Query 026986
Match_columns 230
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 04:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026986.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026986hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jfga1 c.5.1.1 (A:1-93) UDP-N 77.9 2.9 0.00021 27.3 5.9 67 145-218 5-90 (93)
2 d1rcua_ c.129.1.1 (A:) Hypothe 65.0 2.1 0.00016 31.7 3.1 33 146-178 2-65 (170)
3 d2cxaa1 d.108.1.6 (A:1-232) Le 37.2 8.6 0.00063 31.2 2.6 28 55-82 44-71 (232)
4 d2h1ia1 c.69.1.14 (A:1-202) Ca 33.7 42 0.003 22.4 5.4 90 133-223 83-178 (202)
5 d1t0ba_ c.23.16.6 (A:) GK2113 31.6 19 0.0014 27.2 3.7 73 147-220 4-96 (240)
6 d1j27a_ d.58.50.1 (A:) Hypothe 29.7 32 0.0023 24.1 4.4 69 97-182 17-93 (98)
7 d2csua3 c.23.4.1 (A:291-453) A 27.8 26 0.0019 24.2 3.6 68 144-214 2-71 (163)
8 d2fcra_ c.23.5.1 (A:) Flavodox 27.3 26 0.0019 25.5 3.6 30 144-177 83-122 (173)
9 d1yoba1 c.23.5.1 (A:1-179) Fla 26.6 26 0.0019 25.8 3.5 29 145-177 88-126 (179)
10 d1ysra1 d.122.1.3 (A:299-446) 26.1 39 0.0028 23.3 4.3 31 163-198 116-146 (148)
11 d1cdza_ c.15.1.1 (A:) DNA-repa 25.9 24 0.0018 22.0 2.8 59 145-219 8-67 (96)
12 d1l7ba_ c.15.1.2 (A:) NAD+-dep 24.3 19 0.0014 24.4 2.2 31 144-177 9-39 (92)
13 d2je8a1 b.1.4.1 (A:220-330) Be 24.0 6.4 0.00046 26.0 -0.4 55 170-225 45-107 (111)
14 d1i58a_ d.122.1.3 (A:) Histidi 23.4 49 0.0036 21.5 4.2 32 162-198 157-188 (189)
15 d2j5aa1 d.58.14.1 (A:3-108) Ri 22.9 29 0.0021 23.4 3.0 25 156-180 22-46 (106)
16 d1f4pa_ c.23.5.1 (A:) Flavodox 22.5 31 0.0023 23.7 3.1 29 145-177 84-120 (147)
17 d1loua_ d.58.14.1 (A:) Ribosom 21.6 38 0.0027 22.4 3.3 25 157-181 19-43 (97)
18 d1vqol1 c.12.1.1 (L:1-150) Rib 21.1 22 0.0016 24.9 2.1 36 143-183 113-148 (150)
19 d1zzka1 d.51.1.1 (A:11-85) HnR 20.9 62 0.0045 19.8 4.1 41 131-171 34-74 (75)
No 1
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=77.91 E-value=2.9 Score=27.27 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=45.5
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhc--------cCcc-----------eeeEeeEeeeeeccCCCc
Q 026986 145 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASK--------GGLH-----------EKLTMTVAVPFLWGVPPA 205 (230)
Q Consensus 145 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k--------~GlH-----------EkL~MTVAvPlLwGVPPa 205 (230)
++|+.|+|+..|=- .+-....++|.+|...+...+ .+.. ..+.+-|.=| ||||.
T Consensus 5 ~K~v~ViGlG~sG~----s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP---Gi~~~ 77 (93)
T d2jfga1 5 GKNVVIIGLGLTGL----SCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP---GIALA 77 (93)
T ss_dssp TCCEEEECCSHHHH----HHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT---TSCTT
T ss_pred CCEEEEEeECHHHH----HHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC---CCCCC
Confidence 68999999998832 234677888999988665222 2111 1223444455 89999
Q ss_pred hhHHHHHHHhCCc
Q 026986 206 SETLHLAVQSGGG 218 (230)
Q Consensus 206 ~E~L~~AirsGGG 218 (230)
-+.+..|.+-|==
T Consensus 78 ~~~~~~a~~~gi~ 90 (93)
T d2jfga1 78 HPSLSAAADAGIE 90 (93)
T ss_dssp SHHHHHHHHTTCE
T ss_pred CHHHHHHHHcCCC
Confidence 9999999987643
No 2
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=64.99 E-value=2.1 Score=31.70 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=24.3
Q ss_pred ceeEEeeechhhh-----hhHH--------------------------HHHHHHhhccCeEEEe
Q 026986 146 RRLCILGFCRSIE-----MLSD--------------------------VVEDTVLEHGGEVVAA 178 (230)
Q Consensus 146 RRlci~GFCrSie-----mLsd--------------------------vVEDtVLe~GGEVv~a 178 (230)
||+|+||+|+|.. .+.| .|-+.+.++||.|+-.
T Consensus 2 k~v~v~~~~~~~~~~p~~~~~~~a~~lG~~la~~g~~V~~GG~~GlM~ava~ga~~~gg~viGi 65 (170)
T d1rcua_ 2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREAGGTVVGI 65 (170)
T ss_dssp CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEEEecCCCCCcchHHHHHHHHHHHHHHHCCCEEECCCccCHHHHHHHHHHhcCCccccc
Confidence 7899999996643 2333 4678889999998754
No 3
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=37.24 E-value=8.6 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=19.9
Q ss_pred CCcccCCCCCCCcceeecceEEEEeccc
Q 026986 55 FNFLPWAHSESGIEWVQEERVTLFTADG 82 (230)
Q Consensus 55 ~g~~pw~~~~~~i~wv~ee~iT~FTsdG 82 (230)
-|.|||.++++.|-|..-+.=.++--|+
T Consensus 44 ~GiFPw~~~~~~i~WwsP~~R~vl~~~~ 71 (232)
T d2cxaa1 44 RGIFPWFSPGDPILWWSPDPRAVLWPES 71 (232)
T ss_dssp HTCEECCCTTSCCEEECCSSEEEECGGG
T ss_pred cCCccCCcCCCCeEEEecCCCEEECCCC
Confidence 3899999999999988655444443343
No 4
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}
Probab=33.73 E-value=42 Score=22.36 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=45.5
Q ss_pred eeeeeeccCCCCCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeecc-----CCCc-h
Q 026986 133 LFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWG-----VPPA-S 206 (230)
Q Consensus 133 ~F~IAATNGlD~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwG-----VPPa-~ 206 (230)
+-.+.+..++|+ .|+.+.|||..--+-......--..-++-+.........-....-.-...+-++.| |||+ .
T Consensus 83 i~~~~~~~~~d~-~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~D~~vp~~~~ 161 (202)
T d2h1ia1 83 LDEAAKEYKFDR-NNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLANLAGKSVFIAAGTNDPICSSAES 161 (202)
T ss_dssp HHHHHHHTTCCT-TCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSSCCCCCCTTCEEEEEEESSCSSSCHHHH
T ss_pred HHHHHHhccccc-cceeeecccccchHHHHHHHhccccccceeeecCCCCcccccccccccchhhcccccCCCccCHHHH
Confidence 334455667776 57779999987655444332222222333333222111112222222223334556 5654 4
Q ss_pred hHHHHHHHhCCceeEEE
Q 026986 207 ETLHLAVQSGGGIVEKV 223 (230)
Q Consensus 207 E~L~~AirsGGGIVeKv 223 (230)
+.+..+.+.-|.-|+.+
T Consensus 162 ~~~~~~l~~~g~~~~~~ 178 (202)
T d2h1ia1 162 EELKVLLENANANVTMH 178 (202)
T ss_dssp HHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 67888888888765543
No 5
>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=31.57 E-value=19 Score=27.16 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=41.5
Q ss_pred eeEEeeechhh-----------hhhHHHHHHHHhhccCeEEEee-hhhccCcc-eeeEeeEeeeeec---c---CC-Cch
Q 026986 147 RLCILGFCRSI-----------EMLSDVVEDTVLEHGGEVVAAE-KASKGGLH-EKLTMTVAVPFLW---G---VP-PAS 206 (230)
Q Consensus 147 Rlci~GFCrSi-----------emLsdvVEDtVLe~GGEVv~ae-k~~k~GlH-EkL~MTVAvPlLw---G---VP-Pa~ 206 (230)
||-|+|=||.- +-+-..+.+.+.+.|-+|..+. .....++. |.|.=.=+| ++| + ++ .+.
T Consensus 4 rvlv~~~~~He~~~~~v~~i~p~g~~~~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~~~Dvl-i~~~~~~~~~l~~~q~ 82 (240)
T d1t0ba_ 4 RVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVL-VWWGHIAHDEVKDEVV 82 (240)
T ss_dssp EEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEE-EEECSSCGGGSCHHHH
T ss_pred EEEEECCccccccchhhhhhCcccHHHHHHHHhhcCCceEEEEEecCccccCCHHHHhcCCEE-EEeCCCCCCcCCHHHH
Confidence 57788877763 2222455566667788887642 22223332 333222222 233 2 22 347
Q ss_pred hHHHHHHHhCCcee
Q 026986 207 ETLHLAVQSGGGIV 220 (230)
Q Consensus 207 E~L~~AirsGGGIV 220 (230)
+.|...|++|||+|
T Consensus 83 ~al~~~v~~G~G~V 96 (240)
T d1t0ba_ 83 ERVHRRVLEGMGLI 96 (240)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCEE
Confidence 88999999999998
No 6
>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus thermophilus [TaxId: 274]}
Probab=29.72 E-value=32 Score=24.14 Aligned_cols=69 Identities=25% Similarity=0.273 Sum_probs=44.0
Q ss_pred CCcchhhccccccchhhh-hhhcccCCCCCCceecceeeeeeeccCCCCCceeEEeeec------hhhhhhHHHHHHHHh
Q 026986 97 SSTSDKKQGRSKSSQRFQ-RFQESDYMDPNQRLCLGALFDIAATNGLDMGRRLCILGFC------RSIEMLSDVVEDTVL 169 (230)
Q Consensus 97 ~~~s~kk~~~~k~~~~~q-r~qe~~ymdp~QgLClGA~F~IAATNGlD~gRRlci~GFC------rSiemLsdvVEDtVL 169 (230)
+|-.+|++--+...+|++ ||. ..||-+...|.-.|.-| ||+ ..+|..-+-|++-+.
T Consensus 17 ~SLKeKR~vvksl~~rlr~rfN----------------VSvaEv~~qD~~q~a~i-gia~vs~~~~~~~~~l~~i~~~ie 79 (98)
T d1j27a_ 17 RSLKEKRALIKPALERLKARFP----------------VSAARLYGLDAWGYEVV-GFTLLGNDPAWVEETMRAAARFLA 79 (98)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSS----------------CEEEEEECTTCSSEEEE-EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CChHHhHHHHHHHHHHHhhcCC----------------EEEEEecCCCcceEEEE-EEEEEECCHHHHHHHHHHHHHHHH
Confidence 344566665555556666 454 35667777777776432 333 456777777888888
Q ss_pred hccC-eEEEeehhh
Q 026986 170 EHGG-EVVAAEKAS 182 (230)
Q Consensus 170 e~GG-EVv~aek~~ 182 (230)
+.++ ||+..+...
T Consensus 80 ~~~~~ev~~~~~ei 93 (98)
T d1j27a_ 80 EAGGFQVALEEFRL 93 (98)
T ss_dssp HSCSSEEEEEEEEE
T ss_pred hCCCceEEEEEEEE
Confidence 8755 999887653
No 7
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=27.75 E-value=26 Score=24.19 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeE--eeEeeeeeccCCCchhHHHHHHH
Q 026986 144 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLT--MTVAVPFLWGVPPASETLHLAVQ 214 (230)
Q Consensus 144 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~--MTVAvPlLwGVPPa~E~L~~Air 214 (230)
.|+||+|++---..-.| .-|.+.++|-++-.-..+++.-|.|.|- .++.-|+-.+-.-..|....+++
T Consensus 2 ~G~rvaiit~sGG~~~l---~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~ 71 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVL---TADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAK 71 (163)
T ss_dssp SSSEEEEEESCHHHHHH---HHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECChHHHHH---HHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHH
Confidence 38999999877665544 5688899999998888888888888774 34555774433333455555544
No 8
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=27.28 E-value=26 Score=25.50 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=21.9
Q ss_pred CCceeEEee----------echhhhhhHHHHHHHHhhccCeEEE
Q 026986 144 MGRRLCILG----------FCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 144 ~gRRlci~G----------FCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
.+++++||| ||..+.+|.+ .+.+.|+.+|-
T Consensus 83 ~gk~~avFGlGD~~~y~~~F~~a~~~l~~----~l~~~GA~~IG 122 (173)
T d2fcra_ 83 KDLPVAIFGLGDAEGYPDNFCDAIEEIHD----CFAKQGAKPVG 122 (173)
T ss_dssp TTCEEEEEEEECTTTCTTSTTTHHHHHHH----HHHHTTCEEEC
T ss_pred CCCeEEEEEecCCCcchhhHHHHHHHHHH----HHHhCCCEEec
Confidence 377899999 6666666655 45678999884
No 9
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=26.59 E-value=26 Score=25.80 Aligned_cols=29 Identities=17% Similarity=0.535 Sum_probs=22.5
Q ss_pred CceeEEee----------echhhhhhHHHHHHHHhhccCeEEE
Q 026986 145 GRRLCILG----------FCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 145 gRRlci~G----------FCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
+++++||| ||..+.+|.+. +.++|++++-
T Consensus 88 g~~~avfGlGDs~~~~~~Fc~a~~~l~~~----l~~~GA~~iG 126 (179)
T d1yoba1 88 GKTVALFGLGDQVGYPENYLDALGELYSF----FKDRGAKIVG 126 (179)
T ss_dssp TCEEEEEEECCTTTCTTTTTHHHHHHHHH----HHTTTCEEEC
T ss_pred CcEEEEEEecCCcccchhHHHHHHHHHHH----HHhCCCeEee
Confidence 67888888 88888887665 4578999873
No 10
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.13 E-value=39 Score=23.34 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHHHhhccCeEEEeehhhccCcceeeEeeEeeee
Q 026986 163 VVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPF 198 (230)
Q Consensus 163 vVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPl 198 (230)
+|..-|..|||++-+.... .. -.++++.+|+
T Consensus 116 i~~~iv~~hgG~i~~~s~~-~~----Gt~f~i~lP~ 146 (148)
T d1ysra1 116 LVAQQAQLHGGTASLENSP-LG----GARLVLRLPG 146 (148)
T ss_dssp HHHHHHHHTTCEEEEEECT-TS----SEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEcC-CC----eEEEEEEEEc
Confidence 4666788999999875443 22 3588888996
No 11
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.86 E-value=24 Score=21.97 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=33.8
Q ss_pred CceeEEee-echhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCce
Q 026986 145 GRRLCILG-FCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGI 219 (230)
Q Consensus 145 gRRlci~G-FCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGI 219 (230)
|.++||.| |= -+. .+-++..|.++||.|... +.++-|--|+- .+..+..+.+..-.++|
T Consensus 8 g~~f~v~g~~~--~~~-~~~l~~~i~~~GG~v~~~-------~~~~~THvI~~------~~~~~~~~~~~~~~~~i 67 (96)
T d1cdza_ 8 GKHFFLYGEFP--GDE-RRKLIRYVTAFNGELEDY-------MSDRVQFVITA------QEWDPSFEEALMDNPSL 67 (96)
T ss_dssp TCEEEECSCCC--THH-HHHHHHHHHHTTCEECSS-------CSTTCSEEECS------SCCCHHHHHHHTTCTTC
T ss_pred CcEEEEeCCCC--HHH-HHHHHHHHHHhCCEEecc-------CCCCceEEEEc------cCCcceeeehhhhCCCC
Confidence 66788877 42 111 234577999999998532 33444444432 24445566666655554
No 12
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}
Probab=24.26 E-value=19 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 026986 144 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 144 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
-|.++|+-|+- + |=.+-+++.+.++||.|.-
T Consensus 9 ~G~~iv~TG~~-~--~~R~e~~~~i~~~Gg~v~~ 39 (92)
T d1l7ba_ 9 KGLTFVITGEL-S--RPREEVKALLRRLGAKVTD 39 (92)
T ss_dssp TTCEEECSTTT-T--SCHHHHHHHHHHTTCEEES
T ss_pred CCCEEEEeCCc-c--CCHHHHHHHHHHhCCEEcC
Confidence 38899999985 3 4467889999999999864
No 13
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=24.02 E-value=6.4 Score=25.96 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=35.8
Q ss_pred hccCeEEEeehh--hccCcce-eeEeeEeeeeec---c--CCCchhHHHHHHHhCCceeEEEEE
Q 026986 170 EHGGEVVAAEKA--SKGGLHE-KLTMTVAVPFLW---G--VPPASETLHLAVQSGGGIVEKVYW 225 (230)
Q Consensus 170 e~GGEVv~aek~--~k~GlHE-kL~MTVAvPlLw---G--VPPa~E~L~~AirsGGGIVeKvy~ 225 (230)
..|+++...++. .+.|.++ .+.++|.=|-|| | =|+ +=+++..++.+|..+|....
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~p~LW~P~g~g~P~-LY~~~v~l~~~g~~~D~~~~ 107 (111)
T d2je8a1 45 LNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPT-LYDFSAQIACGDRIVAEQSH 107 (111)
T ss_dssp ETTEEEEEEEEEEEECSEEEEEEEEEEEESCCCBCCTTSSCBC-CEEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEEEEEEEEecccccEEEEEEEeCCccCcCCCCCCCCc-eEEEEEEEEECCEEEEEEEE
Confidence 345666555542 3344433 356788889999 4 444 55677788889999988754
No 14
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=23.42 E-value=49 Score=21.48 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=23.6
Q ss_pred HHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeee
Q 026986 162 DVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPF 198 (230)
Q Consensus 162 dvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPl 198 (230)
.+|..-|..|||+|-+.-. ..+=-+.++-+|+
T Consensus 157 ai~k~ive~hgG~I~v~S~-----~g~GT~f~i~lPl 188 (189)
T d1i58a_ 157 DVVKNVVESLNGSISIESE-----KDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHHHHHTTCEEEEEEE-----TTTEEEEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEec-----CCCCEEEEEEEeC
Confidence 5677888999999877532 2245788888886
No 15
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]}
Probab=22.86 E-value=29 Score=23.43 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHhhccCeEEEeeh
Q 026986 156 SIEMLSDVVEDTVLEHGGEVVAAEK 180 (230)
Q Consensus 156 SiemLsdvVEDtVLe~GGEVv~aek 180 (230)
.++-+-+-|++.+.+.||+|+..+.
T Consensus 22 ~~~~~~~~~~~~i~~~gg~i~~~~~ 46 (106)
T d2j5aa1 22 EMKKKFEQVKEFIKQKGGEILYEED 46 (106)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3667778889999999999998874
No 16
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=22.46 E-value=31 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.772 Sum_probs=20.8
Q ss_pred CceeEEee--------echhhhhhHHHHHHHHhhccCeEEE
Q 026986 145 GRRLCILG--------FCRSIEMLSDVVEDTVLEHGGEVVA 177 (230)
Q Consensus 145 gRRlci~G--------FCrSiemLsdvVEDtVLe~GGEVv~ 177 (230)
+++++||| ||+.+..|.+. ..++|++++.
T Consensus 84 ~~~~avfGlGds~y~~f~~a~~~l~~~----l~~lGa~~v~ 120 (147)
T d1f4pa_ 84 GRKVACFGCGDSSWEYFCGAVDAIEEK----LKNLGAEIVQ 120 (147)
T ss_dssp TCEEEEEEEECTTSSSTTHHHHHHHHH----HHHTTCEECS
T ss_pred CCcEEEEecCCccHHHHhHHHHHHHHH----HHhCCCEEee
Confidence 56888888 58888777554 4567888764
No 17
>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]}
Probab=21.58 E-value=38 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHhhccCeEEEeehh
Q 026986 157 IEMLSDVVEDTVLEHGGEVVAAEKA 181 (230)
Q Consensus 157 iemLsdvVEDtVLe~GGEVv~aek~ 181 (230)
++.+-+-+++.+.++||+|+..|..
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~e~~ 43 (97)
T d1loua_ 19 LALEKEIIQRAAENYGARVEKVEEL 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeee
Confidence 4556677888999999999988753
No 18
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.09 E-value=22 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhc
Q 026986 143 DMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASK 183 (230)
Q Consensus 143 D~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k 183 (230)
|...-|-| .+...|+.-.+.|+..||+|.+.|.+.+
T Consensus 113 ~l~~~l~I-----ka~~~S~sA~ekIe~aGG~v~l~~~~~~ 148 (150)
T d1vqol1 113 QVRHELTL-----IADDFSEGAREKVEGAGGSVELTDLGEE 148 (150)
T ss_dssp CCCSCCEE-----EESEECHHHHHHHHHTTCEEEECSTTCC
T ss_pred ccCcCEEE-----EEEEcCHHHHHHHHHcCCEEEEeechhc
Confidence 34445555 3456678889999999999999988754
No 19
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.95 E-value=62 Score=19.83 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=31.6
Q ss_pred ceeeeeeeccCCCCCceeEEeeechhhhhhHHHHHHHHhhc
Q 026986 131 GALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEH 171 (230)
Q Consensus 131 GA~F~IAATNGlD~gRRlci~GFCrSiemLsdvVEDtVLe~ 171 (230)
||-..|...+.-+..|.+.|.|-..+++.-.+.+++-|.|+
T Consensus 34 ga~I~i~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~e~ 74 (75)
T d1zzka1 34 GASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 74 (75)
T ss_dssp CCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEccCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 66666665555566788899999999988888888887764
Done!