Query 026986
Match_columns 230
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 04:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lcc_A AT-rich interactive dom 45.8 7 0.00024 28.0 1.1 23 59-83 47-69 (76)
2 3r5g_A CYAB; adenylyl cyclase, 45.6 49 0.0017 24.8 5.9 36 157-205 36-71 (198)
3 2lrq_A Protein MRG15, NUA4 com 47.0 5.7 0.0002 29.0 0.0 23 59-83 50-72 (85)
4 3al2_A DNA topoisomerase 2-bin 35.9 13 0.00043 30.5 1.3 20 203-222 147-166 (235)
5 2f5k_A MORF-related gene 15 is 35.3 7.1 0.00024 29.8 -0.3 23 59-83 60-82 (102)
6 2a25_A Ubiquitin ligase SIAH1; 34.2 58 0.002 25.9 4.9 54 133-196 133-190 (193)
7 3msh_A Hepatitis B virus X-int 34.0 12 0.0004 28.8 0.7 13 124-136 25-37 (99)
8 4id3_A DNA repair protein REV1 31.9 37 0.0013 22.4 2.9 30 145-177 10-39 (92)
9 2k3y_A Chromatin modification- 29.1 9.9 0.00034 30.5 -0.4 23 59-83 85-107 (136)
10 2cxa_A Leucyl/phenylalanyl-tRN 28.4 31 0.0011 30.3 2.6 27 55-81 61-87 (256)
11 3l3e_A DNA topoisomerase 2-bin 28.3 59 0.002 22.8 3.6 63 144-219 17-79 (107)
12 2ebw_A DNA repair protein REV1 26.9 46 0.0016 22.6 2.7 30 145-177 15-44 (97)
13 3m9q_A Protein MALE-specific l 26.8 15 0.00052 28.0 0.3 23 58-82 66-88 (101)
14 1wc3_A Adenylate cyclase; solu 26.3 1.4E+02 0.0048 23.2 5.8 34 159-205 56-89 (219)
15 1wgs_A MYST histone acetyltran 26.1 26 0.00087 27.3 1.5 20 59-81 53-72 (133)
16 4fpp_A Phosphotransferase; fou 25.6 78 0.0027 24.6 4.2 29 163-197 218-246 (247)
17 1u8s_A Glycine cleavage system 24.2 1.8E+02 0.0063 21.9 6.0 64 144-214 3-67 (192)
18 3l46_A Protein ECT2; alternati 24.1 58 0.002 24.3 3.1 28 147-177 26-53 (112)
19 3m9p_A MALE-specific lethal 3 23.3 17 0.00059 28.3 -0.0 24 58-83 66-89 (110)
20 1wf6_A Similar to S.pombe -RAD 23.1 70 0.0024 23.5 3.3 67 144-227 42-108 (132)
21 2nte_A BARD-1, BRCA1-associate 22.1 65 0.0022 24.7 3.1 35 184-221 102-136 (210)
22 4e5v_A Putative THUA-like prot 22.1 1E+02 0.0035 25.8 4.6 76 144-220 4-90 (281)
23 2d8m_A DNA-repair protein XRCC 21.5 2.2E+02 0.0074 20.7 5.7 59 146-220 26-84 (129)
24 3fyb_A Protein of unknown func 20.7 30 0.001 27.2 0.8 25 149-175 38-62 (104)
25 2dhx_A Poly (ADP-ribose) polym 20.4 40 0.0014 26.0 1.5 27 199-225 13-45 (104)
26 3dnf_A ISPH, LYTB, 4-hydroxy-3 20.2 53 0.0018 29.0 2.4 68 151-221 10-93 (297)
27 3boe_A Cadmium-specific carbon 20.1 59 0.002 28.1 2.6 22 201-222 118-142 (210)
No 1
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=45.75 E-value=7 Score=27.99 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=18.6
Q ss_pred cCCCCCCCcceeecceEEEEeccce
Q 026986 59 PWAHSESGIEWVQEERVTLFTADGL 83 (230)
Q Consensus 59 pw~~~~~~i~wv~ee~iT~FTsdGl 83 (230)
-|+..+| |||++++|-+.+...+
T Consensus 47 gwnkr~D--EWV~~~ri~~~~~~~~ 69 (76)
T 2lcc_A 47 GWNVRYD--EWVKADRIIWPLDKGL 69 (76)
T ss_dssp TSCCSSC--EEEEGGGEECSSCSSC
T ss_pred CcCCCce--EecChhhccccccchh
Confidence 5888886 9999999988776554
No 2
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=45.65 E-value=49 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCc
Q 026986 157 IEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPA 205 (230)
Q Consensus 157 iemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa 205 (230)
++.+.+.+.+.|.+|||.|+-.. ++ ++=.+||.|..
T Consensus 36 l~~~~~~~~~~i~~~~G~v~k~~----GD---------~~~a~fg~p~~ 71 (198)
T 3r5g_A 36 LNNYLNEMSKIALKYGGTIDKFV----GD---------CVMVFFGDPST 71 (198)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE----TT---------EEEEEESSSSC
T ss_pred HHHHHHHHHHHHHHcCCEEEeee----CC---------EEEEEECCCcc
Confidence 45567788899999999987552 22 44567999986
No 3
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=47.00 E-value=5.7 Score=29.04 Aligned_cols=23 Identities=35% Similarity=0.780 Sum_probs=19.8
Q ss_pred cCCCCCCCcceeecceEEEEeccce
Q 026986 59 PWAHSESGIEWVQEERVTLFTADGL 83 (230)
Q Consensus 59 pw~~~~~~i~wv~ee~iT~FTsdGl 83 (230)
-|+..+| |||++++|--+|.+.+
T Consensus 50 GwNkR~D--EWV~~~Rl~k~t~en~ 72 (85)
T 2lrq_A 50 GWSKNWD--EWVPENRVLKYNDDNV 72 (85)
Confidence 5888886 9999999999998775
No 4
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=35.89 E-value=13 Score=30.46 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=17.5
Q ss_pred CCchhHHHHHHHhCCceeEE
Q 026986 203 PPASETLHLAVQSGGGIVEK 222 (230)
Q Consensus 203 PPa~E~L~~AirsGGGIVeK 222 (230)
+|..+.|...|++|||+|-+
T Consensus 147 ~~~~~~l~~ii~agGg~vl~ 166 (235)
T 3al2_A 147 QSREAGFKRLLQSGGAKVLP 166 (235)
T ss_dssp HHHHHHHHHHHHHTTCEECS
T ss_pred CCcHHHHHHHHHcCCcEEec
Confidence 57788999999999999954
No 5
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=35.26 E-value=7.1 Score=29.79 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=19.3
Q ss_pred cCCCCCCCcceeecceEEEEeccce
Q 026986 59 PWAHSESGIEWVQEERVTLFTADGL 83 (230)
Q Consensus 59 pw~~~~~~i~wv~ee~iT~FTsdGl 83 (230)
-|...+| |||++++|--+|.+.+
T Consensus 60 GwNkR~D--EWV~~~Rl~k~t~en~ 82 (102)
T 2f5k_A 60 GWNKNWD--EWVPESRVLKYVDTNL 82 (102)
T ss_dssp TSCGGGC--EEEEGGGEEESSHHHH
T ss_pred CcCCCce--eeccHhhcccCCHHHH
Confidence 5888886 9999999998887764
No 6
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=34.15 E-value=58 Score=25.92 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=34.8
Q ss_pred eeeeeeccCCCCCceeEEeeechhh-hhhHHHHHHHHhhccCeEEEeehhh---ccCcceeeEeeEee
Q 026986 133 LFDIAATNGLDMGRRLCILGFCRSI-EMLSDVVEDTVLEHGGEVVAAEKAS---KGGLHEKLTMTVAV 196 (230)
Q Consensus 133 ~F~IAATNGlD~gRRlci~GFCrSi-emLsdvVEDtVLe~GGEVv~aek~~---k~GlHEkL~MTVAv 196 (230)
.++|.++. .+|||-..++|+|+ |.+.++. .+ +.=+++.-... -+| ++|+|.|.|
T Consensus 133 ~Y~l~~~~---~~r~L~~~~~~~s~~e~~~~~~----~~-~d~L~ip~~~~~~f~~~--~~L~l~v~I 190 (193)
T 2a25_A 133 AYRLELNG---HRRRLTWEATPRSIHEGIATAI----MN-SDCLVFDTSIAQLFAEN--GNLGINVTI 190 (193)
T ss_dssp EEEEEEEE---TTEEEEEEECCEETTTCSHHHH----HT-TCSEEEEHHHHHHHCSS--SEEEEEEEE
T ss_pred EEEEEEEc---CCCEEEEEEEEEehhhcccccc----cC-CCEEEEcHHHHHhhcCC--CeEEEEEEE
Confidence 67888874 58999999999998 6666533 22 33333333322 122 578888876
No 7
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=34.02 E-value=12 Score=28.83 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=9.7
Q ss_pred CCCceecceeeee
Q 026986 124 PNQRLCLGALFDI 136 (230)
Q Consensus 124 p~QgLClGA~F~I 136 (230)
+.||||||+-=++
T Consensus 25 D~qGLcLg~~G~~ 37 (99)
T 3msh_A 25 DSQGLNLGCRGTL 37 (99)
T ss_dssp CTTCCEEEEEETC
T ss_pred CCCCCcccccCCC
Confidence 4699999985443
No 8
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=31.87 E-value=37 Score=22.45 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=20.2
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 145 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 145 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
|-++||-|+... -.+-++..|.++||.+.-
T Consensus 10 g~~~~i~g~~~~---~~~~l~~~i~~~GG~~~~ 39 (92)
T 4id3_A 10 NCVIYINGYTKP---GRLQLHEMIVLHGGKFLH 39 (92)
T ss_dssp TCEEEECSCCSS---CHHHHHHHHHHTTCEEES
T ss_pred CEEEEEeCCCCc---CHHHHHHHHHHCCCEEEE
Confidence 556777775422 134577888999999873
No 9
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=29.10 E-value=9.9 Score=30.45 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=20.2
Q ss_pred cCCCCCCCcceeecceEEEEeccce
Q 026986 59 PWAHSESGIEWVQEERVTLFTADGL 83 (230)
Q Consensus 59 pw~~~~~~i~wv~ee~iT~FTsdGl 83 (230)
-|...+| |||++++|--+|.+.+
T Consensus 85 GWn~rwD--EWV~~dRil~~~eeN~ 107 (136)
T 2k3y_A 85 GWKSSWD--EWVGYDRIRAYNEENI 107 (136)
T ss_dssp TSCGGGC--EEEETTTEEESCHHHH
T ss_pred CcCCcce--eeecHhhhhhCCHhHh
Confidence 4888887 9999999999998875
No 10
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=28.37 E-value=31 Score=30.32 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=18.6
Q ss_pred CCcccCCCCCCCcceeecceEEEEecc
Q 026986 55 FNFLPWAHSESGIEWVQEERVTLFTAD 81 (230)
Q Consensus 55 ~g~~pw~~~~~~i~wv~ee~iT~FTsd 81 (230)
-|.|||.++++.|-|..-+.=.++--|
T Consensus 61 ~GiFPw~~~~~pilWwsP~pR~Vl~p~ 87 (256)
T 2cxa_A 61 RGIFPWFSPGDPILWWSPDPRAVLWPE 87 (256)
T ss_dssp HTCEECCCTTSCCEEECCSSEEEECGG
T ss_pred cCcccCCCCCCccceECCCCCEEeccc
Confidence 489999988888888765544333333
No 11
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=28.28 E-value=59 Score=22.77 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCce
Q 026986 144 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGI 219 (230)
Q Consensus 144 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGI 219 (230)
-|-.+||-|+.. +-.+-+++.+..+||.|.- .+-.+.|--|+-. ..-+....++.|.+.|-=|
T Consensus 17 ~g~~i~isg~~~---~~r~~l~~li~~~Gg~v~~-------~~s~~~THlI~~~---~~~~~~~K~~~A~~~gi~I 79 (107)
T 3l3e_A 17 HKVVVCVSKKLS---KKQSELNGIAASLGADYRR-------SFDETVTHFIYQG---RPNDTNREYKSVKERGVHI 79 (107)
T ss_dssp TTCEEEECGGGG---GGHHHHHHHHHHTTCEEES-------SCCTTCCEEECCC---CTTCCCHHHHHHHHTTCEE
T ss_pred CCeEEEEeCCCh---HhHHHHHHHHHHcCCEEec-------cccCCceEEEecC---CCCCCCHHHHHHHHCCCeE
Confidence 356778888764 4456778889999999853 2334444444421 1223346778888854333
No 12
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=26.92 E-value=46 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=18.9
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 145 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 145 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
|-++||-|+-. .-.+-++..|.++||.+..
T Consensus 15 g~~~~isg~~~---~~~~~L~~~i~~~GG~~~~ 44 (97)
T 2ebw_A 15 GVAIYVNGYTD---PSAEELRKLMMLHGGQYHV 44 (97)
T ss_dssp TCEEEECSSCS---SCHHHHHHHHHHTTCEECS
T ss_pred CeEEEEeCCCc---ccHHHHHHHHHHcCCEEee
Confidence 44556555421 1246678889999999753
No 13
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=26.75 E-value=15 Score=27.99 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=18.2
Q ss_pred ccCCCCCCCcceeecceEEEEeccc
Q 026986 58 LPWAHSESGIEWVQEERVTLFTADG 82 (230)
Q Consensus 58 ~pw~~~~~~i~wv~ee~iT~FTsdG 82 (230)
--|...+| |||++++|-=+|.+.
T Consensus 66 ~GWn~rwD--EWV~edRilk~~eeN 88 (101)
T 3m9q_A 66 QGWRPSYD--RAVRATVLLKDTEEN 88 (101)
T ss_dssp TTSCGGGC--EEECGGGEEECCHHH
T ss_pred CCCCcCce--eecCHHHcccCCHHH
Confidence 35999887 999999987766543
No 14
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=26.34 E-value=1.4e+02 Score=23.22 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCc
Q 026986 159 MLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPA 205 (230)
Q Consensus 159 mLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa 205 (230)
.+.+.+.+.|.+|||.|.-. -++ ++=.+||.|..
T Consensus 56 ~~~~~~~~~i~~~gG~v~k~----iGD---------~~ma~fg~p~~ 89 (219)
T 1wc3_A 56 EYLGEMTRAVFENQGTVDKF----VGD---------AIMALYGAPEE 89 (219)
T ss_dssp HHHHHHHHHHHHTTCEEEEE----ETT---------EEEEEESSSSC
T ss_pred HHHHHHHHHHHHcCCEEEEE----EcC---------eEEEEECCCCC
Confidence 34566788899999998742 122 45567999964
No 15
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=26.12 E-value=26 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=15.8
Q ss_pred cCCCCCCCcceeecceEEEEecc
Q 026986 59 PWAHSESGIEWVQEERVTLFTAD 81 (230)
Q Consensus 59 pw~~~~~~i~wv~ee~iT~FTsd 81 (230)
-|+..+| |||++++|. |+..
T Consensus 53 gwNkR~D--EWV~~~ri~-~~~~ 72 (133)
T 1wgs_A 53 GFNRRLD--EWVDKNRLA-LTKT 72 (133)
T ss_dssp TTCSSCC--EEECTTTSC-CTTT
T ss_pred CcCCCce--eecChhhcc-cccc
Confidence 4888887 999999995 4554
No 16
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=25.64 E-value=78 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=21.3
Q ss_pred HHHHHHhhccCeEEEeehhhccCcceeeEeeEeee
Q 026986 163 VVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVP 197 (230)
Q Consensus 163 vVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvP 197 (230)
+|..-|..|||+|-+. +..| -.++||-+|
T Consensus 218 i~~~iv~~hGG~i~v~---s~~~---G~~f~v~LP 246 (247)
T 4fpp_A 218 YLNALVRAAGGQIAVE---IGED---RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHTTCEEEEE---EETT---EEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEE---EcCC---EEEEEEEec
Confidence 5677789999999864 2233 578888887
No 17
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=24.24 E-value=1.8e+02 Score=21.90 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCC-CchhHHHHHHH
Q 026986 144 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVP-PASETLHLAVQ 214 (230)
Q Consensus 144 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVP-Pa~E~L~~Air 214 (230)
|..++-|.=+|..---|...|-..+.++|+.|+.+.-.. ....+.|++-|- .| ...+.|+.++.
T Consensus 3 m~~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~---~~~~f~~~~~v~----~~~~~~~~l~~~L~ 67 (192)
T 1u8s_A 3 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM---FGKEFTLLMLIS----GSPSNITRVETTLP 67 (192)
T ss_dssp CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE---ETTEEEEEEEEE----ECHHHHHHHHHHHH
T ss_pred CCcEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee---cCCceEEEEEEe----cCCCCHHHHHHHHH
Confidence 455677777888777888888899999999999877665 345566665543 22 25667776665
No 18
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=24.13 E-value=58 Score=24.30 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=21.9
Q ss_pred eeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 147 RLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 147 Rlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
+||+-||-. .| ..-+++.|.++||++..
T Consensus 26 ~Ic~sGf~~-~e--r~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 26 ILSFLGFSD-EE--KTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp EECEESCCH-HH--HHHHHHHHHHTTCEECC
T ss_pred EEEEeCCCH-HH--HHHHHHHHHHcCCEECc
Confidence 889999874 23 45688999999999863
No 19
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=23.28 E-value=17 Score=28.28 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.2
Q ss_pred ccCCCCCCCcceeecceEEEEeccce
Q 026986 58 LPWAHSESGIEWVQEERVTLFTADGL 83 (230)
Q Consensus 58 ~pw~~~~~~i~wv~ee~iT~FTsdGl 83 (230)
--|...+| +||++++|-=+|.+.+
T Consensus 66 ~GWn~~wD--EWV~e~rllk~~eeN~ 89 (110)
T 3m9p_A 66 NGWNRSWD--RWAAEDHVLRDTDENR 89 (110)
T ss_dssp TTSCGGGC--EEEEGGGEEECCHHHH
T ss_pred CCCCcchh--hccCHhhhhcCCHHHH
Confidence 35988887 9999999987776654
No 20
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=23.13 E-value=70 Score=23.51 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=38.8
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCceeEEE
Q 026986 144 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIVEKV 223 (230)
Q Consensus 144 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIVeKv 223 (230)
-|-+++|-||. +.-.+.++..+..+||+|+. -+-+..|=-|+-- | ...++.+++...+.+.=|
T Consensus 42 ~g~~i~i~G~~---~~~~~~L~~~i~~~Gg~v~~-------~l~~~vTHvI~~~-----~--~~~~~~~~~~~~~~~~iV 104 (132)
T 1wf6_A 42 DGCRIYLCGFS---GRKLDKLRRLINSGGGVRFN-------QLNEDVTHVIVGD-----Y--DDELKQFWNKSAHRPHVV 104 (132)
T ss_dssp TTCEEEEESCC---SHHHHHHHHHHHHTTCEEES-------SCCSSCCEEEESS-----C--CSHHHHHHHHSCCCCCEE
T ss_pred CCEEEEEECCC---hHHHHHHHHHHHHCCCEEeC-------cCCCCCeEEEECC-----c--hHHHHHHHHhhCCCCeEe
Confidence 36688888883 23346678888999999964 2334555444421 2 235666666543333334
Q ss_pred EEee
Q 026986 224 YWQW 227 (230)
Q Consensus 224 y~qW 227 (230)
.-||
T Consensus 105 ~~~W 108 (132)
T 1wf6_A 105 GAKW 108 (132)
T ss_dssp EHHH
T ss_pred chHH
Confidence 4455
No 21
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=22.12 E-value=65 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=23.9
Q ss_pred cCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCceeE
Q 026986 184 GGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIVE 221 (230)
Q Consensus 184 ~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIVe 221 (230)
.+|.+-++.-+.-++ .+|..+.|..-|+.|||.|-
T Consensus 102 ~~lF~g~~~~l~~~~---~~~~~~~l~~lI~~~GG~v~ 136 (210)
T 2nte_A 102 PKLFDGCYFYLWGTF---KHHPKDNLIKLVTAGGGQIL 136 (210)
T ss_dssp CCTTTTCEEEECSCC---SSSCHHHHHHHHHHTTCEEE
T ss_pred ccccCceEEEEeccC---CCCCHHHHHHHHHHCCCEEE
Confidence 456665554332222 45788999999999999764
No 22
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=22.06 E-value=1e+02 Score=25.84 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=45.0
Q ss_pred CCceeEEeeec-hhhhhhHHHHHHHHhhcc-CeEEEeehhh----ccCcceeeE-eeEeeeeecc--C--CCchhHHHHH
Q 026986 144 MGRRLCILGFC-RSIEMLSDVVEDTVLEHG-GEVVAAEKAS----KGGLHEKLT-MTVAVPFLWG--V--PPASETLHLA 212 (230)
Q Consensus 144 ~gRRlci~GFC-rSiemLsdvVEDtVLe~G-GEVv~aek~~----k~GlHEkL~-MTVAvPlLwG--V--PPa~E~L~~A 212 (230)
+-|=|.|-|-| -.++.-.+.+.+...+.| =+|..++-.. .+.+.|+|. .-|-| +-+. + +.+.+.|...
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV-~~~~~~~l~~~~~~~l~~y 82 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVV-LDYNGDSWPEETNRRFLEY 82 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEE-ECCCSSCCCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEE-EeCCCCcCCHHHHHHHHHH
Confidence 33445555543 346777777877777777 3777776421 123334442 22333 3332 2 3456788999
Q ss_pred HHhCCcee
Q 026986 213 VQSGGGIV 220 (230)
Q Consensus 213 irsGGGIV 220 (230)
|+.|||+|
T Consensus 83 V~~Ggglv 90 (281)
T 4e5v_A 83 VQNGGGVV 90 (281)
T ss_dssp HHTTCEEE
T ss_pred HHcCCCEE
Confidence 99999987
No 23
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.52 E-value=2.2e+02 Score=20.73 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=34.6
Q ss_pred ceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCcee
Q 026986 146 RRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIV 220 (230)
Q Consensus 146 RRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIV 220 (230)
-.+||-|+- .+-.+-+++.+.++||.|.- .+..+.|.-||- .+....+..|.+-|-=||
T Consensus 26 ~~i~itG~~---~~~r~~l~~~i~~~Gg~v~~-------~~s~~~ThLI~~------~~~~~K~~~A~~~gi~IV 84 (129)
T 2d8m_A 26 VVVVLSGFQ---NPFRSELRDKALELGAKYRP-------DWTRDSTHLICA------FANTPKYSQVLGLGGRIV 84 (129)
T ss_dssp EEEEEESCC---TTHHHHHHHHHHHTTEEEES-------SCCTTCCEEEES------SSSCHHHHHHHHHTCEEE
T ss_pred eEEEEeCCC---cHHHHHHHHHHHHcCCEEeC-------CcCCCCeEEEec------CCCChHHHHHHHCCCcEe
Confidence 345555654 23456778889999999853 233344544443 234566778888654333
No 24
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.68 E-value=30 Score=27.23 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEeeechhhhhhHHHHHHHHhhccCeE
Q 026986 149 CILGFCRSIEMLSDVVEDTVLEHGGEV 175 (230)
Q Consensus 149 ci~GFCrSiemLsdvVEDtVLe~GGEV 175 (230)
.+.||||. =||+-..++..+.|.++
T Consensus 38 nLAGFCRN--CLskWy~~aA~~~G~~~ 62 (104)
T 3fyb_A 38 IQADFCRN--CLAKWLMEAATEQGVEL 62 (104)
T ss_dssp HHHSCCHH--HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHcCCcC
Confidence 46799995 69999999999999765
No 25
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.40 E-value=40 Score=26.04 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=18.3
Q ss_pred eccCCCchh--HHHHH----HHhCCceeEEEEE
Q 026986 199 LWGVPPASE--TLHLA----VQSGGGIVEKVYW 225 (230)
Q Consensus 199 LwGVPPa~E--~L~~A----irsGGGIVeKvy~ 225 (230)
..|+||+.. .|.+- -|+|||.|+.|..
T Consensus 13 V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 13 VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred EECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 468888754 33332 3589999999864
No 26
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=20.16 E-value=53 Score=29.02 Aligned_cols=68 Identities=24% Similarity=0.464 Sum_probs=42.0
Q ss_pred eeechhhhhhHHHHHHHHhhccCeEEEe----------ehhhccCcc----eeeE-e-eEeeeeeccCCCchhHHHHHHH
Q 026986 151 LGFCRSIEMLSDVVEDTVLEHGGEVVAA----------EKASKGGLH----EKLT-M-TVAVPFLWGVPPASETLHLAVQ 214 (230)
Q Consensus 151 ~GFCrSiemLsdvVEDtVLe~GGEVv~a----------ek~~k~GlH----EkL~-M-TVAvPlLwGVPPa~E~L~~Air 214 (230)
.|||.-++.--+.||+++.+.|+.|... +++.+-|+. +.+. = +|-++ -.||||+.. ..|-+
T Consensus 10 ~GFC~GV~RAI~~a~~al~~~~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~~ev~~g~~VIir-AHGv~~~v~--~~a~~ 86 (297)
T 3dnf_A 10 AGFCFGVKRAVKLAEESLKESQGKVYTLGPIIHNPQEVNRLKNLGVFPSQGEEFKEGDTVIIR-SHGIPPEKE--EALRK 86 (297)
T ss_dssp CSSCHHHHHHHHHHHHHTTTCCSCEEESSCSSSCHHHHHHHHHHTEEECCSSCCCTTCEEEEC-TTCCCHHHH--HHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhcCCCEEEeCCcccCHHHHHHHHhCCCEEechhhCCCCCEEEEE-CCCCCHHHH--HHHHH
Confidence 5999999999999999887777766542 333444543 1111 1 23332 479999753 55555
Q ss_pred hCCceeE
Q 026986 215 SGGGIVE 221 (230)
Q Consensus 215 sGGGIVe 221 (230)
-|==|||
T Consensus 87 rgl~iiD 93 (297)
T 3dnf_A 87 KGLKVID 93 (297)
T ss_dssp TTCEEEE
T ss_pred CCCEEEe
Confidence 5655554
No 27
>3boe_A Cadmium-specific carbonic anhydrase; marine diatom, cadmium-bound, acetate LI lyase; 1.40A {Thalassiosira weissflogii} SCOP: c.154.1.1 PDB: 3boc_A 3bob_A 3boj_A 3boh_A
Probab=20.05 E-value=59 Score=28.06 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.1
Q ss_pred cCC-Cch--hHHHHHHHhCCceeEE
Q 026986 201 GVP-PAS--ETLHLAVQSGGGIVEK 222 (230)
Q Consensus 201 GVP-Pa~--E~L~~AirsGGGIVeK 222 (230)
|+| |.+ |.=-.||+++||+||-
T Consensus 118 g~p~P~f~AdqGa~~V~~~GGvvE~ 142 (210)
T 3boe_A 118 GYPRPQFDADQGANAVKDAGGIIEM 142 (210)
T ss_dssp TCCCCSSCHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCChhHhHHHHHhcCCEEEe
Confidence 899 876 4556899999999984
Done!