BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026986
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans
GN=unc-89 PE=1 SV=3
Length = 8081
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 163 VVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFL 199
++ DT LE GE VA K S G + V VPFL
Sbjct: 6209 IILDTTLEDAGEYVATAKNSHGSASSSAVLDVTVPFL 6245
>sp|P30443|1A01_HUMAN HLA class I histocompatibility antigen, A-1 alpha chain OS=Homo
sapiens GN=HLA-A PE=1 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETR 89
>sp|P30455|1A36_HUMAN HLA class I histocompatibility antigen, A-36 alpha chain OS=Homo
sapiens GN=HLA-A PE=2 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETR 89
>sp|P13748|1A03_PANTR Patr class I histocompatibility antigen, A-108 alpha chain OS=Pan
troglodytes GN=Patr-A PE=2 SV=2
Length = 365
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 89
>sp|P13746|1A11_HUMAN HLA class I histocompatibility antigen, A-11 alpha chain OS=Homo
sapiens GN=HLA-A PE=1 SV=1
Length = 365
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 89
>sp|P04439|1A03_HUMAN HLA class I histocompatibility antigen, A-3 alpha chain OS=Homo
sapiens GN=HLA-A PE=1 SV=2
Length = 365
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 89
>sp|Q319X7|COBQ_PROM9 Cobyric acid synthase OS=Prochlorococcus marinus (strain MIT 9312)
GN=cobQ PE=3 SV=1
Length = 509
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 150 ILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGL--------HEKLTMTVAVPFLW 200
I+G C ++ML +ED L+ G + + +K GL EKLT ++ LW
Sbjct: 339 IIGICGGLQMLGTFLEDPFLKEGSKTFSEQKIKGIGLLPLRTTFFEEKLTRQISSESLW 397
>sp|P30459|1A74_HUMAN HLA class I histocompatibility antigen, A-74 alpha chain OS=Homo
sapiens GN=HLA-A PE=2 SV=1
Length = 365
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 89
>sp|P10314|1A32_HUMAN HLA class I histocompatibility antigen, A-32 alpha chain OS=Homo
sapiens GN=HLA-A PE=2 SV=2
Length = 365
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETR 89
>sp|P16189|1A31_HUMAN HLA class I histocompatibility antigen, A-31 alpha chain OS=Homo
sapiens GN=HLA-A PE=2 SV=2
Length = 365
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPWAHSESGIEWVQEER 74
SVSR R F+ +V Y ++F+RF +DAAS PW E W QE R
Sbjct: 35 SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPWIEQERPEYWDQETR 89
>sp|P13749|1A04_PANTR Patr class I histocompatibility antigen, A-126 alpha chain OS=Pan
troglodytes GN=Patr-A PE=2 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 2 MTETCAFCFVSPYSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFN-FLPW 60
+T+T A Y S SVSR R F+ +V Y ++F+RF +DAAS PW
Sbjct: 19 LTQTWAGSHSMRYFST-SVSRPGRGEPRFI--AVGYVDDTQFVRFDSDAASQRMEPRAPW 75
Query: 61 AHSESGIEWVQEER 74
E W +E R
Sbjct: 76 IEQEGPEYWDEETR 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,357,494
Number of Sequences: 539616
Number of extensions: 2978959
Number of successful extensions: 7097
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7096
Number of HSP's gapped (non-prelim): 13
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)