Query 026987
Match_columns 230
No_of_seqs 124 out of 486
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 1.4E-53 3E-58 355.2 16.7 172 41-223 1-176 (176)
2 PRK10016 DNA gyrase inhibitor; 97.4 0.029 6.2E-07 45.2 17.0 149 55-224 2-154 (156)
3 PF06445 GyrI-like: GyrI-like 97.3 0.019 4.1E-07 44.3 14.8 148 55-223 2-155 (155)
4 COG3449 DNA gyrase inhibitor [ 93.8 1.8 3.8E-05 35.6 11.7 144 55-221 2-148 (154)
5 smart00871 AraC_E_bind Bacteri 90.8 5.9 0.00013 30.1 15.6 130 81-223 26-158 (158)
6 PRK10016 DNA gyrase inhibitor; 90.6 1.8 3.9E-05 34.7 8.1 68 143-222 2-71 (156)
7 COG3449 DNA gyrase inhibitor [ 89.7 1.4 3E-05 36.3 6.7 69 143-222 2-72 (154)
8 PF06445 GyrI-like: GyrI-like 88.4 2.1 4.5E-05 32.6 6.7 72 143-223 2-74 (155)
9 smart00871 AraC_E_bind Bacteri 63.7 31 0.00068 26.0 6.5 76 143-225 1-78 (158)
10 COG3708 Uncharacterized protei 61.5 89 0.0019 25.5 9.3 88 122-224 66-156 (157)
11 PRK15121 right oriC-binding tr 40.2 2.5E+02 0.0055 24.5 10.4 59 123-185 195-254 (289)
12 COG4978 Transcriptional regula 38.3 2.2E+02 0.0047 23.2 13.9 145 56-223 5-152 (153)
13 PF15052 TMEM169: TMEM169 prot 24.1 64 0.0014 25.7 2.2 44 10-53 77-130 (133)
14 KOG0417 Ubiquitin-protein liga 21.5 1.2E+02 0.0025 24.9 3.3 27 114-140 40-66 (148)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=1.4e-53 Score=355.16 Aligned_cols=172 Identities=40% Similarity=0.748 Sum_probs=137.2
Q ss_pred CCCCCCeEEEeecCCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCCCCcc
Q 026987 41 RIECPSFETVHVGNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFC 120 (230)
Q Consensus 41 ~~e~P~Y~vl~~~~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~ 120 (230)
+.|||+|+||++.++||||+|++++||||+ +.+++++.|..+||++|++||+|+|+++.+|+||+||++++.+++...|
T Consensus 1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~-~~~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~ 79 (176)
T PF04832_consen 1 DIECPPYEVLKKGDDYEIRRYPPAKWASTT-VSGCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESC 79 (176)
T ss_dssp --BS-SEEEECCCSSCEEEEE--CEEEEEE-EECS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEETTTTTC
T ss_pred CCcCCCeEEEEeCCCEEEEEECCceEEEEE-ecCCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEcCCCccc
Confidence 479999999999999999999999999998 7778999999999999999999999999999999999999976655578
Q ss_pred cceEEEEEEeeCCCC-CCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCC
Q 026987 121 ESSFTVSFYVPKVNQ-ANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPT 197 (230)
Q Consensus 121 ~~~~tmsF~lP~~~~-~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~ 197 (230)
++.++|||+||++|+ .+||.| ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+. +.
T Consensus 80 ~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----------~~ 149 (176)
T PF04832_consen 80 EKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLK----------DK 149 (176)
T ss_dssp ECEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHH----------CC
T ss_pred CCcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCC----------cC
Confidence 899999999999999 777765 68999999999999999999999999999999999999999974 46
Q ss_pred CceEEEEeCCCCCC-CCceeeEEEEEe
Q 026987 198 SSYIVAQYNSPFEF-YNRVNEIWLLFD 223 (230)
Q Consensus 198 ~~~~~A~Yd~P~~~-~~RrNEV~i~~~ 223 (230)
+.+++|+||+||++ ++|||||||+++
T Consensus 150 ~~~~~a~Yd~P~~~~~~R~NEV~i~v~ 176 (176)
T PF04832_consen 150 GYYYVAGYDPPFTPPFNRRNEVWIPVK 176 (176)
T ss_dssp CEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred CCeEEEEcCCCCCCccCcceEEEEecC
Confidence 79999999999765 899999999985
No 2
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=97.39 E-value=0.029 Score=45.22 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=93.5
Q ss_pred CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE--cCCCCCcccceEEEEEEeeC
Q 026987 55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV--LPSDGPFCESSFTVSFYVPK 132 (230)
Q Consensus 55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~--~~~~~~~~~~~~tmsF~lP~ 132 (230)
+++|+..++...++.. .. +++.+...++|.+|+.++..+|-. .+. .+.-. .|...+..+-.+-++.-+|.
T Consensus 2 ~v~i~~~~~~~va~ir-~~-g~~~~~~~~~~~~L~~~~~~~~l~-----~~~-~~~i~~D~p~~~~~~~~R~d~~i~v~~ 73 (156)
T PRK10016 2 NYEIKQEQKRTIAGFH-LV-GPWEQTVKQGFEQLMMWVDSHNIV-----PKE-WVAVYYDNPDEVPAEKLRCDTVVTVPD 73 (156)
T ss_pred ceEEEEccCceEEEEE-ee-cCchhHHHHHHHHHHHHHHHcCCC-----CCc-EEEEECCCCCCCChHHceeeEEEEeCC
Confidence 4788999999888875 33 344445678999999999766532 122 23222 12111111114788999997
Q ss_pred CCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHH-HHHHHhcCCchhhhhhhccCCCCCceEEEEeC-CCCC
Q 026987 133 VNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAA-LQASLAGTNWAAAIEKRRAEDPTSSYIVAQYN-SPFE 210 (230)
Q Consensus 133 ~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd-~P~~ 210 (230)
+... ++...++.+..+|+..+||..+.|. -+.+.+.... +.+||..+|++. .. .+.+-.|. .|..
T Consensus 74 ~~~~-~~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~---------~~-~p~~E~Y~~~~~~ 140 (156)
T PRK10016 74 DFVL-PENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQM---------AP-KPCFEVYLNDGAE 140 (156)
T ss_pred Cccc-CCCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCcc---------CC-CCCEEEeCCCCCC
Confidence 6422 1122468889999999999999995 4456776666 778999988753 11 22233444 3433
Q ss_pred CCCceeeEEEEEec
Q 026987 211 FYNRVNEIWLLFDL 224 (230)
Q Consensus 211 ~~~RrNEV~i~~~~ 224 (230)
...-.-||||+++.
T Consensus 141 ~~~~~tei~iPI~~ 154 (156)
T PRK10016 141 DGYWDIEMYVPVQK 154 (156)
T ss_pred CCcEEEEEEEEeEE
Confidence 32324699999983
No 3
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=97.33 E-value=0.019 Score=44.29 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=96.3
Q ss_pred CeEEEEeCCeeEEEeccccCccHhHH--HHHHHHHHHhhhcCCCCcCccccCCccEEEEEc--CCCCCcccceEEEEEEe
Q 026987 55 GFEIRHYNSSMWMSTSPIQDISLVQA--TRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVL--PSDGPFCESSFTVSFYV 130 (230)
Q Consensus 55 ~yEiR~Y~~~~wasT~~~~~~~~~~a--~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~--~~~~~~~~~~~tmsF~l 130 (230)
+++|+.-++...+... . ..++... ....+++|..++.-.+... ...+.+.-.. +...+...-.+.+++.+
T Consensus 2 ~~~i~~~p~~~v~~~~-~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIR-R-KGPYEEEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNITDDEEFRYDIGVEV 75 (155)
T ss_dssp CEEEEEEEEEEEEEEE-E-EEEHHHHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSSTGCEEEEEEEEEE
T ss_pred CcEEEEECCEEEEEEE-E-EECCchhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccccCCcceEEEEEEEE
Confidence 4788888888888875 2 2344444 5688899988886322111 3445443332 22222223355556665
Q ss_pred eCCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHH-HHhcCCchhhhhhhccCCCCCceEEEEeCCCC
Q 026987 131 PKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQA-SLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPF 209 (230)
Q Consensus 131 P~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~ 209 (230)
+... +.++++....+|+..+++..|.|.. +.+.+....|.. +|.++|+.. ..+..+-...+.|.
T Consensus 76 ~~~~----~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~~---------~~~~~~E~y~~~~~ 140 (155)
T PF06445_consen 76 DEDV----PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYER---------RDGPDFEIYLNDPD 140 (155)
T ss_dssp CTTC----SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCEE---------ESSEEEEEEESSTT
T ss_pred cccc----cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCcc---------CCCCcEEEECCCCC
Confidence 5433 5567899999999999999999977 778889999999 999999731 12333344445555
Q ss_pred C-CCCceeeEEEEEe
Q 026987 210 E-FYNRVNEIWLLFD 223 (230)
Q Consensus 210 ~-~~~RrNEV~i~~~ 223 (230)
. ...-.=||||+++
T Consensus 141 ~~~~~~~~ei~iPik 155 (155)
T PF06445_consen 141 TDEEEYVTEIYIPIK 155 (155)
T ss_dssp TTSCGEEEEEEEEEE
T ss_pred CCCCceEEEEEEEEC
Confidence 3 2455679999985
No 4
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=93.83 E-value=1.8 Score=35.60 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=89.6
Q ss_pred CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEE--EEcCCCCCcccceEEEEEEeeC
Q 026987 55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVIT--EVLPSDGPFCESSFTVSFYVPK 132 (230)
Q Consensus 55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~--~~~~~~~~~~~~~~tmsF~lP~ 132 (230)
+++|+..++...|... ..+ ...-..++|.+|..+-.-++--- -+..-+. +-.|...+..+=.+-.|..+|.
T Consensus 2 dv~I~e~p~~~VA~~r-h~G--~~~~~~~~~~~l~~W~~~~~l~p----~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~ 74 (154)
T COG3449 2 DVEIIELPPIPVAYLR-HVG--DPATLKQTFEQLIAWRRENGLLP----EQSETLGIYQDDPDTTPAEKCRYDACVVVPE 74 (154)
T ss_pred CceEEecCCceEEEEE-eeC--cHHHHHHHHHHHHHHHHHcCCCC----CCceEEEEecCCCCCCCHHHceeeEEEEcCC
Confidence 6899999999998875 344 34557789999999987655321 1222111 1134433433446777888883
Q ss_pred CCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHH-HHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC
Q 026987 133 VNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEA-AALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF 211 (230)
Q Consensus 133 ~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~-~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~ 211 (230)
.. ++.+..|..-.+|+..+||.+|.|.. +++.+-. .-+.++|..+|.. ..+.+.+.+|=...-
T Consensus 75 ~~---~~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~----------~~d~P~~e~y~n~~~- 138 (154)
T COG3449 75 PI---PENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYE----------PRDRPILERYLNFPA- 138 (154)
T ss_pred cc---CCCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcc----------cCCCchHHHHhccCC-
Confidence 22 33346799999999999999999954 3455544 4455666666653 234566777744433
Q ss_pred CCceeeEEEE
Q 026987 212 YNRVNEIWLL 221 (230)
Q Consensus 212 ~~RrNEV~i~ 221 (230)
..-.-|+.+.
T Consensus 139 ~~~~~e~~vd 148 (154)
T COG3449 139 EDPEHEIEVD 148 (154)
T ss_pred CCcceeEEEE
Confidence 2333444443
No 5
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=90.81 E-value=5.9 Score=30.14 Aligned_cols=130 Identities=16% Similarity=0.086 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhcCCCCcCccccCCccEEEEE-cCCCCCcccceEEEEEEeeCCCCCCCCCCCCceEEEecCeEEEEEEe
Q 026987 81 TRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV-LPSDGPFCESSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQF 159 (230)
Q Consensus 81 ~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~-~~~~~~~~~~~~tmsF~lP~~~~~~PP~p~~V~I~~~p~~~vaV~~F 159 (230)
..+.|.+|++++...+....... ..+..... .+...+...-.+.+++.++... ..+..+.+..+|+..+++.+|
T Consensus 26 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~----~~~~~~~~~~~p~~~y~~~~~ 100 (158)
T smart00871 26 IPELWQRLIAWAKELGLLPIGPS-GPPYGVYYDDPDDTPEGEFRYDAGVEVSDEV----ENPEGVETKEIPAGKYAVFTH 100 (158)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC-ccEEEEECCCCCCCChhHeEEEEEEEeCCCC----CCCCCceEEEECCCcEEEEEE
Confidence 45778888888765443222111 12222211 1221111122455555555432 224568888999999999999
Q ss_pred cCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--CCceeeEEEEEe
Q 026987 160 SGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--YNRVNEIWLLFD 223 (230)
Q Consensus 160 ~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--~~RrNEV~i~~~ 223 (230)
.|. ..+.+.+...+|..++..+++... ...+..+--.++.|... ....-|++|+++
T Consensus 101 ~g~-~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~E~y~~~~~~~~~~~~~~ei~ipv~ 158 (158)
T smart00871 101 KGG-SYDEIQETWEAIYGEWLPNSGYEL-------RDAGPDFEIYLNDPADTDPEELVTEIYIPIK 158 (158)
T ss_pred cCC-CHHHHHHHHHHHHHhhcccCCCcc-------CcCCceEEEEeCCCCCCChhHeEEEEEEEcC
Confidence 993 466788889999988887764210 11122222234444331 244678888873
No 6
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=90.62 E-value=1.8 Score=34.65 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=49.6
Q ss_pred CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCC--CCCCCceeeEEE
Q 026987 143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSP--FEFYNRVNEIWL 220 (230)
Q Consensus 143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P--~~~~~RrNEV~i 220 (230)
+|+|..+|+..++.++..|...+ .+.+...+|.+++.++|+. .. ..+...||.| ....+-|-.|.|
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~----------~~-~~~~i~~D~p~~~~~~~~R~d~~i 69 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV----------PK-EWVAVYYDNPDEVPAEKLRCDTVV 69 (156)
T ss_pred ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC----------CC-cEEEEECCCCCCCChHHceeeEEE
Confidence 58899999999999999997643 4778889999999998863 12 3677889999 433333444444
Q ss_pred EE
Q 026987 221 LF 222 (230)
Q Consensus 221 ~~ 222 (230)
.+
T Consensus 70 ~v 71 (156)
T PRK10016 70 TV 71 (156)
T ss_pred Ee
Confidence 33
No 7
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=89.75 E-value=1.4 Score=36.26 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=53.5
Q ss_pred CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--CCceeeEEE
Q 026987 143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--YNRVNEIWL 220 (230)
Q Consensus 143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--~~RrNEV~i 220 (230)
+|.|.+.|+..||..+=.| ....+.+-.++|.+|.+++|+-+ ..+...-..||.|-+- ..=|--+.+
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p---------~~S~~~gI~~ddP~~Tp~e~~R~D~cv 70 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP---------EQSETLGIYQDDPDTTPAEKCRYDACV 70 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC---------CCceEEEEecCCCCCCCHHHceeeEEE
Confidence 6899999999999999999 78889999999999999999742 3467777788999853 233344444
Q ss_pred EE
Q 026987 221 LF 222 (230)
Q Consensus 221 ~~ 222 (230)
.+
T Consensus 71 ~v 72 (154)
T COG3449 71 VV 72 (154)
T ss_pred Ec
Confidence 44
No 8
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=88.43 E-value=2.1 Score=32.61 Aligned_cols=72 Identities=15% Similarity=0.023 Sum_probs=53.7
Q ss_pred CceEEEecCeEEEEEEecCcCChhh-HHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCCCCceeeEEEE
Q 026987 143 GLHIQQWKATYAAVRQFSGFVSDSN-IGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 221 (230)
Q Consensus 143 ~V~I~~~p~~~vaV~~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~ 221 (230)
+|+|.++|+++++..+..|...+.. +.+..++|.+++...++. .....++...||.|.........+.+-
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS---------TDPGPIIGIYYDNPNITDDEEFRYDIG 72 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC---------CSSSSEEEEEEECCTSSTGCEEEEEEE
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc---------cCCCcceeEEeccccccCCcceEEEEE
Confidence 5889999999999999999887776 889999999999876542 134567777888886444555555544
Q ss_pred Ee
Q 026987 222 FD 223 (230)
Q Consensus 222 ~~ 223 (230)
+.
T Consensus 73 ~~ 74 (155)
T PF06445_consen 73 VE 74 (155)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 9
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=63.71 E-value=31 Score=25.98 Aligned_cols=76 Identities=16% Similarity=0.013 Sum_probs=49.9
Q ss_pred CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCCC--CceeeEEE
Q 026987 143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFY--NRVNEIWL 220 (230)
Q Consensus 143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~--~RrNEV~i 220 (230)
+++|..+|+..++..++.|...+..+.+..++|.+++...+... ....+..+...|+.|..-. .=+=++.+
T Consensus 1 ~~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 73 (158)
T smart00871 1 EVRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLP-------IGPSGPPYGVYYDDPDDTPEGEFRYDAGV 73 (158)
T ss_pred CCEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCC-------CCCCccEEEEECCCCCCCChhHeEEEEEE
Confidence 36788899999999999998775567778888888888766421 0112356667777776411 11345555
Q ss_pred EEecC
Q 026987 221 LFDLE 225 (230)
Q Consensus 221 ~~~~~ 225 (230)
.++..
T Consensus 74 ~v~~~ 78 (158)
T smart00871 74 EVSDE 78 (158)
T ss_pred EeCCC
Confidence 55543
No 10
>COG3708 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.50 E-value=89 Score=25.54 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred ceEEEEEEeeCCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHH-HhcCCchhhhhhhccCCCCCce
Q 026987 122 SSFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQAS-LAGTNWAAAIEKRRAEDPTSSY 200 (230)
Q Consensus 122 ~~~tmsF~lP~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~-L~~~g~~~~~~~~~~~~~~~~~ 200 (230)
++|+...-+.-. ..-..|......++|+.+++|-...|...+ +++-...+-.. +...+... + .+.
T Consensus 66 g~~~y~i~~ev~--~~~~~pe~~~~i~iPa~~YavFt~~G~~~~--i~etw~~I~~~~~~~~~~~~--------~-~~~- 131 (157)
T COG3708 66 GEFDYYIGVEVE--DFEDLPEGMEVIEIPASTYAVFTHKGPIEE--IQETWQEIWKEWFPSSGYRH--------A-EGP- 131 (157)
T ss_pred CCEEEEEEEEee--ccccCCCCceEEEeccceEEEEEecCCHHH--HHHHHHHHHHhhcccccccc--------c-CCC-
Confidence 455554444432 223446678888999999999998997766 66666666555 56666532 2 223
Q ss_pred EEEEeCCC--CCCCCceeeEEEEEec
Q 026987 201 IVAQYNSP--FEFYNRVNEIWLLFDL 224 (230)
Q Consensus 201 ~~A~Yd~P--~~~~~RrNEV~i~~~~ 224 (230)
.+=.||.= .. .+-.=||||+|+.
T Consensus 132 ~fE~Yd~~~~~~-~~~~veIyIpV~k 156 (157)
T COG3708 132 EFEVYDERDPDS-GNGKVEIYIPVKK 156 (157)
T ss_pred ceEEecCCCCCC-CCceEEEEEEEec
Confidence 56678764 22 5778999999975
No 11
>PRK15121 right oriC-binding transcriptional activator; Provisional
Probab=40.23 E-value=2.5e+02 Score=24.51 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=39.0
Q ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHH-HHHHhcCCch
Q 026987 123 SFTVSFYVPKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAAL-QASLAGTNWA 185 (230)
Q Consensus 123 ~~tmsF~lP~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~ 185 (230)
.+..+.-++.....+. .|+. ....+|+.++||-+|.|...+ +.+-...+ .+||-..|+.
T Consensus 195 ~~~y~i~v~~~~~~~~-~~~~-~~~~Ip~G~YAvF~~~G~~~~--l~~~~~~Iy~~WLP~sg~~ 254 (289)
T PRK15121 195 EVFYTTALEPDQADGY-VQTG-HPVMLQGGEYVMFTYEGLGTG--LQEFILTVYGTCMPMLNLT 254 (289)
T ss_pred EEEEEEeecccccccc-CCCC-ceEeeCCCCEEEEEEeCCHHH--HHHHHHHHHHHHCCCCCcc
Confidence 5666666665433221 1223 567789999999999997643 66666555 5788888875
No 12
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=38.32 E-value=2.2e+02 Score=23.18 Aligned_cols=145 Identities=10% Similarity=0.056 Sum_probs=83.8
Q ss_pred eEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCCCCcccceEEEEEEeeCCCC
Q 026987 56 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQ 135 (230)
Q Consensus 56 yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~~~~~tmsF~lP~~~~ 135 (230)
..+...++...+... .... ........++.|.++++-++. +.+ .|.........-...+-..-+++++=...+
T Consensus 5 ~~~~~~~~~~v~~ir-~~~~-~~~~~~~~~~el~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~ 77 (153)
T COG4978 5 VVIKKLEEIKVVGIR-FTGI-PERLIEQVYSELCNFLKSNGI----IPI-GPYGATIFHEPLKEEDVDIEVSIPISGEVE 77 (153)
T ss_pred cEEEeecceeEEEEE-EecC-cHHHHHHHHHHHHHHHhhcCc----ccc-CCceEEEEeeeecccccccceeEEEEEecC
Confidence 456667777777664 3322 455677889999998875431 111 233222211100000012334444333222
Q ss_pred CCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCC---CC
Q 026987 136 ANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFE---FY 212 (230)
Q Consensus 136 ~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~---~~ 212 (230)
-+.++++...|..+++...|.|... .+.+.-++|.++++++|+... +..+=---.+|.+ ..
T Consensus 78 ----~~~~~~~~~~P~g~~a~~~~~G~~~--~~~~~y~rli~~iee~g~~i~----------g~~~E~y~~d~~~~~~~~ 141 (153)
T COG4978 78 ----GDIDIKIKTLPKGKYACIIHKGSYE--EVEQAYKRLIEYIEENGLEII----------GPSREVYLIDPATEVNPE 141 (153)
T ss_pred ----CCCcceeEEccCceEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCccc----------CceEEEEecCCccccChh
Confidence 3467999999999999999999764 477788999999999997631 1222222244442 23
Q ss_pred CceeeEEEEEe
Q 026987 213 NRVNEIWLLFD 223 (230)
Q Consensus 213 ~RrNEV~i~~~ 223 (230)
.=.-||.++++
T Consensus 142 e~~tei~i~v~ 152 (153)
T COG4978 142 EYLTEIQIPVK 152 (153)
T ss_pred HeEEEEEEEee
Confidence 45678888775
No 13
>PF15052 TMEM169: TMEM169 protein family
Probab=24.13 E-value=64 Score=25.70 Aligned_cols=44 Identities=18% Similarity=0.483 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhcCCCCC-----CCCCC--ccCCCCCCCC---CCCCeEEEeec
Q 026987 10 FSVLLGLLSNLNLGLWPE-----SSKGL--KIFPPTCNRI---ECPSFETVHVG 53 (230)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-----~~~~~--~~~P~~c~~~---e~P~Y~vl~~~ 53 (230)
.++.||+-+-..|=-|++ ++.++ +..++-|... ||-+|+|+.-.
T Consensus 77 ~t~~LglYaa~~QlSw~~~~W~~~v~D~EKGF~GWlCs~L~l~dCSPYeVV~L~ 130 (133)
T PF15052_consen 77 VTLSLGLYAAFVQLSWSFGSWWNEVRDFEKGFYGWLCSKLGLEDCSPYEVVILT 130 (133)
T ss_pred HHHHHHHHHHhhheeeeHHHHHHHhhHhhcchhhhhcccCCCCCCCCcEEEEEe
Confidence 667777766666655665 45666 6688888755 79999999754
No 14
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.47 E-value=1.2e+02 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=21.0
Q ss_pred CCCCCcccceEEEEEEeeCCCCCCCCC
Q 026987 114 PSDGPFCESSFTVSFYVPKVNQANPPP 140 (230)
Q Consensus 114 ~~~~~~~~~~~tmsF~lP~~~~~~PP~ 140 (230)
|.+.+-.++.|.+++++|.+|--.||+
T Consensus 40 P~~SpYEgG~F~l~I~~p~~YP~~PPk 66 (148)
T KOG0417|consen 40 PPGSPYEGGVFFLEIHFPEDYPFKPPK 66 (148)
T ss_pred CCCCCcCCCEEEEEEECCCCCCCCCCc
Confidence 455566788999999999999655553
Done!