Query 026986
Match_columns 230
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 03:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03142 GATase1_ThuA Type 1 gl 75.4 5.5 0.00012 34.5 4.7 63 158-220 22-92 (215)
2 cd00027 BRCT Breast Cancer Sup 52.3 21 0.00046 21.8 3.0 30 146-177 2-31 (72)
3 PF15143 DUF4575: Domain of un 49.7 7.6 0.00017 32.6 0.8 13 194-206 9-21 (130)
4 COG2360 Aat Leu/Phe-tRNA-prote 46.6 12 0.00025 33.9 1.5 57 19-82 5-61 (221)
5 PF07045 DUF1330: Protein of u 44.9 28 0.0006 24.2 2.9 21 158-178 5-25 (65)
6 smart00292 BRCT breast cancer 43.4 30 0.00066 21.6 2.7 31 145-177 5-35 (80)
7 smart00224 GGL G protein gamma 42.9 10 0.00022 27.1 0.5 11 195-205 39-49 (63)
8 cd01743 GATase1_Anthranilate_S 42.5 35 0.00077 27.1 3.6 48 148-204 72-119 (184)
9 PRK00194 hypothetical protein; 39.0 1.4E+02 0.003 21.1 6.4 62 147-214 3-66 (90)
10 smart00676 DM10 Domains in hyp 38.1 34 0.00074 26.5 2.8 28 60-87 11-38 (104)
11 PF12738 PTCB-BRCT: twin BRCT 36.7 35 0.00077 22.7 2.4 54 147-216 2-55 (63)
12 TIGR00667 aat leucyl/phenylala 36.0 26 0.00057 30.6 2.0 25 55-79 13-38 (185)
13 PF03799 FtsQ: Cell division p 34.3 29 0.00063 24.6 1.8 26 64-89 61-87 (117)
14 COG0761 lytB 4-Hydroxy-3-methy 33.1 37 0.00081 31.7 2.7 27 151-177 10-36 (294)
15 cd03330 Macro_2 Macro domain, 33.1 1.4E+02 0.0029 22.8 5.3 61 151-215 29-94 (133)
16 PF01250 Ribosomal_S6: Ribosom 32.9 52 0.0011 23.8 2.9 25 156-180 17-41 (92)
17 CHL00123 rps6 ribosomal protei 30.6 64 0.0014 24.5 3.2 25 156-180 22-46 (97)
18 PF06722 DUF1205: Protein of u 29.3 68 0.0015 24.6 3.1 38 144-182 39-84 (97)
19 cd01742 GATase1_GMP_Synthase T 29.2 70 0.0015 25.0 3.3 49 147-204 70-118 (181)
20 PF04790 Sarcoglycan_1: Sarcog 27.5 1.9E+02 0.0041 26.1 6.0 36 39-88 185-220 (264)
21 COG1212 KdsB CMP-2-keto-3-deox 26.5 48 0.001 30.5 2.2 25 161-185 52-76 (247)
22 PF02401 LYTB: LytB protein; 26.4 43 0.00093 30.3 1.8 68 151-221 7-91 (281)
23 PRK09004 FMN-binding protein M 26.1 93 0.002 24.6 3.5 30 145-178 82-119 (146)
24 PF00117 GATase: Glutamine ami 25.2 1E+02 0.0022 24.2 3.5 53 146-205 71-123 (192)
25 PRK00301 aat leucyl/phenylalan 24.3 56 0.0012 29.4 2.2 25 54-78 40-65 (233)
26 PF04991 LicD: LicD family; I 24.3 36 0.00078 26.8 0.8 10 56-65 23-32 (205)
27 TIGR00216 ispH_lytB (E)-4-hydr 24.2 63 0.0014 29.3 2.5 68 151-221 8-93 (280)
28 TIGR00166 S6 ribosomal protein 23.8 1E+02 0.0023 22.6 3.2 24 157-180 17-40 (93)
29 cd07222 Pat_PNPLA4 Patatin-lik 23.5 18 0.0004 30.8 -1.0 33 172-204 117-149 (246)
30 PRK12360 4-hydroxy-3-methylbut 23.5 68 0.0015 29.2 2.5 68 151-221 9-96 (281)
31 CHL00101 trpG anthranilate syn 22.7 95 0.002 25.3 3.0 27 146-179 71-97 (190)
32 KOG0023 Alcohol dehydrogenase, 22.4 2.4E+02 0.0051 27.4 5.9 85 126-220 162-276 (360)
33 PF00533 BRCT: BRCA1 C Terminu 22.3 82 0.0018 20.5 2.2 56 154-220 14-69 (78)
34 CHL00040 rbcL ribulose-1,5-bis 20.4 44 0.00094 32.6 0.7 70 128-199 34-106 (475)
No 1
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=75.40 E-value=5.5 Score=34.48 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHhhccCeEEEeehhh-ccCccee-e-EeeEeeee-ecc---CCC-chhHHHHHHHhCCcee
Q 026986 158 EMLSDVVEDTVLEHGGEVVAAEKAS-KGGLHEK-L-TMTVAVPF-LWG---VPP-ASETLHLAVQSGGGIV 220 (230)
Q Consensus 158 emLsdvVEDtVLe~GGEVv~aek~~-k~GlHEk-L-~MTVAvPl-LwG---VPP-a~E~L~~AirsGGGIV 220 (230)
+-+.+++.+-+.+.|=+|..+--+- ..||+|. | .-.|-|++ -|+ +++ +.+.|..+|++|||+|
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv 92 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLI 92 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEE
Confidence 3456777777778887776442222 2567776 6 45566664 455 555 6788999999999997
No 2
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=52.33 E-value=21 Score=21.79 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=21.5
Q ss_pred ceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 146 RRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 146 RRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
-++||.|+.. ..-.+.+++.+.++||.|..
T Consensus 2 ~~~~i~g~~~--~~~~~~l~~~i~~~Gg~v~~ 31 (72)
T cd00027 2 LTFVITGDLP--SEERDELKELIEKLGGKVTS 31 (72)
T ss_pred CEEEEEecCC--CcCHHHHHHHHHHcCCEEec
Confidence 4678888753 34446677888899998875
No 3
>PF15143 DUF4575: Domain of unknown function (DUF4575)
Probab=49.67 E-value=7.6 Score=32.60 Aligned_cols=13 Identities=54% Similarity=1.270 Sum_probs=10.9
Q ss_pred EeeeeeccCCCch
Q 026986 194 VAVPFLWGVPPAS 206 (230)
Q Consensus 194 VAvPlLwGVPPa~ 206 (230)
..||++|||||..
T Consensus 9 ~~~p~~~gvpp~~ 21 (130)
T PF15143_consen 9 LSVPASWGVPPPP 21 (130)
T ss_pred EeccccCCCCCCc
Confidence 5689999999854
No 4
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.58 E-value=12 Score=33.88 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=36.0
Q ss_pred cccccccCCCCceeeeccccCCCcceeccccccCCCCCcccCCCCCCCcceeecceEEEEeccc
Q 026986 19 SVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFNFLPWAHSESGIEWVQEERVTLFTADG 82 (230)
Q Consensus 19 s~~~~~~~~~~~~~~~~~~~~~~r~~rf~~~a~~d~~g~~pw~~~~~~i~wv~ee~iT~FTsdG 82 (230)
+.-+-.++||..+..+..+. ..|.++ --..|.|||.++++.|-|+.-|.=+++-.|.
T Consensus 5 ~~~~aL~~~~gl~~~~~dl~-~~~ll~------aY~~GiFPw~~~~~~~~W~spdpR~vi~~d~ 61 (221)
T COG2360 5 SPEYALREPNGLLALGGDLT-PDRLLA------AYAQGIFPWADDGDPLLWWSPDPRAVLPPDD 61 (221)
T ss_pred CHHHHhcCCCccccCCCCCC-HHHHHH------HHHcCccccccCCCceeEECCCCCeeecccc
Confidence 33334456666654443332 222221 1246899999999999999888777776666
No 5
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=44.90 E-value=28 Score=24.17 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHhhccCeEEEe
Q 026986 158 EMLSDVVEDTVLEHGGEVVAA 178 (230)
Q Consensus 158 emLsdvVEDtVLe~GGEVv~a 178 (230)
+--.+.|..++.++||+++..
T Consensus 5 ~~Y~~~~~~~l~~~GG~~l~~ 25 (65)
T PF07045_consen 5 QEYREAVPPILEKYGGRVLAR 25 (65)
T ss_dssp HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEE
Confidence 344677889999999999986
No 6
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=43.36 E-value=30 Score=21.64 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=23.3
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 145 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 145 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
|-++|+.| ....+-.+.++..+.++||.++.
T Consensus 5 g~~~~~~g--~~~~~~~~~l~~~i~~~Gg~~~~ 35 (80)
T smart00292 5 GKVFVITG--KFDKNERDELKELIEALGGKVTS 35 (80)
T ss_pred CeEEEEeC--CCCCccHHHHHHHHHHcCCEEec
Confidence 45677777 33456677889999999999885
No 7
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=42.86 E-value=10 Score=27.13 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=9.7
Q ss_pred eeeeeccCCCc
Q 026986 195 AVPFLWGVPPA 205 (230)
Q Consensus 195 AvPlLwGVPPa 205 (230)
..|||||+||.
T Consensus 39 ~DP~l~g~~~~ 49 (63)
T smart00224 39 EDPLLTGPPPS 49 (63)
T ss_pred CCCCcCCCCCC
Confidence 57999999986
No 8
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=42.51 E-value=35 Score=27.08 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=30.5
Q ss_pred eEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCC
Q 026986 148 LCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPP 204 (230)
Q Consensus 148 lci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPP 204 (230)
+-|+|.|+.-++|... +||+|.-......++.| .++++ .-|++.++|.
T Consensus 72 ~PvlGIC~G~Qlla~~-------~Gg~v~~~~~~~~g~~~-~v~~~-~~~~~~~~~~ 119 (184)
T cd01743 72 VPILGVCLGHQAIAEA-------FGGKVVRAPEPMHGKTS-EIHHD-GSGLFKGLPQ 119 (184)
T ss_pred CCEEEECHhHHHHHHH-------hCCEEEeCCCCCcCcee-EEEEC-CCccccCCCC
Confidence 7899999999999875 68888754433233323 33333 3456666653
No 9
>PRK00194 hypothetical protein; Validated
Probab=38.96 E-value=1.4e+02 Score=21.06 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=41.0
Q ss_pred eeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEe--eEeeeeeccCCCchhHHHHHHH
Q 026986 147 RLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTM--TVAVPFLWGVPPASETLHLAVQ 214 (230)
Q Consensus 147 Rlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~M--TVAvPlLwGVPPa~E~L~~Air 214 (230)
++.|.=+|..---+-.-|-+.+-+||+.|+..+....+ +.+.| .+-+| | .|...+.|+.+++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~---~~~~~~~~v~~~--~-~~~~~~~l~~~l~ 66 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMD---GYFTMIMLVDIS--E-SKKDFAELKEELE 66 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhC---CeeEEEEEEEec--C-CCCCHHHHHHHHH
Confidence 45555566666666667778889999999999988854 46666 44455 3 2333567765553
No 10
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=38.14 E-value=34 Score=26.51 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCCCCCcceeecceEEEEeccceEEeC
Q 026986 60 WAHSESGIEWVQEERVTLFTADGLVQIG 87 (230)
Q Consensus 60 w~~~~~~i~wv~ee~iT~FTsdGlVqIg 87 (230)
|+++..+-..++.=+|++|.+|+.|.|-
T Consensus 11 ~~d~~~~~~~~R~~~i~yyl~D~Tvei~ 38 (104)
T smart00676 11 WEDPVAMFYLIRRFKIYYYLEDDTIEVF 38 (104)
T ss_pred EecCCCCcCcEEEEEEEEECCCCeEEEE
Confidence 5555544467888899999999999985
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=36.69 E-value=35 Score=22.70 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=35.4
Q ss_pred eeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhC
Q 026986 147 RLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSG 216 (230)
Q Consensus 147 Rlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsG 216 (230)
++|+-||...- .+-++..+..+||.+.-. |-.+.|.-|+ --+..+..+.|.+-|
T Consensus 2 ~i~~sg~~~~~---~~~l~~~i~~~Gg~~~~~-------lt~~~THLI~------~~~~~~K~~~A~~~g 55 (63)
T PF12738_consen 2 VICFSGFSGKE---RSQLRKLIEALGGKYSKD-------LTKKTTHLIC------SSPEGKKYRKAKEWG 55 (63)
T ss_dssp EEEEEEB-TTT---CCHHHHHHHCTT-EEESS-------SSTT-SEEEE------ES--HHHHHHHHHCT
T ss_pred EEEECCCCHHH---HHHHHHHHHHCCCEEecc-------ccCCceEEEE------eCCCcHHHHHHHHCC
Confidence 68999988765 677888999999987532 2334555555 346778888888877
No 12
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=35.97 E-value=26 Score=30.61 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=18.0
Q ss_pred CCcccCCCCCCCcceeecc-eEEEEe
Q 026986 55 FNFLPWAHSESGIEWVQEE-RVTLFT 79 (230)
Q Consensus 55 ~g~~pw~~~~~~i~wv~ee-~iT~FT 79 (230)
-|.|||-++.+.|-|..-+ +-.++.
T Consensus 13 ~GiFPw~~~~~pi~WwsP~pR~vl~p 38 (185)
T TIGR00667 13 QGIFPWFDPGDPILWWSPDPRAVLWP 38 (185)
T ss_pred cCeecCCCCCCCeeEEcCCCCeEecc
Confidence 4899998888888886555 554443
No 13
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=34.32 E-value=29 Score=24.56 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=19.4
Q ss_pred CCCcceeecceEEEEeccce-EEeCCc
Q 026986 64 ESGIEWVQEERVTLFTADGL-VQIGGS 89 (230)
Q Consensus 64 ~~~i~wv~ee~iT~FTsdGl-VqIggs 89 (230)
-.+|.+-+...+++++.||. |.+|-+
T Consensus 61 i~~i~~~~~~~~~l~l~dg~~V~lg~~ 87 (117)
T PF03799_consen 61 ISEISYDPRGSWTLYLDDGVEVKLGRS 87 (117)
T ss_dssp -SEEEEETTSCEEEE-SSS-EEEEESS
T ss_pred eeEEEECCCCeEEEEECCCcEEEEcCc
Confidence 46889999999999999999 666653
No 14
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=33.11 E-value=37 Score=31.71 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=25.0
Q ss_pred eeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 151 LGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 151 ~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
.|||.-+++--..||-+..++|+.|..
T Consensus 10 rGFCaGV~RAI~ive~al~~~g~pIyv 36 (294)
T COG0761 10 RGFCAGVDRAIQIVERALEEYGAPIYV 36 (294)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCeEE
Confidence 599999999999999999999999765
No 15
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=33.05 E-value=1.4e+02 Score=22.76 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=38.0
Q ss_pred eeechhhhhhH-HHHHHHHhhcc----CeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHh
Q 026986 151 LGFCRSIEMLS-DVVEDTVLEHG----GEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQS 215 (230)
Q Consensus 151 ~GFCrSiemLs-dvVEDtVLe~G----GEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~Airs 215 (230)
-|.+..|.... ..+++...+.| |+++.. ..++|+=|..+.++-|--|+ ++.+|.|+.++++
T Consensus 29 ~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t---~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~ 94 (133)
T cd03330 29 GGVAGAIKRAGGSVIEREAVRKAPIPVGEAVIT---GAGDLPARYVIHAATMEEPG-RSSEESVRKATRA 94 (133)
T ss_pred CcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEE---eCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHH
Confidence 45666665544 34444444332 556543 23456666677777787788 8899999988764
No 16
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=32.89 E-value=52 Score=23.81 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHhhccCeEEEeeh
Q 026986 156 SIEMLSDVVEDTVLEHGGEVVAAEK 180 (230)
Q Consensus 156 SiemLsdvVEDtVLe~GGEVv~aek 180 (230)
.++.+.+-+.++|.+.||+|.-.|.
T Consensus 17 ~~~~~~~~~~~~i~~~gg~v~~~~~ 41 (92)
T PF01250_consen 17 EIKKLIERVKKIIEKNGGVVRSVEN 41 (92)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 3677888899999999999988775
No 17
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=30.58 E-value=64 Score=24.49 Aligned_cols=25 Identities=4% Similarity=0.141 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHHHhhccCeEEEeeh
Q 026986 156 SIEMLSDVVEDTVLEHGGEVVAAEK 180 (230)
Q Consensus 156 SiemLsdvVEDtVLe~GGEVv~aek 180 (230)
.++.+.+-+++.+.+.||+|+-.+.
T Consensus 22 ~~~~~~~~~~~~i~~~gg~i~~~~~ 46 (97)
T CHL00123 22 ELLKWIENYKKLLRKRGAKNISVQN 46 (97)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3667778889999999999988774
No 18
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=29.34 E-value=68 Score=24.62 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=24.6
Q ss_pred CCceeEE-eeechh-------hhhhHHHHHHHHhhccCeEEEeehhh
Q 026986 144 MGRRLCI-LGFCRS-------IEMLSDVVEDTVLEHGGEVVAAEKAS 182 (230)
Q Consensus 144 ~gRRlci-~GFCrS-------iemLsdvVEDtVLe~GGEVv~aek~~ 182 (230)
..+|||| +|.--. ...|.++++ ++.+++-|||++-.+.
T Consensus 39 ~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~-ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 39 GRPRVCVTLGTSVRMFFGPGGVPLLRRLLE-ALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEEEETHHHCHHHSCHHHCHHHHHHH-HHHTSSSEEEEEETTC
T ss_pred CCCEEEEEcCCCccccccccchHHHHHHHH-HHhhCCcEEEEECCHH
Confidence 4559998 554332 245555554 6778899999986543
No 19
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=29.20 E-value=70 Score=24.98 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=32.3
Q ss_pred eeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCC
Q 026986 147 RLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPP 204 (230)
Q Consensus 147 Rlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPP 204 (230)
..-|+|.|..-.+|... .||+|.-... ..-|.+++ +.+-.-|++-++|.
T Consensus 70 ~~PilGIC~G~Qll~~~-------~gg~v~~~~~-~~~G~~~v-~~~~~~~l~~~~~~ 118 (181)
T cd01742 70 GVPVLGICYGMQLIAKA-------LGGKVERGDK-REYGKAEI-EIDDSSPLFEGLPD 118 (181)
T ss_pred CCCEEEEcHHHHHHHHh-------cCCeEEeCCC-CcceEEEE-EecCCChhhcCCCC
Confidence 56799999999999874 6787765432 24455554 33445567777764
No 20
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=27.51 E-value=1.9e+02 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCCcceeccccccCCCCCcccCCCCCCCcceeecceEEEEeccceEEeCC
Q 026986 39 RSSRFLRFTADAASDSFNFLPWAHSESGIEWVQEERVTLFTADGLVQIGG 88 (230)
Q Consensus 39 ~~~r~~rf~~~a~~d~~g~~pw~~~~~~i~wv~ee~iT~FTsdGlVqIgg 88 (230)
+.++-.++.++|+ +|+|--...|.|=++||.+.+.|
T Consensus 185 ~a~egV~i~a~ag--------------~I~~~a~~di~L~S~~G~i~Lda 220 (264)
T PF04790_consen 185 RAPEGVHIEAKAG--------------DIEASARQDISLNSTDGSIVLDA 220 (264)
T ss_pred ECCCCeEEEeccC--------------cEEEEecCCEEEEecCCeEEEec
Confidence 4566666666665 89999999999999999999988
No 21
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.47 E-value=48 Score=30.49 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.8
Q ss_pred HHHHHHHHhhccCeEEEeehhhccC
Q 026986 161 SDVVEDTVLEHGGEVVAAEKASKGG 185 (230)
Q Consensus 161 sdvVEDtVLe~GGEVv~aek~~k~G 185 (230)
.+-|.+.|.++||||+++-+-..||
T Consensus 52 de~I~~av~~~G~~avmT~~~h~SG 76 (247)
T COG1212 52 DERIAEAVQAFGGEAVMTSKDHQSG 76 (247)
T ss_pred CHHHHHHHHHhCCEEEecCCCCCCc
Confidence 3567788899999999998887777
No 22
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=26.40 E-value=43 Score=30.30 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=41.6
Q ss_pred eeechhhhhhHHHHHHHHhhccCeEEEe----------ehhhccCcceeeE-------eeEeeeeeccCCCchhHHHHHH
Q 026986 151 LGFCRSIEMLSDVVEDTVLEHGGEVVAA----------EKASKGGLHEKLT-------MTVAVPFLWGVPPASETLHLAV 213 (230)
Q Consensus 151 ~GFCrSiemLsdvVEDtVLe~GGEVv~a----------ek~~k~GlHEkL~-------MTVAvPlLwGVPPa~E~L~~Ai 213 (230)
.|||.-++.--+.+++++.+.++.|... ++..+-|++-.=. =+|-++ -.||||+. +..|-
T Consensus 7 ~GfC~GV~rAi~~a~~~~~~~~~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~~~g~~Viir-AHGv~~~~--~~~l~ 83 (281)
T PF02401_consen 7 AGFCFGVKRAIEIAEEALEEYPGPVYTLGPIIHNPQVVERLEKRGVKVVDDIDEVPEGDTVIIR-AHGVPPEV--YEELK 83 (281)
T ss_dssp -SS-HHHHHHHHHHHHHCCCHSS-EEECS-SSS-HHHHHHHHHCTEEEESSGCGS-TTEEEEE--TT---HHH--HHHHH
T ss_pred CCcCccHHHHHHHHHHHHHhcCCCEEEecCcccCHHHHHHHHHCCCEEecCccccCCCCEEEEe-CCCCCHHH--HHHHH
Confidence 5999999999999999998888888753 5667777763222 133333 57999864 44555
Q ss_pred HhCCceeE
Q 026986 214 QSGGGIVE 221 (230)
Q Consensus 214 rsGGGIVe 221 (230)
+-|-=|||
T Consensus 84 ~~g~~viD 91 (281)
T PF02401_consen 84 ERGLEVID 91 (281)
T ss_dssp HTTEEEEE
T ss_pred HcCCEEEE
Confidence 55655655
No 23
>PRK09004 FMN-binding protein MioC; Provisional
Probab=26.13 E-value=93 Score=24.62 Aligned_cols=30 Identities=23% Similarity=0.604 Sum_probs=21.7
Q ss_pred CceeEEee--------echhhhhhHHHHHHHHhhccCeEEEe
Q 026986 145 GRRLCILG--------FCRSIEMLSDVVEDTVLEHGGEVVAA 178 (230)
Q Consensus 145 gRRlci~G--------FCrSiemLsdvVEDtVLe~GGEVv~a 178 (230)
+.|.+||| ||.-...|.+. +.++|++.+..
T Consensus 82 g~~~aVfGlGds~Y~~fc~~~~~ld~~----l~~lGa~~v~~ 119 (146)
T PRK09004 82 QVRFAAIGIGSSEYDTFCGAIDKLEQL----LKAKGAKQIGE 119 (146)
T ss_pred CCEEEEEeecCCCHHHHhHHHHHHHHH----HHHcCCeEeec
Confidence 67999999 67777665544 45688887754
No 24
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=25.17 E-value=1e+02 Score=24.19 Aligned_cols=53 Identities=28% Similarity=0.571 Sum_probs=34.2
Q ss_pred ceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCc
Q 026986 146 RRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPA 205 (230)
Q Consensus 146 RRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa 205 (230)
+++-|+|.|..-.+|. .+.||+|.-.++.--.|-...++.+-.-|++-|.|..
T Consensus 71 ~~~PilGIC~G~Q~la-------~~~G~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 123 (192)
T PF00117_consen 71 RKIPILGICLGHQILA-------HALGGKVVPSPEKPHHGGNIPISETPEDPLFYGLPES 123 (192)
T ss_dssp TTSEEEEETHHHHHHH-------HHTTHEEEEEESEEEEEEEEEEEEEEEHGGGTTSTSE
T ss_pred cceEEEEEeehhhhhH-------HhcCCcccccccccccccccccccccccccccccccc
Confidence 5667999999988875 4678888855533333333333333334888888764
No 25
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=24.35 E-value=56 Score=29.44 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=17.3
Q ss_pred CCCcccCCCCCCCcceee-cceEEEE
Q 026986 54 SFNFLPWAHSESGIEWVQ-EERVTLF 78 (230)
Q Consensus 54 ~~g~~pw~~~~~~i~wv~-ee~iT~F 78 (230)
.-|.|||-++++.|-|.. +.|-.+.
T Consensus 40 ~~GiFPw~~~~~pi~WwsP~pR~Vl~ 65 (233)
T PRK00301 40 AQGIFPWFSDGQPILWWSPDPRAVLP 65 (233)
T ss_pred hcCcccCCCCCCCceEEcCCCCEEec
Confidence 358999999887887764 4444433
No 26
>PF04991 LicD: LicD family; InterPro: IPR007074 The LicD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent []. Fukutin, which is a member of the LicD family, is a human protein which may be involved in the modification of glycan moieties of alpha-dystroglycan; defects in Fukutin are associated with congential muscular dystrophy [].
Probab=24.31 E-value=36 Score=26.79 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=8.6
Q ss_pred CcccCCCCCC
Q 026986 56 NFLPWAHSES 65 (230)
Q Consensus 56 g~~pw~~~~~ 65 (230)
||.|||++-|
T Consensus 23 gfIPWDDDiD 32 (205)
T PF04991_consen 23 GFIPWDDDID 32 (205)
T ss_pred CCCCCCCccc
Confidence 8999999874
No 27
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=24.17 E-value=63 Score=29.32 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=44.6
Q ss_pred eeechhhhhhHHHHHHHHhhccCeEEEe----------ehhhccCc-c--ee---e--EeeEeeeeeccCCCchhHHHHH
Q 026986 151 LGFCRSIEMLSDVVEDTVLEHGGEVVAA----------EKASKGGL-H--EK---L--TMTVAVPFLWGVPPASETLHLA 212 (230)
Q Consensus 151 ~GFCrSiemLsdvVEDtVLe~GGEVv~a----------ek~~k~Gl-H--Ek---L--~MTVAvPlLwGVPPa~E~L~~A 212 (230)
.|||.-++.--+.+|++..+.|+.|.+. ++..+-|+ . |. + .=+|-++ --||||+. ...|
T Consensus 8 ~GFC~GV~rAi~~a~~~~~~~~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~Viir-AHGv~~~~--~~~~ 84 (280)
T TIGR00216 8 RGFCFGVKRAIQMAEEALKESGKPVYTLGPIVHNPQVVERLRERGVFFFLEDLDEVAAGDTVIIR-AHGVPPEV--REEL 84 (280)
T ss_pred CCCCccHHHHHHHHHHHHhhcCCCeEEecCCccCHHHHHHHHHCCCEEeecCcccCCCCCEEEEe-CCCCCHHH--HHHH
Confidence 5999999998899999877778877654 35556664 2 11 1 1144444 47999964 4555
Q ss_pred HHhCCceeE
Q 026986 213 VQSGGGIVE 221 (230)
Q Consensus 213 irsGGGIVe 221 (230)
-+-|-=|||
T Consensus 85 ~~~gl~viD 93 (280)
T TIGR00216 85 EKKGLEVID 93 (280)
T ss_pred HHCCCeEEe
Confidence 556655665
No 28
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=23.82 E-value=1e+02 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHhhccCeEEEeeh
Q 026986 157 IEMLSDVVEDTVLEHGGEVVAAEK 180 (230)
Q Consensus 157 iemLsdvVEDtVLe~GGEVv~aek 180 (230)
++.+-+-+++.+.+.||+|.-.|.
T Consensus 17 ~~~~~~~~~~~i~~~gg~i~~~~~ 40 (93)
T TIGR00166 17 VKGQIERYKKVITLNGAEIVRSED 40 (93)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEe
Confidence 456677788899999999988774
No 29
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=23.52 E-value=18 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.7
Q ss_pred cCeEEEeehhhccCcceeeEeeEeeeeeccCCC
Q 026986 172 GGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPP 204 (230)
Q Consensus 172 GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPP 204 (230)
|-+|+..+-.+++.|.+.+.-+-|+|.+.|.||
T Consensus 117 g~~v~~~~f~s~~~L~~av~AS~aiP~~~g~~p 149 (246)
T cd07222 117 RKNYLVSNFTSREDLIKVLLASCYVPVYAGLKP 149 (246)
T ss_pred CCeEEEeccCCcchHHHHHHHhhcCccccCCCC
Confidence 334444455566778888888899999888766
No 30
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=23.47 E-value=68 Score=29.16 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=45.5
Q ss_pred eeechhhhhhHHHHHHHHhhc-cCeEEEe----------ehhhccCccee--e-------EeeEeeeeeccCCCchhHHH
Q 026986 151 LGFCRSIEMLSDVVEDTVLEH-GGEVVAA----------EKASKGGLHEK--L-------TMTVAVPFLWGVPPASETLH 210 (230)
Q Consensus 151 ~GFCrSiemLsdvVEDtVLe~-GGEVv~a----------ek~~k~GlHEk--L-------~MTVAvPlLwGVPPa~E~L~ 210 (230)
.|||.-++.--+.+++++.+. |+.|.+. ++..+-|++-. = .=+|-++ --||||+. ++
T Consensus 9 ~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~Viir-AHGv~~~~--~~ 85 (281)
T PRK12360 9 AGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIR-SHGVSKKV--YK 85 (281)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEe-CCCCCHHH--HH
Confidence 599999999889999987665 8888654 36667777543 1 1134343 47999964 45
Q ss_pred HHHHhCCceeE
Q 026986 211 LAVQSGGGIVE 221 (230)
Q Consensus 211 ~AirsGGGIVe 221 (230)
.|-+-|=-|||
T Consensus 86 ~~~~~g~~viD 96 (281)
T PRK12360 86 DLKDKGLEIID 96 (281)
T ss_pred HHHHCCCeEEe
Confidence 55556656665
No 31
>CHL00101 trpG anthranilate synthase component 2
Probab=22.74 E-value=95 Score=25.26 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred ceeEEeeechhhhhhHHHHHHHHhhccCeEEEee
Q 026986 146 RRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAE 179 (230)
Q Consensus 146 RRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ae 179 (230)
+++-|+|.|+--.+|.. ..||+|.-..
T Consensus 71 ~~~PiLGIClG~Qlla~-------~~Gg~V~~~~ 97 (190)
T CHL00101 71 PYIPILGVCLGHQSIGY-------LFGGKIIKAP 97 (190)
T ss_pred CCCcEEEEchhHHHHHH-------HhCCEEEECC
Confidence 45779999999999876 4788886544
No 32
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.36 E-value=2.4e+02 Score=27.41 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=60.5
Q ss_pred Cceeccee-eeeeeccCCCCCceeEEeeechhhhhh------------------HHHHHHHHhhccCeEEEeeh------
Q 026986 126 QRLCLGAL-FDIAATNGLDMGRRLCILGFCRSIEML------------------SDVVEDTVLEHGGEVVAAEK------ 180 (230)
Q Consensus 126 QgLClGA~-F~IAATNGlD~gRRlci~GFCrSiemL------------------sdvVEDtVLe~GGEVv~aek------ 180 (230)
-=||-|-. +.=-.-+|+.+|.+++|.|.+- +-.+ +.-=||++..+|+|+++.-.
T Consensus 162 PlLCaGITvYspLk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~ 240 (360)
T KOG0023|consen 162 PLLCAGITVYSPLKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIM 240 (360)
T ss_pred chhhcceEEeehhHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHH
Confidence 36899964 5555679999999999999986 3222 11348888889999987654
Q ss_pred -----hhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCcee
Q 026986 181 -----ASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIV 220 (230)
Q Consensus 181 -----~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIV 220 (230)
++..|.|=+..+ ..-++|-+-..+|.+|=+|
T Consensus 241 ~~~~~~~dg~~~~v~~~---------a~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 241 KAIMKTTDGGIDTVSNL---------AEHALEPLLGLLKVNGTLV 276 (360)
T ss_pred HHHHHhhcCcceeeeec---------cccchHHHHHHhhcCCEEE
Confidence 566777765544 4456677777777777655
No 33
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=22.34 E-value=82 Score=20.53 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=31.7
Q ss_pred chhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCcee
Q 026986 154 CRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIV 220 (230)
Q Consensus 154 CrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIV 220 (230)
+...++-.+-++..+..+||.|. ..+-++.|.-|+-.. ......+..|...|-=||
T Consensus 14 ~~~~~~~~~~l~~~i~~~GG~v~-------~~~~~~~thvI~~~~----~~~~~k~~~~~~~~i~iV 69 (78)
T PF00533_consen 14 SGFDSDEREELEQLIKKHGGTVS-------NSFSKKTTHVIVGNP----NKRTKKYKAAIANGIPIV 69 (78)
T ss_dssp SSTSSSHHHHHHHHHHHTTEEEE-------SSSSTTSSEEEESSS----HCCCHHHHHHHHTTSEEE
T ss_pred ccCCCCCHHHHHHHHHHcCCEEE-------eecccCcEEEEeCCC----CCccHHHHHHHHCCCeEe
Confidence 44455556777999999999992 222333333332111 245556667776665554
No 34
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=20.36 E-value=44 Score=32.61 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=53.1
Q ss_pred eecceeeeeeeccCCCCCceeEEeeechhhhhhHHHHHHH---HhhccCeEEEeehhhccCcceeeEeeEeeeee
Q 026986 128 LCLGALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDT---VLEHGGEVVAAEKASKGGLHEKLTMTVAVPFL 199 (230)
Q Consensus 128 LClGA~F~IAATNGlD~gRRlci~GFCrSiemLsdvVEDt---VLe~GGEVv~aek~~k~GlHEkL~MTVAvPlL 199 (230)
=-+=|.|.|....|.|+.++-..+--=+|++.--+|+.|+ ...+.|+|+..+..-.. .+.-.+++|-|+-
T Consensus 34 ~~i~atY~i~~~~g~~~~~~A~~iA~EqStGTw~~v~~~~~~~~~~~~arV~~i~~~~~~--~~~~~v~IayP~~ 106 (475)
T CHL00040 34 TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYRIEPVPGE--ENQYIAYVAYPLD 106 (475)
T ss_pred cEEEEEEEEeCCCCCCHHHHHHHHHhhcccCcCcCCCCCcHhHHhhhceEEEEEEecCCC--CceEEEEEEEchH
Confidence 3567899999999999987766665668999998886644 45679999988764322 2567899999974
Done!