derived Peptide Bound To
Human Class I Mhc Hla-A2
pdb|3UTT|A Chain A, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3UTT|F Chain F, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3TO2|A Chain A, Structure Of Hla-A0201 Complexed With Peptide Md3-C9
Derived From A Clustering Region Of Restricted
Cytotoxic T Lymphocyte Epitope From Sars-Cov M Protein
pdb|4E5X|A Chain A, Crystal Structure Of A Complex Between The Human
Adenovirus Type 2 E3- 19k Protein And Mhc Class I
Molecule Hla-A2TAX
pdb|4E5X|D Chain D, Crystal Structure Of A Complex Between The Human
Adenovirus Type 2 E3- 19k Protein And Mhc Class I
Molecule Hla-A2TAX
pdb|3V5D|A Chain A, Hla-A2.1 Kvaelvhfl
pdb|3V5D|D Chain D, Hla-A2.1 Kvaelvhfl
pdb|3V5H|A Chain A, Hla-A2.1 Kvaeivhfl
pdb|3V5H|D Chain D, Hla-A2.1 Kvaeivhfl
pdb|3V5K|A Chain A, Hla2.1 Kvaelvwfl
pdb|3V5K|D Chain D, Hla2.1 Kvaelvwfl
Length = 275
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|3OX8|A Chain A, Crystal Structure Of Hla A02:03 Bound To Hbv Core 18-27
pdb|3OX8|D Chain D, Crystal Structure Of Hla A02:03 Bound To Hbv Core 18-27
Length = 275
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W E R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETR 65
>pdb|2HLA|A Chain A, Specificity Pockets For The Side Chains Of Peptide
Antigens In Hla-Aw68
pdb|1HSB|A Chain A, Different Length Peptides Bind To Hla-Aw68 Similarly At
Their Ends But Bulge Out In The Middle
Length = 270
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W + R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTR 65
>pdb|2X7M|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Methanopyrus Kandleri At 1.5 A Resolution
Length = 195
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 147 RLCILGFCRSIEMLSDVV---EDTVLEHGGEVVAAEKASK 183
+LC++ F I MLS +V E+ V E+ GEV +K +K
Sbjct: 22 KLCLVAFDGRIPMLSSIVDRFEEHVSEYLGEVKVKKKRAK 61
>pdb|1TMC|A Chain A, The Three-Dimensional Structure Of A Class I Major
Histocompatibility Complex Molecule Missing The Alpha3
Domain Of The Heavy Chain
Length = 175
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W + R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTR 65
>pdb|2AV1|A Chain A, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The E63q And K66a Mutations In
The Heavy Chain.
pdb|2AV1|D Chain D, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The E63q And K66a Mutations In
The Heavy Chain
Length = 275
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEERV 75
SVSR R F+ +V Y ++F+RF +DAAS PW E W + R
Sbjct: 11 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGQTRA 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,368,088
Number of Sequences: 62578
Number of extensions: 230770
Number of successful extensions: 767
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 48
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)