Query 026987
Match_columns 230
No_of_seqs 124 out of 486
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:49:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b0y_A Heme-binding protein 2; 100.0 8.5E-56 2.9E-60 380.8 18.6 185 33-227 33-223 (227)
2 3r8j_A Heme-binding protein 2; 100.0 2.1E-55 7.1E-60 375.2 18.0 181 36-226 17-203 (212)
3 2gov_A P22HBP, heme-binding pr 100.0 1.5E-55 5E-60 372.1 16.3 177 37-223 13-195 (195)
4 1jyh_A DNA gyrase inhibitory p 98.5 4.2E-06 1.4E-10 63.8 14.8 151 55-226 2-156 (157)
5 3e0h_A Uncharacterized protein 98.2 0.0001 3.6E-09 57.7 15.2 145 55-224 8-157 (158)
6 3b49_A LIN2189 protein; BIG 86 96.6 0.12 4.1E-06 42.4 15.9 160 55-223 24-211 (211)
7 1r8e_A Multidrug-efflux transp 95.9 0.16 5.5E-06 43.0 13.1 150 54-223 122-277 (278)
8 1d5y_A ROB transcription facto 94.3 1.3 4.4E-05 37.3 14.2 76 141-228 209-291 (292)
9 3lur_A Putative bacterial tran 91.8 1.3 4.6E-05 34.0 9.6 73 141-224 84-158 (158)
10 3gk6_A Integron cassette prote 90.1 3.7 0.00013 32.3 10.9 67 141-223 102-170 (170)
11 3e0h_A Uncharacterized protein 78.6 10 0.00035 28.5 8.2 71 143-225 8-80 (158)
12 3b49_A LIN2189 protein; BIG 86 65.3 20 0.00068 28.8 7.3 44 142-185 23-72 (211)
13 1jyh_A DNA gyrase inhibitory p 53.2 58 0.002 23.1 8.5 70 143-224 2-73 (157)
14 1r8e_A Multidrug-efflux transp 44.4 32 0.0011 28.4 5.3 72 142-225 122-197 (278)
15 2q3l_A Uncharacterized protein 32.3 64 0.0022 23.8 4.7 40 144-183 11-50 (126)
16 1x47_A DGCR8 protein; structur 28.6 1.6E+02 0.0053 20.8 6.8 64 40-107 29-95 (98)
17 2ook_A Hypothetical protein; s 27.9 1E+02 0.0036 22.6 5.3 38 144-181 11-48 (127)
18 3c6f_A YETF protein; uncharact 24.9 89 0.003 24.2 4.5 65 137-211 75-142 (153)
No 1
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.5e-56 Score=380.84 Aligned_cols=185 Identities=36% Similarity=0.589 Sum_probs=157.6
Q ss_pred ccCCCCCCCCCCCCeEEEee----cCCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccE
Q 026987 33 KIFPPTCNRIECPSFETVHV----GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPV 108 (230)
Q Consensus 33 ~~~P~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV 108 (230)
+..++.|.+.|||+|+||++ .++||||+|++++||+|+ +.++++++|...||++|++||+|+|.++.+|+||+||
T Consensus 33 ~~~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV 111 (227)
T 4b0y_A 33 AAEDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPV 111 (227)
T ss_dssp --------CCBCCCEECCC------CCSEEEEECCEEEEEEE-EEESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSCE
T ss_pred cccccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCE
Confidence 44667788999999999999 899999999999999998 7788999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchh
Q 026987 109 ITEVLPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAA 186 (230)
Q Consensus 109 ~~~~~~~~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~ 186 (230)
++++.+++++.|++.|+|+|+||++||.+||.| ++|+|+++|+++|||++|+|++++.++.+++++|+++|+++|+.
T Consensus 112 ~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~- 190 (227)
T 4b0y_A 112 TSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV- 190 (227)
T ss_dssp EEEEECCC--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCC-
T ss_pred EEEEecCCCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCc-
Confidence 999999888888999999999999999888777 58999999999999999999999999999999999999999864
Q ss_pred hhhhhccCCCCCceEEEEeCCCCCCCCceeeEEEEEecCCC
Q 026987 187 AIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEEG 227 (230)
Q Consensus 187 ~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~~~~~~ 227 (230)
+..+.|++|+||+||++++|||||||.+++++.
T Consensus 191 --------~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~e~~ 223 (227)
T 4b0y_A 191 --------FDEKVYYTAGYNSPVKLLNRNNEVWLIQKNEPT 223 (227)
T ss_dssp --------BCSSCEEEEECC---CCCSSCEEEEEEBC----
T ss_pred --------cCCCcEEEEEeCCCCCcCCceeEEEEEECCCCC
Confidence 456678999999999999999999999988763
No 2
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=2.1e-55 Score=375.24 Aligned_cols=181 Identities=37% Similarity=0.614 Sum_probs=164.7
Q ss_pred CCCCCCCCCCCeEEEee----cCCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEE
Q 026987 36 PPTCNRIECPSFETVHV----GNGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITE 111 (230)
Q Consensus 36 P~~c~~~e~P~Y~vl~~----~~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~ 111 (230)
.+-+.+.|||+|+||++ .++||||+|++++||+|+ +.++++++|...||++|++||+|+|.++.+|+||+||+++
T Consensus 17 ~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~-v~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~ 95 (212)
T 3r8j_A 17 DAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 95 (212)
T ss_dssp -----CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEE-EEESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEE
T ss_pred hhhcCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEE-EeCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEE
Confidence 34445799999999999 899999999999999998 7788999999999999999999999999999999999999
Q ss_pred EcCCCCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhh
Q 026987 112 VLPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIE 189 (230)
Q Consensus 112 ~~~~~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~ 189 (230)
+.+++++.|++.|+|+|+||++||.+||.| ++|+|+++|+++|||++|+|++++.++.+++++|+++|+++|+.
T Consensus 96 ~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~---- 171 (212)
T 3r8j_A 96 VEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV---- 171 (212)
T ss_dssp EECTTSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCC----
T ss_pred EecCCCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCc----
Confidence 999888889999999999999999888776 68999999999999999999999999999999999999999864
Q ss_pred hhccCCCCCceEEEEeCCCCCCCCceeeEEEEEecCC
Q 026987 190 KRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFDLEE 226 (230)
Q Consensus 190 ~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~~~~~ 226 (230)
+..+.|++|+||+||++++|||||||++++++
T Consensus 172 -----~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~~e~ 203 (212)
T 3r8j_A 172 -----FDEKVYYTAGYNSPVKLLNRNNEVWLIQKNEP 203 (212)
T ss_dssp -----BCSSCEEEEESSSSSCCSSSCEEEEEEBCC--
T ss_pred -----cCCCcEEEEEeCCCCCcCCceeEEEEEeCCCC
Confidence 45667899999999999999999999999863
No 3
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=1.5e-55 Score=372.05 Aligned_cols=177 Identities=23% Similarity=0.442 Sum_probs=164.9
Q ss_pred CCCCCCCCCCeEEEeecCC----eEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE
Q 026987 37 PTCNRIECPSFETVHVGNG----FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV 112 (230)
Q Consensus 37 ~~c~~~e~P~Y~vl~~~~~----yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~ 112 (230)
+-|.+.|||+|+||++.++ ||||+|++++||+|+ +.++++++|...||++|++||+|+|.++.+|+||+||++++
T Consensus 13 ~~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~-~~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~ 91 (195)
T 2gov_A 13 SLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVE-VTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAV 91 (195)
T ss_dssp CCCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEE-EESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEE
T ss_pred cccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEE-ecCCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEE
Confidence 4588999999999999877 999999999999998 78889999999999999999999999999999999999998
Q ss_pred cCCCCCcccceEEEEEEeeCCCCCCCCCC--CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhh
Q 026987 113 LPSDGPFCESSFTVSFYVPKVNQANPPPA--KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEK 190 (230)
Q Consensus 113 ~~~~~~~~~~~~tmsF~lP~~~~~~PP~p--~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~ 190 (230)
.+.+++.|.+.|+|+|+||++||.+||.| ++|+|+++|++++||++|+|++++.++.+++++|+++|+++|+.
T Consensus 92 ~p~~~~~~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~----- 166 (195)
T 2gov_A 92 FPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT----- 166 (195)
T ss_dssp EECTTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC-----
T ss_pred cCCCCCCcCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCc-----
Confidence 88888889999999999999999888777 68999999999999999999999999999999999999999864
Q ss_pred hccCCCCCceEEEEeCCCCCCCCceeeEEEEEe
Q 026987 191 RRAEDPTSSYIVAQYNSPFEFYNRVNEIWLLFD 223 (230)
Q Consensus 191 ~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i~~~ 223 (230)
+..+.|++|+||+||++++|||||||+++
T Consensus 167 ----~~~~~~~~a~Yn~P~~~~~RrNEV~i~~~ 195 (195)
T 2gov_A 167 ----YQGDVYYCAGYDPPMKPYGRRNEVWLVKA 195 (195)
T ss_dssp ----EEEEEEEEEESSCCSSSSCCEEEEEEEEC
T ss_pred ----ccCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence 34557899999999999999999999863
No 4
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=98.52 E-value=4.2e-06 Score=63.77 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=98.5
Q ss_pred CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCccEEEEE--cCCCCCcccceEEEEEEeeC
Q 026987 55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEV--LPSDGPFCESSFTVSFYVPK 132 (230)
Q Consensus 55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~--~~~~~~~~~~~~tmsF~lP~ 132 (230)
+++|+..++...+.+. .. +++.+....++.+|++++...|... . +.+.-. .+...+...-.+.+++.+|.
T Consensus 2 ~~~i~~~~~~~v~~~~-~~-g~~~~~i~~~~~~l~~~~~~~~~~~-----~-~~~gi~~~~~~~~~~~~~~~~~~~~v~~ 73 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFH-LV-GPWEQTVKKGFEQLMMWVDSKNIVP-----K-EWVAVYYDNPDETPAEKLRCDTVVTVPG 73 (157)
T ss_dssp CCEEEEECCEEEEEEE-EE-SCHHHHHHHHHHHHHHHHHHTTCCC-----S-EEEEEECSCTTTSCGGGCEEEEEEEECT
T ss_pred CCEEEEeCCeEEEEEE-EE-CCchhhHHHHHHHHHHHHHHcCCCC-----C-cEEEEECCCCCCCCHHHheEEEEEEecC
Confidence 4789999999888875 33 3444456789999999987654321 1 333211 12211112346778888886
Q ss_pred CCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHH-HHHhcCCchhhhhhhccCCCCCceEEEEeC-CCCC
Q 026987 133 VNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQ-ASLAGTNWAAAIEKRRAEDPTSSYIVAQYN-SPFE 210 (230)
Q Consensus 133 ~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd-~P~~ 210 (230)
.... ||.++++.+..+|+.++||..|.|... .+.+...+|. ++|.++|+.. .+.+.+-.|. .|..
T Consensus 74 ~~~~-~~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~~----------~~~~~~E~Y~~~~~~ 140 (157)
T 1jyh_A 74 YFTL-PENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYEM----------LPKPCFEVYLNNGAE 140 (157)
T ss_dssp TCCC-CSSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEEE----------CSSCEEEEECSCHHH
T ss_pred cccc-CCCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCcc----------CCCceEEEecCCCCC
Confidence 5432 233467889999999999999999863 4667777885 8999988752 1234566673 2223
Q ss_pred CCCceeeEEEEEecCC
Q 026987 211 FYNRVNEIWLLFDLEE 226 (230)
Q Consensus 211 ~~~RrNEV~i~~~~~~ 226 (230)
....+.||||+++..+
T Consensus 141 ~~~~~tei~ipi~~~~ 156 (157)
T 1jyh_A 141 DGYWDIEMYVAVQPKH 156 (157)
T ss_dssp HSSEEEEEEEEEEEC-
T ss_pred cccEEEEEEEEeeeCC
Confidence 3456679999998653
No 5
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=98.15 E-value=0.0001 Score=57.65 Aligned_cols=145 Identities=11% Similarity=0.099 Sum_probs=96.5
Q ss_pred CeEEEEeCCeeEEEeccccCccHhH---HHHHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCCCCcccceEEEEEEee
Q 026987 55 GFEIRHYNSSMWMSTSPIQDISLVQ---ATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVP 131 (230)
Q Consensus 55 ~yEiR~Y~~~~wasT~~~~~~~~~~---a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~~~~~tmsF~lP 131 (230)
+++|+..++...|... ... ++.+ ....+|.+|++++..++- ..+.|.+.-....+. .+-++.+++.++
T Consensus 8 ~v~I~~~p~~~va~ir-~~~-~~~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~--~~~~~~~~~~v~ 78 (158)
T 3e0h_A 8 VCELKELAPVPALLIR-TQT-TMSELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA--GTFEVEFGFPVE 78 (158)
T ss_dssp CEEEEEECCCEEEEEE-EEE-CHHHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT--SCEEEEEEEECC
T ss_pred ccEEEeeCCceEEEEE-eec-CHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC--cceEEEEEEEeC
Confidence 5789999999988875 222 2322 234789999999876543 234443333222211 123455566555
Q ss_pred CCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCC-
Q 026987 132 KVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFE- 210 (230)
Q Consensus 132 ~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~- 210 (230)
... +.+.++.+..+|+.++|+.++.|...+ +.+..++|.++|.++|+.. .+..+-..+|.|..
T Consensus 79 ~~~----~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~----------~~~~~E~Y~~~p~~~ 142 (158)
T 3e0h_A 79 GGV----EGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDL----------SGEAYEIYLDNPAET 142 (158)
T ss_dssp SCC----CCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCE----------EEEEEEEECSCTTSS
T ss_pred CCC----CCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCc----------CCCEEEEEeCCCCCC
Confidence 432 335689999999999999999997653 8888899999999998742 12333334577775
Q ss_pred C-CCceeeEEEEEec
Q 026987 211 F-YNRVNEIWLLFDL 224 (230)
Q Consensus 211 ~-~~RrNEV~i~~~~ 224 (230)
. ...+.||||+++.
T Consensus 143 ~~~~~~tei~ipv~~ 157 (158)
T 3e0h_A 143 APDQLRTRVSLMLHE 157 (158)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred CHHHhEEEEEEEEcC
Confidence 2 4678999999975
No 6
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=96.62 E-value=0.12 Score=42.37 Aligned_cols=160 Identities=8% Similarity=-0.051 Sum_probs=95.1
Q ss_pred CeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhh------cCCCCcCcc-ccCC-ccEEEEE---cCCCC-Ccccc
Q 026987 55 GFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYI------QGKNEYEQT-IEMT-APVITEV---LPSDG-PFCES 122 (230)
Q Consensus 55 ~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI------~G~N~~~~k-I~MT-aPV~~~~---~~~~~-~~~~~ 122 (230)
+++|+.-++...+... ..+.........+|.+|+..+ ..++..... -+.+ .|...-. .+... +..+-
T Consensus 24 ~v~i~~~p~~~v~~i~-~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~~~~~~~~~~~ 102 (211)
T 3b49_A 24 KPERIFVPEMNFLMVD-GKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAW 102 (211)
T ss_dssp SCEEEEEEEEEEEEEE-EESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESSSCCTTCGGGE
T ss_pred CcEEEEECCeeEEEEE-eecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCCccccCchhhe
Confidence 5788888888888875 333222235668999999887 433221111 1111 1322111 11111 22234
Q ss_pred eEEEEEEeeCCCCC-------------CCC-CCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhh
Q 026987 123 SFTVSFYVPKVNQA-------------NPP-PAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAI 188 (230)
Q Consensus 123 ~~tmsF~lP~~~~~-------------~PP-~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~ 188 (230)
.|.+++-+|...+. .|. .+.+|.+..+|+..+++.++.|... .+.+...+|.++|.++|+...
T Consensus 103 ~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~~- 179 (211)
T 3b49_A 103 LWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRND- 179 (211)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCBC-
T ss_pred EEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCccc-
Confidence 67788888865431 222 3467999999999999999999765 467778888899998887210
Q ss_pred hhhccCCCCCceEEEEeCCCCCC-C-CceeeEEEEEe
Q 026987 189 EKRRAEDPTSSYIVAQYNSPFEF-Y-NRVNEIWLLFD 223 (230)
Q Consensus 189 ~~~~~~~~~~~~~~A~Yd~P~~~-~-~RrNEV~i~~~ 223 (230)
....+..+--.+|.|... . .-+-||+++++
T Consensus 180 -----~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~ 211 (211)
T 3b49_A 180 -----TGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 211 (211)
T ss_dssp -----BTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred -----cCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence 000133333344667643 2 33679999874
No 7
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=95.88 E-value=0.16 Score=43.03 Aligned_cols=150 Identities=9% Similarity=-0.036 Sum_probs=88.5
Q ss_pred CCeEEEEeCCeeEEEeccccCccHhHHH-HHHHHHHHhhhcCCCCcCccccCCccEEEEEcCCC-CCcccceE-EEEEEe
Q 026987 54 NGFEIRHYNSSMWMSTSPIQDISLVQAT-RTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSD-GPFCESSF-TVSFYV 130 (230)
Q Consensus 54 ~~yEiR~Y~~~~wasT~~~~~~~~~~a~-~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~-~~~~~~~~-tmsF~l 130 (230)
.+++|+..++...+... ....+. ... ...|.+|..++...+ +..+.|+.......+ .+.....+ .+++.+
T Consensus 122 ~~v~I~~~p~~~v~~~~-~~~~~~-~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~~~~~~~~~~~~~~v~v 194 (278)
T 1r8e_A 122 GEVFVLDEEEIRIIQTE-AEGIGP-ENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQPYTSIDEMTYRHIFTPV 194 (278)
T ss_dssp TCCEEEEECCEEEEEEE-CTTCCT-TTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCCCSCGGGCCCSEEEEEC
T ss_pred CceEEEEcCCeEEEEee-cCCCCh-HhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHHhhcCCCcceeEEEEEe
Confidence 46888999998877764 212222 122 467888888885432 333556544332211 11101111 244444
Q ss_pred eCCCCCCCCCCCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCC
Q 026987 131 PKVNQANPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFE 210 (230)
Q Consensus 131 P~~~~~~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~ 210 (230)
+..... -|.+.++.+..+|+..+++..+.|.. +.+.+....|.+||.++|+.. .+..+--.++.|+.
T Consensus 195 ~~~~~~-l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~----------~g~~~E~y~~~~~~ 261 (278)
T 1r8e_A 195 LTNKQI-SSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTV----------VSDVYELIIPIHYS 261 (278)
T ss_dssp CCCSCC-SSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCE----------EEEEEEEEEESCCC
T ss_pred cCcccc-ccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCcc----------CCCeEEEEeecccc
Confidence 432210 02345789999999999999999965 456777888889999998742 22333344455654
Q ss_pred C---CCceeeEEEEEe
Q 026987 211 F---YNRVNEIWLLFD 223 (230)
Q Consensus 211 ~---~~RrNEV~i~~~ 223 (230)
. ..-.-||+|+++
T Consensus 262 ~~~~~~~~teI~iPv~ 277 (278)
T 1r8e_A 262 PKKQEEYRVEMKIRIA 277 (278)
T ss_dssp SSSCCCEEEEEEEEEC
T ss_pred cCChhheEEEEEEEec
Confidence 2 234689999986
No 8
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=94.34 E-value=1.3 Score=37.28 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=51.7
Q ss_pred CCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHH-HHHhcCCchhhhhhhccCCCCCceEEEEeC----CCCCCC--C
Q 026987 141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQ-ASLAGTNWAAAIEKRRAEDPTSSYIVAQYN----SPFEFY--N 213 (230)
Q Consensus 141 p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd----~P~~~~--~ 213 (230)
++++....+|+.++||.++.|. .+.+.+-...|. +||.++|+.. .+.+.+-.|. ++.... .
T Consensus 209 ~~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~----------~~~p~~E~Y~~~~~~~~~~~~~~ 276 (292)
T 1d5y_A 209 VLTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR----------RKGQDIERYYPAEDAKAGDRPIN 276 (292)
T ss_dssp CTTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE----------CSSCEEEEECGGGC----CCSCE
T ss_pred CCcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc----------CCCCcEEEEeeccccCCCCCCCc
Confidence 4578889999999999999994 567888888886 8999888642 1223445564 333221 2
Q ss_pred ceeeEEEEEecCCCc
Q 026987 214 RVNEIWLLFDLEEGF 228 (230)
Q Consensus 214 RrNEV~i~~~~~~~~ 228 (230)
=.-||||+|+....+
T Consensus 277 ~~tEI~iPI~~k~~~ 291 (292)
T 1d5y_A 277 LRCELLIPIRRKLAA 291 (292)
T ss_dssp EEEEEEEEEECCCCC
T ss_pred eEEEEEEEeehhhcc
Confidence 246999999876543
No 9
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=91.81 E-value=1.3 Score=34.03 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=51.0
Q ss_pred CCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHH-HHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC-CCceeeE
Q 026987 141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQ-ASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF-YNRVNEI 218 (230)
Q Consensus 141 p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~-~~RrNEV 218 (230)
|+++....+|+.++||-++.|... +.+++-.+.+. ++|-++|+.. ...+-+-.|+..-.. .+-.-||
T Consensus 84 p~~~~~~~ip~g~Yavf~~~G~~~-~~i~~~~~~i~~~wlp~sgy~~----------~~~p~fE~Y~~~~~~~~~~~~ei 152 (158)
T 3lur_A 84 IAKYDVITLASSKYMVFEAQGAVP-KAVQQKMEEVHHYIHQYQANTV----------KSAPFFELYQDGDTTSEKYITEI 152 (158)
T ss_dssp GGGSEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHHHHCTTTB----------CSSCEEEEECSSCTTSTTCEEEE
T ss_pred CCCcEEEEECCceEEEEEEecChH-HHHHHHHHHHHHhhcccCCCee----------CCCccEEEECCCCCCCcceEEEE
Confidence 467888999999999999999653 45666666655 5798888642 223556678764322 3456799
Q ss_pred EEEEec
Q 026987 219 WLLFDL 224 (230)
Q Consensus 219 ~i~~~~ 224 (230)
||+++.
T Consensus 153 ~iPI~~ 158 (158)
T 3lur_A 153 WMPVKG 158 (158)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999863
No 10
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=90.10 E-value=3.7 Score=32.25 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=47.6
Q ss_pred CCCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCC--chhhhhhhccCCCCCceEEEEeCCCCCCCCceeeE
Q 026987 141 AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTN--WAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEI 218 (230)
Q Consensus 141 p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV 218 (230)
|+++....+|+.++||-++.|... +.+++-.+.+..+|-..| +.. ...+-+-.|+... .-||
T Consensus 102 p~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~~----------~~~pdfE~Y~~~~-----~~eI 165 (170)
T 3gk6_A 102 LSESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHKR----------AYTTDFEYYKSAN-----TVEI 165 (170)
T ss_dssp STTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCCB----------CCSEEEEECCSSS-----EEEE
T ss_pred CCCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCccee----------cCcCCEEEECCCC-----eEEE
Confidence 578899999999999999999543 467777777777998877 531 2245666776542 6799
Q ss_pred EEEEe
Q 026987 219 WLLFD 223 (230)
Q Consensus 219 ~i~~~ 223 (230)
||+|+
T Consensus 166 ~IpI~ 170 (170)
T 3gk6_A 166 SIAVR 170 (170)
T ss_dssp EEEBC
T ss_pred EEEEC
Confidence 99985
No 11
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=78.63 E-value=10 Score=28.48 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=46.8
Q ss_pred CceEEEecCeEEEEEEecCcCCh--hhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCCCCceeeEEE
Q 026987 143 GLHIQQWKATYAAVRQFSGFVSD--SNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWL 220 (230)
Q Consensus 143 ~V~I~~~p~~~vaV~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~RrNEV~i 220 (230)
+|+|+++|+..++..+..|...+ ..+.+...+|.+++..+|+. ..+..+...|| +....=+=|+.+
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~----------~~g~~~~iy~d--~~~~~~~~~~~~ 75 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS----------PSGPPFARYFG--MSAGTFEVEFGF 75 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC----------CSSCCEEEEES--CTTSCEEEEEEE
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC----------CCCCeEEEEec--CCCcceEEEEEE
Confidence 58999999999999999997422 23445567788888877753 12333444445 222344578888
Q ss_pred EEecC
Q 026987 221 LFDLE 225 (230)
Q Consensus 221 ~~~~~ 225 (230)
.+...
T Consensus 76 ~v~~~ 80 (158)
T 3e0h_A 76 PVEGG 80 (158)
T ss_dssp ECCSC
T ss_pred EeCCC
Confidence 87654
No 12
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=65.29 E-value=20 Score=28.76 Aligned_cols=44 Identities=7% Similarity=-0.182 Sum_probs=37.1
Q ss_pred CCceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHH------hcCCch
Q 026987 142 KGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASL------AGTNWA 185 (230)
Q Consensus 142 ~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L------~~~g~~ 185 (230)
.+|.|.++|+..++.++..|.+.+..+.+...+|..++ .++|+.
T Consensus 23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~ 72 (211)
T 3b49_A 23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETR 72 (211)
T ss_dssp SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56999999999999999888766557888899999999 877764
No 13
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=53.24 E-value=58 Score=23.10 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=45.1
Q ss_pred CceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC--CCceeeEEE
Q 026987 143 GLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF--YNRVNEIWL 220 (230)
Q Consensus 143 ~V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~--~~RrNEV~i 220 (230)
+++|.+.|+..++..+..|... ..+.+..++|.+++..+++. ....+...+|.|... ..=+-++.+
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~~-----------~~~~~gi~~~~~~~~~~~~~~~~~~~ 69 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV-----------PKEWVAVYYDNPDETPAEKLRCDTVV 69 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC-----------CSEEEEEECSCTTTSCGGGCEEEEEE
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCCC-----------CCcEEEEECCCCCCCCHHHheEEEEE
Confidence 4789999999999888888542 35666778888888766642 123334456666632 122456767
Q ss_pred EEec
Q 026987 221 LFDL 224 (230)
Q Consensus 221 ~~~~ 224 (230)
.+..
T Consensus 70 ~v~~ 73 (157)
T 1jyh_A 70 TVPG 73 (157)
T ss_dssp EECT
T ss_pred EecC
Confidence 7654
No 14
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=44.45 E-value=32 Score=28.39 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=44.1
Q ss_pred CCceEEEecCeEEEEEEe-cCcCChhhH-HHHHHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCCC-Ccee-e
Q 026987 142 KGLHIQQWKATYAAVRQF-SGFVSDSNI-GEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFY-NRVN-E 217 (230)
Q Consensus 142 ~~V~I~~~p~~~vaV~~F-~G~~~~~~~-~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~~-~RrN-E 217 (230)
.+|.|...|+..++..+. .|.. ..+ .+...+|.+++.++|+. ..+.+.+..+|++++.. .+.. +
T Consensus 122 ~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l~----------~~~~~g~~~~~~~~~~~~~~~~~~ 189 (278)
T 1r8e_A 122 GEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADGF----------TNNSYGATFSFQPYTSIDEMTYRH 189 (278)
T ss_dssp TCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHSS----------CCCCEEEEECCCCCSCGGGCCCSE
T ss_pred CceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCCc----------ccCceEEEEEhHHhhcCCCcceeE
Confidence 469999999999998887 5533 222 34456677888765532 23345444555566542 3333 6
Q ss_pred EEEEEecC
Q 026987 218 IWLLFDLE 225 (230)
Q Consensus 218 V~i~~~~~ 225 (230)
+.+.+...
T Consensus 190 ~~v~v~~~ 197 (278)
T 1r8e_A 190 IFTPVLTN 197 (278)
T ss_dssp EEEECCCC
T ss_pred EEEEecCc
Confidence 88887653
No 15
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=32.31 E-value=64 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=32.6
Q ss_pred ceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhcCC
Q 026987 144 LHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTN 183 (230)
Q Consensus 144 V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~~g 183 (230)
+.|....+..+...+.+|..+.+++.+-...|.+.|++++
T Consensus 11 i~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~ 50 (126)
T 2q3l_A 11 IGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK 50 (126)
T ss_dssp EEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC
T ss_pred EEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC
Confidence 5666677777778899999999999998888888888654
No 16
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=28.62 E-value=1.6e+02 Score=20.84 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEeec---CCeEEEEeCCeeEEEeccccCccHhHHHHHHHHHHHhhhcCCCCcCccccCCcc
Q 026987 40 NRIECPSFETVHVG---NGFEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAP 107 (230)
Q Consensus 40 ~~~e~P~Y~vl~~~---~~yEiR~Y~~~~wasT~~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaP 107 (230)
++...|.|+++... ..|.+.-+=......+ ..+.+-..|...|=+..+..|.. .-...|....|
T Consensus 29 ~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~--G~G~SKK~Aeq~AA~~AL~~L~~--~~~~~~~~~~~ 95 (98)
T 1x47_A 29 VLKVRPVYNFFECENPSEPFGASVTIDGVTYGS--GTASSKKLAKNKAARATLEILIP--DFVKQTSESGP 95 (98)
T ss_dssp HTCSCCEEEEEECSSSSCCEEEEEEETTEEEEE--EEESSHHHHHHHHHHHHHHHHCS--SSSCCCSSSCS
T ss_pred cCCCCCeEEEEEeECCCCcEEEEEEECCEEEEE--eeeCCHHHHHHHHHHHHHHHHHh--hhhhhhhhcCC
Confidence 45678999999754 2355555544433322 23455666766655555555543 22334555554
No 17
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=27.93 E-value=1e+02 Score=22.59 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=31.7
Q ss_pred ceEEEecCeEEEEEEecCcCChhhHHHHHHHHHHHHhc
Q 026987 144 LHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAG 181 (230)
Q Consensus 144 V~I~~~p~~~vaV~~F~G~~~~~~~~~~~~~L~~~L~~ 181 (230)
+.|....+..+...+.+|..+.+++.+-...|.+.|++
T Consensus 11 i~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 11 IGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 55566667777778999999999999888888889988
No 18
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=24.90 E-value=89 Score=24.24 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=44.2
Q ss_pred CCCCCCCceEEEecCeEEEEEEecCcCChhhHHHH---HHHHHHHHhcCCchhhhhhhccCCCCCceEEEEeCCCCCC
Q 026987 137 NPPPAKGLHIQQWKATYAAVRQFSGFVSDSNIGEE---AAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEF 211 (230)
Q Consensus 137 ~PP~p~~V~I~~~p~~~vaV~~F~G~~~~~~~~~~---~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~A~Yd~P~~~ 211 (230)
.|.++.++.+...++..-+..--.|...+++.+.. .+-|.+.|+++|+. ..+..++|.||+-..+
T Consensus 75 ~~~t~~dl~~~~~~~~~~~~lI~DG~I~~~~L~~~~~de~WL~~eLk~~g~~----------~~~dVf~a~~~~~g~l 142 (153)
T 3c6f_A 75 DKPTNKDMQIPSKSVSLPITLIIDGEIVRDNLKEAGVDEQWLKQEMKKKNID----------KTEDVLFAEWHKNKPL 142 (153)
T ss_dssp SCCCTTTTTCCCCCCCCCEEEEETTEECHHHHHHHSCCHHHHHHHHHHTTCC----------SGGGEEEEEECTTSCC
T ss_pred CCCCHHHcCccccccCCCeeEEECCEecHHHHhhcCCCHHHHHHHHHHcCCC----------CHHHEEEEEEecCCcE
Confidence 45666666665434333344567899888776654 67899999998853 2457889999986554
Done!