BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026987
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
+EIRHY + W+STS ++ + A +TGF +L YIQGKNE E I+MTAPV + V P
Sbjct: 41 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 99
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
GPF ES+ T+S Y+P Q +PP + I+ VR F GF S E+
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 159
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
L AS+ + EK Y A YNSP + NR NE+WL+
Sbjct: 160 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 198
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
+EIRHY + W+STS ++ + A +TGF +L YIQGKNE E I+MTAPV + V P
Sbjct: 60 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG 118
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
GPF ES+ T+S Y+P Q +PP + I+ VR F GF S E+
Sbjct: 119 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 178
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
L AS+ + EK Y A YNSP + NR NE+WL+
Sbjct: 179 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 217
>pdb|4AYZ|A Chain A, X-Ray Structure Of Human Soul
Length = 208
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
+EIRHY + W+STS ++ A +TGF +L YIQGKNE E I+ TAPV + V P
Sbjct: 41 YEIRHYGPAKWVSTS-VESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
GPF ES+ T+S Y+P Q +PP + I+ VR F GF S E+
Sbjct: 100 SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLL 159
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
L AS+ + EK Y A YNSP + NR NE+WL+
Sbjct: 160 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 198
>pdb|4AYZ|B Chain B, X-Ray Structure Of Human Soul
Length = 208
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPS 115
+EIRHY + W+STS ++ A +TGF +L YIQGKNE E I+ TAPV + V P
Sbjct: 41 YEIRHYGPAKWVSTS-VESXDWDSAIQTGFTKLNSYIQGKNEKEXKIKXTAPVTSYVEPG 99
Query: 116 DGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
GPF S+ T+S Y+P Q +PP + I+ VR F GF S E+
Sbjct: 100 SGPFESSTITISLYIPSEQQFDPPRPLESDVFIEDRAEXTVFVRSFDGFSSAQKNQEQLL 159
Query: 174 ALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
L AS+ + EK Y A YNSP + NR NE+WL+
Sbjct: 160 TL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 198
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 68 STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
+T + D + +A R ++ Y+ G N+ + MT PV V P++ + V
Sbjct: 44 ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 103
Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
F +P Q +PP + + I++ + QF G+ +++ A L+ +L GT
Sbjct: 104 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 161
Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
A Y A Y+ P + Y R NE+WL+
Sbjct: 162 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 190
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 68 STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
+T + D + +A R ++ Y+ G N+ + MT PV V P++ + V
Sbjct: 47 ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
F +P Q +PP + + I++ + QF G+ +++ A L+ +L GT
Sbjct: 107 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 164
Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
A Y A Y+ P + Y R NE+WL+
Sbjct: 165 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 193
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 68 STSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVS 127
+T + D + +A R ++ Y+ G N+ + MT PV V P++ + V
Sbjct: 47 ATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVW 106
Query: 128 FYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWA 185
F +P Q +PP + + I++ + QF G+ +++ A L+ +L GT
Sbjct: 107 FRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP-- 164
Query: 186 AAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221
A Y A Y+ P + Y R NE+WL+
Sbjct: 165 -------ATYQGDVYYCAGYDPPMKPYGRRNEVWLV 193
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 52 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 84
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 33 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 65
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 31 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 63
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 41 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 73
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 41 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 73
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 41 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 73
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHI 146
PS PF E YV +V++ P GL I
Sbjct: 42 PSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQI 74
>pdb|1BDH|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1QP7|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1QQA|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1QQB|A Chain A, Purine Repressor Mutant-hypoxanthine-palindromic Operator
Complex
Length = 340
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|1VPW|A Chain A, Structure Of The Purr Mutant, L54m, Bound To Hypoxanthine
And Purf Operator Dna
Length = 340
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|2PUA|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUB|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUC|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUD|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
Length = 340
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|1PNR|A Chain A, Purine Repressor-Hypoxanthine-Purf-Operator Complex
pdb|1BDI|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic Operator
Complex
pdb|1WET|A Chain A, Structure Of The Purr-Guanine-Purf Operator Complex
pdb|1QP0|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator Complex
pdb|1QP4|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator Complex
pdb|1QPZ|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator Complex
pdb|1ZAY|A Chain A, Purine Repressor-hypoxanthine-modified-purf-operator
Complex
Length = 340
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|1JH9|A Chain A, Purine Repressor Mutant-Hypoxanthine-Purf Operator Complex
Length = 340
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|1JFT|A Chain A, Purine Repressor Mutant-hypoxanthine-purf Operator Complex
Length = 340
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|1JFS|A Chain A, Purine Repressor Mutant-Hypoxanthine-Purf Operator Complex
Length = 340
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|2PUE|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUF|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUG|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
Length = 340
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 299 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 335
>pdb|1DBQ|A Chain A, Dna-Binding Regulatory Protein
pdb|1DBQ|B Chain B, Dna-Binding Regulatory Protein
Length = 289
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 248 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 284
>pdb|1JHZ|A Chain A, Purine Repressor Mutant Corepressor Binding Domain
Structure
pdb|1JHZ|B Chain B, Purine Repressor Mutant Corepressor Binding Domain
Structure
Length = 289
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 83 TGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPF 119
T F L D I K E Q+IE+ +I +DGPF
Sbjct: 248 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF 284
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 29/119 (24%)
Query: 114 PSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAA 173
P D P+ + + +P+ NPP + F + NI
Sbjct: 50 PPDTPYEGGRYQLEIKIPETYPFNPPKVR----------------FITKIWHPNISSVTG 93
Query: 174 ALQASLAGTNWAAAIEKRRA-------------EDPTSSYIVAQYNSPFEFYNRVNEIW 219
A+ + WAAA+ R +DP + + QY E + + +W
Sbjct: 94 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLW 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,483,496
Number of Sequences: 62578
Number of extensions: 252267
Number of successful extensions: 750
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 29
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)