BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026988
(230 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255577536|ref|XP_002529646.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223530872|gb|EEF32733.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1206
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 8/175 (4%)
Query: 41 EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
+G +SSC +N V E+K LEGL +LL ED VLQR+ ML+K+GA V V DG A
Sbjct: 1036 KGQTSSC-LNK---SVKEQKALEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQA 1091
Query: 101 VEAMTLMINA--AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
V+A+ ++ + + Q+ ++ S E + P YDLILMDCQM MDG +AT+ IR+
Sbjct: 1092 VDALNCRLSGRESRRESVFQDENNTSQTEMLDPPPYDLILMDCQMPKMDGYEATKAIRK- 1150
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+EA +G IPI+A TA + +E +C GMD +L KP L+ + I+ R
Sbjct: 1151 -SEAGSGLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKR 1204
>gi|224133676|ref|XP_002327653.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222836738|gb|EEE75131.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1258
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+++K L+GL +LL ED VLQR+ ML+K+GA V V DG AVEA+ +++ +
Sbjct: 1100 NQQKALDGLRILLAEDTPVLQRVATIMLEKMGAKVIAVGDGLQAVEALNCVLSEKDLKRE 1159
Query: 117 I--QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+ G + SP YDLILMDCQM MDG +AT+ IR+ +EA TG IPI+A T
Sbjct: 1160 SPGDDGERGLQTDIQESPPYDLILMDCQMPKMDGYEATKAIRK--SEAGTGFHIPIVALT 1217
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
A + +E +C GMD +L KP L+ + I+ R +
Sbjct: 1218 AHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRTT 1258
>gi|449495060|ref|XP_004159723.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1222
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 98/177 (55%), Gaps = 22/177 (12%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P+++G S S ++V G KK LEGL +LL ED VLQR+ ML+++GA V DG
Sbjct: 1067 PKSQGESHS----NNVQG---KKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDG 1119
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
AVEA+T M++A + + YDLILMDCQM MDG +AT+ IR+
Sbjct: 1120 LQAVEALTAMLSAEEQRREFPT-------------RYDLILMDCQMPKMDGYEATKAIRK 1166
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
L E T IPI+A TA + +E +C GMD +L KP L+ + I+ R+
Sbjct: 1167 L--EVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRR 1221
>gi|449456825|ref|XP_004146149.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1221
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 98/177 (55%), Gaps = 22/177 (12%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P+++G S S ++V G KK LEGL +LL ED VLQR+ ML+++GA V DG
Sbjct: 1066 PKSQGESHS----NNVQG---KKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDG 1118
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
AVEA+T M++A + + YDLILMDCQM MDG +AT+ IR+
Sbjct: 1119 LQAVEALTAMLSAEEQRREFPT-------------RYDLILMDCQMPKMDGYEATKAIRK 1165
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
L E T IPI+A TA + +E +C GMD +L KP L+ + I+ R+
Sbjct: 1166 L--EVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRR 1220
>gi|357483831|ref|XP_003612202.1| Histidine kinase osmosensor protein [Medicago truncatula]
gi|355513537|gb|AES95160.1| Histidine kinase osmosensor protein [Medicago truncatula]
Length = 1218
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 8/157 (5%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V++KK LEGL +LL ED V+QR+ ML+K+GA V V DG+ AV+A+ M A+ ++
Sbjct: 1059 VNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYM--ASAEDC 1116
Query: 116 QIQNLHHGSNLETHNSP----HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
+ ++L N + YDLILMDCQM MDG +AT+ IR+ +E TG+ IPI+
Sbjct: 1117 RRESLQKDRNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKEIRK--SEEGTGKHIPIV 1174
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1175 ALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTIL 1211
>gi|225431092|ref|XP_002265248.1| PREDICTED: histidine kinase 1-like [Vitis vinifera]
Length = 1235
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 45 SSCPV--NDDVTG--VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
S+CP + +G V+ +K LEGL +LL ED VLQR+ ML+K+GA V V DG A
Sbjct: 1061 STCPKEHGNSYSGKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQA 1120
Query: 101 VEAMTLMINAAGKNHQ--IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
V+A+ M A + +Q+ + H+S YDLILMDCQM MDG +AT+ IR+
Sbjct: 1121 VDALKCMPGAEESRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRK- 1179
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+E T IPI+A TA + +E +C GMD +L KP L+ + I+ R
Sbjct: 1180 -SEEGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKR 1233
>gi|297734988|emb|CBI17350.3| unnamed protein product [Vitis vinifera]
Length = 1168
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 45 SSCPV--NDDVTG--VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
S+CP + +G V+ +K LEGL +LL ED VLQR+ ML+K+GA V V DG A
Sbjct: 994 STCPKEHGNSYSGKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQA 1053
Query: 101 VEAMTLMINAAGKNHQ--IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
V+A+ M A + +Q+ + H+S YDLILMDCQM MDG +AT+ IR+
Sbjct: 1054 VDALKCMPGAEESRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRK- 1112
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+E T IPI+A TA + +E +C GMD +L KP L+ + I+ R
Sbjct: 1113 -SEEGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKR 1166
>gi|18398532|ref|NP_565424.1| histidine kinase 1 [Arabidopsis thaliana]
gi|332278154|sp|Q9SXL4.2|AHK1_ARATH RecName: Full=Histidine kinase 1; AltName: Full=Arabidopsis histidine
kinase 1; Short=AtHK1; AltName: Full=Protein AUTHENTIC
HIS-KINASE 1
gi|330251597|gb|AEC06691.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 10/158 (6%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM-INAAG----- 112
+K LEG+ +LL ED VLQR+ ML+K+GA VT V DG+ AV+++ INA
Sbjct: 1038 QKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSINAQAPTEEH 1097
Query: 113 KNHQIQNLHHGSNLET--HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
K+ + + + + ET NS YDLILMDCQM MDG +AT+ IRR AE T IPI
Sbjct: 1098 KSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRR--AEIGTELHIPI 1155
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1156 VALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1193
>gi|4586626|dbj|BAA32085.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 10/158 (6%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM-INAAG----- 112
+K LEG+ LL ED VLQR+ ML+K+GA VT V DG+ AV+++ INA
Sbjct: 1038 QKSLEGIRFLLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSINAQAPTEEH 1097
Query: 113 KNHQIQNLHHGSNLET--HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
K+ + + + + ET NS YDLILMDCQM MDG +AT+ IRR AE T IPI
Sbjct: 1098 KSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRR--AEIGTELHIPI 1155
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1156 VALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1193
>gi|60545052|gb|AAQ10680.2| cold inducible histidine kinase 1 [Catharanthus roseus]
Length = 1205
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 92/167 (55%), Gaps = 20/167 (11%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
T +E+K L+GL +LL ED VLQR+ ML+KLGA V V DG AV+A+ M ++
Sbjct: 1048 TLWNEQKSLDGLRILLAEDTPVLQRVATIMLEKLGAKVVAVGDGLQAVDALRFMFDS--- 1104
Query: 114 NHQIQNLHHGSNLET-------HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
+ SNLE+ S Y LILMDCQM MDG AT+ IR+ +E TG
Sbjct: 1105 --------NQSNLESPEEDVINSTSLPYHLILMDCQMPKMDGYAATKAIRK--SEMGTGL 1154
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
IPI+A TA + +E +C GMD +L KP L+ + I+ R
Sbjct: 1155 HIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSLTRR 1201
>gi|62433091|emb|CAI78447.1| osmosensor histidine-aspartate kinase [Populus x canadensis]
Length = 1249
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+++K L+GL +LL ED VLQR+ ML+K+GA V V DG AVEA+ ++ +
Sbjct: 1091 NQQKALDGLRILLAEDTPVLQRVATIMLEKMGAKVITVGDGLQAVEALNCSLSEKDCRRE 1150
Query: 117 IQNLHHGSNLET--HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+ L+T S YDLILMDCQM MDG +AT+ IR+ +E T IPI+A T
Sbjct: 1151 SPGNDGNTGLQTDIQESQSYDLILMDCQMPKMDGYEATKAIRK--SETGTDLHIPIVALT 1208
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
A + +E +C GMD +L KP L+ + I+ RK+
Sbjct: 1209 AHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTRRKA 1249
>gi|224071327|ref|XP_002303406.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222840838|gb|EEE78385.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1149
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+++K L+GL +LL ED VLQR+ ML+K+GA V V DG AVEA+ ++ +
Sbjct: 991 NQQKALDGLRILLAEDTPVLQRVATIMLEKMGAKVITVGDGLQAVEALNCSLSEKDCRRE 1050
Query: 117 IQNLHHGSNLET--HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+ L+T S YDLILMDCQM MDG +AT+ IR+ +E T IPI+A T
Sbjct: 1051 SPGNDGNTGLQTDIQESQSYDLILMDCQMPKMDGYEATKAIRK--SETGTDLHIPIVALT 1108
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
A + +E +C GMD +L KP L+ + I+ RK+
Sbjct: 1109 AHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTRRKA 1149
>gi|357517985|ref|XP_003629281.1| Histidine kinase [Medicago truncatula]
gi|355523303|gb|AET03757.1| Histidine kinase [Medicago truncatula]
Length = 1173
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 102/184 (55%), Gaps = 13/184 (7%)
Query: 36 IIPQAEGSSSSCPVNDDVTG----VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
I +A+G S V+G ++ KK LEGL +LL ED AV+QR+ ML+K+GA V
Sbjct: 996 ISTRAKGEDSKGGETSRVSGSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATV 1055
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
V DG+ AV+A+ M ++ S E + P YDLILMDCQM MDG +A
Sbjct: 1056 VAVGDGQQAVDALNGMPG-------VERNTITSQTEILSFPSYDLILMDCQMPKMDGYEA 1108
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
T+ IR+ +E T IPI+A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1109 TKEIRK--SEIGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLT 1166
Query: 212 ARKS 215
R++
Sbjct: 1167 KRET 1170
>gi|302793927|ref|XP_002978728.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
gi|300153537|gb|EFJ20175.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
Length = 1086
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 89/157 (56%), Gaps = 15/157 (9%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D G + + L G+ +LL ED V+Q++ + +LKKLGA V V DG+AAVEA +
Sbjct: 936 DEEGKEPRASLTGIHILLAEDTPVIQKVAVVLLKKLGATVVAVADGQAAVEAW----KGS 991
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
K+H + ++ P +DLILMDCQM MDG ATR IR+ AE +G +PI+
Sbjct: 992 LKDHAV--------VDEERKP-FDLILMDCQMPRMDGYGATREIRK--AEEGSGSHVPIV 1040
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
A TA + +E C GMD +L KP L+A I+
Sbjct: 1041 ALTAHAMSSDEERCLEVGMDAYLTKPIDCKLMATTIL 1077
>gi|297836494|ref|XP_002886129.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
gi|297331969|gb|EFH62388.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
Length = 1194
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM-INA------- 110
+K LEG+ +LL ED VLQR+ ML+K+GA VT V DG+ AV+++ IN
Sbjct: 1025 QKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYRSINVQDPTGEP 1084
Query: 111 AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
+ N NS YDLILMDCQM MDG AT+ IRR AE T IPI
Sbjct: 1085 TSSEEETANNSINPQSSLRNSSPYDLILMDCQMPKMDGYDATKAIRR--AEIGTELHIPI 1142
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1143 VALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1180
>gi|356502102|ref|XP_003519860.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1193
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
V KK LEGL +LL ED V+QR+ ML+K+GA V V DG AV+A+ M
Sbjct: 1032 AVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGRQAVDALNGMSGVEDCR 1091
Query: 115 HQI---QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
+ + S E + P YDLILMDCQM MDG +AT+ IR+ +E TG IPI+
Sbjct: 1092 RETLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKAIRK--SEEGTGLHIPIV 1149
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1150 ALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTIL 1186
>gi|356561130|ref|XP_003548838.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1197
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM--INAAGKNHQ 116
KK LEGL +LL ED V+QR+ ML+K+GA V V DG+ AV+A+ M + +
Sbjct: 1040 KKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNGMPGVEDCIRESL 1099
Query: 117 IQNLH-HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
++ + S E P YDLILMDCQM MDG +AT+ IR+ +E T IPI+A TA
Sbjct: 1100 LKERNTRSSQTEILGCPPYDLILMDCQMPKMDGYEATKAIRK--SEVGTDLHIPIVALTA 1157
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ +E +C GMD +L KP L+ + I+ R S
Sbjct: 1158 HAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTS 1197
>gi|302787437|ref|XP_002975488.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
gi|300156489|gb|EFJ23117.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
Length = 1086
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 15/152 (9%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+ + L G+ +LL ED V+Q++ + +LKKLGA V V DG+AAVEA
Sbjct: 941 EPRASLTGIHILLAEDTPVIQKVAVVLLKKLGATVVAVADGQAAVEAWK----------- 989
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+L + ++ P +DLILMDCQM MDG ATR IR+ AE +G +PI+A TA
Sbjct: 990 -GSLKDQAVVDEERKP-FDLILMDCQMPRMDGYGATREIRK--AEEGSGSHVPIVALTAH 1045
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+ +E C GMD +L KP L+A I+
Sbjct: 1046 AMSSDEERCLEVGMDAYLTKPIDCKLMATTIL 1077
>gi|168003958|ref|XP_001754679.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
gi|162694300|gb|EDQ80649.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1189
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL- 120
L G+ +LL ED VL ++ ML+K+GA V V DG AVE + G++ + QN+
Sbjct: 1043 LAGIRILLAEDTPVLAKVATIMLEKMGARVVAVGDGLQAVETI-------GRSREAQNVA 1095
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G + +DL+LMDCQM MDG +AT+ IR+ AE +P++A TA +
Sbjct: 1096 ETGESTTPPTVDKFDLVLMDCQMPRMDGYEATKAIRK--AEEGKDWHLPVVALTAHAMSS 1153
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIV 208
+E +C GMD +L KP L+ + I+
Sbjct: 1154 DEAKCLQVGMDAYLTKPIDSKLMVSTIL 1181
>gi|88798780|ref|ZP_01114363.1| histidine kinase DhkJ [Reinekea blandensis MED297]
gi|88778543|gb|EAR09735.1| histidine kinase DhkJ [Reinekea blandensis MED297]
Length = 719
Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 76/145 (52%), Gaps = 27/145 (18%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E VLL ED + Q++ +RML++ G V +G A+E +
Sbjct: 596 ENSRVLLAEDNLLNQKVVLRMLEQTGVQVDTCVNGREAIEKL------------------ 637
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+ HYDL+LMDC M +DG +ATR+IR+ E TGQ IPI+A T+ T + E
Sbjct: 638 -------KTNHYDLVLMDCYMPRLDGLEATRLIRK--DEINTGQHIPIVAMTSEQTPEVE 688
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
REC +GMD FL KP Q LL A+
Sbjct: 689 RECLAAGMDDFLGKPLQRDLLVGAL 713
>gi|242034271|ref|XP_002464530.1| hypothetical protein SORBIDRAFT_01g020200 [Sorghum bicolor]
gi|241918384|gb|EER91528.1| hypothetical protein SORBIDRAFT_01g020200 [Sorghum bicolor]
Length = 755
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 43 SSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102
SSSS P DD E+K L G VLLVED LQ IG ++L +LGA V + +DG AV
Sbjct: 587 SSSSEPKRDD-----EEKSLTGRRVLLVEDTLTLQTIGKKILYQLGADVAVAEDGAKAVS 641
Query: 103 AMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEA 162
+ A K GS ++ S YD+ILMDCQM MDG +ATR IR +E+
Sbjct: 642 MFEAALAQANKA--------GSRMDAAASTPYDVILMDCQMPVMDGYEATRRIREVESCY 693
Query: 163 ETGQSIPIIAFTALVTADNE--RECFNSGMDTFLNKPAQEHLLAAAI 207
+ PIIA TA D E ++ +GMD L KP + +A AI
Sbjct: 694 GVVHT-PIIALTAHAMEDEEQWQKTIAAGMDLHLTKPMERRSIAEAI 739
>gi|403412139|emb|CCL98839.1| predicted protein [Fibroporia radiculosa]
Length = 1074
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 74/140 (52%), Gaps = 25/140 (17%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E KV E VLLVED + QR+G R+L+KLG VT V +G+ A++A++ +
Sbjct: 940 ETKVKEKEKVLLVEDNLINQRLGRRLLEKLGYDVTAVNNGQQAIDAVSEI---------- 989
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
Y LMDCQM +DG ATR IR LE E +PIIA TA V
Sbjct: 990 ---------------SYYCCLMDCQMPVVDGFTATRKIRALEQEGVLPGHLPIIALTANV 1034
Query: 178 TADNERECFNSGMDTFLNKP 197
T D+E C +GMD FL KP
Sbjct: 1035 TTDSEDRCRQAGMDHFLPKP 1054
>gi|440799309|gb|ELR20364.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 684
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 27/163 (16%)
Query: 50 NDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMIN 109
+ + +G D ++ +GL VLLVED + Q++G RML L VT+ +GE + A+
Sbjct: 492 SSNTSGADGER-FQGLRVLLVEDNVINQKVGKRMLSTLACDVTVANNGEECLNAL----- 545
Query: 110 AAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ--- 166
G +L+ +D++LMDCQM MDG +AT+ IR EA+ E G
Sbjct: 546 -------------GESLDA-----FDIVLMDCQMPVMDGFQATKCIREKEAQREQGDPQP 587
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
S+PI+A TA T + + C GM L KP + LAAA+ +
Sbjct: 588 SLPIVALTASATTEYAQRCLEVGMSDVLFKPLRRETLAAALAK 630
>gi|440803723|gb|ELR24606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 666
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 81/152 (53%), Gaps = 23/152 (15%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVED + Q +G RML LG VT+V +G V Q L GS
Sbjct: 395 LEVLLVEDNPINQLVGKRMLHSLGCNVTVVANGLECV----------------QMLARGS 438
Query: 125 N-LETHN-SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-----SIPIIAFTALV 177
+ +E S YD+ILMDCQM MDG KAT+ IR LE +AE S+PIIA TA
Sbjct: 439 DEVEGEKASTMYDIILMDCQMPVMDGFKATQHIRALEMKAEGAARHGSPSLPIIALTASA 498
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
T + R+C GM L KP + +LAAA+ +
Sbjct: 499 TKEYSRKCVEVGMSDVLFKPLRREMLAAALAK 530
>gi|168015329|ref|XP_001760203.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
gi|162688583|gb|EDQ74959.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1191
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ +LL ED VL ++ ML+K+GA V V DG AVE + G++ + H
Sbjct: 1045 LAGIRILLAEDTPVLAKVATIMLEKMGACVVAVGDGLQAVETI-------GRS---RGEH 1094
Query: 122 HGSNLETHNSPH----YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+ + E +P +DL+LMDCQM MDG +AT+ IR+ AE +P++A TA
Sbjct: 1095 NVGDTEESTTPAEIDGFDLVLMDCQMPRMDGYEATKAIRK--AEEGKNWHLPVVALTAHA 1152
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+ +E +C GMD +L KP L+ + I+
Sbjct: 1153 MSSDEAKCLQVGMDAYLTKPIDSKLMVSTIL 1183
>gi|262197751|ref|YP_003268960.1| histidine kinase [Haliangium ochraceum DSM 14365]
gi|262081098|gb|ACY17067.1| histidine kinase [Haliangium ochraceum DSM 14365]
Length = 678
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 91/189 (48%), Gaps = 35/189 (18%)
Query: 23 LQLEFKPVPVTNN----IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQR 78
L +E KP +N ++P A G S +D G DE ++ G VLLVED V +R
Sbjct: 515 LGIESKPGEGSNFWFEVVLPVARGEVSEQG-GEDERGFDEARI-RGARVLLVEDNMVSRR 572
Query: 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138
I RML+K+G VTL G VEA LE +D+IL
Sbjct: 573 IAQRMLQKVGCDVTLAGHG---VEA----------------------LERAAEARFDIIL 607
Query: 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198
MDCQM MDG ATR +R+ E E T P+IA TA D+ + C +GMD +L KP
Sbjct: 608 MDCQMPVMDGITATRELRKREHEHHT----PVIALTADAHEDSRKRCLEAGMDDYLRKPV 663
Query: 199 QEHLLAAAI 207
+ L AI
Sbjct: 664 GKDSLCRAI 672
>gi|440792781|gb|ELR13989.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 1384
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 25/161 (15%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ----- 116
L+G VLLVED V Q++G+RML LG + +G AV A+ +A + H
Sbjct: 1200 LKGKRVLLVEDNQVNQKVGVRMLNSLGCEAIVAANGLEAVNAVERHYDAGIREHADGPDR 1259
Query: 117 -------IQNLHHGSNLETH----NSPHYDLILMDCQMGSMDGCKATRVIRRLE---AEA 162
+GS+ H + H DL+LMDCQM MDG KAT IR+LE E
Sbjct: 1260 KTDAGEPASEKENGSDESNHEKERRANHIDLVLMDCQMPVMDGFKATARIRKLERQIGEQ 1319
Query: 163 ETGQS------IPIIAFTALVTADNERECFNSGMDTFLNKP 197
++G + IPI+A TA T + +++C GMD FL+KP
Sbjct: 1320 QSGDAGAATPHIPILALTASATTEYQQKCARQGMDDFLSKP 1360
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 27/127 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
LEG +LL ED V Q++G+RML+ LG + +G A+ AM + G
Sbjct: 530 LEGRRILLAEDNIVNQKVGVRMLRALGCQPVVAVNGAEALSAMKRHYDCLGA-------- 581
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE--------AEAET-----GQSI 168
DL+LMDCQM MDG AT IR+LE AEA+ G
Sbjct: 582 ------ADPEDRIDLVLMDCQMPIMDGFTATEEIRKLEEHTRSEKPAEADAWSSSCGGDP 635
Query: 169 PIIAFTA 175
P +A TA
Sbjct: 636 PPLALTA 642
>gi|55771375|dbj|BAD72542.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
gi|118790664|tpd|FAA00247.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|125554320|gb|EAY99925.1| hypothetical protein OsI_21926 [Oryza sativa Indica Group]
Length = 1048
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 15/152 (9%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+E + L+G+ VLLVED VLQ I +ML +LGA V L DG AV+ I A
Sbjct: 903 EEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDGAKAVDMFRDAIERA----- 957
Query: 117 IQNLHHGSNLETHNSP-HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
S E H+ P YD+I MDCQM MDG +ATR IR E E+ G PIIA TA
Sbjct: 958 -------SVSEEHSVPLPYDVIFMDCQMPRMDGYEATRRIR--EEESRYGIRTPIIALTA 1008
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
D+ ++ + GMD + KP + + A+
Sbjct: 1009 HSMEDDLQKAIDVGMDLHMTKPIERRRIVEAV 1040
>gi|125596271|gb|EAZ36051.1| hypothetical protein OsJ_20358 [Oryza sativa Japonica Group]
Length = 1024
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 15/152 (9%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+E + L+G+ VLLVED VLQ I +ML +LGA V L DG AV+ I A
Sbjct: 879 EEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDGAKAVDMFRDAIERA----- 933
Query: 117 IQNLHHGSNLETHNSP-HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
S E H+ P YD+I MDCQM MDG +ATR IR E E+ G PIIA TA
Sbjct: 934 -------SVSEEHSVPLPYDVIFMDCQMPRMDGYEATRRIR--EEESRYGIRTPIIALTA 984
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
D+ ++ + GMD + KP + + A+
Sbjct: 985 HSMEDDLQKAIDVGMDLHMTKPIERRRIVEAV 1016
>gi|449541523|gb|EMD32506.1| histidine kinase [Ceriporiopsis subvermispora B]
Length = 811
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 25/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V QR+G R+L+KLG VT DG+ AVE +
Sbjct: 686 VLLVEDNLVNQRLGCRLLEKLGYEVTTADDGQQAVELL---------------------- 723
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+S + LMDCQM +DG ATR IR LE + +P++A TA VT+++E EC
Sbjct: 724 ---HSTTFQACLMDCQMPVLDGFSATRKIRELEKDGILSGHLPVVALTANVTSESEDECR 780
Query: 187 NSGMDTFLNKP 197
++GMD FL KP
Sbjct: 781 SAGMDHFLPKP 791
>gi|343497024|ref|ZP_08735107.1| putative two-component sensor [Vibrio nigripulchritudo ATCC 27043]
gi|342820193|gb|EGU55020.1| putative two-component sensor [Vibrio nigripulchritudo ATCC 27043]
Length = 747
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 27/148 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVEDQ Q + +ML++LG V+L ++G AV +
Sbjct: 604 LKVLLVEDQVSNQVVMKKMLERLGVEVSLAENGRVAVSKCAI------------------ 645
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYDL+LMDCQM MDG +AT IR++EA + +PI+A TA V A+ ++
Sbjct: 646 -------EHYDLVLMDCQMPVMDGFEATYSIRKMEASSSL--RVPIVALTANVLAEEKKR 696
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIA 212
CF GMD F++KP L+ + + +A
Sbjct: 697 CFEVGMDGFVSKPVNLSKLSTVLRKHVA 724
>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1099
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 30/166 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED V Q++ + +L+KLG V +V DG A+EA+ L+
Sbjct: 851 LRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLL----------------- 893
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YD++LMD QM MDG +ATR IR L A IPI+A TA +++
Sbjct: 894 --------PYDVVLMDVQMPEMDGLEATRAIRSL---ASAAARIPIVAMTANAMRGDDQM 942
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQDEK 230
CF++GMD +++KP H LA A+ + K + E AQD K
Sbjct: 943 CFDAGMDGYISKPIDRHKLAEALAKYSGAPEPKPA--EPTSAQDSK 986
>gi|224125030|ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222857861|gb|EEE95408.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1001
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 13/152 (8%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L G +VL+VED +LQR+ +LKKLGA V + +G+ A + ++ ++ K
Sbjct: 861 KPLNGKNVLVVEDSMLLQRLTSSVLKKLGASVEVCTNGKEAFDEVSKSLSDQKK------ 914
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
G ++ S YD+I MDC+M M+G +ATR+IR +E E +G IPIIA TA
Sbjct: 915 --EGDSI----SLPYDIIFMDCEMPVMNGFEATRLIR-MEEEQYSGVHIPIIALTAHAMP 967
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ + F++GMD L KP +E + I+ +
Sbjct: 968 EQTSKVFDAGMDFHLTKPLEERKMLEVILSIV 999
>gi|440790602|gb|ELR11883.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 561
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 26/155 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
EG+ VLLVED V Q++G R+L+++G V + ++G+ ++ +
Sbjct: 428 FEGMKVLLVEDNVVNQKVGRRLLERIGCDVHVAENGQECIDML----------------- 470
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ LI MDCQM +DG +ATR IR +E + G++ PI+A TA +
Sbjct: 471 --------ERESFSLIFMDCQMPVLDGYEATRRIREMERAEQRGRT-PIVALTASCVKSD 521
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+ C +SGMD +++KP + L A+++ + R H
Sbjct: 522 RQVCLDSGMDDWMSKPFDQGALCRALLKWVPRPPH 556
>gi|443475298|ref|ZP_21065252.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019888|gb|ELS33917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1481
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 21 HGLQLEFKPVPVTNNIIPQAEG---SSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQ 77
H L+ K + + N+II +G + P DD +D V L +L+ ED + Q
Sbjct: 1154 HYLRKPVKKIRLLNSIINSIKGLPPDLAIVPSKDDNQSLD-PIVTSKLKILVAEDSPINQ 1212
Query: 78 RIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137
++ I L LG +V +G+ +E + QI HYD+I
Sbjct: 1213 KVAINQLLNLGYSADVVGNGKEVLELV----------EQI---------------HYDMI 1247
Query: 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
LMDCQM +DG TR +R LE++A+ + I IIA TA D+ C +GMD +L+KP
Sbjct: 1248 LMDCQMPILDGYVTTRKLRDLESKADERRPIVIIALTANAMKDDRDRCLAAGMDDYLSKP 1307
Query: 198 AQEHLLAAAI 207
++ LAA I
Sbjct: 1308 LRKEELAAMI 1317
>gi|358448708|ref|ZP_09159208.1| integral membrane sensor hybrid histidine kinase [Marinobacter
manganoxydans MnI7-9]
gi|357227085|gb|EHJ05550.1| integral membrane sensor hybrid histidine kinase [Marinobacter
manganoxydans MnI7-9]
Length = 647
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 48 PVNDDVTGVDEKKVLEGLS-VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
P++ + TG ++ + G S L+VED V QR+ MLK+LG +G+ A++ +T
Sbjct: 505 PIDPEPTGTPPRETINGTSHALVVEDNPVNQRVATAMLKRLGFHTDSANNGKEALDRVT- 563
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE-AEAETG 165
NH YD+ILMDCQM MDG +ATR IR E + A+ G
Sbjct: 564 ------TNHT----------------GYDIILMDCQMPVMDGYEATRYIREWEQSNAQIG 601
Query: 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
PIIA TA V E+ C + GM+ +L KP ++ +L + I
Sbjct: 602 --TPIIALTADVLPGTEKSCLDCGMNDYLAKPVRKEMLREVLSRWI 645
>gi|359434928|ref|ZP_09225170.1| hypothetical protein P20652_3296 [Pseudoalteromonas sp. BSi20652]
gi|357918503|dbj|GAA61419.1| hypothetical protein P20652_3296 [Pseudoalteromonas sp. BSi20652]
Length = 983
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 42/195 (21%)
Query: 22 GLQLEFKPVPVTNNIIPQAEGSSSSCPVNDD-------------VTGVDEKKVLEGLSVL 68
G Q F P PVT A+ S+ C + ++ ++ + ++K+ +L
Sbjct: 810 GFQAYF-PKPVTT-----ADMISALCVITNNKHNDVLPLVTSGYISSLRKEKLQRYAHIL 863
Query: 69 LVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLET 128
LVED + QR+ MLKKL +TL ++G+ AV+ L
Sbjct: 864 LVEDNLINQRVSTLMLKKLNCDITLAENGQQAVDI----------------------LSK 901
Query: 129 HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS 188
H +++++LMDCQM MDG AT IR +A + + I IIA TA +++ CF++
Sbjct: 902 HEDGYFNVVLMDCQMPVMDGFDATAAIRNGDA-GDKHKDIKIIALTANAMESDKQRCFDA 960
Query: 189 GMDTFLNKPAQEHLL 203
GMD +L+KP Q +L
Sbjct: 961 GMDNYLSKPIQLAIL 975
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 35/166 (21%)
Query: 42 GSSSSCPVNDDVTGVDEKKV------LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
G+ S VT D+K+ ++ LSVL+V+D + + + L+ GA V L
Sbjct: 680 GTGSEFTATISVTQGDQKERYIHKLDIKNLSVLVVDDNKTNRIVISQQLEHWGAQVELAS 739
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG---CKAT 152
D A+E IN N Q YD+ ++D QM MDG CKA
Sbjct: 740 DAYEALEMCEKRIN----NKQTM---------------YDIAVLDMQMPGMDGIALCKA- 779
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198
L+A + +++P++ T++ + + ++G + KP
Sbjct: 780 -----LKAHNDY-KNMPLVMMTSIAGMEGAQRYSDAGFQAYFPKPV 819
>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1431
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 42 GSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAV 101
GS+ P + + +V +LL ED V Q + ML+ LG +T+ +G AAV
Sbjct: 1137 GSAGPVPHSPEFAATPRPRV--DARILLAEDNPVNQDVASSMLEMLGCRITIAPNGRAAV 1194
Query: 102 EAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE 161
EA T + +DLILMDCQM MDG AT IRR EA
Sbjct: 1195 EAAT-------------------------TGRFDLILMDCQMPEMDGFTATAAIRRQEAT 1229
Query: 162 AETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCD 221
A + +PIIA TA + C +GMD +L KP L A + + + + + S
Sbjct: 1230 ATDRRHVPIIALTANAMEGDRARCLAAGMDDYLTKPFTVAQLYAFLTQWLTPRPAEESET 1289
Query: 222 EQA 224
+QA
Sbjct: 1290 DQA 1292
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 129 HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS 188
H D+ ++D +M DG R I+ E Q++P+IA +++ +E + +
Sbjct: 1057 HKQQQIDMAILDLRMPGRDGVDLARSIK----EQAAYQNLPLIALSSVERLSDESDVTHR 1112
Query: 189 GMDTFLNKPAQEHLL 203
+FL KP ++ LL
Sbjct: 1113 LFHSFLRKPVRQSLL 1127
>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
Length = 967
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D TG+D+ K L + VL+ ED Q + ML+ G V +V +G AV+A++
Sbjct: 686 DSTGIDQDKQLFNIHVLVAEDNLTNQNVAAAMLRLFGCRVDIVSNGREAVDAIS------ 739
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
YDL+ MDCQM +DG +AT IR+ E E +++PII
Sbjct: 740 -------------------KKSYDLVFMDCQMPVLDGYQATAAIRQFEKENGVEKNMPII 780
Query: 172 AFTALVTADNERECFNSGMDTFLNKP 197
A TA + ++C +GMD +L+KP
Sbjct: 781 ALTANALEGDRKKCLTAGMDDYLSKP 806
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+DL+L+D M MDG + + I+ A A+T +I T++ ++ + +G+ +
Sbjct: 600 FDLVLLDKDMPGMDGLEVAQQIKADSAIADT----RLIMLTSVGAGNDAAQAKRNGISAY 655
Query: 194 LNKPAQEHLLAAAIVETIA 212
LNKP + L AA+++ I
Sbjct: 656 LNKPVPQADLHAAVIQIIG 674
>gi|440797540|gb|ELR18625.1| PAS, putative [Acanthamoeba castellanii str. Neff]
Length = 344
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 24/150 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ LLVED Q+IG++ML + G+ VT+ +GE + +
Sbjct: 204 LLGVKALLVEDNPFNQKIGVKMLSRAGSSVTVACNGEQCLRVLD---------------- 247
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
P +D++LMDC M MDG +ATR IR E IPIIA TA T D+
Sbjct: 248 -------EQGP-FDVVLMDCHMPIMDGLEATRRIREKEKLDHKQHRIPIIALTASTTPDD 299
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ +C +GMD +L KP LL A I +
Sbjct: 300 KAQCTQAGMDGWLGKPFDRALLCATIRRYV 329
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 67/132 (50%), Gaps = 31/132 (23%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
SVLL ED V Q + ML +LG + DG+ AV+ + +NH
Sbjct: 661 SVLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLI--------RNH---------- 702
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
HYD+ILMDCQM MDG +AT IR + IPIIA TA T D+ +C
Sbjct: 703 -------HYDIILMDCQMPVMDGFEATAQIR------QHLNKIPIIALTANATEDDRTQC 749
Query: 186 FNSGMDTFLNKP 197
N+GMD FL+KP
Sbjct: 750 LNAGMDDFLSKP 761
>gi|357168523|ref|XP_003581688.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 759
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
+ + ++L+G+ VL+ ED VLQ I RML +LGA V + DG AV+ + AG +
Sbjct: 603 IQDDRLLDGMRVLMAEDNQVLQIIQERMLSQLGATVEVAGDGSRAVDMFIDALERAGVS- 661
Query: 116 QIQNLHHGSNLETHNSP-HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
E H P YDL+ MDCQM MDG +AT+ IR E E PI+A T
Sbjct: 662 -----------EGHTVPLPYDLVFMDCQMPLMDGYEATKRIR--EEETHYKIHTPIVALT 708
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
A ++ + +GMD L KP Q + A+ + KS
Sbjct: 709 AHALEEDLHQTIQAGMDLHLTKPIQREQIVDALHQICKEKS 749
>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
Length = 1117
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 28/145 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED V Q++ + +L+KLG V +V DG A+EA+ L+
Sbjct: 868 LRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLL----------------- 910
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YD++LMD QM MDG +ATR IR L A +PI+A TA +++
Sbjct: 911 --------PYDVVLMDVQMPEMDGLEATRAIRALPLAA---AQVPIVAMTANAMRGDDQM 959
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
CF++GMD +++KP H LA A+ +
Sbjct: 960 CFDAGMDGYISKPIDRHKLAEALAK 984
>gi|167629693|ref|YP_001680192.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
Ice1]
Length = 940
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
KP+ + + + AE + P +T + + SVL+VED V Q++ +L+K+
Sbjct: 774 KPLQTSQSPVHAAESRQAPLPPPVSLTSARPTGLRQA-SVLVVEDNPVNQKLVTALLRKM 832
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
G V L G A++A+ Y LILMDCQ+ ++
Sbjct: 833 GLSVRLASSGFEAIDAL-------------------------GEEEYALILMDCQLPDLN 867
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G + T+VIR ++EAETGQ IPIIA TAL + +C +GMD +++KP L A +
Sbjct: 868 GFETTQVIR--DSEAETGQHIPIIAMTALSMQGDREKCLQAGMDDYVSKPIDRKQLTAVL 925
Query: 208 VETIA 212
++
Sbjct: 926 ARWLS 930
>gi|441505531|ref|ZP_20987514.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
gi|441426764|gb|ELR64243.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
Length = 815
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 28/153 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED AV Q++ ML+KLG V + +G A+
Sbjct: 683 VLVVEDTAVNQKVAKMMLEKLGVRVEIANNGAEAISRF---------------------- 720
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+I MDCQM MDG AT+ IR E E G IPIIA TA V + + +CF
Sbjct: 721 ---REQSFDVIFMDCQMPVMDGFAATKAIRTEETE---GHRIPIIALTANVVKEEKEKCF 774
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
+GMD F++KP + +LA + + ++ + K +
Sbjct: 775 AAGMDDFVSKPVSQKMLAVMLEKYLSATAEKLN 807
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 38/183 (20%)
Query: 25 LEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
L + V + N++P+AE +++K+L L+VLLV+D + RI L
Sbjct: 465 LFYFSVTLEKNVLPEAEE--------------NDRKLLSELNVLLVDDSMLNMRITSAQL 510
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
GA T +D AV+A L+++A + +DLI++D M
Sbjct: 511 SNYGAKSTCCED---AVKAAELVMDALNRKQP-----------------FDLIVLDKIMP 550
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
+DG + +R AE Q ++ +A +E + +G+ ++L +P +E L
Sbjct: 551 EIDGFDLAQQLRVRFAE----QCPKMMMVSAGPEMGDEEKAKQAGIGSYLARPYKESSLK 606
Query: 205 AAI 207
A+
Sbjct: 607 WAV 609
>gi|449454135|ref|XP_004144811.1| PREDICTED: histidine kinase CKI1-like [Cucumis sativus]
Length = 1038
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 82/148 (55%), Gaps = 14/148 (9%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L G VL+ ED VLQ++ L++LGA + ++G+ EA+ L+ N G +
Sbjct: 899 KPLSGKKVLVAEDNLVLQKLARLNLERLGATTEICENGK---EALELVCNGLGNQRK--- 952
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
HG++ N+ YD ILMDC+M MDG +ATR IR++E T IPIIA TA T
Sbjct: 953 --HGAS----NTLPYDYILMDCEMPIMDGYEATREIRKVERYYNT--HIPIIALTAHTTG 1004
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + +GMD L KP ++ L AI
Sbjct: 1005 EEAGKTIEAGMDVHLGKPLRKEKLLEAI 1032
>gi|440789587|gb|ELR10893.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 624
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKK-----VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
PQ G SS + +T K L G+ VLLVED V Q++G+RML LG V
Sbjct: 430 PQTTGLRSSTFIPSPLTVAPAKSPIADSSLHGVRVLLVEDNLVNQKVGVRMLASLGCSVQ 489
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+ DGE + + +D++LMDCQM MDG +AT
Sbjct: 490 VAVDGEECLRILAAADRDDDDTDDRG---------------FDVVLMDCQMPVMDGFQAT 534
Query: 153 RVIRRLEAE-AETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ IR E + T + +P+IA TA T + +CF SGM+ +L KP + LA + + +
Sbjct: 535 QRIREREHKLTPTRRPLPVIALTASATKEYREQCFLSGMNDWLAKPFTKANLAHMLRKWV 594
Query: 212 ARKSH 216
R +H
Sbjct: 595 -RPTH 598
>gi|242217331|ref|XP_002474466.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
gi|220726381|gb|EED80332.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
Length = 1160
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 68/132 (51%), Gaps = 25/132 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VLLVED V QR+G R+L+KLG V K G+ A++A++
Sbjct: 1048 TVLLVEDNPVNQRLGCRLLEKLGYDVVTAKHGQEALDAIS-------------------- 1087
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+ LMDCQM +DG TR +R+LE+E +PI+A TA VT D E C
Sbjct: 1088 -----RSTFHCCLMDCQMPVLDGFATTRKVRKLESEGTLQGHLPIVALTANVTTDCESLC 1142
Query: 186 FNSGMDTFLNKP 197
+GMD FL KP
Sbjct: 1143 RQAGMDHFLPKP 1154
>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
DSM 266]
gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
DSM 266]
Length = 985
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E +LLVED V Q++ + ML+K+G +V G+AA++AM +
Sbjct: 722 ETYHILLVEDSPVNQQVAVAMLRKIGYSPDVVASGKAAIDAMRCKV-------------- 767
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YDL+LMDCQM MDG +ATR+IR T IP++A TA +
Sbjct: 768 -----------YDLVLMDCQMPEMDGYEATRIIRTDRTLCGT-PDIPVVAMTAHAMIGDR 815
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+C ++GMD +L KP + L A +++ + RK
Sbjct: 816 EKCLSAGMDDYLPKPVCKSDLNAVLLKYLQRK 847
>gi|384486106|gb|EIE78286.1| hypothetical protein RO3G_02990 [Rhizopus delemar RA 99-880]
Length = 2359
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 25/152 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLL ED V Q++ +R+L+K G V++V +G+ AVEA
Sbjct: 2222 LEVLLAEDNDVNQKLAVRILEKFGHHVSVVANGKLAVEA--------------------- 2260
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ S ++DLILMD QM M G +AT+ IR +E + + + IPIIA TA + +
Sbjct: 2261 ----YESQYFDLILMDVQMPVMGGFEATQKIREIEKASASNRHIPIIALTAHAMIGDREK 2316
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
C +GMD ++ KP + L AAI + + +H
Sbjct: 2317 CLEAGMDEYVTKPLRFPELIAAIKKFAPQSAH 2348
>gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium
HdN1]
gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium
HdN1]
Length = 913
Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 31/171 (18%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDG 97
+AE V DD + + LE L VL+VED AV +++ MLK LG V +V+DG
Sbjct: 762 RAEAKDVRANVLDDP---EHQGKLERLRVLVVEDNAVNRQVAKGMLKSLGVMQVDMVEDG 818
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
AV+A+ + YD++LMD QM MDG +AT+ IR
Sbjct: 819 SLAVDAVKI-------------------------GQYDVVLMDVQMPVMDGYQATKCIRE 853
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
LE + +P++A TA A+ C +GMD FL KP Q LAA ++
Sbjct: 854 LEDKVRA--RVPVVALTASAGAEERNRCAENGMDDFLTKPMQRVDLAATLL 902
>gi|445499437|ref|ZP_21466292.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444789432|gb|ELX10980.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 752
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 68/134 (50%), Gaps = 27/134 (20%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VLL ED V QR+ +R+L+KLG VTLV G A +E AA H
Sbjct: 510 GLRVLLAEDNPVNQRLAVRLLEKLGHRVTLVDSGLAVLE------RAARGEH-------- 555
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
D+ILMD QM +DG ATR IR + EA G +PIIA TA A +
Sbjct: 556 -----------DVILMDVQMPGLDGLAATRQIR--QREAMQGGHVPIIAMTARAMAGDRE 602
Query: 184 ECFNSGMDTFLNKP 197
C +GMD +L KP
Sbjct: 603 RCLEAGMDDYLAKP 616
>gi|440793311|gb|ELR14498.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 660
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 26/189 (13%)
Query: 36 IIPQAEGSSSSCPVN-----DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAG 90
++PQ + S+ V G + L VLLVED A+ Q++G+RML +LG
Sbjct: 486 VVPQEDRRSAGATVTAGALPRPADGAQLSAGFDHLHVLLVEDNAINQKVGLRMLTQLGCK 545
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
+ +GE ++ MT S+ E SP +D++LMDCQM MDG +
Sbjct: 546 TRVASNGEDCLKLMT----------------QSSDRE---SP-FDIVLMDCQMPVMDGFE 585
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210
ATR +R + A+ G+ + I+A TA T + + C GM L KP Q L A + +
Sbjct: 586 ATRRLRSMGAQRH-GRPLTIVALTASATKEYAQRCLEVGMSDVLFKPLQREDLVATLRKW 644
Query: 211 IARKSHKFS 219
A + H+ +
Sbjct: 645 TATQHHQLA 653
>gi|440799306|gb|ELR20361.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 691
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 75/143 (52%), Gaps = 26/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVED A+ Q++G+RML LG T+ +GE +E +T QNL
Sbjct: 531 LDVLLVEDNAINQKVGLRMLSTLGCNTTVANNGEECLELLT------------QNL---- 574
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
N +D++LMDCQM MDG +AT+ IRR+ E G+ I I+A TA T +
Sbjct: 575 -----NESPFDIVLMDCQMPVMDGFEATQRIRRMGVERH-GRPITIVALTASAT----KR 624
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C GM L KP + L AA+
Sbjct: 625 CLEVGMSDVLFKPLRREDLVAAL 647
>gi|392570547|gb|EIW63719.1| hypothetical protein TRAVEDRAFT_54910 [Trametes versicolor
FP-101664 SS1]
Length = 995
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 25/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + QR+G R+L+KLG V DG+ A++A+
Sbjct: 867 ILLVEDNMINQRLGCRLLEKLGYEVVTANDGKLAIDAI---------------------- 904
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
++ LMDCQM +DG +AT+ IR LE E +PIIA TA VT ++E +C
Sbjct: 905 ---RKDYFACCLMDCQMPVLDGFQATKRIRELEDSGELPDHLPIIALTANVTQESEGDCK 961
Query: 187 NSGMDTFLNKP 197
+GMD FL KP
Sbjct: 962 AAGMDHFLPKP 972
>gi|258576055|ref|XP_002542209.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
gi|237902475|gb|EEP76876.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
Length = 1290
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ +++ +LL ED V QR+ +++L+K
Sbjct: 1076 RPIDLGNGMLPALEGRSTPLTIDN----------TRSFDILLAEDNDVNQRVAVKILEKC 1125
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AAVEA+ K H+ YD+ILMD QM M
Sbjct: 1126 NHGVTVVSNGLAAVEAV--------KQHR-----------------YDVILMDVQMPIMG 1160
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E ETG S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1161 GFEATGKIR--EWEKETGLSRTPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQT 1218
Query: 207 IVE 209
I++
Sbjct: 1219 ILK 1221
>gi|452966229|gb|EME71242.1| sensor protein gacS [Magnetospirillum sp. SO-1]
Length = 965
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 28/143 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED V Q++ + +L+KLG V +V DG A+EA+ L+
Sbjct: 717 LRILVAEDNPVNQQVALGLLRKLGHSVDVVGDGAEALEAVRLL----------------- 759
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDL+LMD QM MDG +ATR IR L A IPI+A TA +++
Sbjct: 760 --------PYDLVLMDVQMPGMDGLEATRAIRAL---ATPAARIPIVAMTANAMRGDDQI 808
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
CF+SGM+ +++KP LA A+
Sbjct: 809 CFDSGMNGYISKPIDRRKLAEAL 831
>gi|449490917|ref|XP_004158748.1| PREDICTED: LOW QUALITY PROTEIN: histidine kinase CKI1-like [Cucumis
sativus]
Length = 1001
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 14/154 (9%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L G VL+ ED VLQ++ L++LGA + ++G+ A+E + N Q+
Sbjct: 846 KPLSGKKVLVAEDNLVLQKLARLNLERLGATTEICENGKEALELVC--------NGLXQS 897
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
HG++ N+ YD ILMDC+M MDG +ATR IR++E T IPIIA TA T
Sbjct: 898 KEHGAS----NTLPYDYILMDCEMPIMDGYEATREIRKVERYYNT--HIPIIALTAHTTG 951
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ + +GMD L KP ++ L AI +R
Sbjct: 952 EEAGKTIEAGMDVHLGKPLRKEKLLEAITYDKSR 985
>gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
Length = 1433
Score = 86.3 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 73/148 (49%), Gaps = 28/148 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VL+ ED V + + + ML LG V +V DGE AV A+
Sbjct: 1099 GLRVLVAEDNEVNRLVAVEMLTALGHRVDVVPDGEQAVAAV------------------- 1139
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
HYD +LMDCQM +DG +AT IR L S+P+IA TA A + +
Sbjct: 1140 ------RGEHYDAVLMDCQMPVLDGYRATERIRALTPPR---GSVPVIALTASALASDAQ 1190
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GMD FL+KP + +L AA++ +
Sbjct: 1191 RCREAGMDDFLSKPLRRDVLEAALLRAV 1218
>gi|359446280|ref|ZP_09235975.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
gi|358039883|dbj|GAA72224.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
Length = 1573
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 23/137 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + Q++ MLKKL VT+ ++G+ A+E L
Sbjct: 1452 ILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIEI----------------------L 1489
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H H+ L+LMDCQM MDG AT IR A E ++I IIA TA +++ C
Sbjct: 1490 SAHEKGHFSLVLMDCQMPVMDGYSATTAIRN-NAAGEQHKAIKIIALTANAMESDKQRCI 1548
Query: 187 NSGMDTFLNKPAQEHLL 203
++GMD +L+KP Q +L
Sbjct: 1549 DAGMDDYLSKPIQLDVL 1565
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 23/143 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L++L+V+D + + L GA V L D + A+E M KN Q
Sbjct: 1299 LTILVVDDNQTNRLVISEQLGHWGAHVELASDAKQALE----MCENRIKNQQ-------- 1346
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YD+ ++D QM MDG + ++ L+A+A Q +P++ T++ ++ +
Sbjct: 1347 -------KVYDIAVLDMQMPDMDGIELCKI---LKADANY-QPMPLVMMTSIAGMEDAQR 1395
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
++G + KP L +A+
Sbjct: 1396 YSDAGFQAYFPKPVTTADLISAL 1418
>gi|359437875|ref|ZP_09227924.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
gi|358027362|dbj|GAA64173.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
Length = 1573
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 23/137 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + Q++ MLKKL VT+ ++G+ A+E L
Sbjct: 1452 ILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIEI----------------------L 1489
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H H+ L+LMDCQM MDG AT IR A E ++I IIA TA +++ C
Sbjct: 1490 SAHEKGHFSLVLMDCQMPVMDGYSATTAIRN-NAAGEQHKAIKIIALTANAMESDKQRCI 1548
Query: 187 NSGMDTFLNKPAQEHLL 203
++GMD +L+KP Q +L
Sbjct: 1549 DAGMDDYLSKPIQLDVL 1565
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 23/143 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L++L+V+D + + L GA V L D + A+E M KN Q
Sbjct: 1299 LTILVVDDNQTNRLVISEQLGHWGAHVELASDAKQALE----MCENRIKNQQ-------- 1346
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YD+ ++D QM MDG + ++ L+A+A Q +P++ T++ ++ +
Sbjct: 1347 -------KVYDIAVLDMQMPDMDGIELCKI---LKADANY-QPMPLVMMTSIAGMEDAQR 1395
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
++G + KP L +A+
Sbjct: 1396 YSDAGFQAYFPKPVTTADLISAL 1418
>gi|385331354|ref|YP_005885305.1| sensory box histidine kinase/response regulator [Marinobacter
adhaerens HP15]
gi|311694504|gb|ADP97377.1| sensory box histidine kinase/response regulator [Marinobacter
adhaerens HP15]
Length = 647
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 27/166 (16%)
Query: 48 PVNDDVTGVDEKKVLEGLS-VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
P + +G ++ + G S L+VED V QR+ MLK+LG +G+ A++ +T
Sbjct: 505 PSEPEPSGTPPRETINGTSHALVVEDNPVNQRVATAMLKRLGFHTDSANNGKEALDRVT- 563
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
NH YD+ILMDCQM MDG +ATR IR E E GQ
Sbjct: 564 ------TNHT----------------GYDIILMDCQMPVMDGYEATRYIR--EWEQSNGQ 599
Query: 167 -SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
PIIA TA V E+ C + GM+ +L KP ++ +L + I
Sbjct: 600 IGTPIIALTADVLPGTEKSCLDCGMNDYLAKPVRKEMLREVLSRWI 645
>gi|359452292|ref|ZP_09241643.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
gi|358050636|dbj|GAA77892.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
Length = 1587
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 23/151 (15%)
Query: 53 VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
++ + ++K+ E + +LLVED + Q++ MLKKL +TL ++G+ A++
Sbjct: 1452 ISSLKKEKLGEPIQILLVEDNPINQQVSTLMLKKLNCNITLAENGQLAIDI--------- 1502
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
L TH ++ +LMDCQM MDG AT+ IR A + + I IIA
Sbjct: 1503 -------------LNTHGQGYFKAVLMDCQMPVMDGFDATKAIRNGLA-GDKHKDIKIIA 1548
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLL 203
TA +++ CF +GMD +L+KP Q L
Sbjct: 1549 LTANAMDADKQRCFAAGMDDYLSKPIQLDFL 1579
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
+K ++GLSVL+V+D + + + L+ GA V L D A+ I+
Sbjct: 1306 QKLNIKGLSVLVVDDNETNRIVISQQLEHWGAHVALACDAYDALAMCESRIS-------- 1357
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFT 174
SNL+ YD+ ++D QM MDG CKA + + +++P++ T
Sbjct: 1358 ------SNLKM-----YDIAVLDMQMPGMDGIGLCKALKA-------NDDFKNMPLVMMT 1399
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
++ + + + G + KP L +A+
Sbjct: 1400 SIAGMEGAQRYSSIGFQAYFPKPVTTADLISAL 1432
>gi|242218736|ref|XP_002475155.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
gi|220725649|gb|EED79627.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
Length = 1090
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 74/146 (50%), Gaps = 29/146 (19%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VLLVED V QR+G R+L+KLG V G+ A++A++
Sbjct: 962 TVLLVEDNPVNQRLGCRLLEKLGYAVVTANHGQEALDAIS-------------------- 1001
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
S Y LMDCQM +DG TR +R LE+E +PI+A TA VT D E C
Sbjct: 1002 ----RSTFY-CCLMDCQMPVLDGFATTRKVRELESEGTLQGHLPIVALTANVTTDCESLC 1056
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETI 211
+GMD FL KP L+ A + ET+
Sbjct: 1057 RQAGMDHFLPKP----LVLADLEETL 1078
>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
regulator [Geobacter bemidjiensis Bem]
gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
domain-containing [Geobacter bemidjiensis Bem]
Length = 947
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
++P + + V++ V + L GL +L+ ED A ++++ ML++L V +
Sbjct: 798 VVPHPDEQPAEVAVSESVAPDPGGQELAGLRLLIAEDDATIRQVLATMLQRLQFSVDFAE 857
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
DG VE YDLILMD QM MDG +ATR I
Sbjct: 858 DGAKVVEMW-------------------------RQGEYDLILMDVQMPRMDGFQATRAI 892
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
R E E G IPIIA TA +++R C ++GMD +++KP
Sbjct: 893 R----EQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKP 930
>gi|414069249|ref|ZP_11405244.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
gi|410808364|gb|EKS14335.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
Length = 1587
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 23/151 (15%)
Query: 53 VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
++ + ++K+ E + +LLVED + Q++ MLKKL +TL ++G+ A++
Sbjct: 1452 ISSLKKEKLGEPIQILLVEDNPINQQVSTLMLKKLNCNITLAENGQLAIDI--------- 1502
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
L TH ++ +LMDCQM MDG AT+ IR A + + I IIA
Sbjct: 1503 -------------LNTHGQGYFKAVLMDCQMPVMDGFDATKAIRNGLA-GDKHKDIKIIA 1548
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLL 203
TA +++ CF +GMD +L+KP Q L
Sbjct: 1549 LTANAMDADKQRCFAAGMDDYLSKPIQLDFL 1579
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
+K ++GLSVL+V+D + + + L+ GA V L D A+ I+
Sbjct: 1306 QKLNIKGLSVLVVDDNETNRIVISQQLEHWGAHVALACDAYDALAMCESRIS-------- 1357
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFT 174
SNL+ YD+ ++D QM MDG CKA + + +++P++ T
Sbjct: 1358 ------SNLKM-----YDIAVLDMQMPGMDGIGLCKALKA-------NDDFKNMPLVMMT 1399
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
++ + + + G + KP L +A+
Sbjct: 1400 SIAGMEGAQRYSSIGFQAYFPKPVTTADLISAL 1432
>gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417952930|ref|ZP_12595980.1| Signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342818172|gb|EGU53042.1| Signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
Length = 886
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 25/144 (17%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L G +L+VED V Q++ +L K G + +G+ A++
Sbjct: 760 KTLHGHRILIVEDNRVNQKVASLLLAKAGYQFDIADNGQIALDKF--------------- 804
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+ HYDLILMDC M MDG ATR IR++E E ++ PIIA TA V
Sbjct: 805 ---------QSEEHYDLILMDCMMPVMDGFTATREIRQIETECGLTKT-PIIALTASVLD 854
Query: 180 DNERECFNSGMDTFLNKPAQEHLL 203
D+ + CF SGMD ++ KP ++ L
Sbjct: 855 DDIQRCFESGMDAYVAKPVKKEKL 878
>gi|303323473|ref|XP_003071728.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111430|gb|EER29583.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320035142|gb|EFW17084.1| signal transduction histidine-protein kinase barA [Coccidioides
posadasii str. Silveira]
Length = 1285
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V Q++ +++L+K
Sbjct: 1076 RPIDLGNGMLPALEGRST--PLTTDNT--------RSFDILLAEDNDVNQKVAVKILEKC 1125
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AAVEA+ K H+ YD+ILMD QM M
Sbjct: 1126 NHGVTVVSNGLAAVEAV--------KQHR-----------------YDVILMDVQMPIMG 1160
Query: 148 GCKATRVIRRLEAEAETG-QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E G Q PIIA TA + +C + MD +L KP +++ +
Sbjct: 1161 GFEATGKIR--EWEKENGLQRTPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQT 1218
Query: 207 IVE 209
I++
Sbjct: 1219 ILK 1221
>gi|119188929|ref|XP_001245071.1| hypothetical protein CIMG_04512 [Coccidioides immitis RS]
Length = 1284
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V Q++ +++L+K
Sbjct: 1072 RPIDLGNGMLPALEGRST--PLTTDNT--------RSFDILLAEDNDVNQKVAVKILEKC 1121
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AAVEA+ K H+ YD+ILMD QM M
Sbjct: 1122 NHGVTVVSNGLAAVEAV--------KQHR-----------------YDVILMDVQMPIMG 1156
Query: 148 GCKATRVIRRLEAEAETG-QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E G Q PIIA TA + +C + MD +L KP +++ +
Sbjct: 1157 GFEATGKIR--EWEKENGLQRTPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQT 1214
Query: 207 IVE 209
I++
Sbjct: 1215 ILK 1217
>gi|392867974|gb|EAS33695.2| DRK1 histidine kinase [Coccidioides immitis RS]
Length = 1286
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V Q++ +++L+K
Sbjct: 1076 RPIDLGNGMLPALEGRST--PLTTDNT--------RSFDILLAEDNDVNQKVAVKILEKC 1125
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AAVEA+ K H+ YD+ILMD QM M
Sbjct: 1126 NHGVTVVSNGLAAVEAV--------KQHR-----------------YDVILMDVQMPIMG 1160
Query: 148 GCKATRVIRRLEAEAETG-QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E G Q PIIA TA + +C + MD +L KP +++ +
Sbjct: 1161 GFEATGKIR--EWEKENGLQRTPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQT 1218
Query: 207 IVE 209
I++
Sbjct: 1219 ILK 1221
>gi|359441190|ref|ZP_09231091.1| hypothetical protein P20429_1455 [Pseudoalteromonas sp. BSi20429]
gi|358036897|dbj|GAA67340.1| hypothetical protein P20429_1455 [Pseudoalteromonas sp. BSi20429]
Length = 1587
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 32/190 (16%)
Query: 22 GLQLEFKPVPVTNN--------IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQ 73
G Q F P PVT I G + + ++ + ++K+ E +LLVED
Sbjct: 1414 GFQAYF-PKPVTTADLISALSVITSNDAGEALPLVTSGYISSLKKEKMQESSQILLVEDN 1472
Query: 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133
+ Q++ MLKKL VT+ +G+ A++ LE H+S +
Sbjct: 1473 PINQQVAKLMLKKLNCDVTIAGNGQLAIDI----------------------LEAHDSGY 1510
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+ L+LMDCQM MDG AT IR+ A + ++I IIA TA ++ C +GMD +
Sbjct: 1511 FKLVLMDCQMPVMDGFAATAAIRKGVAGIQH-KNIKIIAITANAMNSDKERCITAGMDDY 1569
Query: 194 LNKPAQEHLL 203
L+KP Q +L
Sbjct: 1570 LSKPIQLDIL 1579
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 29/149 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+E L+VL+V+D + + + L+ GA V L D A++ H
Sbjct: 1310 MEELTVLVVDDNETNRIVISQQLEHWGAKVALACDAHEALDMCAQ--------------H 1355
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+ SN + YD+ ++D QM MDG CKA + E +S+P++ T++
Sbjct: 1356 YKSN-----NCMYDIAVLDMQMPGMDGIELCKALKA-------HEHYKSMPLVMMTSIAG 1403
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + ++G + KP L +A+
Sbjct: 1404 MEGAQRYSDAGFQAYFPKPVTTADLISAL 1432
>gi|407068210|ref|ZP_11099048.1| histidine kinase [Vibrio cyclitrophicus ZF14]
Length = 1060
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 24/145 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I + K G +G+ A++ T+
Sbjct: 771 ILIVEDNRINQKIAGLHVGKSGFEFEFANNGQEAIDKFTV-------------------- 810
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+PHY ILMDC M MDG +AT IRR+E E + + IPIIA TA V D+ ++CF
Sbjct: 811 ----NPHYAAILMDCMMPVMDGFEATSNIRRIELETKATRRIPIIALTASVIDDDIQKCF 866
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + +L I+ +
Sbjct: 867 DVGMDDYVPKPFKFEMLKEKILTAV 891
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 37/201 (18%)
Query: 14 PEKLE-LEHGLQLEFKPVPVTN-NIIPQAEGSSSSCPVND----DVTGVDE--KKVLEGL 65
P K E L+ + + +P+ N N+ P +S+ P+++ T DE +K +
Sbjct: 877 PFKFEMLKEKILTAVEAMPLANRNVSPTTSKTSTVTPIHNASSAKQTLPDELKQKTIPRK 936
Query: 66 S--VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
S +LLVED V Q++ ML K G L ++G+ AV+
Sbjct: 937 SERILLVEDNRVNQKVASLMLTKAGYAFELAENGQIAVDMY------------------- 977
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNE 182
N +D+ILMDC M MDG AT+ IR E E G S PIIA TA V D+
Sbjct: 978 -----QNDSGFDVILMDCMMPVMDGFTATKEIR--EYEKNLGLSKTPIIALTASVIDDDI 1030
Query: 183 RECFNSGMDTFLNKPAQEHLL 203
++CF+SGMD ++ KP ++ L
Sbjct: 1031 QKCFDSGMDGYVAKPVRKEKL 1051
>gi|452979733|gb|EME79495.1| hypothetical protein MYCFIDRAFT_142314, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1153
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGV--------DEKKVLEGLSVLLVEDQAVLQRIGI 81
P T+ + ++ SS PVN G DE+KV +VL+VED AV Q+I +
Sbjct: 980 TPTTSAVRHRSYPSSGLTPVNSWPDGALPELDLSADERKVT---NVLVVEDNAVNQQIAL 1036
Query: 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141
+ ++KLG V V +G+ A++ + + P D+ILMD
Sbjct: 1037 KTIRKLGFPVRAVWNGQEALDYLAT--------------------PSEEQPRPDIILMDV 1076
Query: 142 QMGSMDGCKATRVIRRLEAEAETG--QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ 199
QM MDG KAT +R + QSIPI+A TA + +C ++GMD +L+KP +
Sbjct: 1077 QMPIMDGYKATYTVRNGKPFVNNPEVQSIPIVAMTASAIQGDREKCQDAGMDDYLSKPVK 1136
Query: 200 EHLLAAAIVE 209
+ L IV+
Sbjct: 1137 KPNLERMIVK 1146
>gi|167998684|ref|XP_001752048.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
gi|162697146|gb|EDQ83483.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
Length = 1436
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 21/161 (13%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K LE L +L+ ED +L+++ ML++LGA +G+ +EA+
Sbjct: 1216 KPLENLEILVAEDTPLLRKLAAAMLRRLGAVTYEASNGQEVLEAVM-------------- 1261
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+ ++ SP ++ ILMDCQM MDG +A + IR E + SI +A TA A
Sbjct: 1262 ----NRMQCGQSP-FNCILMDCQMPVMDGYEACKAIREFEKDVTWRTSI--VALTANAMA 1314
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
+E++C +GMD FL KP + + I+ T+ S C
Sbjct: 1315 SDEQKCLKAGMDAFLTKPIDQEYMVQVILRTMTPTSFGNGC 1355
>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1349
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 31/162 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVEDQ V Q++ +++++ +G GV + +G+ +EA N A
Sbjct: 1092 LRVLLVEDQMVNQKVAVKIIQNMGHGVVVADNGQEGLEAFK---NGA------------- 1135
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++ MD QM MDG AT IR+LE+E E IPIIAFTA ++
Sbjct: 1136 ---------FDIVFMDVQMPVMDGLAATAAIRKLESE-ENRARIPIIAFTAHAMEGDKER 1185
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEA 226
++GMD +L KP ++ L + K+ K SC+ +A
Sbjct: 1186 FLSAGMDDYLTKPVKKDALT-----RVMEKATKRSCEAPEDA 1222
>gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC
25259]
gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
ATCC 25259]
Length = 781
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 75/159 (47%), Gaps = 40/159 (25%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
+A G+ +S P G E+ VLLVED V Q++ ML KLG T+ DG
Sbjct: 505 EASGAGTSAPA---FQGRGER-------VLLVEDNPVNQQVAQAMLAKLGLATTVASDGR 554
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
AV+ + S +D +LMDCQM MDG +ATR IRRL
Sbjct: 555 EAVDLVA-------------------------SRAFDAVLMDCQMPVMDGYEATRAIRRL 589
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G +P+IA TA + ++C +SGMD FL KP
Sbjct: 590 -----PGARLPVIALTANALHGDRQKCLDSGMDDFLPKP 623
>gi|148975487|ref|ZP_01812358.1| putative histidine kinase [Vibrionales bacterium SWAT-3]
gi|145964915|gb|EDK30166.1| putative histidine kinase [Vibrionales bacterium SWAT-3]
Length = 540
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I + K G +G+ AV+ T
Sbjct: 242 ILIVEDNKINQKIAGLHVGKSGFEFEFANNGQEAVDMFT--------------------- 280
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+PHY ILMDC M MDG +AT IRR+E E E + IPIIA TA V D+ ++CF
Sbjct: 281 ---ANPHYAAILMDCMMPVMDGFEATGHIRRIEKETEATRRIPIIALTASVIDDDIQKCF 337
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + +L ++ +
Sbjct: 338 DVGMDDYVPKPFKFEMLKEKVLTAV 362
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 27/138 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ MLKK G + +G+ AV+
Sbjct: 420 ILLVEDNRVNQKVASVMLKKAGYAFEIADNGQIAVDMY---------------------- 457
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
+ +D+ILMDC M MDG AT+ IR E E G + PIIA TA V D+ ++C
Sbjct: 458 --QSDSSFDVILMDCMMPVMDGFTATKEIR--EHEKNLGLTKTPIIALTASVIDDDIQKC 513
Query: 186 FNSGMDTFLNKPAQEHLL 203
F+SGMD ++ KP ++ L
Sbjct: 514 FDSGMDGYVAKPVRKEKL 531
>gi|440800686|gb|ELR21721.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 838
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 26/157 (16%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +LEG +LLVED V Q++ RML LG VT+ +GE +
Sbjct: 698 RMLLEGARILLVEDNEVNQKVAKRMLHCLGCQVTVAGNGEVCLAV--------------- 742
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG-QSIPIIAFTALV 177
L+ P +D+ILMDCQM +DG AT IR E E TG P++A TA
Sbjct: 743 -------LDEATEP-FDVILMDCQMPILDGFHATLKIR--EKEKVTGIPRTPVVALTASA 792
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
T + +++CF+ GMD FL+KP + +LA + I +
Sbjct: 793 TKEYQQKCFSVGMDDFLSKPFTKTMLARILKRWIGTR 829
>gi|392534310|ref|ZP_10281447.1| two-component hybrid sensor and regulator [Pseudoalteromonas arctica
A 37-1-2]
Length = 1587
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 32/190 (16%)
Query: 22 GLQLEFKPVPVTNN--------IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQ 73
G Q F P PVT I G + + ++ + ++K+ E +LLVED
Sbjct: 1414 GFQAYF-PKPVTTADLISALSVITSNDAGETLPLVTSGYISSLKKEKMQEFSQILLVEDN 1472
Query: 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133
+ Q++ MLKKL VT+ +G+ A++ LE H+S +
Sbjct: 1473 PINQQVAKLMLKKLNCDVTIAGNGQLAIDI----------------------LEAHDSGY 1510
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+ L+LMDCQM MDG AT IR+ A + ++I IIA TA ++ C +GMD +
Sbjct: 1511 FKLVLMDCQMPVMDGFAATAAIRKGVAGIQH-KNIKIIAITANAMNSDKERCITAGMDDY 1569
Query: 194 LNKPAQEHLL 203
L+KP Q +L
Sbjct: 1570 LSKPIQLDIL 1579
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+E L+VL+V+D + + + L+ GA V L D A++ Q ++
Sbjct: 1310 MEELTVLVVDDNETNRIVISQQLEHWGAKVALACDAHEALDMCA---------QQYKD-- 1358
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YD+ ++D QM MDG CKA + E +S+P++ T++
Sbjct: 1359 --------KSCMYDIAVLDMQMPGMDGIELCKALKA-------HEHYKSMPLVMMTSIAG 1403
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + ++G + KP L +A+
Sbjct: 1404 MEGAQRYSDAGFQAYFPKPVTTADLISAL 1432
>gi|83647950|ref|YP_436385.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83635993|gb|ABC31960.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 758
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 36/154 (23%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D K+ GL VLLVED V + + +ML+K G V ++GE A++ M
Sbjct: 627 DSKR--SGLRVLLVEDNTVNRNLARKMLEKCGCRVDFAENGEIAIQQM------------ 672
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS---IPIIAF 173
S H+DLI MDC M MDG + TR IR E+GQS IPI+A
Sbjct: 673 -------------GSTHFDLIFMDCWMPVMDGYETTRRIR------ESGQSFSHIPIVAL 713
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
TA + +C GMD FL KP + L+A +
Sbjct: 714 TANAFPGEKEKCMQCGMDDFLTKPIRFEELSAIV 747
>gi|383764386|ref|YP_005443368.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384654|dbj|BAM01471.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 797
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 27/147 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
V GL +LL ED V Q++ +R L+K VT+V +G A+EA++
Sbjct: 656 VRPGLRLLLAEDNVVNQKVAVRFLQKYNFEVTVVGNGAEALEALS--------------- 700
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+ YDL+LMD QM MDG +A + +R+ EA TG IP+IA TA
Sbjct: 701 ----------NDRYDLVLMDVQMPIMDGLEAVQHLRK--REATTGGHIPVIAMTAHAMQG 748
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAI 207
+ C +GMD +++KP + H L A I
Sbjct: 749 DRERCLAAGMDGYVSKPFKAHELLAEI 775
>gi|381161140|ref|ZP_09870371.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380877376|gb|EIC19469.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1633
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 26/160 (16%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+E+ GL VL VED+ V Q + R+L+K G V ++G A+E +
Sbjct: 1499 NEQDCFAGLRVLAVEDEKVNQIVIARLLEKKGCKVATAENGREALEVL------------ 1546
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ YD++LMD QM MDG +AT+ IRR +A E +IPIIA TA
Sbjct: 1547 -------------RAESYDIVLMDQQMPEMDGIEATKAIRRGDA-GERACNIPIIALTAF 1592
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
A ++ N+GMD + KP L AI E IA++++
Sbjct: 1593 AMAGDKERLMNAGMDAYAPKPISIEQLRTAIREAIAKRAN 1632
>gi|452850772|ref|YP_007492456.1| Hpt sensor hybrid histidine kinase (fragment) [Desulfovibrio
piezophilus]
gi|451894426|emb|CCH47305.1| Hpt sensor hybrid histidine kinase (fragment) [Desulfovibrio
piezophilus]
Length = 521
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 32/159 (20%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
+KK LEG+SVL+ ED V QR +R+L+++G V L +DG AV+A L +N+
Sbjct: 391 DKKPLEGVSVLVAEDDLVNQRYVVRLLQRMGCQVQLAEDGLQAVDA--LKVNS------- 441
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG---QSIPIIAFT 174
+D++LMD +M M+G +ATR IR E TG IPIIA T
Sbjct: 442 ----------------FDIVLMDVEMPVMNGIEATRHIR----EPGTGCLEPDIPIIALT 481
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
A +E+ C ++GM+ ++ KP +AA I T+ R
Sbjct: 482 AHAMWGDEQRCIHAGMNDYVAKPVDIDTVAAIIEATLNR 520
>gi|444378417|ref|ZP_21177616.1| hypothetical protein D515_2359 [Enterovibrio sp. AK16]
gi|443677514|gb|ELT84196.1| hypothetical protein D515_2359 [Enterovibrio sp. AK16]
Length = 1302
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 26/140 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
++GLSVL+ ED V Q + +L KLG TL +G A E
Sbjct: 1026 VQGLSVLIAEDHPVNQELINTVLTKLGCKTTLADNGSIAFERFM---------------- 1069
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S YD+I MDCQM MDG +ATR IR+LE+E + + +PIIA TA + +
Sbjct: 1070 ---------SNRYDMIFMDCQMPVMDGFEATRKIRQLESENQLPE-VPIIAMTANAMSGD 1119
Query: 182 ERECFNSGMDTFLNKPAQEH 201
+C +GM ++ KP ++H
Sbjct: 1120 REKCLEAGMTEYIAKPFKQH 1139
>gi|384109189|ref|ZP_10010071.1| Signal transduction histidine kinase [Treponema sp. JC4]
gi|383869232|gb|EID84849.1| Signal transduction histidine kinase [Treponema sp. JC4]
Length = 607
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 24/151 (15%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
DE+ ++ G +L+VED + + I ML+ G V KDG AV+ M+N AG +
Sbjct: 465 DEEILISGKRILVVEDNTLNREIVKDMLESAGCIVEEAKDGSFAVD----MVNLAGDGY- 519
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
YDLILMD QM MDG +ATR+IR E+ + IPI+A +A
Sbjct: 520 -----------------YDLILMDIQMPIMDGYEATRIIRSFPNESLS--KIPIVALSAN 560
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
D++++ F++GMD F++KP LA +
Sbjct: 561 AFPDDKKKAFDNGMDAFISKPVSSDKLARVL 591
>gi|386848326|ref|YP_006266339.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
gi|359835830|gb|AEV84271.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
Length = 1418
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 28/139 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+ ED V Q + ML LG + DGE AV +
Sbjct: 1169 VLIAEDNEVNQEVTREMLAALGYTCDIAADGEQAVRML---------------------- 1206
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ HYD +LMDCQM +DG +AT VIRRL A ++P+IA TA V A +++ C
Sbjct: 1207 ---QTRHYDAVLMDCQMPVLDGYQATEVIRRLPAPR---NAVPVIALTASVLASDQQRCR 1260
Query: 187 NSGMDTFLNKPAQEHLLAA 205
++GMD L KP ++H L A
Sbjct: 1261 SAGMDDVLTKPLRKHDLQA 1279
>gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
Length = 1059
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I + K G +G+ AV+ T
Sbjct: 771 ILIVEDNKINQKIAGLHVGKSGFEFEFANNGQEAVDMFT--------------------- 809
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+PHY +ILMDC M MDG +AT IRR+E E + IPIIA TA V D+ ++CF
Sbjct: 810 ---ANPHYAVILMDCMMPVMDGFEATSNIRRVEKETNATRRIPIIALTASVIDDDIQKCF 866
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + +L ++ +
Sbjct: 867 DVGMDDYVPKPFKFEMLKEKVLAAV 891
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 27/138 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ ML K G + +G+ AV+
Sbjct: 939 ILLVEDNRVNQKVASVMLTKAGYAFEIADNGQIAVDMY---------------------- 976
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
N +D+ILMDC M MDG AT+ IR E E G S PIIA TA V D+ ++C
Sbjct: 977 --QNDSSFDIILMDCMMPVMDGFTATKEIR--EHEKNLGLSKTPIIALTASVIDDDIQKC 1032
Query: 186 FNSGMDTFLNKPAQEHLL 203
F+SGMD ++ KP ++ L
Sbjct: 1033 FDSGMDGYVAKPVRKEKL 1050
>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1464
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 22/167 (13%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED A+ Q+I ++ ++KLG + V +G+ EA+ ++ A
Sbjct: 1034 IKILLVEDNAINQQIALKTIRKLGFTASAVWNGK---EALDYLLAA-------------- 1076
Query: 125 NLETHNSPHY--DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
++ N PH D+ILMD QM +DG +AT ++R + + ++IPI+A TA V +
Sbjct: 1077 --DSPNPPHPKPDIILMDVQMPIIDGYRATHILRHHSPYSYSTRNIPIVAMTASVIQGDR 1134
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVE-TIARKSHKFSCDEQAEAQD 228
+C +GMD +L KP + L +V I R+ K D E D
Sbjct: 1135 EKCQKAGMDDYLAKPVKGKTLEKMLVRWAINRRVPKQESDRDDEGSD 1181
>gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Bermanella
marisrubri]
gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
RED65]
Length = 553
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 30/161 (18%)
Query: 48 PVN-DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
PV+ DD + + K +E + +L+ ED Q + MLK+LG L DG+ A+
Sbjct: 418 PVSVDDDSAIRSNKPVENIRILVAEDNKTNQLVISTMLKRLGYQYDLCGDGQEAL----- 472
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
S L+ + YDL+LMDCQM +MDG AT+ IR+ +
Sbjct: 473 -----------------SQLDKQD---YDLVLMDCQMPTMDGFIATQNIRK----NPDLK 508
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
++PIIA TA T +++CF+SGM+ FL+KP + ++L A+
Sbjct: 509 NLPIIALTAGATEKEQKQCFDSGMNDFLSKPIKLNVLKDAL 549
>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 962
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 27/134 (20%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL +L+ ED A ++++ ML+KL V +DGE VE G
Sbjct: 839 GLRLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVE----------------KWRQG 882
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDLILMD QM +DG +ATR IR E E E G IPIIA TA +++R
Sbjct: 883 ---------EYDLILMDVQMPRLDGFQATRAIR--EQEQEQGARIPIIAMTAHAMKEDQR 931
Query: 184 ECFNSGMDTFLNKP 197
C ++GMD +++KP
Sbjct: 932 RCLDAGMDDYISKP 945
>gi|350531306|ref|ZP_08910247.1| Signal transduction histidine kinase [Vibrio rotiferianus DAT722]
Length = 1034
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 26/148 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+V+D V Q+I ++K G DG+ A L
Sbjct: 771 VLIVDDNNVNQKIAGLHVRKAGFDFDFANDGQEA-------------------------L 805
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
E + + Y +ILMDC M MDG +AT+ IR++EAE + IPIIA TA V D+ ++CF
Sbjct: 806 ELYQANQYCIILMDCMMPVMDGFEATKRIRQIEAE-QNKPKIPIIALTASVVDDDIQKCF 864
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARK 214
N GM ++ KP + +LL +++ IA K
Sbjct: 865 NVGMTDYMAKPFKANLLQDKMLQAIADK 892
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AV+
Sbjct: 915 ILLVEDNNVNQKVASLLLNKAGYQFEIAENGQVAVDMF---------------------- 952
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M DG +ATR IR+ E ++ ++ PIIA TA V D+ + CF
Sbjct: 953 --QQDRGFDIILMDCMMPIKDGFEATREIRQFEQDSGLSKT-PIIALTASVVDDDIQRCF 1009
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 1010 DSGMDAYVPKPIRKEKL 1026
>gi|441503343|ref|ZP_20985350.1| CheY-like receiver protein [Photobacterium sp. AK15]
gi|441429559|gb|ELR67014.1| CheY-like receiver protein [Photobacterium sp. AK15]
Length = 903
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 24/137 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ LKK G + +G+ A++A+ GK
Sbjct: 780 VLVVEDNLVNQKVASLFLKKAGYQYEVANNGQEALDAV-----KQGK------------- 821
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y ILMDC M MDG AT+ IRR E EA+TG +PIIA TA V ++ CF
Sbjct: 822 ------RYGAILMDCMMPVMDGFTATQEIRRWEHEAKTGYRLPIIALTASVLDEDINRCF 875
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP ++ +L
Sbjct: 876 DVGMDDYVAKPFKKEVL 892
>gi|384496007|gb|EIE86498.1| hypothetical protein RO3G_11209 [Rhizopus delemar RA 99-880]
Length = 2934
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 26/152 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLL ED V Q++ +R+L+K G VT+V +G+ AVEA
Sbjct: 2664 LEVLLAEDNDVNQKLAVRILEKFGHHVTVVANGKLAVEA--------------------- 2702
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ S ++DLILMD QM M G +AT+ IR +E + + + IPIIA TA + +
Sbjct: 2703 ----YESQYFDLILMDVQMPVMGGFEATQKIREIE-KTSSNRHIPIIALTAHAMIGDREK 2757
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
C +GMD ++ KP + L AI + + +H
Sbjct: 2758 CLEAGMDEYVTKPLRFPELIGAIKKFAPQSAH 2789
>gi|392410144|ref|YP_006446751.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623280|gb|AFM24487.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1125
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 27/161 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED A Q++ + ML ++G V +V +G+ + A I+N
Sbjct: 878 ILLAEDNAFNQKVALGMLTQMGHSVKVVSNGQEVLNA-------------IEN------- 917
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD QM MDG +AT+ IRRLE E + G PIIA TA + +C
Sbjct: 918 -----ERFDLILMDVQMPHMDGFEATKRIRRLE-EHDGGGRTPIIAMTAYAMKGDREKCL 971
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
+GMD +L+KP L A+++E I+ ++ D Q
Sbjct: 972 QTGMDGYLSKPVNSREL-ASMIENISANANSIGSDVSVPTQ 1011
>gi|417950762|ref|ZP_12593879.1| putative histidine kinase [Vibrio splendidus ATCC 33789]
gi|342805982|gb|EGU41224.1| putative histidine kinase [Vibrio splendidus ATCC 33789]
Length = 1070
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I + K G +G+ AV+ T
Sbjct: 778 ILIVEDNKINQKIAGLHVGKSGFEFEFANNGQEAVDMFT--------------------- 816
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+PHY ILMDC M MDG +AT IRR+E E + + IPIIA TA V D+ ++CF
Sbjct: 817 ---ANPHYAAILMDCMMPVMDGFEATDHIRRIEKETQATRRIPIIALTASVIDDDIQKCF 873
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + +L ++ +
Sbjct: 874 DVGMDDYVPKPFKFEMLKEKVLTAV 898
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 27/138 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ MLKK G + +G+ AV+
Sbjct: 950 ILLVEDNRVNQKVASVMLKKAGYTFEIADNGQIAVDMY---------------------- 987
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
N +D+ILMDC M MDG ATR IR E E G + PIIA TA V D+ ++C
Sbjct: 988 --QNDSSFDIILMDCMMPVMDGFTATREIR--EHEKNLGLTKTPIIALTASVIDDDIQKC 1043
Query: 186 FNSGMDTFLNKPAQEHLL 203
F+SGMD ++ KP ++ L
Sbjct: 1044 FDSGMDGYVAKPVRKEKL 1061
>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 703
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 78/164 (47%), Gaps = 34/164 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ LKK G + V +G AVEA+
Sbjct: 565 ILLVEDNPVNQKLASIQLKKFGLPLLAVSNGREAVEAV---------------------- 602
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDCQM MDG +ATR IRR+ EAE G +PI+A TA + EC
Sbjct: 603 ---RREKYSLILMDCQMPEMDGFEATREIRRI--EAEQGGHVPIVAMTARAMRGDREECL 657
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCD-EQAEAQDE 229
GMD +++KP + L + I F+ D E+AE D+
Sbjct: 658 ACGMDDYISKPIRSADLRRILNRWI------FAIDVEKAERPDD 695
>gi|386815513|ref|ZP_10102731.1| multi-sensor hybrid histidine kinase [Thiothrix nivea DSM 5205]
gi|386420089|gb|EIJ33924.1| multi-sensor hybrid histidine kinase [Thiothrix nivea DSM 5205]
Length = 943
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 44/184 (23%)
Query: 17 LELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVL 76
L L + + + +P PV I Q +G++ + V++K++L L ED +V
Sbjct: 781 LVLRYLSRFQIQPAPVEP--IMQTDGAT--------ILAVNKKRIL------LTEDHSVN 824
Query: 77 QRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135
Q++ + MLKKLG + +GE A++A+ QN YD
Sbjct: 825 QKVALAMLKKLGHTHIDCALNGEEALQAVQ------------QN-------------AYD 859
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195
L+LMDCQM MDG +ATR IR+L A Q++PIIA TA ++ +C+ +GM+ +L+
Sbjct: 860 LVLMDCQMPKMDGYEATRQIRQLPAPLY--QALPIIALTAHTMKGDDEKCYAAGMNDYLS 917
Query: 196 KPAQ 199
KP +
Sbjct: 918 KPVR 921
>gi|421077115|ref|ZP_15538086.1| PAS sensor protein [Pelosinus fermentans JBW45]
gi|392524503|gb|EIW47658.1| PAS sensor protein [Pelosinus fermentans JBW45]
Length = 854
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 40/190 (21%)
Query: 25 LEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
E +P+ N+ + Q + S SS E + +E L VLLVED+ + Q++ ++ML
Sbjct: 565 FEVSQMPLGNHPLEQPKQSESS----------KELERIEKLQVLLVEDEFINQKVAVKML 614
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
G VTL +G+ A+E N +D+I MD QM
Sbjct: 615 TNQGHNVTLASNGKQAIEFF-------------------------NKEQFDIIFMDIQMP 649
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
MDG + T IR LE + + IPI+A TA + + GMD +++KP L
Sbjct: 650 EMDGVQTTAAIRDLEEQWADERHIPIVAMTAYAMKGDRERLMSCGMDEYISKP-----LD 704
Query: 205 AAIVETIARK 214
A ++ + RK
Sbjct: 705 AEVLNNVVRK 714
>gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4]
gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4]
Length = 641
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 28/158 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+K+G V + + GE+A L
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKIGMRVNVAEHGESA-------------------------L 545
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +DLILMDCQM MDG AT IR++ E G+ +PIIA +A V ++++ CF
Sbjct: 546 RQCQTDQFDLILMDCQMPVMDGFIATENIRKM---GEWGRKVPIIALSANVIKEDQQRCF 602
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQA 224
GM+ F+ KP + L + R H S +QA
Sbjct: 603 EVGMNEFVAKPVTKACLQKIFERYLQRPQHTRSNPKQA 640
>gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9]
gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9]
Length = 680
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 33/192 (17%)
Query: 26 EFKPVPVTNNIIPQAEGSSSSCPVNDDVTG-----VDEKKVLEGLSVLLVEDQAVLQRIG 80
E +P +N + +A S + +D T +D + VL+VED V Q++
Sbjct: 502 EINFLPKSNAEVKKASSPEESGVITNDSTAALTRELDPEASTPRAKVLVVEDAVVNQKVA 561
Query: 81 IRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140
ML+KLG V + +G+ V+ + +D+I MD
Sbjct: 562 KMMLEKLGVEVMIASNGQIGVD-------------------------MYQEHDFDMIFMD 596
Query: 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE 200
CQM +DG AT+ IR LE + IPIIA TA V + + +C+ +GMD F++KP +
Sbjct: 597 CQMPVLDGFGATKAIRNLE---QNTSHIPIIALTANVVKEEKDKCYEAGMDDFVSKPVSK 653
Query: 201 HLLAAAIVETIA 212
+L+A + + +A
Sbjct: 654 KVLSAVLEKHLA 665
>gi|407069151|ref|ZP_11099989.1| two-component sensor [Vibrio cyclitrophicus ZF14]
Length = 791
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L VL+VED V Q++ MLKKLG V + +GE VE
Sbjct: 652 KALFSGKVLVVEDSRVNQQVAKMMLKKLGFEVDIADNGEIGVEKF--------------- 696
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+ Y++I MDCQM +DG +AT+ IR LE + + + IPI+A TA V
Sbjct: 697 ----------KANEYEMIFMDCQMPVLDGFEATKQIRVLEED--SSKHIPIVALTANVVQ 744
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
++ CF+ GMD FL KP + L + +++ S S +EQ
Sbjct: 745 RDKHLCFDVGMDEFLPKPVNQGKLREIVEGFLSKDSESTSKNEQ 788
>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
Length = 641
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+KLG V + + GE A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGEDALR----------------------QC 548
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+TH +DLILMDCQM MDG AT IR++ E GQ +PIIA +A V ++++ CF
Sbjct: 549 QTH---QFDLILMDCQMPVMDGFIATENIRKM---GEWGQQVPIIALSANVIKEDQQRCF 602
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ F+ KP + L
Sbjct: 603 DAGMNEFVAKPVTKERL 619
>gi|413942530|gb|AFW75179.1| hypothetical protein ZEAMMB73_171957 [Zea mays]
Length = 1059
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 17/155 (10%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
++ K L G+ +LL ED VLQ I ++L +LGA VT+ ++G AV + + A +
Sbjct: 914 EDDKPLSGMQILLAEDTLVLQTIQKKVLNQLGALVTVAQNGAVAVNLLREALEQANASK- 972
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
E S Y +ILMDCQM MDG +AT++IR E E G PIIA TA
Sbjct: 973 ----------EDIVSLPYHVILMDCQMPEMDGYEATKLIR--EEEQRYGIHTPIIALTAH 1020
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
++ ++ F++GMD L KP +L IVE I
Sbjct: 1021 DMEEDLQKAFDAGMDLHLTKP----ILQKKIVEAI 1051
>gi|426405408|ref|YP_007024379.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
str. Tiberius]
gi|425862076|gb|AFY03112.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 838
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 32/154 (20%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K+ G VL+ EDQ V QR+ L KLG V + +G+ A
Sbjct: 596 KIFSG-HVLVAEDQIVNQRVAESYLTKLGLKVEIAGNGQIA------------------- 635
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
LE S YDLI MDCQM M+G +AT+ +R LE G+ P++A TA T+
Sbjct: 636 ------LEKARSKSYDLIFMDCQMPVMNGYEATKQLRLLENT--LGRKTPVVALTAEGTS 687
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ C+ +GMD FL KP + H ++ET+ R
Sbjct: 688 GERKSCYEAGMDDFLTKPLELH----KLIETLHR 717
>gi|359433721|ref|ZP_09224035.1| hypothetical protein P20652_2150 [Pseudoalteromonas sp. BSi20652]
gi|357919582|dbj|GAA60284.1| hypothetical protein P20652_2150 [Pseudoalteromonas sp. BSi20652]
Length = 215
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 27/151 (17%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D+ + G +LLVED + +++ +ML+ +T+ +DG +EA+ ++ N +
Sbjct: 87 DKTMAIVGKKILLVEDNFINRQVIAKMLEPSKVVITVAEDG---LEALNILKNKS----- 138
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+DLILMDCQM +MDG + T+ IR E E + G +PIIA TA
Sbjct: 139 -----------------FDLILMDCQMPNMDGYECTKYIR--ENERKNGTHVPIIAITAN 179
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
D+++ C N GMD F++KP H L I
Sbjct: 180 AYEDDKQRCLNVGMDDFVSKPISSHDLYTVI 210
>gi|375265667|ref|YP_005023110.1| histidine kinase [Vibrio sp. EJY3]
gi|369840988|gb|AEX22132.1| histidine kinase [Vibrio sp. EJY3]
Length = 1054
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 34/193 (17%)
Query: 16 KLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLS-----VLLV 70
K +L+ L FK P++ IP+ + + + P+ G + + LS VLLV
Sbjct: 883 KEKLDKAFGLRFKK-PLSAEHIPEVKDVTETSPLPAQRVG---EPTINALSLKTERVLLV 938
Query: 71 EDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHN 130
ED V Q++ +L K G + ++G+ AVE SN
Sbjct: 939 EDNRVNQKVASLLLNKAGYQYEIAENGQIAVE----------------KFQQDSN----- 977
Query: 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGM 190
+ +ILMDC M MDG +ATR IR E E ++ PIIA TA V D+ + CF+SGM
Sbjct: 978 ---FSVILMDCMMPVMDGFEATRQIRAFEKENGLKKT-PIIALTASVVDDDIQRCFDSGM 1033
Query: 191 DTFLNKPAQEHLL 203
D ++ KP ++ L
Sbjct: 1034 DAYVPKPVRKEKL 1046
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 25/138 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VL+V+D V Q+I L K G + ++G AV+ + HQ
Sbjct: 770 NVLIVDDNTVNQKIAGLHLTKAGFNFDIAENGVEAVDMF--------RKHQ--------- 812
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
Y LILMDC M MDG +AT IR++EA + IPIIA TA V D+ ++C
Sbjct: 813 --------YSLILMDCMMPVMDGFEATEHIRQIEASEQRPFRIPIIALTASVVDDDIQKC 864
Query: 186 FNSGMDTFLNKPAQEHLL 203
GMD ++ KP + +L
Sbjct: 865 LAVGMDDYIPKPFKADML 882
>gi|424035784|ref|ZP_17774949.1| his Kinase A domain protein, partial [Vibrio cholerae HENC-02]
gi|408897403|gb|EKM33193.1| his Kinase A domain protein, partial [Vibrio cholerae HENC-02]
Length = 607
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 31 PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAG 90
P T N+ G S++ + DE K +L+VED AV Q++ ML+KLG
Sbjct: 445 PQTPNVFDFPNGESNAITSECINSAKDEGKPW----ILVVEDTAVNQKVVRMMLEKLGMQ 500
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
V + + GE A L+ + +DLILMDCQM MDG
Sbjct: 501 VNVAEHGEEA-------------------------LQQCQAHKFDLILMDCQMPVMDGFI 535
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
AT IR+++ E GQ +PIIA +A V ++++ CF+ GM+ F+ KP + L
Sbjct: 536 ATENIRKMD---EWGQQVPIIALSANVIKEDQKRCFDVGMNEFVAKPVTKERL 585
>gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
Length = 1102
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVL--EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTL 93
+ Q E S +C TG E++ + + +LL ED + Q ++K+LG
Sbjct: 815 LTSQKEESIRNC------TGTTEQRPIFSQTTRILLAEDNRINQLYLTELVKQLGCQCDT 868
Query: 94 VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR 153
V +G+ A++A+ S HYDL+LMDCQM +DG +ATR
Sbjct: 869 VLNGQEAIDAVL-------------------------SSHYDLVLMDCQMPELDGLEATR 903
Query: 154 VIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAA 205
IR LE + +PIIA TA + +C ++GM+ +L+KP Q +H++
Sbjct: 904 RIRELEKRGQLKNKLPIIALTANAIKGDREKCLDAGMNEYLSKPVQSDHIITV 956
>gi|424030348|ref|ZP_17769832.1| his Kinase A domain protein [Vibrio cholerae HENC-01]
gi|408881972|gb|EKM20827.1| his Kinase A domain protein [Vibrio cholerae HENC-01]
Length = 641
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 32/173 (18%)
Query: 31 PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAG 90
P T N+ G S++ + DE K +L+VED AV Q++ ML+KLG
Sbjct: 479 PQTPNVFDFPNGESNAITSECINSAKDEGKPW----ILVVEDTAVNQKVVRMMLEKLGMQ 534
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
V + + GE A L+ + +DLILMDCQM MDG
Sbjct: 535 VNVAEHGEEA-------------------------LQQCQAHKFDLILMDCQMPVMDGFI 569
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
AT IR+++ E GQ +PIIA +A V ++++ CF+ GM+ F+ KP + L
Sbjct: 570 ATENIRKMD---EWGQQVPIIALSANVIKEDQKRCFDVGMNEFVAKPVTKERL 619
>gi|387814447|ref|YP_005429932.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal, partial
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381339462|emb|CCG95509.1| putative Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal precursor
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 644
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 26/145 (17%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
L+VED V Q++ +L+K G V +G AV +I+N H G
Sbjct: 523 LVVEDNLVNQKVTEALLRKFGFQTECVTNGTDAV-------------RRIKNDHEG---- 565
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECF 186
YD+ILMDCQM MDG ATR+IR + E GQS +PIIA TA V+ D E+ C
Sbjct: 566 ------YDVILMDCQMPVMDGYDATRMIR--DWEQGNGQSGVPIIALTADVSEDTEKACK 617
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+GM+ +L KP + L + I
Sbjct: 618 EAGMNDYLTKPVRRDTLREVLSRWI 642
>gi|451946365|ref|YP_007466960.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905713|gb|AGF77307.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 932
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 25/132 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VL+ ED Q++ + +L+KLG VTL K+G+ A
Sbjct: 669 NVLVAEDNVTNQQVAMGVLRKLGCKVTLTKNGQEA------------------------- 703
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
L+ +D++LMDCQM MDG +AT IRRLE + G+ P++A TA + +C
Sbjct: 704 LQFFEKNSFDIVLMDCQMPRMDGYEATSAIRRLENMKDRGKRTPVVALTANALTGDREKC 763
Query: 186 FNSGMDTFLNKP 197
+GMD +++KP
Sbjct: 764 LAAGMDDYISKP 775
>gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 756
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 27/147 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
V L++LLVED V Q + MLKKLG VTL ++G+ A+EA+ GK
Sbjct: 626 VSRALNLLLVEDNQVNQVVASSMLKKLGHTVTLAENGKQALEALQ---QGEGK------- 675
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+D++LMDCQM MDG +ATR IR E +++P+IA TA V
Sbjct: 676 -------------FDIVLMDCQMPVMDGYEATRTIR----ENPEWRNLPVIAVTANVMQG 718
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAI 207
+ +C SGM+ ++ KP L + I
Sbjct: 719 DRDDCIESGMNDYITKPYNRADLKSII 745
>gi|388601250|ref|ZP_10159646.1| Signal transduction histidine kinase [Vibrio campbellii DS40M4]
Length = 1000
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 26/151 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G+ AVE KN
Sbjct: 718 ILVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMF-------AKNQ----------- 759
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT+ IR+LE E G PIIA TA V D+ ++CF
Sbjct: 760 -------YALILMDCMMPVMDGFEATKRIRQLEKEVHRGYRTPIIALTASVVDDDIQKCF 812
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI-ARKSH 216
+ GMD ++ KP + +L + + + ARKS+
Sbjct: 813 DVGMDDYVPKPFKAAVLKDKLSKAVEARKSN 843
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ A++
Sbjct: 881 ILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDM----------------------F 918
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ NS +D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ + C+
Sbjct: 919 QQDNS--FDIILMDCMMPVMDGFEATKEIRAYEKVSGLPKT-PIIALTASVVDDDIQRCY 975
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 976 DSGMDAYVPKPVRKEKL 992
>gi|390597540|gb|EIN06939.1| hypothetical protein PUNSTDRAFT_135640 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1070
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 30/149 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + QR+G ++L+ LG V DG+ AV+
Sbjct: 944 VLLVEDNLINQRLGKKLLESLGYDVITANDGQQAVD------------------------ 979
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
T D MDCQM MDG ATR IR +E + +PI+A TA VT+++E +C
Sbjct: 980 -TVAEETVDCCFMDCQMPVMDGFDATRRIREMEVAGTLKRHLPIVALTANVTSESEEQCR 1038
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
N+GM+ F+ KP L A +ET+ R +
Sbjct: 1039 NAGMEFFMPKP-----LRLADLETVLRNA 1062
>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
Length = 1000
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G+ AVE KN
Sbjct: 718 ILVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMF-------AKNQ----------- 759
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT+ IR+LE E G IPIIA TA V D+ ++CF
Sbjct: 760 -------YALILMDCMMPVMDGFEATKRIRQLEKEVNRGYRIPIIALTASVVDDDIQKCF 812
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + +L
Sbjct: 813 DVGMDDYVPKPFKAAVL 829
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ A++
Sbjct: 881 ILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDM----------------------F 918
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ NS +D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ + C+
Sbjct: 919 QQDNS--FDIILMDCMMPVMDGFEATKEIRAYEKVSGLPKT-PIIALTASVVDDDIQRCY 975
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 976 DSGMDAYVPKPVRKEKL 992
>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 823
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 65/131 (49%), Gaps = 27/131 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q +G ML+ LG V +V+DG AAV N QN
Sbjct: 565 VLLVEDNPVNQEVGKGMLESLGCRVKVVEDGLAAV------------NEVRQN------- 605
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDL+ MDCQM MDG +ATR IR E TG +P+IA TA + C
Sbjct: 606 ------RYDLVFMDCQMPVMDGLEATRRIR--AREEGTGNRVPVIALTAYAMKGDRLACL 657
Query: 187 NSGMDTFLNKP 197
+G D +L+KP
Sbjct: 658 EAGADEYLSKP 668
>gi|120554284|ref|YP_958635.1| integral membrane sensor hybrid histidine kinase [Marinobacter
aquaeolei VT8]
gi|120324133|gb|ABM18448.1| integral membrane sensor hybrid histidine kinase [Marinobacter
aquaeolei VT8]
Length = 644
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 26/145 (17%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
L+VED V Q++ +L+K G V +G AV +I+N H G
Sbjct: 523 LVVEDNLVNQKVTEALLRKFGFQTECVTNGTDAV-------------RRIKNDHEG---- 565
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECF 186
YD+ILMDCQM MDG ATR+IR + E GQS +PIIA TA V+ D E+ C
Sbjct: 566 ------YDVILMDCQMPVMDGYDATRMIR--DWEQGNGQSGVPIIALTADVSEDTEKACK 617
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+GM+ +L KP + L + I
Sbjct: 618 EAGMNDYLTKPVRRDTLREVLSRWI 642
>gi|242094944|ref|XP_002437962.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
gi|241916185|gb|EER89329.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
Length = 1035
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 17/155 (10%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
++ K L G+ +LL ED VLQ I ++L +LGA VT+ DG AV + + A
Sbjct: 892 EDDKPLAGMQILLAEDTFVLQTIQRKILNQLGATVTVAVDGSVAVNLLKQALEQA----- 946
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ S E P Y +I MDCQM +MDG +AT++IR E E G PIIA TA
Sbjct: 947 -----NVSGEEIVPLP-YHVIFMDCQMPNMDGYEATKLIR--EEEQRYGIHTPIIALTAH 998
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
T ++ ++ ++GMD L KP +L IVE +
Sbjct: 999 DTQEDLQKAIDAGMDLHLTKP----ILGKKIVEAV 1029
>gi|344343091|ref|ZP_08773961.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
gi|343805643|gb|EGV23539.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
Length = 787
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 86/192 (44%), Gaps = 32/192 (16%)
Query: 41 EGSSSSCPVNDDV------TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94
E CP D+ G + L G VLLVED V Q + ML+ LG V +
Sbjct: 507 EACGRVCPGTLDIDQVESELGPEPDSTLRG-RVLLVEDNPVNQEMATLMLEDLGLEVAIA 565
Query: 95 KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRV 154
+G+ AV+A H++ +DLILMDC M MDG AT
Sbjct: 566 DNGDEAVKAFA-----------------------HDA--FDLILMDCHMPVMDGFSATAA 600
Query: 155 IRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
IRR E E +PIIA TA V E+ C +GM+ +L+KP + LAA I +
Sbjct: 601 IRRCEREQGAVSPVPIIALTANVQKGIEQRCDEAGMNGYLSKPFSQRQLAARIAPWVVAT 660
Query: 215 SHKFSCDEQAEA 226
S + + ++ A
Sbjct: 661 SPEVAGGDETPA 672
>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
Length = 850
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ ML+KLG V + +G+ V+
Sbjct: 718 VLVVEDTVVNQKVAKMMLEKLGVEVMIASNGQIGVDM----------------------- 754
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +D+I MDCQM +DG +AT+ IR LE + IPIIA TA V + + +C+
Sbjct: 755 --YQEHDFDIIFMDCQMPVLDGFEATKAIRNLE---QNTSHIPIIALTANVVKEEKDKCY 809
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD F++KP + +L+A +
Sbjct: 810 EAGMDDFVSKPVSKKVLSAVM 830
>gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis ANT/505]
Length = 1587
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 32/190 (16%)
Query: 22 GLQLEFKPVPVTNNIIPQAEGSSSSCPVNDD--------VTGVDEKKVLEGLSVLLVEDQ 73
G Q F P PVT + A +S ++ ++ + ++KV E +LLVED
Sbjct: 1414 GFQAYF-PKPVTTADLISALSVITSNDADETLPLVTSGYISSLKKEKVQEPTQILLVEDN 1472
Query: 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133
+ +++ MLKKL VT+ ++G+ A++ LE+H+S
Sbjct: 1473 PINRQVATLMLKKLNCDVTIAENGQLAIDI----------------------LESHDSGF 1510
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+ L+LMDCQM MDG T IR+ A + ++I IIA TA ++ C +GMD +
Sbjct: 1511 FKLVLMDCQMPVMDGFATTAAIRKGMAGIQ-HKNIRIIAITANAMDSDKERCITAGMDDY 1569
Query: 194 LNKPAQEHLL 203
L+KP Q +L
Sbjct: 1570 LSKPIQLDIL 1579
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 29/149 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+E L+VL+V+D + + + L+ GA V L D A++ +
Sbjct: 1310 MEELTVLVVDDNETNRIVISQQLEHWGAKVALACDAREALDMCAQQYKS----------- 1358
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFTALVT 178
N+ YD+ ++D QM MDG CKA + E +S+P++ T++
Sbjct: 1359 --------NNCMYDIAVLDMQMPGMDGIELCKALKA-------HEHYKSMPLVMMTSIAG 1403
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + N+G + KP L +A+
Sbjct: 1404 MEGAQRYSNAGFQAYFPKPVTTADLISAL 1432
>gi|444424360|ref|ZP_21219818.1| Signal transduction histidine kinase [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444242355|gb|ELU53869.1| Signal transduction histidine kinase [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 1000
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G+ AVE KN
Sbjct: 718 ILVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMF-------AKNQ----------- 759
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT+ IR+LE E G IPIIA TA V D+ ++CF
Sbjct: 760 -------YALILMDCMMPVMDGFEATKRIRQLEKEVHRGYRIPIIALTASVVDDDIQKCF 812
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + +L
Sbjct: 813 DVGMDDYVPKPFKAAVL 829
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ A++
Sbjct: 881 ILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDM----------------------F 918
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ NS +D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ + C+
Sbjct: 919 QQDNS--FDIILMDCMMPVMDGFEATKEIRAYEKVSGLPKT-PIIALTASVVDDDIQRCY 975
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 976 DSGMDAYVPKPVRKEKL 992
>gi|302784312|ref|XP_002973928.1| pseudo response regulator [Selaginella moellendorffii]
gi|300158260|gb|EFJ24883.1| pseudo response regulator [Selaginella moellendorffii]
Length = 176
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 79/156 (50%), Gaps = 27/156 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ R+L+K G VT+V DG A+ A+
Sbjct: 43 ILLVEDNLVNQKVASRLLQKHGHIVTVVGDGVQAIAAVD--------------------- 81
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG-QSIPIIAFTALVTADNEREC 185
N + DLILMD QM MDG +ATR IR E EA G + +PII TA E C
Sbjct: 82 --ANRDNIDLILMDIQMPIMDGLEATRRIR--EQEARDGLRKMPIIGLTAHAMRGYEDTC 137
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCD 221
F++GMD+++ KP + L AAI E +A + D
Sbjct: 138 FSAGMDSYMGKPFEIRKLLAAI-EMVATGKQEIHID 172
>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
Length = 1054
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G + +G+ AVE KN
Sbjct: 772 ILVVDDNTVNQKIAGLHVTKAGYEFDIAANGQEAVEMF-------AKNQ----------- 813
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT+ IR+LE E+ G IPIIA TA V D+ ++CF
Sbjct: 814 -------YALILMDCMMPVMDGFEATKRIRQLEKESNRGYQIPIIALTASVVDDDIQKCF 866
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + +L
Sbjct: 867 DVGMDDYVPKPFKAPIL 883
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ A++
Sbjct: 935 ILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDM----------------------F 972
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ NS +D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ + C+
Sbjct: 973 QQDNS--FDIILMDCMMPVMDGFEATKEIRAYEKVSGLPKT-PIIALTASVVDDDIQRCY 1029
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 1030 DSGMDAYVPKPVRKEKL 1046
>gi|334138589|ref|ZP_08512005.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
gi|333603872|gb|EGL15270.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
Length = 1038
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+VED V +++ I+ L+KLG G + ++G AVEA+T
Sbjct: 910 LKILVVEDHPVNRQLFIKFLEKLGYGADIAENGMEAVEAVT------------------- 950
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YDL+ MD QM MDG +ATR+IR+L +GQ+ IIA TA V ++ +
Sbjct: 951 ------STEYDLVFMDLQMPVMDGLQATRLIRQL---LPSGQNPVIIAVTASVRPADKEK 1001
Query: 185 CFNSGMDTFLNKP 197
C SGM F++KP
Sbjct: 1002 CLESGMQDFISKP 1014
>gi|218676627|ref|YP_002395446.1| histidine kinase [Vibrio splendidus LGP32]
gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32]
Length = 1067
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q+I + K G +G+ AV+
Sbjct: 779 ILIVEDNKVNQKIAGLHVGKSGFEFEFANNGQEAVDMF---------------------- 816
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
++PHY ILMDC M MDG +AT IRR+E E + IPIIA TA V D+ + CF
Sbjct: 817 --RSNPHYAAILMDCMMPVMDGFEATSNIRRVEKETNATRRIPIIALTASVIDDDIQRCF 874
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + +L ++ +
Sbjct: 875 DVGMDDYVPKPFKFEMLKEKVLAAV 899
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 27/138 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ ML + G + ++G+ AV+
Sbjct: 947 ILLVEDNRVNQKVASVMLTRAGYAFEIAENGQIAVDMY---------------------- 984
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
N +D+ILMDC M MDG AT+ IR E E G S PIIA TA V D+ ++C
Sbjct: 985 --QNDSSFDIILMDCMMPVMDGFTATKEIR--EHEKNLGLSKTPIIALTASVIDDDIQKC 1040
Query: 186 FNSGMDTFLNKPAQEHLL 203
F+SGMD ++ KP ++ L
Sbjct: 1041 FDSGMDGYVAKPVRKEKL 1058
>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 888
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 28/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+GL +LL ED + Q++ + +L+ +GA V++ +G A+E +
Sbjct: 543 FDGLRILLAEDNELNQQVALELLRAVGADVSIAGNGAIALEMVA---------------- 586
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
HYDLILMD QM MDG ATR++R E + GQ PI+A TA V A +
Sbjct: 587 ---------QTHYDLILMDMQMPVMDGLAATRLLRERE---DVGQHTPILAMTANVMAGD 634
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
C +GMD + KP L AA+
Sbjct: 635 RERCLAAGMDDHIAKPIDPDRLYAAL 660
>gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222]
gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222]
Length = 1067
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q+I + K G +G+ AV+
Sbjct: 779 ILIVEDNKVNQKIAGLHVGKSGFEFEFANNGQEAVDMF---------------------- 816
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
++PHY ILMDC M MDG +AT IRR+E E + IPIIA TA V D+ + CF
Sbjct: 817 --RSNPHYAAILMDCMMPVMDGFEATSNIRRVEKETNATRRIPIIALTASVIDDDIQRCF 874
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + +L ++ +
Sbjct: 875 DVGMDDYVPKPFKFEMLKEKVLAAV 899
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 27/138 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ ML + G + ++G+ AV+
Sbjct: 947 ILLVEDNRVNQKVASVMLTRAGYAFEIAENGQIAVDMY---------------------- 984
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
N +D+ILMDC M MDG AT+ IR E E G S PIIA TA V D+ ++C
Sbjct: 985 --QNDSSFDIILMDCMMPVMDGFTATKEIR--EHEKNLGLSKTPIIALTASVIDDDIQKC 1040
Query: 186 FNSGMDTFLNKPAQEHLL 203
F+SGMD ++ KP ++ L
Sbjct: 1041 FDSGMDGYVAKPVRKEKL 1058
>gi|406891851|gb|EKD37359.1| PAS/GAF protein, partial [uncultured bacterium]
Length = 135
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 29/136 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GL +L+ ED A ++++ ML++L V +DG VE
Sbjct: 12 LAGLRLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVE------------------- 52
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YDLILMD QM MDG +ATR IR E E G IPIIA TA ++
Sbjct: 53 ------MWRQGEYDLILMDVQMPRMDGFQATRAIR----EQEQGGRIPIIAMTAHAMKED 102
Query: 182 ERECFNSGMDTFLNKP 197
+R C ++GMD +++KP
Sbjct: 103 QRRCLDAGMDDYISKP 118
>gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB]
gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB]
Length = 1023
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 29/150 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLLVED+ + Q + MLK++G V L DGE A++ M+ G
Sbjct: 897 GSRVLLVEDEPINQEVATEMLKEIGLVVDLATDGEQALD----MVQRTG----------- 941
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDLILMD QM M+G +AT+ IR+L A AE +PI+A TA ++ +
Sbjct: 942 ----------YDLILMDLQMPKMNGIEATQAIRQLPAGAE----VPIVAMTANAFTEDRQ 987
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C ++GM+ + KP LL +++ + R
Sbjct: 988 RCLDAGMNDHIGKPVDPELLFEILLKWLGR 1017
>gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 639
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+KLG V + + GE A++ + HQ
Sbjct: 509 ILVVEDTAVNQKVVRIMLEKLGMQVNVAEHGEEALQQC--------QEHQ---------- 550
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMDCQM MDG AT IR++ E GQ +PIIA +A V ++++ CF
Sbjct: 551 -------FDLILMDCQMPVMDGFIATENIRKM---GEWGQQVPIIALSANVIKEDQQRCF 600
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GM+ F+ KP + L
Sbjct: 601 DVGMNEFVAKPVTKERL 617
>gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
Length = 809
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ MLKKLG V + +GE VE
Sbjct: 676 VLVVEDSRVNQQVAKMMLKKLGFEVDIADNGEIGVEKF---------------------- 713
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y++I MDCQM +DG +AT+ IR LE + Q IPI+A TA V ++ CF
Sbjct: 714 ---QANEYEMIFMDCQMPVLDGFEATKQIRALEEGS--SQHIPIVALTANVVQRDKHLCF 768
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ GMD FL KP + L + +++++
Sbjct: 769 DVGMDEFLPKPVNQGKLREIVASFLSKET 797
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 33/163 (20%)
Query: 56 VDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG--EAAVEAMTLMINAAG 112
VDE + +SVLLV+D + RI L+ G VK E A +A+ L+ +
Sbjct: 476 VDESNIDFNKVSVLLVDDSQLNMRITSTQLQSFG-----VKSECCETATQALELVSESVA 530
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR-VIRRLEAEAETGQSIP-I 170
K+ SP YDL+L+D M S+DG + R +I R + ++ P +
Sbjct: 531 KS----------------SP-YDLVLIDKVMPSIDGFQLARSLIERFD------KACPKL 567
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ +A +E G ++ +P Q++ L + E +AR
Sbjct: 568 VMISADPRKQDEERAKQVGFVAYIARPYQDNQLKWTLSEVLAR 610
>gi|410465886|ref|ZP_11319059.1| signal transduction histidine kinase [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981092|gb|EKO37713.1| signal transduction histidine kinase [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 807
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 29/153 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
+ L G VLLVED A+ Q++ L+ LGA V + +G AVE +
Sbjct: 308 RPLSGTLVLLVEDNAINQQVARETLETLGAAVDVAINGREAVEMV--------------- 352
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
S YD++LMD QM MDG ATR IR+L + AE +PI+A TA A
Sbjct: 353 ----------RSSLYDVVLMDVQMPVMDGLAATRAIRQLSSTAE----LPIVALTAHALA 398
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
++ C +GM+ +L KP + L A++ + IA
Sbjct: 399 EDRERCLEAGMNDYLTKPLEVDRLLASLGQWIA 431
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRL---EAEAETGQSIPIIAFTALVTADNER 183
E + +DLILMD +M MDG A R IRRL +PI+A T+ + +
Sbjct: 627 EKPDGRPFDLILMDIEMPEMDGPTAARTIRRLLGASVSPPCAPGVPIVALTSHDCKNEQA 686
Query: 184 ECFNSGMDTFLNK 196
C ++GMD L+K
Sbjct: 687 RCQDAGMDACLHK 699
>gi|334343013|ref|YP_004555617.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
gi|334103688|gb|AEG51111.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
Length = 914
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 27/133 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+ ED AV QR+ +R+L+K G V +V DG AVEA+
Sbjct: 781 LHVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALA------------------- 821
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++LMD QM MDG +AT IR E E TGQ +PI+A TA +
Sbjct: 822 ------QDSFDVVLMDVQMPEMDGFQATAAIR--ERERGTGQHMPIVAMTAHAMRGDRER 873
Query: 185 CFNSGMDTFLNKP 197
C +GMD +++KP
Sbjct: 874 CLAAGMDDYISKP 886
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E+ L GL VL+V+D A +RI M++ G V+ G A+ A+ NAAG +
Sbjct: 631 EQPSLHGLPVLIVDDNATNRRILDEMIRGWGMKPLAVESGPKALAALR---NAAGIGRPL 687
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+ L+L+D M MDG + I R + +I ++
Sbjct: 688 R-----------------LVLLDMMMPDMDGFAVAKEIARGGGDERPA----VIMLSSAQ 726
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ R + +G+ FL KP ++ L AI
Sbjct: 727 KDEMARRNWATGIAAFLLKPVRQSELLEAI 756
>gi|407916049|gb|EKG09493.1| hypothetical protein MPH_13453 [Macrophomina phaseolina MS6]
Length = 462
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
+P + + P N + E+K ++ +L+VED V Q+I M+KK G V V +
Sbjct: 285 LPGNGNFNYAAPDNPSILPFWERKTVK---ILIVEDNQVNQQIAQNMIKKQGFSVNAVWN 341
Query: 97 GEAAVEAMTLMINAA-GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
G+ AV+ +INA GK + P D+ILMD QM +DG +ATR+I
Sbjct: 342 GKEAVD---YLINAKQGK---------------RDRP--DIILMDVQMPIIDGYRATRII 381
Query: 156 R--RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
R +L ++ +SIPIIA TA ++ +C + GMD +L+KP E + +
Sbjct: 382 RTGKLFMDSPDIRSIPIIAMTASAIRGDKEKCQDVGMDDYLSKPVLEKIRKSKQTHRSKH 441
Query: 214 KSHKFSCDEQ 223
++ SC EQ
Sbjct: 442 QNLLLSCHEQ 451
>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
Length = 1014
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 73/155 (47%), Gaps = 31/155 (20%)
Query: 43 SSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102
S + CP T K VLLVED V Q++ ML+KLG VTL DG+ A+
Sbjct: 729 SQTPCPNPASETSTPTKA-----RVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALT 783
Query: 103 AMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEA 162
A + +SP +DL+ MDCQM +MDG +ATR IR E +
Sbjct: 784 AYS------------------------HSP-FDLLFMDCQMPNMDGYEATRAIRADEKQH 818
Query: 163 ETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ PIIA TA + C +GMD +L KP
Sbjct: 819 HK-TTCPIIAMTAHTLPGDRERCLKAGMDDYLGKP 852
>gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36]
gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36]
Length = 768
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 30/151 (19%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
T V+E + + VLLVED + Q++ ML+KLG VT+ +G+ AV+ + G
Sbjct: 620 TVVEETVAADEMQVLLVEDTLINQKVTKMMLQKLGIVVTIADNGQIAVD----LCKEQG- 674
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET-GQSIPIIA 172
++LILMDCQM +DG AT++IR ++ET GQ PIIA
Sbjct: 675 --------------------FNLILMDCQMPVLDGFDATKIIR----DSETAGQHTPIIA 710
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLL 203
TA V + +CF +GMD F+ KP + +L
Sbjct: 711 LTANVLQIEKDKCFAAGMDDFIAKPVSKQVL 741
>gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
Length = 808
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 27/157 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ MLKKLG V + +GE VE
Sbjct: 676 VLVVEDSRVNQQVAKMMLKKLGFEVDIADNGEIGVEKF---------------------- 713
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y++I MDCQM +DG +AT+ IR LE T + IPI+A TA V ++ CF
Sbjct: 714 ---QANEYEMIFMDCQMPVLDGFEATKQIRALEEG--TSKHIPIVALTANVVQRDKHLCF 768
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
+ GMD FL KP + L + +++ + +EQ
Sbjct: 769 DVGMDEFLPKPVNQGKLREIVASFLSKGTESSKENEQ 805
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 56 VDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG--EAAVEAMTLMINAAG 112
VDE + +SVLLV+D + RI L+ G VK E A +A+ L+ +
Sbjct: 476 VDESNIDFNKVSVLLVDDSQLNMRITSTQLQSFG-----VKSECCETATQALELVSESVA 530
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR-VIRRLEAEAETGQSIP-I 170
K S YDL+L+D M S+DG + R +I R + ++ P +
Sbjct: 531 K-----------------SLPYDLVLIDKVMPSIDGFQLARSLIERFD------KACPKL 567
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ +A +E G ++ +P Q++ L + E +AR +
Sbjct: 568 VMISADPRKQDEARAKQVGFVAYIARPYQDNQLKWTLSEVLARSA 612
>gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter
aquaeolei VT8]
gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter
aquaeolei VT8]
Length = 782
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 32/166 (19%)
Query: 42 GSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAV 101
G S+ P TG ++ + L++LLVED V Q + +LKKLG V ++G A+
Sbjct: 635 GGQSTRPDRSLGTG---QQPIPALNILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRAL 691
Query: 102 EAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE 161
EA+ QN YDL+LMDCQM MDG +ATR IR +
Sbjct: 692 EAL-------------QN------------KTYDLVLMDCQMPVMDGYEATRAIR----Q 722
Query: 162 AETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
Q++P+IA TA V + +C SGM+ ++ KP L A I
Sbjct: 723 NPQWQTLPVIAVTANVMQGDREDCLASGMNDYITKPYNRDELRAVI 768
>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 1042
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 27/170 (15%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
T V + + L +LL ED V Q++ +R+L+K G V + +G AVEA
Sbjct: 781 TLVADLPAVRSLHILLAEDNEVNQKLAVRLLQKRGHSVVVANNGREAVEA---------- 830
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAF 173
S YDL+LMD QM MDG +AT IR EA +G + I+A
Sbjct: 831 ---------------SESRKYDLVLMDVQMPEMDGIQATIAIR--AREAGSGARLAIVAM 873
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
TALV + C + MD +L+KP + L A + ARK+ + E+
Sbjct: 874 TALVMKGDRERCMAADMDGYLSKPIRPQELDAVLETYTARKTAEMIVREE 923
>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 584
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 28/155 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
++ L+G VLLVED AV Q + L++ G V+L KDG AV
Sbjct: 456 QRRLQG-RVLLVEDNAVNQLVAQAFLQRFGLQVSLAKDGLEAVRM--------------- 499
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR-RLEAEAETGQS-IPIIAFTAL 176
T P +DL+LMDCQM +DG +AT+ IR R +A TG++ +PIIA TA
Sbjct: 500 ---------TAEQP-FDLVLMDCQMPELDGFEATQQIRAREKARGSTGRAAMPIIALTAN 549
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
V + CF+SGM+ F+ KP ++ L A + +
Sbjct: 550 VFEGDRERCFSSGMNDFIAKPFKQDELYAVLARWL 584
>gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B]
gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B]
Length = 1060
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M GK
Sbjct: 941 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQKDGK------------- 983
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +A+R IR EA ++ PIIA TA V D+ + CF
Sbjct: 984 -------FDVILMDCMMPIMDGFEASRQIRAYEASKGLAKT-PIIALTASVVDDDIQRCF 1035
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD ++ KP ++ L I
Sbjct: 1036 DSGMDAYVPKPVRKEKLLYQI 1056
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G + +G+ AVE QN
Sbjct: 778 ILVVDDNTVNQKIAGLHVTKAGFDFDVAVNGQEAVEKFQ------------QN------- 818
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT++IR++E + + IPIIA TA V D+ ++CF
Sbjct: 819 ------QYSLILMDCMMPVMDGFEATQIIRQIEVKEKRAFRIPIIALTASVVDDDIQKCF 872
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + LL
Sbjct: 873 DVGMDDYVPKPFKAGLL 889
>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
Length = 1058
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M GK
Sbjct: 939 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQKDGK------------- 981
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +A+R IR EA ++ PIIA TA V D+ + CF
Sbjct: 982 -------FDVILMDCMMPIMDGFEASRQIRAYEASKGLAKT-PIIALTASVVDDDIQRCF 1033
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD ++ KP ++ L I
Sbjct: 1034 DSGMDAYVPKPVRKEKLLYQI 1054
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G + +G+ AVE QN
Sbjct: 776 ILVVDDNTVNQKIAGLHVTKAGFDFDVAVNGQEAVEQFQ------------QN------- 816
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT++IR++E + + IPIIA TA V D+ ++CF
Sbjct: 817 ------QYSLILMDCMMPVMDGFEATQIIRQIEVKEKRAFRIPIIALTASVVDDDIQKCF 870
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + LL
Sbjct: 871 DVGMDDYVPKPFKARLL 887
>gi|388598994|ref|ZP_10157390.1| histidine kinase [Vibrio campbellii DS40M4]
Length = 641
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+KLG V + + G+ A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDALR----------------------QC 548
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+TH +DLILMDCQM MDG AT IR++ E GQ +PIIA +A V ++++ CF
Sbjct: 549 QTH---QFDLILMDCQMPVMDGFIATENIRKM---GEWGQQVPIIALSANVIKEDQQSCF 602
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ F+ KP + L
Sbjct: 603 DAGMNEFVAKPVTKERL 619
>gi|332531231|ref|ZP_08407144.1| Proline sensor PrlS [Hylemonella gracilis ATCC 19624]
gi|332039338|gb|EGI75751.1| Proline sensor PrlS [Hylemonella gracilis ATCC 19624]
Length = 1317
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 33/160 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GL +LLVED + Q + RML + GA + + +G+ A++A+ NAA
Sbjct: 918 LAGLRLLLVEDNLINQEVARRMLSREGAEIRVAGNGQQALDAL----NAA---------- 963
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET------GQS----IPII 171
YDL+LMD QM +DG +ATR IRR A A+T GQ+ +PII
Sbjct: 964 ---------PAAYDLVLMDMQMPVLDGLQATRAIRRQGARAQTAPDARPGQAGWLKLPII 1014
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
A TA + + C ++GM+ + KP ++ LL ++ +
Sbjct: 1015 AMTANAMVSDRQACLDAGMNDHIGKPFEQELLIQRVLHHV 1054
>gi|409052054|gb|EKM61530.1| hypothetical protein PHACADRAFT_248203 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1089
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 69/141 (48%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q +G R+L+KLG V +G+ AVE +
Sbjct: 964 ILLVEDNMVNQHLGKRLLEKLGYAVETASNGQEAVEKAS--------------------- 1002
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y MDCQM +DG AT+ IR LE +PIIA TA V+ ++E +C
Sbjct: 1003 ----QSRYFCCFMDCQMPVLDGFMATQKIRELENNGTIHGRLPIIALTANVSTESEEKCR 1058
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD FL KP + H L +A+
Sbjct: 1059 AAGMDHFLPKPFRMHDLQSAL 1079
>gi|444427798|ref|ZP_21223166.1| histidine kinase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238949|gb|ELU50532.1| histidine kinase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 641
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+KLG V + + G+ A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDALR----------------------QC 548
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+TH +DLILMDCQM MDG AT IR++ E GQ +PIIA +A V ++++ CF
Sbjct: 549 QTH---QFDLILMDCQMPVMDGFIATENIRKM---GEWGQQVPIIALSANVIKEDQQSCF 602
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ F+ KP + L
Sbjct: 603 DAGMNEFVAKPVTKERL 619
>gi|383756738|ref|YP_005435723.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
gi|381377407|dbj|BAL94224.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
Length = 1182
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VLL ED + Q++ + +L +LG V + ++G AVE +
Sbjct: 925 LRGRRVLLAEDNDLNQQVAVELLSELGLEVDVAENGLVAVEKV----------------- 967
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S HYDL+LMD QM MDG ATR IR L A +PI+A TA +
Sbjct: 968 --------RSTHYDLVLMDMQMPEMDGLSATRAIRALPGAAR----LPIVAMTANAMQGD 1015
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+ C N+GMD + KP + LA ++ + R+
Sbjct: 1016 VQRCLNAGMDDHIAKPIDPNRLATQLLACLVRR 1048
>gi|345878485|ref|ZP_08830197.1| protein tyrC [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224516|gb|EGV50907.1| protein tyrC [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 340
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 42/202 (20%)
Query: 27 FKPVPVTNNIIPQA-EGSSSSCPVNDDVTGVDEKKVLEGLS------------VLLVEDQ 73
KPVP + I+ +A EG S+ + + + + V+EG + +LLVED
Sbjct: 34 IKPVP--HQILHEAIEGVVSNTLQHKEQEIITQYHVIEGHTQPSNKTEHIDAKILLVEDL 91
Query: 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133
Q++ +L K+G V + +G A+E +
Sbjct: 92 LPNQKVASSVLSKMGCTVEIADNGRIALERLA-------------------------EDS 126
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+D++LMDCQM MDG +ATR IR + E +TG PIIA TA A + ++C +GMD F
Sbjct: 127 FDIVLMDCQMPEMDGLEATRAIR--QRERDTGTHTPIIAMTANNMASDRKQCLEAGMDDF 184
Query: 194 LNKPAQEHLLAAAIVETIARKS 215
++KP + LA + + + KS
Sbjct: 185 ISKPFEREQLAKLLGKWLNPKS 206
>gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
Length = 838
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 31/147 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+ EDQ V QR+ L KLG V + +G+ A L
Sbjct: 602 VLVAEDQIVNQRVAESYLTKLGLKVEIAGNGQIA-------------------------L 636
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
E S YDLI MDCQM ++G +AT+ +R LE G+ P++A TA T+ + C+
Sbjct: 637 EKARSKSYDLIFMDCQMPVLNGYEATKQLRLLENT--LGRKTPVVALTAEGTSGERKSCY 694
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+GMD FL KP + H ++ET+ R
Sbjct: 695 EAGMDDFLTKPLELH----KLIETLHR 717
>gi|357040435|ref|ZP_09102222.1| ATP-binding region ATPase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
gi|355356526|gb|EHG04312.1| ATP-binding region ATPase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
Length = 2053
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 26/134 (19%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
++L+VED A+ Q++ + LK+LG +V +G+ AVEA++
Sbjct: 1792 TILVVEDNAINQKLIVSQLKQLGLCAEIVNNGKEAVEAVS-------------------- 1831
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
S Y L+L+DCQM MDG + IRRLEA G+ PIIA TA V +C
Sbjct: 1832 -----SAKYTLVLLDCQMPVMDGYETAGAIRRLEATG-GGRRTPIIATTAGVMTGEREKC 1885
Query: 186 FNSGMDTFLNKPAQ 199
++GMD +L+KP +
Sbjct: 1886 LSAGMDDYLSKPVR 1899
>gi|410641419|ref|ZP_11351939.1| sensory box histidine kinase/response regulator [Glaciecola
chathamensis S18K6]
gi|410138952|dbj|GAC10126.1| sensory box histidine kinase/response regulator [Glaciecola
chathamensis S18K6]
Length = 523
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 85/167 (50%), Gaps = 35/167 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
EGL VLLVED + Q + + +LK L V + DG +EA+ L
Sbjct: 390 FEGLQVLLVEDNEINQEVMLAILKGLDVNVFIANDG---LEALA-------------TLS 433
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H L+ +DLILMDCQM ++DG +ATR IR EA E IPI A TA V D+
Sbjct: 434 HSQRLK------FDLILMDCQMPNLDGYEATRRIRAGEA-GEIFSHIPIAALTANVM-DS 485
Query: 182 ER-ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
ER +C +GM+ +L KP + L + +V K HK QA AQ
Sbjct: 486 ERVKCIEAGMNEYLTKPVEIEALKSVLV-----KYHK-----QAPAQ 522
>gi|417947712|ref|ZP_12590863.1| putative two-component sensor [Vibrio splendidus ATCC 33789]
gi|342810750|gb|EGU45821.1| putative two-component sensor [Vibrio splendidus ATCC 33789]
Length = 796
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 28/163 (17%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VL VL+VED V Q++ MLKKLG V + +G+ V+
Sbjct: 658 VLFSGKVLVVEDSRVNQQVAKMMLKKLGFEVDIADNGKVGVDKFK--------------- 702
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
HN Y +I MDCQM +DG +AT+ IR LE T + IPI+A TA V
Sbjct: 703 --------HN--EYQMIFMDCQMPVLDGFEATKQIRALEEG--TSKHIPIVALTANVVLK 750
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
++ CF+ GMD FL KP + L + ++ K +K + D +
Sbjct: 751 DKHLCFDVGMDEFLPKPVNQGTLREVVASFLSDK-NKLTGDSE 792
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 32/164 (19%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D + +D KV SVLLV+D + RI L+ G T E A EA+ L+ +
Sbjct: 477 DESNIDFNKV----SVLLVDDSQLNMRITSTQLQSFGVSSTCC---ETATEALELVSESV 529
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK-ATRVIRRLEAEAETGQSIP- 169
N+ YDL+L+D M S+DG + A ++I R G++ P
Sbjct: 530 -----------------ENASPYDLVLIDKVMPSIDGFQLARKLIERF------GKACPK 566
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
++ +A +E G ++ +P Q++ L I E +AR
Sbjct: 567 LVMISADPRKQDEMHAKQVGFIAYIARPYQDNQLKWTISEVLAR 610
>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
Length = 648
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 69/141 (48%), Gaps = 23/141 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q + LKKLG +V+ G+AA++ L
Sbjct: 519 ILVVEDNPINQIVAKECLKKLGYQYAVVEHGQAALDY----------------------L 556
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
TH +P +LILMDCQM MDG AT IR EA E Q IPI+A TA V C
Sbjct: 557 NTHPTPQINLILMDCQMPIMDGFTATAKIRAGEA-TEFYQHIPILALTANVIESERERCL 615
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
GM+ FL KP +LA+ +
Sbjct: 616 QIGMNDFLAKPISLDILASLL 636
>gi|344341478|ref|ZP_08772397.1| PAS/PAC sensor hybrid histidine kinase [Thiocapsa marina 5811]
gi|343798598|gb|EGV16553.1| PAS/PAC sensor hybrid histidine kinase [Thiocapsa marina 5811]
Length = 780
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 25/142 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+ ED AV Q++ ML++ G + DG+AA+EA Q++
Sbjct: 635 VLVAEDNAVNQKVVTMMLRRFGIEPGIAPDGQAAIEAAA----------QVR-------- 676
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD QM + G +ATR IR E + G+ IPI+A TA V+ + +C
Sbjct: 677 -------FDLILMDIQMPKLSGHEATRHIRATERDRGDGEHIPIVAMTAGVSERDREDCS 729
Query: 187 NSGMDTFLNKPAQEHLLAAAIV 208
+GMD F++KPAQ L A ++
Sbjct: 730 AAGMDDFISKPAQIAELEAVLL 751
>gi|78484480|ref|YP_390405.1| response regulator receiver domain-containing protein
[Thiomicrospira crunogena XCL-2]
gi|78362766|gb|ABB40731.1| response regulator receiver domain protein (CheY-like)
[Thiomicrospira crunogena XCL-2]
Length = 132
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 28/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+E +LLVED V Q++ + +L+K+G + +G+ A
Sbjct: 1 MESFKILLVEDNLVNQKVALALLEKMGYQADVTANGQEA--------------------- 39
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
L+T YDLILMDCQM DG + TR IR L+ IPIIA TA A +
Sbjct: 40 ----LDTLAQTPYDLILMDCQMPVKDGYETTRAIRALDGPL---SDIPIIAMTANAMAGD 92
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+ +C+ +GM+ ++ KP L+A I
Sbjct: 93 DEKCYEAGMNDYMTKPINSKLMAEKI 118
>gi|392963233|ref|ZP_10328659.1| PAS sensor protein [Pelosinus fermentans DSM 17108]
gi|421056791|ref|ZP_15519708.1| PAS sensor protein [Pelosinus fermentans B4]
gi|421058418|ref|ZP_15521117.1| PAS sensor protein [Pelosinus fermentans B3]
gi|421067077|ref|ZP_15528593.1| PAS sensor protein [Pelosinus fermentans A12]
gi|421069388|ref|ZP_15530560.1| multi-sensor hybrid histidine kinase [Pelosinus fermentans A11]
gi|392437971|gb|EIW15833.1| PAS sensor protein [Pelosinus fermentans B4]
gi|392450408|gb|EIW27461.1| multi-sensor hybrid histidine kinase [Pelosinus fermentans A11]
gi|392450896|gb|EIW27900.1| PAS sensor protein [Pelosinus fermentans A12]
gi|392451057|gb|EIW28051.1| PAS sensor protein [Pelosinus fermentans DSM 17108]
gi|392460857|gb|EIW37111.1| PAS sensor protein [Pelosinus fermentans B3]
Length = 855
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 30/157 (19%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E + +E L VLLVED+ + Q++ ++ML G VTL +G+ A+E
Sbjct: 589 ELQRIEKLQVLLVEDEFINQKVAVKMLTNQGHNVTLASNGQQAIEFF------------- 635
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
N +D+I MD QM MDG + T IR LE + + IPI+A TA
Sbjct: 636 ------------NKEQFDIIFMDIQMPEMDGVQTTAAIRDLEEQWADERHIPIVAMTAYA 683
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+ + GMD +++KP L A ++ + RK
Sbjct: 684 MKGDRERLMSCGMDEYISKP-----LDAEVLNNVVRK 715
>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1147
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 29/138 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED AV Q++ ++ML+++G V++ +G+ A++ + +IQ
Sbjct: 897 LHILLAEDNAVNQKLAVKMLERMGHTVSVSANGQEALDCL-----------KIQK----- 940
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DL+LMD QM MDG +ATR++R E E + + +PI+A TA ++ +
Sbjct: 941 ---------FDLVLMDVQMPIMDGLEATRIVR--EHEKTSNEHVPIVAMTAYAMKGDKEK 989
Query: 185 CFNSGMDTFLNKP--AQE 200
C ++GMD +++KP AQE
Sbjct: 990 CLDAGMDGYISKPINAQE 1007
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
LE L VL+V+D A +RI L + T+V GEAA+ AM ++ H
Sbjct: 747 LENLPVLVVDDNATNRRILENTLLQWQTKPTIVDGGEAALHAM-------------KSAH 793
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
P + L++ DC M MDG + ++RR+ E + + II T+ +
Sbjct: 794 E------EGRP-FKLVITDCMMPEMDGFE---LVRRIN-EHPSWATPTIIMLTSAGERGD 842
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
C G+ +L KP ++ L I
Sbjct: 843 AARCMKLGISAYLLKPIKQSDLFFTI 868
>gi|406976746|gb|EKD99097.1| hypothetical protein ACD_23C00130G0002 [uncultured bacterium]
Length = 777
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 29/160 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +VLL ED V Q + + MLK G V++G AV +
Sbjct: 515 GGTVLLAEDNEVNQIVALAMLKNFGIEARAVENGRDAVALL------------------- 555
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNE 182
S +DL+LMDCQM MDG +AT IRR E + ++ PIIA TA VT D E
Sbjct: 556 ------RSRSFDLVLMDCQMPEMDGFQATMAIRRFEVTSNLRRT-PIIALTANAVTGDRE 608
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARK-SHKFSCD 221
+ C +SGMD +L KP LA + + R S F+ D
Sbjct: 609 K-CLSSGMDDYLAKPYTGEQLATMLSRWLPRTDSQLFAAD 647
>gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
Length = 774
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVED A+ QR+ ++L+KLG VT+ DG A++ Q++N
Sbjct: 506 LRVLLVEDNAINQRVAAKLLEKLGQDVTIACDGRQAIK-------------QVRN----- 547
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DL+LMD QM +DG ATR+IR+L A E + I+A TA + + ++
Sbjct: 548 -------AAFDLVLMDVQMPDLDGIAATRLIRKLGAPFE---RLAIVAMTANASDQDRQD 597
Query: 185 CFNSGMDTFLNKPAQEHLLAA 205
C ++GM+ F +KP AA
Sbjct: 598 CLDAGMNGFESKPVTFQRFAA 618
>gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
Length = 864
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 24/138 (17%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VL+VED A+ Q++ +LKK G V + +G+ A++ +
Sbjct: 743 TVLVVEDNAINQKVASLLLKKAGFSVEIANNGQEALDMVM-------------------- 782
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+ SP Y L+LMDC M MDG AT IR+ E E + + +PIIA TA V ++ +C
Sbjct: 783 --SKTSP-YSLVLMDCMMPIMDGFAATEAIRKWE-ENQEKKRLPIIALTASVFVEDIDKC 838
Query: 186 FNSGMDTFLNKPAQEHLL 203
+ SGMD ++ KP ++ L+
Sbjct: 839 YQSGMDDYVAKPFRKELI 856
>gi|387813954|ref|YP_005429437.1| sensor histidine kinase/response regulator hybrid [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338967|emb|CCG95014.1| putative sensor histidine kinase/response regulator hybrid
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 782
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ L++LLVED V Q + +LKKLG V ++G A+EA+ QN
Sbjct: 652 IPALNILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRALEAL-------------QN-- 696
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YDL+LMDCQM MDG +ATR IR + Q++P+IA TA V +
Sbjct: 697 ----------KTYDLVLMDCQMPVMDGYEATRAIR----QNPQWQTLPVIAVTANVMQGD 742
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+C SGM+ ++ KP L A I
Sbjct: 743 REDCLASGMNDYITKPYNRDELRAVI 768
>gi|410622728|ref|ZP_11333554.1| autoinducer 2 sensor kinase/phosphatase luxQ [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410157716|dbj|GAC28928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 725
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
+E S + P N T + E L+ ED + Q + +L +L TL DGE
Sbjct: 569 SESSLTDAPANKGDTDNIPGHIFESCHALVAEDNDINQLVIQNLLAQLNITCTLANDGEE 628
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
A+ + L+ + Y+ ILMDCQM +DG + TR+IR+ +
Sbjct: 629 AL----------------------AQLDGEAAGFYNFILMDCQMPKLDGFETTRLIRQ-D 665
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ + ++IPIIA TA A ++ +CF +GM+ +L+KP + +L+ I+E +
Sbjct: 666 DKYQQVKNIPIIALTANAMASDKEKCFEAGMNGYLSKPVTKSILSDKIIELL 717
>gi|339483656|ref|YP_004695442.1| integral membrane sensor hybrid histidine kinase [Nitrosomonas sp.
Is79A3]
gi|338805801|gb|AEJ02043.1| integral membrane sensor hybrid histidine kinase [Nitrosomonas sp.
Is79A3]
Length = 600
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 67/131 (51%), Gaps = 26/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q + ML++L VT+V +G A+ A T
Sbjct: 477 ILVVEDNEVNQLVSKAMLERLNCEVTMVNNGLEAINAYT--------------------- 515
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S H+DLILMDC M MDG +ATR IR LE + E PIIA TA +ECF
Sbjct: 516 ----SQHFDLILMDCNMPVMDGFEATRRIRDLERQ-ENAVPTPIIALTAHAFDHVRQECF 570
Query: 187 NSGMDTFLNKP 197
++GMD L+KP
Sbjct: 571 DAGMDEHLSKP 581
>gi|442609645|ref|ZP_21024381.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748889|emb|CCQ10443.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1387
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 22/147 (14%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + +R+L +LG VT+ ++G VEA+ ++ +A
Sbjct: 1262 VLLVEDNKVNQIVALRILNELGVVVTVAENG---VEALQILNDA---------------- 1302
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +++ILMDCQM MDG +AT IR A E ++IP+IA TA ++++C
Sbjct: 1303 --RDERRFNVILMDCQMPLMDGYEATYKIRDGHAGHEY-KTIPVIAMTANAMQGDKQKCL 1359
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
++GMD +++KP LL + I+R
Sbjct: 1360 DAGMDDYISKPIDTSLLKEKLRSWISR 1386
>gi|451971858|ref|ZP_21925073.1| hypothetical protein C408_1685 [Vibrio alginolyticus E0666]
gi|451932216|gb|EMD79895.1| hypothetical protein C408_1685 [Vibrio alginolyticus E0666]
Length = 533
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G + +GE AV+ QN
Sbjct: 252 ILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQ------------QN------- 292
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT++IR++EA+ + IPIIA TA V D+ ++CF
Sbjct: 293 ------QYSLILMDCMMPVMDGFEATKMIRQIEAKEKRTIRIPIIALTASVVDDDIQKCF 346
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
+ GMD ++ KP + LL + + I + DE+
Sbjct: 347 DVGMDDYVPKPFKAGLLKEKLDKAIGLRISNIVSDEK 383
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 414 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVE----MFQKDG-------------- 455
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +A+R IR EA ++ PIIA TA V D+ + CF
Sbjct: 456 ------GFDIILMDCMMPIMDGFEASRQIRAYEASKGLPKT-PIIALTASVVDDDIQRCF 508
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD ++ KP + L I
Sbjct: 509 DSGMDAYVPKPVRREKLLYQI 529
>gi|427711822|ref|YP_007060446.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427375951|gb|AFY59903.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 896
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 27/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED Q++ +R L LG +V +G AV A
Sbjct: 763 LRILVAEDNITNQKVALRQLNNLGYHADVVSNGLEAVLAW-------------------- 802
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ YDLI MDCQM MDG +ATR IR E +T +PIIA TA ++ +
Sbjct: 803 -----ETVGYDLIFMDCQMPEMDGFEATRQIR--AKEQQTATHVPIIALTANAMPEDRQR 855
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C+ +GMD +L+KP ++ LAA +
Sbjct: 856 CYGAGMDDYLSKPVRKQDLAAKL 878
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 27/158 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VLLV+D I L+ G V +AA+E +T H +
Sbjct: 617 LVGKRVLLVDDNQTNLEISRYHLRHWGLEVLTAMSAQAALEVLT---------H-----N 662
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H S L D+ L+D QM +DG R IR+L Q+IP++ T+L D
Sbjct: 663 HASGLGV------DIALLDMQMPDVDGLTLGRQIRQLAWT----QTIPLVMLTSLGQTDP 712
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
+C + D +L KP + L ++ + + S
Sbjct: 713 --QC-RAEFDAYLVKPVRPSRLFNTLIALLTPPAATLS 747
>gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 709
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + Q IG +L+++G V + DG VEAM L+
Sbjct: 356 VLLVEDNVINQEIGKALLRQVGLEVAVAADG---VEAMELLARQP--------------- 397
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMD QM MDG +ATR+IRR + A +PI+A TA T+ +C
Sbjct: 398 -------FDLVLMDLQMPGMDGYEATRMIRRQPSLA----GLPIVAMTAYATSGVREQCL 446
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L KP + L + IA +S
Sbjct: 447 AAGMDDYLGKPIEVDQLHRVLTRWIAPRS 475
>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 921
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 66/141 (46%), Gaps = 29/141 (20%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
DE + G VLL ED V Q++G+ ML KLG V + DGE AV+
Sbjct: 653 DEWRPTRGGRVLLAEDNPVNQQVGLAMLAKLGIAVRVANDGEEAVKLAA----------- 701
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ +DLILMDC M +DG +A+ IR +E +PI+A TA
Sbjct: 702 --------------TEAFDLILMDCHMPVLDGYEASAAIR----ASEHAPRVPIVALTAN 743
Query: 177 VTADNERECFNSGMDTFLNKP 197
V N C +GMD FL KP
Sbjct: 744 VMEGNRERCLAAGMDDFLAKP 764
>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
Length = 1363
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/131 (38%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED V +R+ L+KLG V V +G AVE M
Sbjct: 1234 ILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMA--------------------- 1272
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y L+LMDCQM MDG +ATR IRRL E ++G+ PIIA TA + C
Sbjct: 1273 --RRGQEYCLVLMDCQMPEMDGYEATRQIRRL--ETKSGRRTPIIALTANALEGDREACL 1328
Query: 187 NSGMDTFLNKP 197
+GMD +L+KP
Sbjct: 1329 AAGMDDYLSKP 1339
>gi|378729812|gb|EHY56271.1| osomolarity two-component system, sensor histidine kinase SLN1
[Exophiala dermatitidis NIH/UT8656]
Length = 1163
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED + Q + +RML+ VT+ KDG+ A E + +++H G
Sbjct: 991 IRVLVAEDNKINQEVVLRMLRLEDVYDVTIAKDGQEAFEKVR------------ESMHSG 1038
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DL+ MD QM ++DG ++TR+IR E G S PI+A TA NE
Sbjct: 1039 E--------RFDLVFMDVQMPNLDGIQSTRLIR------EMGFSAPIVALTAFAEKSNED 1084
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL KP + L
Sbjct: 1085 ECMASGMDYFLAKPIRRPAL 1104
>gi|242786807|ref|XP_002480878.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces stipitatus ATCC 10500]
gi|218721025|gb|EED20444.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces stipitatus ATCC 10500]
Length = 1309
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + L +LL ED V Q++ +++L+K
Sbjct: 1090 QPIDLGNGMLPALEGRST--PITTDHS--------RSLDILLAEDNEVNQKLAVKILEKC 1139
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G+ A++A+ KN + YD+ILMD QM M
Sbjct: 1140 NHGVTVVGNGQEALDAV--------KNRR-----------------YDIILMDVQMPVMG 1174
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E E ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1175 GFEATDKIREYERENNLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMIQTI 1233
Query: 208 VE 209
++
Sbjct: 1234 LK 1235
>gi|242786803|ref|XP_002480877.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces stipitatus ATCC 10500]
gi|218721024|gb|EED20443.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces stipitatus ATCC 10500]
Length = 1310
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + L +LL ED V Q++ +++L+K
Sbjct: 1090 QPIDLGNGMLPALEGRST--PITTDHS--------RSLDILLAEDNEVNQKLAVKILEKC 1139
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G+ A++A+ KN + YD+ILMD QM M
Sbjct: 1140 NHGVTVVGNGQEALDAV--------KNRR-----------------YDIILMDVQMPVMG 1174
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E E ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1175 GFEATDKIREYERENNLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMIQTI 1233
Query: 208 VE 209
++
Sbjct: 1234 LK 1235
>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
Length = 715
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 27/167 (16%)
Query: 31 PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAG 90
PV + + A GS+ V ++ +DE + L+ L +LL ED V Q++ + +LKK G
Sbjct: 418 PVKQSELFDAIGSALGLQVAEEEAPLDEVQQLKALRILLAEDSIVNQKLALALLKKHGHD 477
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
V + +G+ AV + +DL+LMD QM MDG +
Sbjct: 478 VVVANNGKEAVAVF-------------------------DRDRFDLVLMDVQMPEMDGLE 512
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
AT +R EA + + +PIIA TA + +C +GMD +++KP
Sbjct: 513 ATAAVR--AKEANSDRHVPIIALTAHAMKGDREQCLEAGMDGYVSKP 557
>gi|344344647|ref|ZP_08775508.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
gi|343803811|gb|EGV21716.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
Length = 971
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 69/142 (48%), Gaps = 27/142 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+LLVED Q + +L +LG V L +DG A+ A+
Sbjct: 721 ILLVEDNPTNQVVARGLLARLGHPEVDLARDGHDALAALA-------------------- 760
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
HYDL++MDCQM MDG + R IR EA AET Q IPI+A TAL ++ C
Sbjct: 761 -----RAHYDLVIMDCQMPEMDGFETARRIRDGEAGAETAQ-IPIVAMTALAQEGDQARC 814
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
+GM+ L KP Q LAA +
Sbjct: 815 LAAGMNAHLPKPIQPQTLAAVL 836
>gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
SZ]
gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
SZ]
Length = 641
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 31/168 (18%)
Query: 44 SSSCPVN----DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
S S PV D ++G + + + +LL ED + + + R+L+K G V +V DG+A
Sbjct: 496 SVSVPVEIAGPDTLSGSADLQGVPAQRILLAEDNEINRMMLARLLEKTGHSVDVVPDGKA 555
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
AV Q +GS Y +ILMD QM MDG +ATR+IR L
Sbjct: 556 AV----------------QCWKNGS---------YSMILMDIQMPEMDGLEATRIIRSL- 589
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
EA G IPIIA T + ++ C+ +GMD L KP Q L AA+
Sbjct: 590 -EAGQGGHIPIIAMTGQDSPEDVENCYRAGMDLHLKKPVQLCELVAAV 636
>gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
Length = 1374
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 29/169 (17%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
P+P+ I PQ E + V E +L+GLSVLLVED A Q + +L G
Sbjct: 1005 PIPLLQAIAPQGETPPAPDAGAAAVDSAGE--MLKGLSVLLVEDNAFNQEVARELLIGEG 1062
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
A VT+ GEA V +T Q H +D++LMD QM +DG
Sbjct: 1063 ASVTIASGGEAGVRCVT------------QGEH-----------RFDVVLMDLQMPDIDG 1099
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ATR IR G+++PIIA TA V+ +++ C +GM+ L KP
Sbjct: 1100 FEATRRIR----AHPDGRTLPIIAMTANVSQADKQACQAAGMNGHLGKP 1144
>gi|384485405|gb|EIE77585.1| hypothetical protein RO3G_02289 [Rhizopus delemar RA 99-880]
Length = 2007
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 25/143 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ +R+L+K G V +V +G+ AVEA
Sbjct: 1865 LDILLAEDNIVNQKLAVRILEKFGHKVEIVSNGKMAVEA--------------------- 1903
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
E N YD+ILMD QM M G +AT+ IR +E + +PIIA TA + +
Sbjct: 1904 -FENRN---YDMILMDVQMPIMGGFEATQKIREIENISGCHTRVPIIALTAHAMIGDREK 1959
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C SGMD ++ KP + L AAI
Sbjct: 1960 CLQSGMDEYVTKPLRFPELIAAI 1982
>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 1149
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED Q++ +L K+G V + +G A+E +
Sbjct: 894 ILLVEDLLPNQKVASSVLSKMGCTVEIADNGRIALERLA--------------------- 932
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D++LMDCQM MDG +ATR IR + E +TG PIIA TA A + ++C
Sbjct: 933 ----EDSFDIVLMDCQMPEMDGLEATRAIR--QRERDTGTHTPIIAMTANNMASDRKQCL 986
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD F++KP + LA + + + KS
Sbjct: 987 EAGMDDFISKPFEREQLAKLLGKWLNPKS 1015
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L L+++D + QRI L+ G + V G+ EA+TL
Sbjct: 734 LSRLKCLILDDNLLNQRIFRDQLRSCGMQIHTVTTGD---EALTL--------------- 775
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ + + N P +D+ L+D + ++G + +R++ A ET P+I T+ +
Sbjct: 776 -ATEMASANKP-FDIFLLDFNLPGINGEQIALRLRQMPAYKET----PMILLTSSGNRGD 829
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+ G D +L KP +L AI
Sbjct: 830 AKHFEEVGFDAYLIKPVPHQILHEAI 855
>gi|333909040|ref|YP_004482626.1| integral membrane sensor hybrid histidine kinase [Marinomonas
posidonica IVIA-Po-181]
gi|333479046|gb|AEF55707.1| integral membrane sensor hybrid histidine kinase [Marinomonas
posidonica IVIA-Po-181]
Length = 601
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 25/135 (18%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ L +LLVED V Q + + L KLG V L ++G A E + Q+
Sbjct: 473 QSLRILLVEDNKVNQIVCEQFLLKLGCRVDLAENGLIAKERF--------RQAQV----- 519
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YD+I MDC M MDG ATR IR++EA+ + ++ PI+A TA V D +
Sbjct: 520 -----------YDVIFMDCNMPEMDGFLATRAIRQIEADQQLAET-PIVALTAHVEEDIK 567
Query: 183 RECFNSGMDTFLNKP 197
R+C SGM+ FL+KP
Sbjct: 568 RKCLQSGMNAFLSKP 582
>gi|224368479|ref|YP_002602642.1| two-component hybrid sensor protein [Desulfobacterium autotrophicum
HRM2]
gi|223691195|gb|ACN14478.1| two-component hybrid sensor protein [Desulfobacterium autotrophicum
HRM2]
Length = 157
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 26/150 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +L+ ED V Q++ ML + G T+ +G IQ L
Sbjct: 29 IKILVAEDNLVNQKVFQMMLNRHGFSATIADNG----------------TQLIQRLKQAP 72
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDLILMD QM MDG +ATR+IR E+E Q + IIA TA T ++E+
Sbjct: 73 ---------YDLILMDIQMPEMDGIQATRIIRNAESETRCKQ-VAIIAMTAHATHEDEQR 122
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
C N+GMD +L KP + L A I + + K
Sbjct: 123 CLNAGMDAYLAKPVTDKELIAMIRKVLENK 152
>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
Length = 873
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 29/153 (18%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
G VLLVED+ + Q + +L+++G V L DG AV+ + ++N
Sbjct: 750 RGRRVLLVEDEPINQEVAGELLREVGLEVELAADGLQAVQLV------------VEN--- 794
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YD+ILMD QM MDG +ATR IR+L Q++PI+A TA A++
Sbjct: 795 ----------DYDVILMDMQMPEMDGLEATRAIRKLPGR----QTVPILAMTANAFAEDR 840
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C SGM+ F+ KP +L A ++ + +S
Sbjct: 841 ERCMASGMNDFIPKPVNPDVLYATLLRWLTVRS 873
>gi|288940176|ref|YP_003442416.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Allochromatium
vinosum DSM 180]
gi|288895548|gb|ADC61384.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Allochromatium vinosum DSM 180]
Length = 1380
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 33/183 (18%)
Query: 31 PVTNNIIPQAEGSSSSCPVN------DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
PVT ++ A S + PV +D V + GL VL+ +D A+ Q ML
Sbjct: 351 PVTPGVVLAALNGSGAEPVRAESWIAEDEPPVATPRAGLGLRVLVADDNAINQDTVTAML 410
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
+ LG +V DG+AA+EA++ +DL+LMDC+M
Sbjct: 411 RSLGCESRIVFDGQAAIEALS-------------------------RESFDLVLMDCKMP 445
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
MDG +A R IR E E+ T +PIIA TA ++ C +GMD +L KP L
Sbjct: 446 LMDGYEAARRIRLQEGESRT--RLPIIALTAHALEGDQERCRAAGMDDYLTKPLSRRALR 503
Query: 205 AAI 207
A +
Sbjct: 504 AML 506
>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
Length = 641
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+KLG V + + G+ A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDALR----------------------QC 548
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+TH +DLILMDCQM MDG AT IR++ E GQ +PIIA +A V + ++ CF
Sbjct: 549 QTH---QFDLILMDCQMPVMDGFIATENIRKM---GEWGQQVPIIALSANVIKEAQQRCF 602
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ F+ KP + L
Sbjct: 603 DAGMNEFVAKPVTKERL 619
>gi|409204071|ref|ZP_11232270.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1118
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 24/144 (16%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
S+LLVED + Q + I ML++LGA V ++GE A+ ++
Sbjct: 982 SILLVEDNRINQTVAITMLERLGAKVVCQENGELAL----------------------AH 1019
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
L++ N P YD+ILMDCQM MDG +AT+ IR+ A + Q+ I+A TA + +C
Sbjct: 1020 LQSINKP-YDVILMDCQMPVMDGYQATQQIRQGVA-GKNHQNSVIVALTANAMQGDREKC 1077
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVE 209
N+GMD +L KP L A +++
Sbjct: 1078 LNAGMDDYLTKPIDFDELKAKLLQ 1101
>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
Length = 1238
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 30/139 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED AV Q+I + ML+ G V + ++G A+E +
Sbjct: 957 VLLVEDNAVNQQITLAMLEDTGYAVAVAENGRQALERLA--------------------- 995
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTA-LVTADNERE 184
+ +D++LMDCQM MDG +AT ++RR EAETG +P+IA TA ++ D ER
Sbjct: 996 ----NERFDVVLMDCQMPLMDGFEATELLRR--REAETGAPRLPVIALTANAISGDRER- 1048
Query: 185 CFNSGMDTFLNKPAQEHLL 203
C +GMD +L+KP + +L
Sbjct: 1049 CVAAGMDDYLSKPFRRDVL 1067
>gi|288574524|ref|ZP_06392881.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570265|gb|EFC91822.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 615
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 1 MSIGKEQAETTSHPEKLELEHGLQLEF---KPVPV-TNNIIPQAEGSSSSCPVNDDVTGV 56
+SI K+ E L+ E G F P+PV TN P A G S V
Sbjct: 429 LSIAKQIVEIMGGRLWLKSEEGKGSTFFVDVPLPVLTNEFHPPAVGGGS-------VVTS 481
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D+ + L+VLLVED + +++ M+ +L + + +DG AVEA++
Sbjct: 482 DDMETPRDLTVLLVEDNMLNRKLAEAMMAELDWTIDVAEDGFKAVEAVS----------- 530
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ YDL+LMD QM MDG +ATR IR +E IIA TA
Sbjct: 531 --------------AKRYDLVLMDVQMPGMDGLEATRKIRFMEKRGVISYRPIIIAMTAN 576
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ C SGMD +L+KP L+ I +
Sbjct: 577 AMKGDREICMESGMDDYLSKPLSRDLMMKTITSAL 611
>gi|417952117|ref|ZP_12595180.1| putative sensor protein [Vibrio splendidus ATCC 33789]
gi|342802523|gb|EGU37936.1| putative sensor protein [Vibrio splendidus ATCC 33789]
Length = 871
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L++ G + +G+ AV+ +T
Sbjct: 750 ILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVIT--------------------- 788
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D +LMDC M MDG ATR IR+ E+E +T +PIIA TA V ++ ++CF
Sbjct: 789 ---QGAQFDAVLMDCMMPVMDGITATRAIRQWESEQQTT-PLPIIALTASVLEEDIKDCF 844
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ +L KP + H L
Sbjct: 845 DAGMNAYLPKPYKSHQL 861
>gi|451948337|ref|YP_007468932.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451907685|gb|AGF79279.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 751
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 28/155 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L G+ V L ED+ + QR+ L++ G VT+ ++G+ ++ M KNH
Sbjct: 624 KKLLGIRVFLAEDEFINQRLISAYLEEQGCDVTVCENGQELIDLME-------KNHA--- 673
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVT 178
D+ILMD QM ++G AT +IR+ E ETG+ S+PIIA TA T
Sbjct: 674 ---------------DIILMDIQMPVLNGLDATEIIRK--KEKETGKFSVPIIALTAQAT 716
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
D E++C +GMD +L KP L A I + +AR
Sbjct: 717 TDFEQKCKLAGMDGYLTKPIPFKQLIAIIDKLVAR 751
>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 748
Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 43/189 (22%)
Query: 28 KPVPVTNNI--------IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79
KPV +T+ + +PQ E S VT ++VL L +L+ ED V Q++
Sbjct: 585 KPVKLTDFLKALQVTLGLPQEEEVQPSL-----VTQYTVREVLPRLHILVAEDNPVNQKL 639
Query: 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139
IR+L+K G + K+G +E + KN HYDLILM
Sbjct: 640 AIRLLEKNGYYADIAKNGLEVLEKLK-------KN------------------HYDLILM 674
Query: 140 DCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPA 198
D QM MDG +AT+ IR L E G+S IPIIA TA + C N+ MD +++KP
Sbjct: 675 DVQMPEMDGLQATQKIREL----ENGKSHIPIIALTAHAMKKDIDMCLNAAMDGYVSKPI 730
Query: 199 QEHLLAAAI 207
++ L I
Sbjct: 731 RKEELFKEI 739
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 28/141 (19%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+K L+GL+VLL++D + + ++L+K VT E+A +A+ ++ K +Q
Sbjct: 476 QKNLKGLNVLLIDDNPINRSYFQKILEKNKLQVT---TAESAFKALEIL-----KTNQ-- 525
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+DLI+ D QM MDG + + IR L + + +PII T+
Sbjct: 526 --------------RFDLIITDAQMPEMDGFELSTQIRAL----KNYKKVPIILLTSSGM 567
Query: 179 ADNERECFNSGMDTFLNKPAQ 199
+ C G++ +L KP +
Sbjct: 568 RGDSERCKQIGINAYLPKPVK 588
>gi|386829259|ref|ZP_10116366.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386430143|gb|EIJ43971.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 977
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED + Q + ML +L VT+V +GE A++A+T
Sbjct: 697 ILLAEDNLINQEVMKDMLLQLNCQVTVVNNGEEALQALT--------------------- 735
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADNEREC 185
YDLI MDCQM MDG +AT IRR E + + +PIIA TA C
Sbjct: 736 ----QHRYDLIFMDCQMPKMDGYQATEQIRRQEKQHKNNMIHVPIIAVTANAINGARERC 791
Query: 186 FNSGMDTFLNKPAQEH 201
F +GMD +L+KP H
Sbjct: 792 FMAGMDDYLSKPINSH 807
>gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea blandensis MED297]
gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297]
Length = 767
Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 70/142 (49%), Gaps = 28/142 (19%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E + LS+L+ ED V Q++ +L KLG VT+V +G
Sbjct: 637 ETALSRSLSILVAEDNVVNQKVIEGLLVKLGHSVTVVPEG-------------------- 676
Query: 118 QNLHHGSNLETHNSPH--YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
G ++ +P YDLILMDC+M MDG +AT++IR+ E +A IPI+A TA
Sbjct: 677 -----GQSVSERMNPEASYDLILMDCEMPKMDGYEATKLIRQYE-KANALPQIPIVALTA 730
Query: 176 LVTADNERECFNSGMDTFLNKP 197
D R C GM+ FL KP
Sbjct: 731 HALDDVRRRCLKCGMNDFLTKP 752
>gi|239908139|ref|YP_002954880.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798005|dbj|BAH76994.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 807
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 29/152 (19%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
+ L G VLLVED A+ Q++ L+ LGA V + +G AVE +
Sbjct: 308 RPLSGTLVLLVEDNAINQQVARETLESLGAAVDVAINGREAVEMV--------------- 352
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
S YD++LMD QM MDG ATR IR+L AE +PI+A TA A
Sbjct: 353 ----------RSSLYDVVLMDVQMPVMDGLAATRAIRQLPGTAE----LPIVALTAHALA 398
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
++ C +GM+ +L KP + L A++ + I
Sbjct: 399 EDRERCLEAGMNDYLTKPLEVDRLLASLGQWI 430
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEA---ETGQSIPIIAFTALVTADNERECFNSGM 190
+DLILMD +M MDG A R IRRL A + +PI+A T+ D C +GM
Sbjct: 634 FDLILMDIEMPEMDGPTAARTIRRLLAASVAPPCAPGVPIVALTSHDCKDEAARCLEAGM 693
Query: 191 DTFLNK 196
D L+K
Sbjct: 694 DACLHK 699
>gi|171915289|ref|ZP_02930759.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM
4136]
Length = 765
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 27/157 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED Q + ML++ G V + +G AVE + ++A
Sbjct: 632 VLVVEDNETGQTVASLMLQQFGLEVEIAANGAEAVERVRSAVSA---------------- 675
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
YD+ILMDCQM M+G +ATRVIR E ETGQ +PIIA +A V D+ C
Sbjct: 676 -------YDMILMDCQMPVMNGFEATRVIRL--HEGETGQGRMPIIALSANVQPDDIAAC 726
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARK-SHKFSCD 221
+ GMD FL+KP ++ L + + K + + +C+
Sbjct: 727 LDCGMDDFLSKPLRKEALHNKLAAYLPHKGTSRVACE 763
>gi|384499129|gb|EIE89620.1| hypothetical protein RO3G_14331 [Rhizopus delemar RA 99-880]
Length = 1833
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 32/158 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ +R+L+K G V +V +G AVEA
Sbjct: 1690 LEILLAEDNIVNQKLALRILEKFGHNVEIVSNGRLAVEAF-------------------- 1729
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S +DLILMD QM M G +AT+ IR +E + +PIIA TA + +
Sbjct: 1730 -----ESRSFDLILMDVQMPVMGGFEATQKIREIEHLSGGNSHVPIIALTAHAMIGDREK 1784
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI-------VETIARKS 215
C SGMD ++ KP + L AI V+TI KS
Sbjct: 1785 CLQSGMDEYVTKPLRFPELIGAIKKFAPQSVKTIITKS 1822
>gi|406865413|gb|EKD18455.1| hsp90-like protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1646
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 23/192 (11%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P++ + P D++ + KV +LLVED A+ Q+I ++ ++KLG V+ V +G
Sbjct: 1265 PRSVSMTPPTPSELDLSPEERAKV----KILLVEDNAINQQIALKTIRKLGFAVSAVWNG 1320
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
+ A++ + A+ H Q P D+ILMD QM +DG +AT ++R
Sbjct: 1321 KEALD----YVLASDSRHPPQ-------------PKPDIILMDVQMPIIDGYRATHLLRH 1363
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE-TIARK-S 215
+ ++IPI+A TA + +C +GMD +L KP + L +V I+R+ S
Sbjct: 1364 HKPYNHLARNIPIVAMTASAIQGDREKCKKAGMDDYLAKPVKGKTLEKMLVRWAISRRVS 1423
Query: 216 HKFSCDEQAEAQ 227
D ++A+
Sbjct: 1424 QSAGGDTSSDAE 1435
>gi|315127117|ref|YP_004069120.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas sp. SM9913]
gi|315015631|gb|ADT68969.1| putative signal transduction histidine kinase two-component system
with Protein-glutamate methylesterase domain
[Pseudoalteromonas sp. SM9913]
Length = 918
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 27/131 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED A+ +++ +ML+ A +T+ +DG A+E +
Sbjct: 800 ILLVEDNAINRQVIAKMLEPTKASLTMAEDGLKALEVL---------------------- 837
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S +DLILMDCQM +MDG + TR IR E +TG +PI+A TA ++++ C
Sbjct: 838 ---KSQSFDLILMDCQMPNMDGYECTRAIR--TTEIKTGLRVPIVAITANAYEEDKQRCL 892
Query: 187 NSGMDTFLNKP 197
GMD F+ KP
Sbjct: 893 IVGMDDFIAKP 903
>gi|350552380|ref|ZP_08921582.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794322|gb|EGZ48139.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 2334
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 39/176 (22%)
Query: 27 FKPVPVTNNIIPQA-----EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGI 81
F PVT + +A +G + S + ++ V L GL +LLVED + Q + +
Sbjct: 1951 FLSKPVTATTLFEALQRAEKGDTQSATKHRQISKV---PALTGLQILLVEDNEINQEVAL 2007
Query: 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141
RML+K GA V +V+DG AV L+T H+DLILMD
Sbjct: 2008 RMLEKTGAEVFIVEDGAQAVAVA---------------------LQT----HFDLILMDL 2042
Query: 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
QM MDG +ATR IR GQ +PIIA +A V ++++ +G D + KP
Sbjct: 2043 QMPVMDGFEATRQIR------AQGQRMPIIALSAAVMQEDKQRAAAAGADDHIAKP 2092
>gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1480
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 25/151 (16%)
Query: 49 VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
V++D TG E + +LLVED V Q + +L+ V + +G V+A+ +++
Sbjct: 1086 VHNDDTGPQEFS--SKVRILLVEDNYVNQLVATGVLEDFKVSVDVADNG---VQAIHMLL 1140
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
NA P Y L+LMDCQM MDG +A+R IRR EA + + I
Sbjct: 1141 NA-------------------EDPPYSLVLMDCQMPEMDGYEASRAIRRGEA-GDRYKQI 1180
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQ 199
PIIA TA ++ +C +SGMD +L KP +
Sbjct: 1181 PIIAMTANAMMGDKEKCLDSGMDDYLAKPIE 1211
>gi|350553936|ref|ZP_08923087.1| response regulator receiver and Hpt phospho transfer protein
[Thiorhodospira sibirica ATCC 700588]
gi|349789372|gb|EGZ43330.1| response regulator receiver and Hpt phospho transfer protein
[Thiorhodospira sibirica ATCC 700588]
Length = 285
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 28/157 (17%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
++ G VL+VED A+ QR+ I +LK++ T+ +G A+E +
Sbjct: 21 RQHFSGRRVLVVEDNALNQRVTIDILKRVNLHSTIAPNGAVAIETL-------------- 66
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
N HY+LILMD QM MDG +ATR+IR + + +PI+A TA
Sbjct: 67 ----------QNDAHYELILMDVQMPVMDGLQATRIIRTM----PQVKHLPILAMTAHDQ 112
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ C +GM +L+KP LL I+ + +KS
Sbjct: 113 IHDVSTCLGAGMSDYLSKPILPELLLEKILYWLRQKS 149
>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
Length = 1055
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G + +GE AV+ QN
Sbjct: 774 ILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQ------------QN------- 814
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT++IR++EA+ + IPIIA TA V D+ ++CF
Sbjct: 815 ------QYCLILMDCMMPVMDGFEATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCF 868
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
+ GMD ++ KP + LL + + I + DE+
Sbjct: 869 DVGMDDYVPKPFKAGLLKEKLDKAIGLRISNIVSDEK 905
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 936 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVE----MFQKDGG------------- 978
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +A+R IR EA ++ PIIA TA V D+ + CF
Sbjct: 979 -------FDIILMDCMMPIMDGFEASRQIRAYEASKGLPKT-PIIALTASVVDDDIQRCF 1030
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD ++ KP + L I
Sbjct: 1031 DSGMDAYVPKPVRREKLLYQI 1051
>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
bacterium DG1235]
gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
bacterium DG1235]
Length = 1320
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 28/149 (18%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ L +L+VED V Q++ +LK+LG + L +G VE++T
Sbjct: 1195 KSLRILVVEDNPVNQKVARLLLKRLGFQIDLAGNGIEGVESVT----------------- 1237
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
HYD++LMD QM MDG +ATR IR+L GQ I A +A V+ ++
Sbjct: 1238 --------RQHYDIVLMDVQMPEMDGLEATRQIRKL--HLPDGQP-AIFAMSAGVSEYDK 1286
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ECF++GM+ F+ KP + L A+ E I
Sbjct: 1287 KECFDAGMNGFIPKPVKVETLKLALEEAI 1315
>gi|194334444|ref|YP_002016304.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
gi|194312262|gb|ACF46657.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
Length = 676
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 35/165 (21%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
Q +G SS V+D ++ +LLVED + Q++ M++K+G + + +GE
Sbjct: 529 QKDGFRSSRSVDD---------IIRPHRILLVEDNVINQKVAQAMIEKIGYEIDIAVNGE 579
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
AVEA+ Y L+LMD QM MDG +ATR IR+
Sbjct: 580 EAVEAL-------------------------QQKQYGLVLMDLQMPVMDGFEATRRIRKF 614
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
A + +P++A TA T ++ C +GMD +L+KP + +L
Sbjct: 615 GGLASNAR-VPVVAMTANATREDRELCLRAGMDDYLSKPVERQVL 658
>gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 729
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 30/171 (17%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
+ + E + PV+++ G ++ G VLLVED+ + Q I MLK +G V D
Sbjct: 579 LTKGESAEPEAPVSEN-AGTRLRRDQAGRRVLLVEDEPINQEIAREMLKDVGLCVDTADD 637
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G AV +A ++ Y LILMD QM +MDG +ATR IR
Sbjct: 638 GREAVRL------SAERD-------------------YALILMDMQMPNMDGLEATRCIR 672
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ G IPI+A TA V A++ C +GMD FL KP L +
Sbjct: 673 ----QTPRGARIPIVAMTANVFAEDREHCLEAGMDDFLAKPVMPETLYGVV 719
>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
Length = 1059
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 25/157 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G + +GE AV+ QN
Sbjct: 778 ILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQ------------QN------- 818
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT++IR++EA+ + IPIIA TA V D+ ++CF
Sbjct: 819 ------QYCLILMDCMMPVMDGFEATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCF 872
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
+ GMD ++ KP + LL + + I + DE+
Sbjct: 873 DVGMDDYVPKPFKAGLLKEKLDKAIGLRISNIVSDEK 909
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 940 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVE----MFQKDGG------------- 982
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +A+R IR EA ++ PIIA TA V D+ + CF
Sbjct: 983 -------FDIILMDCMMPIMDGFEASRQIRAYEASKGLPKT-PIIALTASVVDDDIQRCF 1034
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD ++ KP + L I
Sbjct: 1035 DSGMDAYVPKPVRREKLLYQI 1055
>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 992
Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 28/145 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED V Q++ + +L+KLG V + DG AVEA+
Sbjct: 744 LRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAV-------------------- 783
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YDL+LMD QM MDG +AT IR L AE +PI+A TA ++R
Sbjct: 784 -----RSRPYDLVLMDVQMPEMDGLQATAAIRALTGGAE---RVPIVAMTANAMRGDDRM 835
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
C ++GMD +++KP L + +
Sbjct: 836 CLDAGMDRYISKPIDRRKLMEVLAQ 860
>gi|347828624|emb|CCD44321.1| histidine kinase-group VI protein [Botryotinia fuckeliana]
Length = 1219
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 36/171 (21%)
Query: 43 SSSSCPVNDD-----VTGVD----EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVT 92
SS + P NDD + +D EK + + VL+ ED V Q + +RMLK V
Sbjct: 1006 SSPTPPPNDDNAKTQLAAIDRAAKEKVGDKKIRVLVAEDNLVNQEVVLRMLKLEDVYDVV 1065
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+ KDG+ A + + Q++ G ++LI MD QM ++DG ++T
Sbjct: 1066 VAKDGQEAYDIVK------------QSMEEGK--------FFNLIFMDIQMPNLDGLQST 1105
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
R+IR E G S PI+A TA N +EC+ SGMD FL+KP + L
Sbjct: 1106 RLIR------EMGYSAPIVALTAFAEESNVKECYESGMDHFLSKPIRRPAL 1150
>gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
273]
gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
273]
Length = 967
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 26/136 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L+VL+VED V + + + MLKKLG + G AA+EAM
Sbjct: 710 LNVLVVEDSMVNRNVAVSMLKKLGYSPDVAVCGTAALEAM-------------------- 749
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDL+ MDCQM MDG +ATR IR E + + +S+P++A TA + +
Sbjct: 750 -----RRKAYDLVFMDCQMPEMDGYEATRHIREDE-DLKGSRSVPVVAMTANAMKGDREK 803
Query: 185 CFNSGMDTFLNKPAQE 200
C N+GMD ++ KP ++
Sbjct: 804 CINAGMDDYIAKPLRK 819
>gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter
crescentus CB15]
gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter
crescentus CB15]
gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
Length = 637
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 71/154 (46%), Gaps = 31/154 (20%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G+ +LLVED AV + + +L+ G + DG A VEAM
Sbjct: 511 GVRLLLVEDNAVNRELICAILEPFGVAIETANDGVAGVEAM------------------- 551
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
HYDL+LMD QM MDG ATR IR + E G S PIIA TA V +
Sbjct: 552 ------RQGHYDLVLMDVQMPMMDGLTATREIRAM--EGARGASTPIIAMTANVLPEQVA 603
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
C +GMD L KP A ++E +AR S +
Sbjct: 604 NCMAAGMDDHLGKPISP----AKLLEAVARWSGR 633
>gi|325921895|ref|ZP_08183706.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
19865]
gi|325547597|gb|EGD18640.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
19865]
Length = 718
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 26/148 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ +M
Sbjct: 449 ILLVEDNPVNLLVAQKLLAVLGFDADTATDGEAALSSM---------------------- 486
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A + C
Sbjct: 487 ---DSTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRERCL 542
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARK 214
+GMD +L+KP L A + + R+
Sbjct: 543 AAGMDDYLSKPVAREQLDACLQRWLPRQ 570
>gi|423687673|ref|ZP_17662476.1| sensor histidine kinase [Vibrio fischeri SR5]
gi|371493456|gb|EHN69059.1| sensor histidine kinase [Vibrio fischeri SR5]
Length = 864
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 24/138 (17%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VL+VED A+ Q++ +LKK G V + +G+ A++ +
Sbjct: 743 TVLVVEDNAINQKVASLLLKKAGFCVEIANNGQEALDMVM-------------------- 782
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+ SP Y L+LMDC M MDG AT IR+ E E + + +PIIA TA V ++ +C
Sbjct: 783 --SKTSP-YSLVLMDCMMPIMDGFAATEAIRKWE-ENQEQKRLPIIALTASVFVEDIDKC 838
Query: 186 FNSGMDTFLNKPAQEHLL 203
+ SGMD ++ KP ++ L+
Sbjct: 839 YQSGMDDYVAKPFRKELI 856
>gi|304309736|ref|YP_003809334.1| histidine kinase [gamma proteobacterium HdN1]
gi|301795469|emb|CBL43667.1| predicted histidine kinase [gamma proteobacterium HdN1]
Length = 658
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+VED V Q + LKK+G V + +G+ V+ + G
Sbjct: 511 LHILVVEDNKVNQMVINGYLKKMGCSVEVANNGQEGVDRL------------------GD 552
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
T N P +DLILMDCQM MDG +ATR IR L A ++PIIA TA +
Sbjct: 553 T--TTNRPSFDLILMDCQMPVMDGFEATRRIRALPNPALA--ALPIIAVTANAMEGDRER 608
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
C +GM+ +L+KP +L + I +T+ H
Sbjct: 609 CLQAGMNDYLSKPIDLPVLRSMICKTVHNHHH 640
>gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
SK2]
gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
SK2]
Length = 942
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L V++ ED AV Q + +LK LG TLV DGE A+E +
Sbjct: 813 LKVIVAEDNAVNQLVIDSILKSLGIHATLVSDGEQALELV-------------------- 852
Query: 125 NLETHNSP-HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
N P H+D+I MDC+M MDG +A+R IR LEAE E IIA +A T D +
Sbjct: 853 ----RNRPNHWDIIFMDCEMPIMDGYQASREIRALEAEHEAQPHCWIIALSAHATGDYVQ 908
Query: 184 ECFNSGMDTFLNKPAQEH 201
+ ++G+D +L+KP +
Sbjct: 909 KARDAGVDDYLSKPVSQQ 926
>gi|406893933|gb|EKD38867.1| sensory box histidine kinase/response regulator [uncultured
bacterium]
Length = 879
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 56/217 (25%)
Query: 12 SHPEKLELEHGLQLEFKPVPVTNNII--PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLL 69
+H + L + K P T +++ PQ +G ++ + +LL
Sbjct: 697 NHGSTFRFDAILAKQEKAAPATADMVQLPQLQGDGTTA---------------RAIRILL 741
Query: 70 VEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETH 129
VED + Q + +++LK LG V +G A++A+
Sbjct: 742 VEDNFINQTVAMQILKNLGCRVVAADNGRQALDAI------------------------- 776
Query: 130 NSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS--------------IPIIAFTA 175
+DLI MD QM MDG +ATR IR+ EA + IPIIA TA
Sbjct: 777 KEQSFDLIFMDVQMPEMDGLEATRAIRQWEARRNANHAGRIDDPADHSRDRRIPIIALTA 836
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ ++C ++GMD +L KP +LAA I E +
Sbjct: 837 HAMVGDRQKCLDAGMDDYLAKPVVPAILAAKIKEWLG 873
>gi|239609727|gb|EEQ86714.1| DRK1 histidine kinase [Ajellomyces dermatitidis ER-3]
Length = 1287
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1063 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 1112
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 1113 NHGVTVVSNGLQAVEAI-------------------------KKRRYDVILMDVQMPVMG 1147
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E + G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1148 GFEATGKIR--EYEKKNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMIQT 1205
Query: 207 IVE 209
I++
Sbjct: 1206 ILK 1208
>gi|327355389|gb|EGE84246.1| DRK1 histidine kinase [Ajellomyces dermatitidis ATCC 18188]
Length = 1287
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1063 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 1112
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 1113 NHGVTVVSNGLQAVEAI-------------------------KKRRYDVILMDVQMPVMG 1147
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E + G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1148 GFEATGKIR--EYEKKNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMIQT 1205
Query: 207 IVE 209
I++
Sbjct: 1206 ILK 1208
>gi|406955644|gb|EKD84036.1| hypothetical protein ACD_39C00287G0002 [uncultured bacterium]
Length = 1217
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 38/196 (19%)
Query: 27 FKPVPVT----NNIIPQAEGS---SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79
F P PVT N + +A GS S P T +D L G+ VLLVED + Q+I
Sbjct: 841 FLPKPVTPSNLWNSLGKAFGSPIAKPSLPTMSQETSMD----LRGMRVLLVEDNDLNQQI 896
Query: 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP-HYDLIL 138
+L+ +G VTL +G+ A+E L++ P YDL+L
Sbjct: 897 AKELLQSVGVAVTLADNGKTAIEL----------------------LKSAPDPLPYDLVL 934
Query: 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198
MD QM MDG +AT +R+ EA + +PIIA TA D ++ C++ GM+ ++KP
Sbjct: 935 MDIQMPIMDGHQATLELRK---EARF-KDLPIIALTAHAMEDEKQVCYDEGMNGHISKPI 990
Query: 199 QEHLLAAAIVETIARK 214
+ LL + R+
Sbjct: 991 EPQLLFRLLANWTKRR 1006
>gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum
thermopropionicum SI]
gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum
thermopropionicum SI]
Length = 982
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V +++ + LKKLG L +DG AV A +
Sbjct: 717 ILVAEDSPVNRKLIVAQLKKLGLEAELAEDGREAVRAAS--------------------- 755
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDCQM SMDG A R IRRL E G+ PI+A TA T +C
Sbjct: 756 ----RTAYALILMDCQMPSMDGYDAARAIRRL--EERLGRHTPIVATTAGATRGEREKCL 809
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+GMD +L KP + A + T+AR
Sbjct: 810 AAGMDDYLGKPVR----LADLHRTLAR 832
>gi|261196988|ref|XP_002624897.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
gi|239596142|gb|EEQ78723.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
Length = 1287
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1063 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 1112
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 1113 NHGVTVVSNGLQAVEAI-------------------------KKRRYDVILMDVQMPVMG 1147
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E + G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1148 GFEATGKIR--EYEKKNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMIQT 1205
Query: 207 IVE 209
I++
Sbjct: 1206 ILK 1208
>gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
Length = 862
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 66/131 (50%), Gaps = 24/131 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q++ R+L+K G V V DG AVEA+ +H+
Sbjct: 730 VLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALK-------SDHKA--------- 773
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDL+LMD QM MDG +ATR IR+ E Q IPII TA + C+
Sbjct: 774 -------YDLVLMDIQMPGMDGLEATRRIRKDEL-GSGWQKIPIIGLTANAMKGYQDICY 825
Query: 187 NSGMDTFLNKP 197
+GMD +L KP
Sbjct: 826 EAGMDGYLPKP 836
>gi|410645881|ref|ZP_11356337.1| sensory box histidine kinase/response regulator [Glaciecola
agarilytica NO2]
gi|410134604|dbj|GAC04736.1| sensory box histidine kinase/response regulator [Glaciecola
agarilytica NO2]
Length = 523
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 85/167 (50%), Gaps = 35/167 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
EGL VLLVED + Q + + +LK L V + DG +EA+ L
Sbjct: 390 FEGLQVLLVEDNEINQEVMLAILKGLDVNVFIANDG---LEALA-------------TLS 433
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H L+ +DLILMDCQM ++DG +AT+ IR EA E IPI A TA V D+
Sbjct: 434 HSQRLK------FDLILMDCQMPNLDGYEATKRIRAGEA-GEIFSHIPIAALTANVM-DS 485
Query: 182 ER-ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
ER +C +GM+ +L KP + L + +V K HK QA AQ
Sbjct: 486 ERVKCIEAGMNEYLTKPVEIEALKSVLV-----KYHK-----QAPAQ 522
>gi|357634102|ref|ZP_09131980.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357582656|gb|EHJ47989.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 837
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 26/148 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED+ + + RML+K G VT+ DG+AAVE +
Sbjct: 712 ILLVEDEETNRDVARRMLEKFGWDVTVAADGQAAVEQVF--------------------- 750
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ H+D ILMD QM MDG ATR+IR E ++IPIIA TA + + +
Sbjct: 751 ----ANHFDCILMDIQMPVMDGVAATRLIRTAVPLGEK-RAIPIIAMTAYAMSGDREKFL 805
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARK 214
GMD +++KP + L A + + +AR+
Sbjct: 806 ACGMDEYISKPFEHTDLRAVVEKALARR 833
>gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 769
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ M
Sbjct: 497 MRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSRM-------------------- 536
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD+I MDCQM +DG ATR R LE E+ G+ IPI+A TA A +
Sbjct: 537 -----ESTRYDMIFMDCQMPVLDGYAATRHWRALETES-GGRPIPIVAMTANAMAGDRER 590
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD +L+KP L A + + R++
Sbjct: 591 CLAAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|297743973|emb|CBI36943.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
Query: 14 PEKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSC---PVNDDVTGVDEKKVLEGLSVLLV 70
P L + G + +P TN P+ S P +V + L G VL+
Sbjct: 702 PNDLVGKAGPEPSLSSLPTTNRTTPRKSRSRVRLVKEPEIQEVGTSSNQNPLRGKRVLIA 761
Query: 71 EDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHN 130
ED VL ++ + +LG V +G AVE + + KN+ L
Sbjct: 762 EDSMVLCKLATAHVTRLGGTVEACDNGAKAVELVCNGLRNNTKNNASIILP--------- 812
Query: 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGM 190
YD ILMDC+M MDG +AT+ IR E E + G IPIIA TA + + +GM
Sbjct: 813 ---YDYILMDCEMPEMDGYEATKRIR--EEEQQYGVHIPIIALTAHANGEEAKRTIEAGM 867
Query: 191 DTFLNKPAQEHLLAAAIVETIAR 213
D L+KP + L AI T +R
Sbjct: 868 DYHLSKPLKRETLMGAIEYTNSR 890
>gi|392420591|ref|YP_006457195.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri CCUG
29243]
gi|390982779|gb|AFM32772.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri CCUG
29243]
Length = 915
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 24/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q + +LKK G V L +G AV+ L
Sbjct: 790 ILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVD-----------------------L 826
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ LILMDC+M +DG +A+R IR+LEAE E Q++PIIA TA V A++ +
Sbjct: 827 YRRDPEAVQLILMDCEMPELDGFEASRRIRKLEAELEL-QAVPIIAVTAHVLAEHRQRGL 885
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
SGMD F+ KP + L A +
Sbjct: 886 ESGMDEFIGKPLESRQLYACL 906
>gi|453080656|gb|EMF08706.1| HATPase_c-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1198
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLK--K 86
P P+T+ P ++ + D G + ++ + +L+ ED V Q + +RMLK K
Sbjct: 930 PPPLTST--PSSQARAIGKAGKDIKAGKEAQQDFSNVRILVAEDNKVNQEVILRMLKLEK 987
Query: 87 LGAGVTLVKDGEAA---VEAMTLMINA-------AGKNHQIQNLHHGSNLETHNSPH-YD 135
+ VT+ DG+AA ++A TL A A ++ ++ S+ T PH YD
Sbjct: 988 I-FDVTIAHDGQAALDLIKASTLSSEASQDSDEQASSSNSAEDSVSSSSSTTSPRPHPYD 1046
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195
L+ MD QM MDG +TR+IR + G + PI+A TA N C+ +GMD FL
Sbjct: 1047 LVFMDIQMPRMDGLTSTRLIR------QHGYTGPIVALTAYAEQSNVEGCYQAGMDYFLA 1100
Query: 196 KPAQEHLLAAAIVE 209
KP + LL + +
Sbjct: 1101 KPIKRPLLRKVLTD 1114
>gi|452748618|ref|ZP_21948396.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
NF13]
gi|452007524|gb|EMD99778.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
NF13]
Length = 915
Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 24/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q + +LKK G V L +G AV+ L
Sbjct: 790 ILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVD-----------------------L 826
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ LILMDC+M +DG +A+R IR+LEAE E Q++PIIA TA V A++ +
Sbjct: 827 YRRDPEAVQLILMDCEMPELDGFEASRRIRKLEAELEL-QAVPIIAVTAHVLAEHRQRGL 885
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
SGMD F+ KP + L A +
Sbjct: 886 ESGMDEFIGKPLESRQLYACL 906
>gi|154279698|ref|XP_001540662.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
gi|150412605|gb|EDN07992.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
Length = 1288
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1064 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 1113
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 1114 NHGVTVVSNGLQAVEAV-------------------------KKRRYDVILMDVQMPVMG 1148
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1149 GFEATGKIR--EYEKSNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMMQT 1206
Query: 207 IVE 209
I++
Sbjct: 1207 ILK 1209
>gi|378732184|gb|EHY58643.1| PAS/PAC sensor hybrid histidine kinase [Exophiala dermatitidis
NIH/UT8656]
Length = 992
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 23/140 (16%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E K ++ ++LLVED + Q++G+RML+ LG V + DG+ AV+++ ++ I
Sbjct: 859 ENKFIKESTILLVEDNKINQKLGVRMLEALGYKVIVANDGQEAVDSLV------ERDEDI 912
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
DL+LMD M DG AT+ IR +E+ + PI+ FTA+V
Sbjct: 913 -----------------DLVLMDQSMPQKDGITATKEIREMESLGSLSRKRPIVMFTAVV 955
Query: 178 TADNERECFNSGMDTFLNKP 197
D + C ++G D FL KP
Sbjct: 956 GPDAQALCISAGADAFLAKP 975
>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1349
Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 32 VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
V N I A PVN+ + + + VL+ ED V Q++ RML KLG
Sbjct: 1151 VRTNSITAAPAVRPEPPVNEMRAALALRFGGVPVRVLVAEDNVVNQKVSARMLDKLGIRA 1210
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
+ DG AV L+ YDLI MDCQM MDG A
Sbjct: 1211 DVAADGREAVALFGLV-------------------------PYDLIFMDCQMPEMDGYAA 1245
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TR IRR E G+ +PI A TA V C +GMD + KP + +L ET+
Sbjct: 1246 TREIRRREG---PGRRVPIAAMTAEVLGGCRELCLAAGMDDHIPKPVKMEVL----FETL 1298
Query: 212 ARKSHKFSCDEQAEA 226
R +C E ++
Sbjct: 1299 RRWIPARNCPEPGDS 1313
>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
Length = 1205
Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 70/146 (47%), Gaps = 27/146 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L VLLVED V QR+ R+L+KLG GVTL +G+ AV
Sbjct: 951 LPPLRVLLVEDNPVNQRLASRLLEKLGHGVTLASNGQEAV-------------------- 990
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ + +D+I+MD QM MDG +AT IR LE Q PIIA TA +
Sbjct: 991 -----DWYGREQFDMIMMDVQMPFMDGFEATSAIRALELGGSRRQ--PIIAMTAHAMRGD 1043
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
C +GMD ++ KP LAA +
Sbjct: 1044 RERCLEAGMDGYVPKPIMLDELAAEM 1069
>gi|442611453|ref|ZP_21026159.1| hypothetical protein PALB_31220 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441747381|emb|CCQ12221.1| hypothetical protein PALB_31220 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1247
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 29/141 (20%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D+ + GLSVL+ EDQ + Q I + +LK GA VT+ +G+ A++A+
Sbjct: 905 DKSTLFSGLSVLVAEDQPINQEIAMEILKHYGATVTIANNGQEAIDAL------------ 952
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
S +DLILMD QM +DG ATR+IR+ +++E +PI+A TA
Sbjct: 953 -------------ESETFDLILMDMQMPIVDGLTATRIIRKHYSKSE----LPILAMTAN 995
Query: 177 VTADNERECFNSGMDTFLNKP 197
++ C +GM+ L KP
Sbjct: 996 AMHEDITRCLEAGMNDHLAKP 1016
>gi|326490519|dbj|BAJ84923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 256
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 39/161 (24%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
+L G ++L+V+D V R+ LKK GA V V+ G+ A+E +
Sbjct: 111 LLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALELL---------------- 154
Query: 121 HHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEA-------------ETGQ 166
+PH +DL LMD QM MDG +ATR IR +EA+A +TG
Sbjct: 155 ---------QAPHKFDLCLMDIQMPEMDGFEATRQIRAIEAKAHNGDNSEPGSTAKKTGW 205
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+P++A TA V EC +GMD +++KP +E L A+
Sbjct: 206 HLPVLAMTADVIQATHEECTKNGMDGYVSKPFEEKQLFKAV 246
>gi|212526372|ref|XP_002143343.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Talaromyces marneffei ATCC 18224]
gi|210072741|gb|EEA26828.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Talaromyces marneffei ATCC 18224]
Length = 1118
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED AV Q + +RMLK + +T+VKDG+ A + + ++ K
Sbjct: 986 IRVLVAEDNAVNQEVVLRMLKLEDIYDITVVKDGQEAYDTVKAAMSEGNK---------- 1035
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DLI MD QM ++DG ++TR+IR++ G S PI+A +A N +
Sbjct: 1036 ----------FDLIFMDIQMPNLDGLESTRLIRQM------GYSAPIVALSAFAEESNIK 1079
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
+C SGMD FL+KP + L
Sbjct: 1080 DCMESGMDMFLSKPIRRPAL 1099
>gi|167526230|ref|XP_001747449.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774284|gb|EDQ87916.1| predicted protein [Monosiga brevicollis MX1]
Length = 1408
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 25/132 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+LL ED + +I +R L +G V L +DG+ AV+
Sbjct: 1127 ILLAEDNPLNVQIALRFLDSMGMKDVILARDGQQAVDKFA-------------------- 1166
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+DLILMDCQM ++DG AT++IRR E E G+ +PI+A TA +++ +C
Sbjct: 1167 ----TEGPFDLILMDCQMPNLDGFAATKLIRRYEHEHLLGREVPIVAMTAFSLPEDQEKC 1222
Query: 186 FNSGMDTFLNKP 197
+ GM+ +++KP
Sbjct: 1223 LDQGMNDYISKP 1234
>gi|407801786|ref|ZP_11148629.1| sensor histidine kinase/response regulator [Alcanivorax sp. W11-5]
gi|407024103|gb|EKE35847.1| sensor histidine kinase/response regulator [Alcanivorax sp. W11-5]
Length = 781
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 66/134 (49%), Gaps = 25/134 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G+ VLLVED AV Q + +L +LG TL GE A+E + AAG
Sbjct: 652 GIKVLLVEDNAVNQMVVRALLGRLGVSATLASGGEEALELL-----AAGD---------- 696
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DLILMDC+M +DG + TR IR LE PIIA TA +++
Sbjct: 697 ---------RFDLILMDCEMPGLDGYETTRRIRLLERSGRLPHR-PIIALTAHALSEHRE 746
Query: 184 ECFNSGMDTFLNKP 197
C +GMD L+KP
Sbjct: 747 RCLAAGMDDHLSKP 760
>gi|225562695|gb|EEH10974.1| DRK1 histidine kinase [Ajellomyces capsulatus G186AR]
Length = 1288
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1064 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 1113
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 1114 NHGVTVVSNGLQAVEAV-------------------------KKRRYDVILMDVQMPVMG 1148
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1149 GFEATGKIR--EYEKSNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMIQT 1206
Query: 207 IVE 209
I++
Sbjct: 1207 ILK 1209
>gi|440794648|gb|ELR15805.1| histidine kinase [Acanthamoeba castellanii str. Neff]
Length = 1355
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 29/180 (16%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
V+ G +L+VED + Q++ ++ML VT+ ++G A++ + G H
Sbjct: 1075 VMRGKRILVVEDNLINQKVALKMLSSFDCRVTVAENGLVAIKLFEESFRSRGGRH----- 1129
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA---EAETGQS---------- 167
T P + ILMD QM +DG + IR LEA EAE ++
Sbjct: 1130 ------ATDGEPLFHAILMDIQMPVIDGFETAIRIRELEAQFNEAEAARTPAPSGHQPQV 1183
Query: 168 --IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAE 225
+PIIA TA T + +++C GM+ FL+KP ++ L + E I + + DE AE
Sbjct: 1184 AAVPIIALTASATKEYQQKCLTKGMNCFLSKPLKKETLVRTLTEVIKQAGY---YDEAAE 1240
>gi|147861778|emb|CAN78916.1| hypothetical protein VITISV_032223 [Vitis vinifera]
Length = 1143
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 84/189 (44%), Gaps = 17/189 (8%)
Query: 22 GLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGV---DEKKVLEGLSVLLVEDQAVLQR 78
G +L +P TN P+ S ++ V + L G VL+ ED VL +
Sbjct: 963 GPELSLSSLPTTNRTTPRKSRSXVRLVKESEIQEVGTSSNQNPLRGKRVLIAEDSMVLCK 1022
Query: 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138
+ + +LG V +G AVE + + KN+ L YD IL
Sbjct: 1023 LATAHVTRLGGTVEACDNGAKAVELVCNGLRNNXKNNASIILP------------YDYIL 1070
Query: 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198
MDC+M MDG +AT+ IR E E + G IPIIA TA + + +GMD L+KP
Sbjct: 1071 MDCEMPEMDGYEATKRIR--EEEQQYGVHIPIIALTAHANGEEAKRTIEAGMDYHLSKPL 1128
Query: 199 QEHLLAAAI 207
+ L AI
Sbjct: 1129 KRETLMGAI 1137
>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
Length = 2059
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 27/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED V QR+ +R+L+K G VTL ++G AV A +
Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEI-------------------- 1779
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H+DLILMD QM M G +AT IR+LE+ G PIIA TA A + +C
Sbjct: 1780 -----KHFDLILMDVQMPHMGGFEATAQIRKLESNE--GIHTPIIAMTAHALARDRVKCI 1832
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD +++KP L + I
Sbjct: 1833 EAGMDDYISKPINPDQLKSMI 1853
>gi|325092630|gb|EGC45940.1| DRK1 histidine kinase [Ajellomyces capsulatus H88]
Length = 1288
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1064 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 1113
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 1114 NHGVTVVSNGLQAVEAV-------------------------KKRRYDVILMDVQMPVMG 1148
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 1149 GFEATGKIR--EYEKSNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMIQT 1206
Query: 207 IVE 209
I++
Sbjct: 1207 ILK 1209
>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 815
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 70/140 (50%), Gaps = 26/140 (18%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E K+L S+L+ ED V Q + ML +LG V +V++GE AV A +G+
Sbjct: 544 EPKLLFDASILVAEDNPVNQDVVRHMLGQLGCRVEIVENGELAVAA-------SGREG-- 594
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
Y L+ MDCQM MDG ATR IR EA E G+ +PI+A TA
Sbjct: 595 ----------------YHLVFMDCQMPQMDGFAATRAIRGREA-GEGGRRLPIVALTANA 637
Query: 178 TADNERECFNSGMDTFLNKP 197
A + C +GMD +L KP
Sbjct: 638 LAGDRELCLAAGMDDYLTKP 657
>gi|410632756|ref|ZP_11343407.1| signal transduction histidine-protein kinase BarA [Glaciecola arctica
BSs20135]
gi|410147621|dbj|GAC20274.1| signal transduction histidine-protein kinase BarA [Glaciecola arctica
BSs20135]
Length = 1047
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
++L+VED + Q+I I MLK L L +G+ EA+ ++ N H+GS
Sbjct: 921 NILIVEDNYINQQIVIEMLKSLDCDYHLAGNGQ---EALNMLSN-----------HNGS- 965
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+DLILMDCQM M+G ATR IR E + + ++IPIIA TA ++ +C
Sbjct: 966 --------FDLILMDCQMPLMNGYDATRHIRATEHQ-QFDKNIPIIALTANAMKGDDIKC 1016
Query: 186 FNSGMDTFLNKPAQEHLLA 204
F +GM+ +L+KP LA
Sbjct: 1017 FEAGMNDYLSKPFLSEQLA 1035
>gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016]
gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
Length = 881
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L+K G + +G+ A++A+T GK
Sbjct: 760 ILIAEDNLMNQKIASFFLEKAGFDYLITSNGQEALDAIT----QGGK------------- 802
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D +LMDC M MDG ATR IRR E E +G++ PIIA TA V ++ + CF
Sbjct: 803 -------FDAVLMDCMMPVMDGITATREIRRWETEQGSGKT-PIIALTASVLEEDIQSCF 854
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 855 EAGMDAYLPKPYKSNQL 871
>gi|406894060|gb|EKD38961.1| sensory box histidine kinase/response regulator, partial
[uncultured bacterium]
Length = 378
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 37/163 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED + Q + + +LK LG V V++G A++ +IQ
Sbjct: 231 IRILLAEDNFINQTVALHILKNLGCQVVAVENGRQALD-------------EIQ------ 271
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE---AETGQS---------IPIIA 172
+ +DLILMD QM MDG +AT+ IR E+ A+ G++ IPIIA
Sbjct: 272 ------TGEFDLILMDLQMPDMDGLEATQAIREWESRRKSADGGKTTAGKPPQRRIPIIA 325
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
TA D+ ++C +GMD FL KP ++LAA + + +A ++
Sbjct: 326 LTAHALIDDRQKCLEAGMDDFLAKPVVPNILAATLNQWLADRA 368
>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 1153
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 26/159 (16%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL +LL ED V +++ L+K G V K+G A+E
Sbjct: 885 GLRILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALERFC------------------ 926
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
P +DL+LMDCQM MDG +ATR IR+ E E + S PIIA TA + N
Sbjct: 927 ------QQP-FDLVLMDCQMPVMDGLEATRAIRQREGE-QGSDSTPIIAMTAFSSEQNLA 978
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDE 222
+C +GMD + KP + L ++E ARK + S E
Sbjct: 979 DCRAAGMDGKIGKPFRPEALYQLLLEHTARKPVRSSFTE 1017
>gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
Length = 742
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
DE ++LLVED + Q++ + +LG V + K+G+ A I+ +NHQ
Sbjct: 612 DEITYKTSRAILLVEDNLINQKVASININQLGLDVLVAKNGQEA-------IDIYAENHQ 664
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ +L+LMDC M MDG AT IR E EA + IPI+A TA
Sbjct: 665 ----------------NINLVLMDCMMPVMDGFDATIGIREYE-EAYSLSRIPIVALTAS 707
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ D+ + CF+SGMD +L KP ++ + I
Sbjct: 708 ILEDDIQRCFDSGMDDYLPKPFKKEIFREKI 738
>gi|411011072|ref|ZP_11387401.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas aquariorum AAK1]
Length = 886
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 28/136 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+GL +LL ED + Q++ + +L+ +GA V++ +G A++ T
Sbjct: 542 FDGLRILLAEDNELNQQVALELLQAVGAKVSVASNGAIALDMAT---------------- 585
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+P YDLILMD QM MDG ATR +R+ E TGQ IPI+A TA V A +
Sbjct: 586 --------KAP-YDLILMDMQMPVMDGLAATRQLRQQEG---TGQHIPILAMTANVMAGD 633
Query: 182 ERECFNSGMDTFLNKP 197
C +GMD + KP
Sbjct: 634 RERCLAAGMDDHIAKP 649
>gi|119503084|ref|ZP_01625169.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
gi|119461430|gb|EAW42520.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
Length = 1448
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 30/165 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q + +LK +G L ++G +EA+TL
Sbjct: 1196 VLIVEDNKVNQILVQEILKSMGLRSNLAENG---LEAVTLF------------------- 1233
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMDCQM MDG +AT++IR +E+E + + PIIA TA A+ +
Sbjct: 1234 ---RRQRFDLVLMDCQMPVMDGFEATKLIREIESERDY-ERTPIIALTAAARAEEYEQAL 1289
Query: 187 NSGMDTFLNKP---AQ-EHLLAAAIVETIARKSHKFSCDEQAEAQ 227
+SGMD F+ KP AQ E+ + A + IA + K S E A Q
Sbjct: 1290 SSGMDEFMTKPFNVAQLENRIIATLTHKIANDTIKGSATEHAAGQ 1334
>gi|428777290|ref|YP_007169077.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
gi|428691569|gb|AFZ44863.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
Length = 1478
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 48/170 (28%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+PV + +IP + S+SC VL+VED V Q + MLKK
Sbjct: 1217 QPVSTSQTVIPSPQLKSNSC-------------------VLVVEDNRVNQLVIQGMLKKY 1257
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V + DG +EA+ ++ HYDL+ MDCQM +MD
Sbjct: 1258 PLQVQIAHDG---LEALVML----------------------QKSHYDLVFMDCQMPNMD 1292
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G +ATR IR + Q+IPIIA TA ++ +C +GM+ +++KP
Sbjct: 1293 GYEATRQIR----AGKHNQTIPIIAMTAYAMVGDKEKCLAAGMNDYVSKP 1338
>gi|71906648|ref|YP_284235.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71846269|gb|AAZ45765.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
Length = 655
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLLVED A+ + I + ML +G + +G AVEA+
Sbjct: 535 GKRVLLVEDDALNREIALSMLDDVGLAADIACNGRQAVEAI------------------- 575
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YDLILMD QM MDG ATR IR + S+PIIA TA D+ +
Sbjct: 576 ------GNQRYDLILMDMQMPVMDGLAATREIRAMPQF----DSVPIIAMTANAFDDDRQ 625
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
C ++GM+ F+ KP + +LL AA++ ++
Sbjct: 626 RCRDAGMNDFVAKPVEPYLLFAALLRCLS 654
>gi|413932654|gb|AFW67205.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 875
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
VP + + E S + DD K L G+ +LL ED VLQ I +++ +LGA
Sbjct: 570 VPCVEDTVASTEASCLAQKPGDD-------KPLAGMRILLAEDNLVLQSIQRKIMNQLGA 622
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
VT+ ++G AV + + A + E S Y +I MDCQM MDG
Sbjct: 623 FVTVAQNGTMAVNLLREALEQANASE-----------EDIVSLPYHVIFMDCQMPGMDGY 671
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+AT++IR E E G PIIA TA ++ ++ ++GMD L KP + A+
Sbjct: 672 EATKLIR--EEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMDLHLAKPISRKKIVDAV-- 727
Query: 210 TIARKSHKFS 219
R KFS
Sbjct: 728 ---RSFCKFS 734
>gi|332306269|ref|YP_004434120.1| integral membrane sensor hybrid histidine kinase [Glaciecola sp.
4H-3-7+YE-5]
gi|332173598|gb|AEE22852.1| integral membrane sensor hybrid histidine kinase [Glaciecola sp.
4H-3-7+YE-5]
Length = 573
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 84/167 (50%), Gaps = 35/167 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
EGL VLLVED + Q + + +LK L V + DG +EA+ L
Sbjct: 440 FEGLQVLLVEDNEINQEVMLAILKGLDVNVFIANDG---LEALA-------------TLS 483
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H L+ +DLILMDCQM ++DG KATR IR EA E IPI A TA V D+
Sbjct: 484 HSQRLK------FDLILMDCQMPNLDGYKATRRIRAGEA-GEIFSHIPIAALTANVM-DS 535
Query: 182 ER-ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
ER + +GM+ +L KP + L + +V K HK QA AQ
Sbjct: 536 ERVKSIEAGMNEYLTKPVEIEALKSVLV-----KYHK-----QAPAQ 572
>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
Length = 1079
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 70/147 (47%), Gaps = 27/147 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED AV QR+ + L+ G VT+ +G AVE T
Sbjct: 792 LRILLAEDNAVNQRLAVVNLESWGHTVTVAHNGREAVELFT------------------- 832
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ +DLILMD QM M G +AT IRR EA +G +PI+A TA V + E
Sbjct: 833 ------AQPFDLILMDSQMPRMGGFEATAEIRR--REAGSGAHVPIVAMTANVMKGSREE 884
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GMD ++ KP + H L I +
Sbjct: 885 CLGAGMDGYVAKPMRRHELIKEIAAVV 911
>gi|406830748|ref|ZP_11090342.1| PAS sensor protein [Schlesneria paludicola DSM 18645]
Length = 1117
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+K + SVLL ED + Q++ I +L+K G VT+ DG+ AV N +G+
Sbjct: 848 RKATQSKSVLLAEDSLINQKLAIGLLEKWGHRVTVANDGQEAV-------NLSGQYI--- 897
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+DL LMD QM MDG ATR IRR E TG +PI+A TA
Sbjct: 898 ---------------FDLALMDVQMPEMDGLDATRAIRR--REILTGVHLPILAMTAHAM 940
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ C +GMD +L KP + L AI
Sbjct: 941 KGDRERCLAAGMDDYLMKPIRAEQLFQAI 969
>gi|423199297|ref|ZP_17185880.1| hypothetical protein HMPREF1171_03912 [Aeromonas hydrophila SSU]
gi|404629292|gb|EKB26053.1| hypothetical protein HMPREF1171_03912 [Aeromonas hydrophila SSU]
Length = 886
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 28/136 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+GL +LL ED + Q++ + +L+ +GA V++ +G A++ T
Sbjct: 542 FDGLQILLAEDNELNQQVALELLQAVGAKVSVASNGAIALDMAT---------------- 585
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+P YDLILMD QM MDG ATR +R+ E TGQ IPI+A TA V A +
Sbjct: 586 --------KAP-YDLILMDMQMPVMDGLAATRQLRQQEG---TGQHIPILAMTANVMAGD 633
Query: 182 ERECFNSGMDTFLNKP 197
C +GMD + KP
Sbjct: 634 RERCLAAGMDDHIAKP 649
>gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
Length = 881
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L+K G + +G+ A++A+T GK
Sbjct: 760 ILIAEDNLMNQKIASFFLEKAGFDYLITSNGQEALDAIT----QGGK------------- 802
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D +LMDC M MDG ATR IRR E E +G++ PIIA TA V ++ + CF
Sbjct: 803 -------FDAVLMDCMMPVMDGITATREIRRWETEQGSGKT-PIIALTASVLEEDIQSCF 854
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 855 EAGMDAYLPKPYKSNQL 871
>gi|326424287|ref|NP_762701.2| chemotaxis protein CheY [Vibrio vulnificus CMCP6]
gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
Length = 881
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L+K G + +G+ A++A+T GK
Sbjct: 760 ILIAEDNLMNQKIASFFLEKAGFDYLITSNGQEALDAIT----QGGK------------- 802
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D +LMDC M MDG ATR IRR E E +G++ PIIA TA V ++ + CF
Sbjct: 803 -------FDAVLMDCMMPVMDGITATREIRRWETEQGSGKT-PIIALTASVLEEDIQSCF 854
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 855 EAGMDAYLPKPYKSNQL 871
>gi|413932652|gb|AFW67203.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
gi|413932653|gb|AFW67204.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 886
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
VP + + E S + DD K L G+ +LL ED VLQ I +++ +LGA
Sbjct: 570 VPCVEDTVASTEASCLAQKPGDD-------KPLAGMRILLAEDNLVLQSIQRKIMNQLGA 622
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
VT+ ++G AV + + A + E S Y +I MDCQM MDG
Sbjct: 623 FVTVAQNGTMAVNLLREALEQANASE-----------EDIVSLPYHVIFMDCQMPGMDGY 671
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+AT++IR E E G PIIA TA ++ ++ ++GMD L KP + A+
Sbjct: 672 EATKLIR--EEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMDLHLAKPISRKKIVDAV-- 727
Query: 210 TIARKSHKFS 219
R KFS
Sbjct: 728 ---RSFCKFS 734
>gi|59713543|ref|YP_206318.1| sensor histidine kinase [Vibrio fischeri ES114]
gi|59481791|gb|AAW87430.1| sensor histidine kinase, GacS/BarA family [Vibrio fischeri ES114]
Length = 864
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 24/138 (17%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VL+VED A+ Q++ +LKK G V + +G+ A++ +
Sbjct: 743 TVLVVEDNAINQKVASLLLKKAGFCVEIANNGQEALDMVM-------------------- 782
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+ SP Y L+LMDC M MDG AT IR+ E E + + +PIIA TA V ++ +C
Sbjct: 783 --SKTSP-YSLVLMDCMMPIMDGFAATEAIRKWE-ENQEQKRLPIIALTASVFIEDIDKC 838
Query: 186 FNSGMDTFLNKPAQEHLL 203
+ SGMD ++ KP ++ L+
Sbjct: 839 YQSGMDDYVAKPFRKELI 856
>gi|218677263|ref|YP_002396082.1| two-component sensor [Vibrio splendidus LGP32]
gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32]
Length = 808
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 27/147 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ MLKKLG V + +GE VE
Sbjct: 676 VLVVEDSRVNQQVAKMMLKKLGFEVDIADNGEIGVEKF---------------------- 713
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y +I MDCQM +DG +AT+ IR LE T + IPI+A TA V ++ CF
Sbjct: 714 ---KANDYVMIFMDCQMPVLDGFEATKQIRALEEG--TSKHIPIVALTANVVQRDKHLCF 768
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ GMD FL KP + L + +++
Sbjct: 769 DVGMDEFLPKPVNQGKLREIVASFLSK 795
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 56 VDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG--EAAVEAMTLMINAAG 112
VDE + +SVLLV+D + RI L+ G VK E A +A+ L+ +
Sbjct: 476 VDESNIDFNKVSVLLVDDSQLNMRITSTQLQSFG-----VKSECCETATQALELVSESVA 530
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR-VIRRLEAEAETGQSIP-I 170
K S YDL+L+D M S+DG + R +I R + ++ P +
Sbjct: 531 K-----------------SLPYDLVLIDKVMPSIDGFQLARSLIERFD------KACPKL 567
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ +A +E G ++ +P Q++ L + E +AR +
Sbjct: 568 VMISADPRKQDEARAKQVGFVAYIARPYQDNQLKWTLSEVLARSA 612
>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
Length = 1362
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ + +LK G + +V +G AV KN +
Sbjct: 1081 LKILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVNER--------KNRE-------- 1124
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DLILMD QM MDG +ATR IR E E ETG+ +PIIA TA +
Sbjct: 1125 ---------FDLILMDVQMPEMDGLEATRQIR--EYEQETGEHVPIIAMTAHAMKGDRER 1173
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GMD +++KP + L + I E +
Sbjct: 1174 CLEAGMDGYVSKPVRVRELFSTIEECL 1200
>gi|413932651|gb|AFW67202.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 990
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
VP + + E S + DD K L G+ +LL ED VLQ I +++ +LGA
Sbjct: 570 VPCVEDTVASTEASCLAQKPGDD-------KPLAGMRILLAEDNLVLQSIQRKIMNQLGA 622
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
VT+ ++G AV + + A + E S Y +I MDCQM MDG
Sbjct: 623 FVTVAQNGTMAVNLLREALEQANASE-----------EDIVSLPYHVIFMDCQMPGMDGY 671
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+AT++IR E E G PIIA TA ++ ++ ++GMD L KP + A+
Sbjct: 672 EATKLIR--EEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMDLHLAKPISRKKIVDAV-- 727
Query: 210 TIARKSHKFS 219
R KFS
Sbjct: 728 ---RSFCKFS 734
>gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
Length = 754
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ +M
Sbjct: 482 VRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASM-------------------- 521
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A +
Sbjct: 522 -----ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRER 575
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD +L+KP L A + + R++
Sbjct: 576 CLAAGMDDYLSKPVAREQLDACLQRWLPRQA 606
>gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1148
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 48 PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
P VD+ K+L +L+V+D V +R+ MLKK GA V+ V G AV+A
Sbjct: 905 PATKRAVKVDDSKLLSDKRILVVDDNMVNRRVATSMLKKYGAIVSSVNGGAEAVDA---- 960
Query: 108 INAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE----AE 163
++N L DLI+MD QM MDG +ATR IR E E
Sbjct: 961 ---------VKNRKEDEKL--------DLIVMDIQMPEMDGWEATRRIRNWEVENCFICR 1003
Query: 164 TG-------QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE 200
T +PI+A TA V EC NSGMD +L K Q+
Sbjct: 1004 TKNISWCRHHRLPIVAVTADVLKGTHTECINSGMDDYLTKADQK 1047
>gi|346723423|ref|YP_004850092.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346648170|gb|AEO40794.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 754
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ +M
Sbjct: 484 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASM---------------------- 521
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A + C
Sbjct: 522 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRERCL 577
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 578 AAGMDDYLSKPVAREQLDACLQRWLPRQA 606
>gi|424046470|ref|ZP_17784033.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
gi|408885091|gb|EKM23813.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
Length = 639
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q++ ML+KLG V + + GE A++ + HQ
Sbjct: 509 ILVVEDTAVNQKVVRIMLEKLGMQVNVAEHGEEALQQC--------QEHQ---------- 550
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMDCQM MDG AT IR++ E G +PIIA +A V ++++ CF
Sbjct: 551 -------FDLILMDCQMPVMDGFIATENIRKM---GEWGLQVPIIALSANVIKEDQQRCF 600
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GM+ F+ KP + L
Sbjct: 601 DVGMNEFVAKPVTKERL 617
>gi|340923874|gb|EGS18777.1| histidine kinase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1321
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LL ED AV QR+ +++L+K VT+V +GE AVEA+
Sbjct: 1099 FEILLAEDNAVNQRLAVKILEKYHHVVTVVGNGEEAVEAV-------------------- 1138
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D+ILMD QM M G +AT IR EA T Q PIIA TA + +
Sbjct: 1139 -----KRKKFDVILMDVQMPVMGGFEATAKIREYEASLPTPQRTPIIALTAHAMMGDREK 1193
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C + MD +L+KP Q+ A +++TI +
Sbjct: 1194 CLEAQMDEYLSKPLQQ----ANLIQTILK 1218
>gi|350554177|ref|ZP_08923307.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349788353|gb|EGZ42356.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1595
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 30/148 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED + Q++ + +L+KLG V +G+ AVE +
Sbjct: 1329 VRILLVEDNSTNQQVALGILRKLGLKADAVGNGQEAVETVI------------------- 1369
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
N P YDLILMD QM MDG +ATR IR L+ +A IPI+A TA ++
Sbjct: 1370 -----NIP-YDLILMDVQMPVMDGLQATRAIRALD-KAAINTDIPIVAMTAHAMQGDKER 1422
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIA 212
C +GM+ +L+KP H +A ET+A
Sbjct: 1423 CLAAGMNDYLSKPLVPHQVA----ETLA 1446
>gi|345561197|gb|EGX44293.1| hypothetical protein AOL_s00193g21 [Arthrobotrys oligospora ATCC
24927]
Length = 1159
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 27/147 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
+E + VL+ ED V Q + RML+ + + + KDG+ AV N + L
Sbjct: 989 MERIRVLVAEDNPVNQEVVSRMLRLESVYDIVIAKDGQEAV------------NRVKEAL 1036
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G H+ +ILMD QM ++DG +AT VIR L G PI+A +A T +
Sbjct: 1037 SEGK--------HFHIILMDVQMPTLDGIQATSVIRSL------GYRAPIVALSAYSTEN 1082
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAI 207
N +EC++SGMD F++KP ++ L +
Sbjct: 1083 NIKECYDSGMDYFISKPVKKSQLRTVL 1109
>gi|413932650|gb|AFW67201.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 1021
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
VP + + E S + DD K L G+ +LL ED VLQ I +++ +LGA
Sbjct: 570 VPCVEDTVASTEASCLAQKPGDD-------KPLAGMRILLAEDNLVLQSIQRKIMNQLGA 622
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
VT+ ++G AV + + A + E S Y +I MDCQM MDG
Sbjct: 623 FVTVAQNGTMAVNLLREALEQANASE-----------EDIVSLPYHVIFMDCQMPGMDGY 671
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+AT++IR E E G PIIA TA ++ ++ ++GMD L KP + A+
Sbjct: 672 EATKLIR--EEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMDLHLAKPISRKKIVDAV-- 727
Query: 210 TIARKSHKFS 219
R KFS
Sbjct: 728 ---RSFCKFS 734
>gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 769
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ M
Sbjct: 497 MRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSRM-------------------- 536
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD+I MDCQM +DG ATR R LE E+ G+ +PI+A TA A +
Sbjct: 537 -----ESTRYDMIFMDCQMPVLDGYAATRHWRALETES-GGRPVPIVAMTANAMAGDRER 590
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD +L+KP L A + + R++
Sbjct: 591 CLAAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|392542571|ref|ZP_10289708.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1103
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 22/159 (13%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q + + MLKKLG +T ++ E + A+ L+ K+HQ
Sbjct: 965 ILLVEDNKVNQVVALSMLKKLG--ITHIEVAENGLLAIELL-----KSHQ---------- 1007
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ ++LILMDCQM MDG + T +IR A E+ Q + I+A TA + + +C
Sbjct: 1008 ---DECQFELILMDCQMPEMDGYRTTELIRD-GAAGESYQGVKILAMTANAMSGDREKCL 1063
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAE 225
N+GM+ +L KP E L+ + + KS S D+ E
Sbjct: 1064 NAGMNDYLTKPISEEPLSEKL-QYWLYKSEYASSDDTEE 1101
>gi|339484541|ref|YP_004696327.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806686|gb|AEJ02928.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 921
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 65/131 (49%), Gaps = 30/131 (22%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED V Q + ML KLG + DG+ A+ + IQN
Sbjct: 666 VLLAEDNPVNQEVAKAMLAKLGLDTVIAHDGQQAL-------------YLIQN------- 705
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLILMDCQM +MDG +AT IR+ + G S IIA TA T D+ + C
Sbjct: 706 -----NQYDLILMDCQMPNMDGFEATAHIRQ-----QFGNSHTIIALTANATEDDRKRCL 755
Query: 187 NSGMDTFLNKP 197
+ GM+ FL+KP
Sbjct: 756 DGGMNDFLSKP 766
>gi|240279503|gb|EER43008.1| DRK1 histidine kinase [Ajellomyces capsulatus H143]
Length = 505
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 281 QPIDLGNGMLPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKC 330
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G AVEA+ YD+ILMD QM M
Sbjct: 331 NHGVTVVSNGLQAVEAV-------------------------KKRRYDVILMDVQMPVMG 365
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E G S PIIA TA + +C + MD +L KP +++ +
Sbjct: 366 GFEATGKIR--EYEKSNGLSRTPIIALTAHAMLGDREKCIQAQMDEYLAKPLKQNQMIQT 423
Query: 207 IVE 209
I++
Sbjct: 424 ILK 426
>gi|428777507|ref|YP_007169294.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
gi|428691786|gb|AFZ45080.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
Length = 1567
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 30/150 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L +LL ED V Q++ ++ LK+LG +V++G AA+ A
Sbjct: 1313 FSNLKILLAEDNPVNQKVILKTLKRLGYTADVVENGRAAITA------------------ 1354
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIAFTALVTAD 180
LET YDLILMD +M MDG AT+ IR + TG+ P IIA TA VT +
Sbjct: 1355 ----LETQ---PYDLILMDLRMPEMDGITATQEIR----DRWTGKQRPRIIALTADVTPE 1403
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVET 210
+++C GMD +L+KP L A + E+
Sbjct: 1404 VQKQCVEVGMDAYLSKPVMIESLTAVLQES 1433
>gi|225437547|ref|XP_002270319.1| PREDICTED: histidine kinase CKI1-like [Vitis vinifera]
Length = 1110
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 30 VPVTNNIIPQAEGSSSSC---PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKK 86
+P TN P+ S P +V + L G VL+ ED VL ++ + +
Sbjct: 938 LPTTNRTTPRKSRSRVRLVKEPEIQEVGTSSNQNPLRGKRVLIAEDSMVLCKLATAHVTR 997
Query: 87 LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM 146
LG V +G AVE + + KN+ L YD ILMDC+M M
Sbjct: 998 LGGTVEACDNGAKAVELVCNGLRNNTKNNASIILP------------YDYILMDCEMPEM 1045
Query: 147 DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
DG +AT+ IR E E + G IPIIA TA + + +GMD L+KP + L A
Sbjct: 1046 DGYEATKRIR--EEEQQYGVHIPIIALTAHANGEEAKRTIEAGMDYHLSKPLKRETLMGA 1103
Query: 207 IVETIAR 213
I T +R
Sbjct: 1104 IEYTNSR 1110
>gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 769
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ +M
Sbjct: 499 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASM---------------------- 536
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A + C
Sbjct: 537 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRERCL 592
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 593 AAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|390949093|ref|YP_006412852.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425662|gb|AFL72727.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 2046
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 29/143 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED + Q + + +L+ +G V L DG AVE M I+
Sbjct: 1704 LLLAEDNRINQEVALELLRAVGLQVDLADDGARAVE-MARAID----------------- 1745
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLILMD QM +MDG +ATR IRRL ++T PI+A TA A++ +C
Sbjct: 1746 -------YDLILMDVQMPAMDGLEATRAIRRLPGRSDT----PILAMTANAFAEDREQCL 1794
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
+GM+ + KP + L AA+++
Sbjct: 1795 AAGMNDHVGKPVEPDALFAALLK 1817
>gi|383761012|ref|YP_005439994.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381280|dbj|BAL98096.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1606
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 26/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ + MLKKLG V +G A+ A++ +
Sbjct: 1475 LRILLAEDNVVNQKVALTMLKKLGYSADAVANGREALAALSEI----------------- 1517
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDL+LMDC+M MDG +AT IR EA S+PIIA TA +
Sbjct: 1518 --------NYDLVLMDCEMPEMDGFEATLHIRSGEA-GVLNPSVPIIAMTAHAMQGDRER 1568
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C GM+ +++KP Q L+ A+
Sbjct: 1569 CLAVGMNDYVSKPVQLSTLSTAL 1591
>gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
Length = 796
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ MLKKLG V + +G+ V+
Sbjct: 664 VLVVEDSRVNQQVAKMMLKKLGFEVDIADNGKVGVDKFK--------------------- 702
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
HN Y +I MDCQM +DG +AT+ IR E T + IPI+A TA V ++ CF
Sbjct: 703 --HN--EYQMIFMDCQMPVLDGFEATKQIR--AHEEGTSKHIPIVALTANVVQRDKHLCF 756
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
+ GMD FL KP + L + ++ KS EQ
Sbjct: 757 DVGMDEFLPKPVNQGKLREIVASFLSDKSELTGDSEQ 793
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 32/164 (19%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D + +D KV SVLLV+D + RI L+ G T E A EA+ L+ +
Sbjct: 477 DESNIDFNKV----SVLLVDDSQLNMRITSTQLQSFGVSSTCC---ETATEALELVSESV 529
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK-ATRVIRRLEAEAETGQSIP- 169
N+ YDL+L+D M S+DG + A ++I R G++ P
Sbjct: 530 -----------------ENASPYDLVLIDKVMPSIDGFQLARKLIERF------GKACPK 566
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
++ +A +E G ++ +P Q++ L I E +AR
Sbjct: 567 LVMISADPRKQDEMHAQQVGFIAYIARPYQDNQLKWTISEVLAR 610
>gi|443311633|ref|ZP_21041259.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442778362|gb|ELR88629.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 1049
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 71/146 (48%), Gaps = 36/146 (24%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
LS+LL ED V Q++ + +L++LG + KDG + A+ NHQ
Sbjct: 807 LSILLAEDNIVNQKVALHLLQQLGYAADVAKDGLEVLAAL---------NHQ-------- 849
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVI---RRLEAEAETGQSIPIIAFTALVTADN 181
HYD+ILMD QM MDG ATR I R+ IIA TA +
Sbjct: 850 --------HYDVILMDVQMPKMDGLAATRQIIASHRVRPR--------IIAMTANAMQGD 893
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
EC N+GMD +L+KP + LAAA+
Sbjct: 894 REECLNAGMDDYLSKPIRLDQLAAAL 919
>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1103
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 22/159 (13%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q + + MLKKLG +T ++ E + A+ L+ K+HQ
Sbjct: 965 ILLVEDNKVNQVVALSMLKKLG--ITHIEVAENGLLAIELL-----KSHQ---------- 1007
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ ++LILMDCQM MDG + T +IR A E+ Q + I+A TA + + +C
Sbjct: 1008 ---DECQFELILMDCQMPEMDGYRTTELIRD-GAAGESYQGVKILAMTANAMSGDREKCL 1063
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAE 225
N+GM+ +L KP E L+ + + KS S D+ E
Sbjct: 1064 NAGMNDYLTKPISEEPLSEKL-QYWLYKSEYASTDDTEE 1101
>gi|392424042|ref|YP_006465036.1| CheY-like receiver domain-containing protein [Desulfosporosinus
acidiphilus SJ4]
gi|391354005|gb|AFM39704.1| CheY-like receiver domain-containing protein [Desulfosporosinus
acidiphilus SJ4]
Length = 145
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 36/167 (21%)
Query: 53 VTGVDEKKVLEGLSVLLVED----QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
V D + + L +L+VED + V+++I IR G V L ++GE AV+
Sbjct: 9 VKNTDNNRQKKPLKLLIVEDDEINRMVMEKIAIRK----GWEVLLAENGEVAVD------ 58
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
+ +++I+MDCQM +DG KATR IR+LE+ + G I
Sbjct: 59 -------------------IYQKLEFEVIIMDCQMPILDGFKATRAIRQLESNS--GTHI 97
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
PIIA TA + +C N+GMD +L KP + + IVE + KS
Sbjct: 98 PIIALTANTLEGDREKCLNAGMDDYLTKPIETNDF-YTIVEKWSNKS 143
>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 765
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 30/148 (20%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
+ L VL+ ED V +R+ + +LK+LG V++G AAVEA AAG
Sbjct: 635 EALRARRVLVAEDNEVNRRVVVHILKQLGFEPEAVENGRAAVEAF-----AAGT------ 683
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+DL+LMDC+M MDG ATRV+R + +PIIA TA +A
Sbjct: 684 --------------FDLVLMDCRMPEMDGFAATRVLRD-----QFDALVPIIAVTASASA 724
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAI 207
D+ R C +GMD ++KP + L A +
Sbjct: 725 DDSRMCLEAGMDDHMSKPVTKDGLCAML 752
>gi|357633576|ref|ZP_09131454.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
gi|357582130|gb|EHJ47463.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
Length = 1821
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E L +L VED AV Q G RML+KLG V DG AV+
Sbjct: 1684 ERLRILFVEDDAVNQMTGKRMLEKLGHAVVAADDGREAVDCFL----------------- 1726
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+DLI MD QM MDG +ATR IR A +PIIA TA +
Sbjct: 1727 --------RQEFDLIFMDIQMPRMDGVEATRAIRNAGAPGRR-TDLPIIALTAYAMTSDR 1777
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
+ +G+D ++ KP + H+L AI +A ++ + +
Sbjct: 1778 EKFLAAGLDDYVAKPVELHMLEEAIGRAMAGRAVRLA 1814
>gi|257094787|ref|YP_003168428.1| integral membrane sensor hybrid histidine kinase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047311|gb|ACV36499.1| integral membrane sensor hybrid histidine kinase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 709
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED + QR+ +L+KLG LV+DG+ AV+A+T + H
Sbjct: 495 VLVVEDNMINQRVVEALLRKLGLSAALVQDGQQAVDAIT-------RGHAA--------- 538
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
D++LMD M MDGC AT IRR E + + PIIA TA A++ C
Sbjct: 539 --------DIVLMDVNMPVMDGCTATERIRRWEVDNSLPRR-PIIALTANAFAEDRERCL 589
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD +L KP L A +
Sbjct: 590 RAGMDDYLAKPVTFATLQAVL 610
>gi|373487511|ref|ZP_09578178.1| PAS sensor protein [Holophaga foetida DSM 6591]
gi|372008586|gb|EHP09211.1| PAS sensor protein [Holophaga foetida DSM 6591]
Length = 844
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+++LL ED V QR+ + +LKK+G + +G A+EA
Sbjct: 719 VAILLAEDNLVNQRVALAILKKMGLKADVAANGREALEA--------------------- 757
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ YD+ILMDCQM MDG +ATR+IR E E G+ +PI+A TA +
Sbjct: 758 ----NRRKAYDVILMDCQMPEMDGFQATRLIRDGEGE---GRRVPILAMTANAMHGDRER 810
Query: 185 CFNSGMDTFLNKP 197
C +GMD ++ KP
Sbjct: 811 CVEAGMDDYIAKP 823
>gi|156044314|ref|XP_001588713.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154694649|gb|EDN94387.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1086
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 43 SSSSCPVNDD-----VTGVD----EKKVLEGLSVLLVEDQAVLQRIGIRMLK-KLGAGVT 92
SS + P N+D + +D EK + + VL+ ED V Q + +RMLK + V
Sbjct: 873 SSPTPPPNEDNAKTQLAALDRATKEKSGGKKIRVLVAEDNLVNQEVVLRMLKLEDVYDVV 932
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+ KDG+ A + + Q++ G ++LI MD QM ++DG ++T
Sbjct: 933 IAKDGQEAYDMVK------------QSMEEGK--------FFNLIFMDIQMPNLDGLQST 972
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
R+IR E G S PI+A TA N +EC+ SGMD FL+KP + L
Sbjct: 973 RLIR------EMGYSAPIVALTAFAEESNVKECYESGMDHFLSKPIRRPAL 1017
>gi|410620271|ref|ZP_11331153.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola polaris LMG 21857]
gi|410160366|dbj|GAC35291.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola polaris LMG 21857]
Length = 1172
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 24/131 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + Q++ I MLKKL V + ++G+ A+ NL
Sbjct: 1051 ILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAIH----------------------NL 1088
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
E + P +D ILMDCQM MDG +A+R+IR+ ++PIIA TA + C
Sbjct: 1089 EQADKP-FDAILMDCQMPIMDGYQASRIIRK-NMHENYASTLPIIALTANAMKGDREACL 1146
Query: 187 NSGMDTFLNKP 197
+GM+ +L+KP
Sbjct: 1147 AAGMNAYLSKP 1157
>gi|374311111|ref|YP_005057541.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
gi|358753121|gb|AEU36511.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
Length = 931
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L++LL ED A+ Q++ R+L+K G V++ ++G+ A+ A+
Sbjct: 682 LNILLAEDNAINQKLAKRLLEKRGHKVSVAENGKEALAAL-------------------- 721
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DL+LMD QM MDG +ATR +R E E TG P++A TAL ++
Sbjct: 722 -----EKSSFDLVLMDVQMPEMDGLEATRTLR--EREKLTGFHCPVVAMTALAMKGDQER 774
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQD 228
C +GMD +L+KP L A++E S ++E+ D
Sbjct: 775 CLEAGMDGYLSKPISSQAL-DAMLEGYTASIAPLSTQSESESAD 817
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
+V + + K L G+ VL+V+D +RI +L + G T+V GE A
Sbjct: 519 EVDHIVQDKALNGVKVLIVDDNRTNRRILEGLLTRWGMVPTVVSGGEEA----------- 567
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
+ LH + YDL+L D QM +MDG I++ +A+ T I+
Sbjct: 568 -----LAKLHAA----VQSGVPYDLVLTDMQMPNMDGFGLVENIKQ-KADISTA---TIM 614
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI-ARKSH 216
T+ + C G+ +L KP ++ L AI+ + A++ H
Sbjct: 615 MLTSGSKRGDTARCAELGIAAYLLKPVRQVELRQAILRVLQAKEQH 660
>gi|365896098|ref|ZP_09434185.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. STM 3843]
gi|365423107|emb|CCE06727.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. STM 3843]
Length = 746
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 21/135 (15%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EGLS+L+ ED + + +L +LG V + +GEAA+E+ +A
Sbjct: 612 EGLSILVAEDNEINALLMRSLLTRLGHRVVIATNGEAALESWEAAKSAG----------- 660
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+P YDLILMD QM +DG +A + IR EA +ETG+ PI+A TA ++
Sbjct: 661 --------TP-YDLILMDIQMPRLDGMEAAKRIRAQEA-SETGRRTPILALTANTLVEDR 710
Query: 183 RECFNSGMDTFLNKP 197
CF +GMD FL KP
Sbjct: 711 YACFEAGMDGFLIKP 725
>gi|385301162|gb|EIF45374.1| putative response regulator protein [Dekkera bruxellensis AWRI1499]
Length = 972
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L L+ ED V Q + RM+K G VTL DG A++ + A K
Sbjct: 824 LRFLVAEDNLVNQEVVKRMMKLEGYTDVTLACDGFEAIDLVKXSQKAGKK---------- 873
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DLILMD QM +DG ATR+IR + G + PI+A TA NE
Sbjct: 874 ----------FDLILMDVQMPKLDGISATRIIRH-----QLGYTYPIVALTAFADKSNED 918
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAI 207
EC GM FL+KP + +LL I
Sbjct: 919 ECIEVGMSGFLSKPVRRNLLRKII 942
>gi|386827600|ref|ZP_10114707.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386428484|gb|EIJ42312.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1359
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLL+ED V + + + ML++LG VT +G+ AVE +
Sbjct: 930 GTRVLLIEDNDVNRLVAMNMLQELGCQVTEAINGKMAVEKIL------------------ 971
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
N YD +LMD QM MDG +ATR+IR LE Q + IIA TA +
Sbjct: 972 -----DNDYQYDFVLMDVQMPEMDGIEATRLIRELE---NINQHLIIIAMTAGAMKGDAD 1023
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
C +GMD +L KP L A I + IA
Sbjct: 1024 RCLKAGMDDYLAKPITLERLTAVIGKYIA 1052
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V + I ML++LG V V +G+ AV A + Q
Sbjct: 1076 VLLVEDNEVNSLVAITMLEQLGYQVESVVNGKEAV--------AICQEKQ---------- 1117
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YD+ILMD +M MDG +AT+ I RL ET Q+ PIIA TA +
Sbjct: 1118 -------YDIILMDIRMPVMDGVEATKQI-RLHERKETYQT-PIIALTANTQPHEVKHYR 1168
Query: 187 NSGMDTFLNKP 197
GM+ L KP
Sbjct: 1169 EVGMNDCLGKP 1179
>gi|383761056|ref|YP_005440038.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381324|dbj|BAL98140.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1523
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 31/164 (18%)
Query: 57 DEKKVLEGLS-----VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
+ K V+ LS VL+ ED AV Q++ + +L+++GA +V G ++EA+
Sbjct: 1385 ENKPVIPKLSTPNVRVLVAEDNAVNQQVALGILRRMGAHAEVVGSGAESIEAL------- 1437
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
+P YD++LMD QM MDG +ATR IR EA ET + IPII
Sbjct: 1438 -----------------QQAP-YDIVLMDVQMPDMDGLEATRRIRNGEA-GETARDIPII 1478
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
A TA + C +GM+ +++KP + L + + + R S
Sbjct: 1479 AMTAHALQSDRDRCLAAGMNDYVSKPVRPQELHQVLEKWLTRVS 1522
>gi|407920689|gb|EKG13874.1| hypothetical protein MPH_08967 [Macrophomina phaseolina MS6]
Length = 1146
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ ED Q + +RMLK + V++ KDG+ A++ +
Sbjct: 981 LKVLVAEDNKTNQEVVLRMLKLEDVYDVSIAKDGQEALDKVK------------------ 1022
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++E N YDLI MD QM ++DG ++TR+IR + G S PI+A TA N +
Sbjct: 1023 ESMENDNP--YDLIFMDVQMPNLDGIQSTRLIR------QAGYSAPIVALTAYAEESNVK 1074
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC+ SGMD FL KP + L
Sbjct: 1075 ECYESGMDYFLAKPIRRPQL 1094
>gi|336126086|ref|YP_004578042.1| sensory transduction protein kinase [Vibrio anguillarum 775]
gi|335343803|gb|AEH35085.1| Sensory transduction protein kinase [Vibrio anguillarum 775]
Length = 888
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 33/154 (21%)
Query: 52 DVTGVDEKKVLEGL-----SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
D+T V+E + L+ L +L+VED + Q+I L+K G G + +G+ AV+A+T
Sbjct: 746 DLTPVEESQ-LDYLECNHKRILIVEDNLMNQKIASFFLEKAGIGYVVANNGQEAVDAIT- 803
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG- 165
H+ +LMDC M MDG AT+ IR E E E G
Sbjct: 804 -----------------------QGGHFAAVLMDCMMPVMDGLTATKKIR--EWEKEQGV 838
Query: 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ 199
+ +PIIA TA V ++ + CF++GMD +L KP +
Sbjct: 839 EKLPIIALTASVLEEDIKSCFDAGMDAYLPKPYK 872
>gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010]
gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010]
Length = 1177
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
D EG +L+V+D + QR+ +L+ G +T+ +G A++A+
Sbjct: 894 SFDGSTSFEGAHILIVDDNEINQRVAAGILEHFGVEITVASNGANAIKAL---------- 943
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+P +L+LMDCQM MDG +AT IR +A + IPIIA T
Sbjct: 944 --------------QETPFINLVLMDCQMPVMDGFQATEAIRHGDAGTHY-KKIPIIAMT 988
Query: 175 ALVTADNERECFNSGMDTFLNKP 197
A + EC N+GM+ +L KP
Sbjct: 989 AGAMTGDREECLNAGMNDYLTKP 1011
>gi|444377159|ref|ZP_21176394.1| hypothetical protein D515_1068 [Enterovibrio sp. AK16]
gi|443678836|gb|ELT85501.1| hypothetical protein D515_1068 [Enterovibrio sp. AK16]
Length = 1102
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 22 GLQLEFKPVPVTNNIIPQA--EGSSSSCPVNDDVTGVDEKKV-LEGLSVLLVEDQAVLQR 78
G+ EF + N I P A S+ P++ +V V V +GL+VL+ ED V Q
Sbjct: 794 GVVDEFGMPCLINPINPDALINALSADSPIDVEVPEVKADAVRFDGLNVLIAEDHLVNQD 853
Query: 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138
+ + +L LG TL +G A LE H + +DLIL
Sbjct: 854 LMVLVLNSLGCQSTLADNGLEA-------------------------LEKHRANPFDLIL 888
Query: 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP- 197
MDCQM MDG +ATR IR + +++PIIA TA + + + C +SGM+ L KP
Sbjct: 889 MDCQMPEMDGFEATRNIRDFD------ENVPIIAVTANALSGDAQRCLDSGMNAHLAKPF 942
Query: 198 AQEHLLAAAIVETIARKSHKFS 219
+E L+ ++ K+ S
Sbjct: 943 TKEQLVNLMLLYVPGEKAFPVS 964
>gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
Length = 880
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L++ G + +G+ AV+ +T
Sbjct: 759 ILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVIT--------------------- 797
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG ATRVIR E + +T +PIIA TA V ++ + CF
Sbjct: 798 ---QGAQFDAILMDCMMPVMDGITATRVIREWETDQQTP-PLPIIALTASVLEEDIKNCF 853
Query: 187 NSGMDTFLNKPAQEHLL 203
+GM+ +L KP + H L
Sbjct: 854 EAGMNAYLPKPYKSHQL 870
>gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1162
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 26/148 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VLLVED AV Q RML+K G VTLV DG+ A++A LHH
Sbjct: 1033 GLHVLLVEDDAVNQLAVRRMLEKSGMTVTLVTDGQQALDA----------------LHHA 1076
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ +D ++MD QM MDG ATR IR A A +IP++A TA +
Sbjct: 1077 A---------FDCVVMDVQMPVMDGLTATRAIRTDPAFASRA-AIPVVAMTAHAMVGDRE 1126
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+GMD +++KP + L AI+ +
Sbjct: 1127 SFMEAGMDDYVSKPVEMSGLRQAILRAM 1154
>gi|218676127|ref|YP_002394946.1| sensor protein [Vibrio splendidus LGP32]
gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32]
Length = 537
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L++ G + +G+ AV+ +T
Sbjct: 416 ILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVIT--------------------- 454
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG ATRVIR E + +T +PIIA TA V ++ + CF
Sbjct: 455 ---QGAQFDAILMDCMMPVMDGITATRVIREWETDQQT-PPLPIIALTASVLEEDIKNCF 510
Query: 187 NSGMDTFLNKPAQEHLL 203
+GM+ +L KP + H L
Sbjct: 511 EAGMNAYLPKPYKSHQL 527
>gi|408373430|ref|ZP_11171126.1| sensor histidine kinase/response regulator [Alcanivorax
hongdengensis A-11-3]
gi|407766598|gb|EKF75039.1| sensor histidine kinase/response regulator [Alcanivorax
hongdengensis A-11-3]
Length = 930
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 27/148 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+ L+V++ ED AV Q + +LK LG TLV +G+ A+E
Sbjct: 798 LQRLNVIVAEDNAVNQLVVDSILKSLGVHATLVDNGQQALEKF----------------- 840
Query: 122 HGSNLETHNSPHY-DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
SP Y D+I MDC+M +DG ATR IR L EAETG+ II +A T D
Sbjct: 841 -------RGSPGYWDMIFMDCEMPQLDGYDATRAIREL--EAETGRHCWIIGLSAHATGD 891
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIV 208
++ ++GMD +L KP + + A++
Sbjct: 892 YVQKARDAGMDDYLAKPVTQKQVQDALL 919
>gi|407695039|ref|YP_006819827.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain-containing protein [Alcanivorax dieselolei B5]
gi|407252377|gb|AFT69484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax dieselolei B5]
Length = 628
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 66/138 (47%), Gaps = 28/138 (20%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LLVED V + + RML+ LG V DGE A L
Sbjct: 505 LLVEDNLVNRMVAARMLENLGLEVVSCGDGETA-------------------------LN 539
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECF 186
T ++D++LMD QM MDG +ATR IRR E A G+S +PIIA TA + C
Sbjct: 540 TIQGENFDVVLMDVQMPVMDGLEATRAIRRWERAA--GRSPVPIIALTANALGEERERCL 597
Query: 187 NSGMDTFLNKPAQEHLLA 204
SGMD L KP + LLA
Sbjct: 598 ASGMDDHLAKPYRRQLLA 615
>gi|238025377|ref|YP_002909609.1| multi-sensor Hybrid histidine Kinase [Burkholderia glumae BGR1]
gi|237880042|gb|ACR32374.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
Length = 1179
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 26/157 (16%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
DE + +LL ED + +G+ ML +LG + DGE AV
Sbjct: 907 DEAQPAGAPLILLAEDNPTNRAVGLAMLSRLGLQARVASDGEQAVR-------------- 952
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
L+ G ++DL+LMDC M MDG AT IR +E +A +PI+A TA
Sbjct: 953 ---LYEGG--------YFDLVLMDCHMPRMDGLAATAAIRSME-QARRAARVPIVAITAD 1000
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+T+ N EC ++G+D + KP AAAI + + R
Sbjct: 1001 LTSSNLVECRSAGIDEVVAKPFTFAEFAAAIRKYLPR 1037
>gi|383761309|ref|YP_005440291.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381577|dbj|BAL98393.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1100
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 31/151 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ +RML+K G + +G A+EA+
Sbjct: 979 LRILLAEDNLVNQKVVLRMLEKFGCSADVASNGLEALEAL-------------------- 1018
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
H P YDL+LMD M MDG +AT+ IRR A + I+A TA +++
Sbjct: 1019 ----HRQP-YDLVLMDMHMPEMDGLEATKQIRRSLASERQPR---IVALTAAALREDQEA 1070
Query: 185 CFNSGMDTFLNKPAQ-EHLLAAAIVETIARK 214
C +GMD FL KP + EHL A+I+ T R+
Sbjct: 1071 CLAAGMDAFLTKPVRPEHL--ASILRTTHRR 1099
>gi|407929232|gb|EKG22067.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 1495
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 28/173 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED V Q+I ++ +KK G V V +G+ AVE LM GK
Sbjct: 1106 VNVLVVEDNQVNQQIALKTIKKQGFSVNAVWNGKEAVEY--LMEAKEGK----------- 1152
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG---QSIPIIAFTALVTADN 181
+ P D+ILMD QM MDG KAT+ IR EA ++IPI+A TA +
Sbjct: 1153 ----RDKP--DIILMDVQMPIMDGYKATQTIR-TEAPFRDSPHIRNIPIVAMTASAIQGD 1205
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIA---RKSHKFSCDE--QAEAQDE 229
+ +C +GMD +L KP + LL +V+ RKS K + E Q ++DE
Sbjct: 1206 KEKCQEAGMDDYLAKPVRGKLLEKMLVKWAVASKRKSEKNAKTEAAQGSSRDE 1258
>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1390
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 41/181 (22%)
Query: 45 SSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104
S+ PV + + G E++ L L +LLVED V Q + +R+L+K G V++ +G+ A++++
Sbjct: 1128 SNQPVAECIAG--ERRRL--LKILLVEDNPVNQTLALRLLEKRGCTVSIASNGKEALKSL 1183
Query: 105 TLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
+ +DLILMD +M M+G + T+ IR AE +
Sbjct: 1184 -------------------------EAESFDLILMDIEMPEMNGFETTQAIR--NAEQSS 1216
Query: 165 GQSIPIIAFTA-LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
G+ IPIIA TA +T D ER C ++GMD +++KP L I KF+ D
Sbjct: 1217 GEHIPIIAMTAHAMTGDRER-CLDAGMDGYVSKPVDSRELFFTI--------DKFTQDRS 1267
Query: 224 A 224
A
Sbjct: 1268 A 1268
>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1313
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 32/192 (16%)
Query: 27 FKPVPVTN--NIIPQAEGSSSSCPVNDDVTGVDEKKVLEG--LSVLLVEDQAVLQRIGIR 82
FKP T+ +++ ++ + D TG +++ E L +LL ED V Q++ +R
Sbjct: 1141 FKPFKTTSFLHVVSALLNPATHTVIATDTTGPFTRRLAEEFPLDILLAEDNTVNQKVALR 1200
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
L++LG V +G+ AV + + HY L+LMD Q
Sbjct: 1201 FLERLGYRADAVSNGQEAVTTLA-------------------------ARHYHLVLMDLQ 1235
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +A+R IR+ + + I+A TA + C +GMD +++KP + H
Sbjct: 1236 MPEMDGLEASRQIRK---KVPASRQPKIVALTANAMQGDRERCLEAGMDDYISKPVKLHE 1292
Query: 203 LAAAIVETIARK 214
+ AAI A +
Sbjct: 1293 IEAAIRRLFASR 1304
>gi|402218208|gb|EJT98286.1| hypothetical protein DACRYDRAFT_118989 [Dacryopinax sp. DJM-731 SS1]
Length = 3162
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LL ED V Q++ +++L+KLG + +V +G+ A+EA+
Sbjct: 3021 FDILLAEDNVVNQKVAVKILEKLGHRLEVVDNGKKALEAV-------------------- 3060
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ + YDL+LMD M M G +AT +IRR E E + +PI+A TA +
Sbjct: 3061 KIRAKSGRQYDLVLMDVSMPFMGGIEATEIIRRWEHETGVAR-VPIVALTAHAMLGDRER 3119
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GMD +++KP + L +++ + +
Sbjct: 3120 CIQAGMDEYVSKPLKRSDLISSMTKAV 3146
>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales
bacterium HTCC2150]
gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacteraceae
bacterium HTCC2150]
Length = 767
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 38/188 (20%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
+P N+ P+A+ ++ S P+N E ++ L VL+ ED Q + MLKK
Sbjct: 614 LPSVENL-PKAQDNTKSKPLN-------ENSSIDKLRVLIAEDNRTNQIVIKSMLKKEQM 665
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
+ +G+ AVEA DLILMD M MDG
Sbjct: 666 TLKFANNGKLAVEAF-------------------------EGEKPDLILMDISMPEMDGL 700
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
ATR IR LE E PIIA TA V A + C N+GMD +L KP + A+++
Sbjct: 701 SATRAIRNLEGSVEKDHC-PIIALTANVMAGDRETCLNAGMDDYLAKPVNK----TALLK 755
Query: 210 TIARKSHK 217
IA+ S++
Sbjct: 756 LIAQWSNR 763
>gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
sp. DG881]
gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
sp. DG881]
Length = 927
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 23/136 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L V++ ED AV Q + +LK LG TLV DG AVE + +NH
Sbjct: 800 LKVIVAEDNAVNQLVIDSILKSLGIHATLVSDGAQAVEQV--------RNH--------- 842
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
++D+I MDC+M MDG +ATR IR LE ET IIA +A T D ++
Sbjct: 843 ------PDYWDIIFMDCEMPVMDGYQATREIRALETAQETPPHCWIIALSAHATGDYVQK 896
Query: 185 CFNSGMDTFLNKPAQE 200
++G+D +L+KP +
Sbjct: 897 ARDAGVDDYLSKPVSQ 912
>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1011
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 34/165 (20%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EGL +++ ED V QR+ +L K+G T+V++G+ +A+TL
Sbjct: 764 EGLDIMVAEDSPVNQRVISHVLHKMGHSFTIVENGQ---DAVTLW--------------- 805
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+D ILMD QM MDG +ATR IR L+A E +PIIA TA +
Sbjct: 806 -------ERRKFDAILMDVQMPVMDGIEATRRIRELDAHCEN--PVPIIALTAHAMQSDR 856
Query: 183 RECFNSGMDTFLNKPAQEHLLA---AAIVETIARK----SHKFSC 220
C ++GM+ +L+KP +LA A I K S++FSC
Sbjct: 857 ERCLDAGMNDYLSKPLDPGMLAEKLAKWASPIRNKQEETSNEFSC 901
>gi|242780696|ref|XP_002479650.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218719797|gb|EED19216.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1118
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED AV Q + +RMLK + VT+ KDG+ A + + ++ K
Sbjct: 987 IRVLVAEDNAVNQEVVLRMLKLEDIYDVTVAKDGQEAYDTVKAAMSEGNK---------- 1036
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DLI MD QM ++DG ++TR+IR++ G S PI+A +A N +
Sbjct: 1037 ----------FDLIFMDIQMPNLDGLESTRLIRQM------GYSAPIVALSAFAEESNIK 1080
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
+C SGMD FL+KP + L
Sbjct: 1081 DCMESGMDMFLSKPIRRPAL 1100
>gi|328873792|gb|EGG22158.1| hypothetical protein DFA_04276 [Dictyostelium fasciculatum]
Length = 330
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 27/145 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I +R L KLG + + DG ++ + N
Sbjct: 167 ILVAEDNLINQKIIVRQLDKLGYDMIVGSDGNKVLDIL--------------------NS 206
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
E +N + LILMDCQM MDG + +R+IR+LE + GQ IPIIA TA TA E +
Sbjct: 207 EDYN---FSLILMDCQMPEMDGFECSRIIRQLEPK---GQRIPIIAMTANSTA-AEDQSK 259
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
SGMD +L KP + +L+ + + I
Sbjct: 260 ASGMDDYLPKPVKIDMLSQMLQKWI 284
>gi|357118508|ref|XP_003560996.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 1017
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 20/181 (11%)
Query: 39 QAEGSSSS----CPVNDDVTGVD-EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTL 93
QA ++SS PV VD E+K LEG+ VLL ED +LQ I ++L LGA V +
Sbjct: 847 QASAAASSEIEELPVEPPRPKVDAERKPLEGMRVLLAEDSRMLQAIQKKVLNLLGATVEI 906
Query: 94 VKDGEAAVEAM-TLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+DG A+ + + A G + Q GS + YD++ MDC M M+G +AT
Sbjct: 907 AEDGSVALAMFKSALEEAIGASSQ------GS--AGALALPYDVVFMDCLMPEMNGYEAT 958
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
R IR E E+ G PIIA TA + +E +GMD L KP +L IVE ++
Sbjct: 959 RRIR--EEESRHGIRTPIIALTAHSLEEGLQETIQAGMDLHLTKP----ILKENIVEAVS 1012
Query: 213 R 213
+
Sbjct: 1013 Q 1013
>gi|77362202|ref|YP_341776.1| two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis TAC125]
gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis TAC125]
Length = 1585
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 32/190 (16%)
Query: 22 GLQLEFKPVPVTN-------NIIPQAEGSSSSCPVNDD-VTGVDEKKVLEGLSVLLVEDQ 73
G Q F P PVT ++I +E + V ++ + + K +E +LLVED
Sbjct: 1412 GFQAYF-PKPVTTADLISALSVITNSEQHEALPLVTSGYISSLRKAKTIEPAKILLVEDN 1470
Query: 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133
+ Q++ MLKKL L ++G+ A+E L H + +
Sbjct: 1471 PINQQVSTLMLKKLNCETVLAENGQRALE----------------------ELAKHEAGY 1508
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+ ++LMDCQM MDG AT IR+ EA E ++I IIA TA ++ C GM+ +
Sbjct: 1509 FQVVLMDCQMPVMDGYDATIAIRKGEA-GEQHKAIKIIALTANAMDSDKERCIAVGMNDY 1567
Query: 194 LNKPAQEHLL 203
L+KP + +L
Sbjct: 1568 LSKPIELDIL 1577
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K + GLS+L+V+D + + LK GA V L + E A+ L+ KN+Q
Sbjct: 1305 KANINGLSILVVDDNETNRLVISEQLKHWGANVELANNAEHAL----LICENRVKNNQ-- 1358
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
YD+ ++D QM MDG + V L+A A+ + +P++ T++
Sbjct: 1359 -------------GMYDIAVLDMQMPGMDGIELCEV---LKAHADY-KHMPLVMMTSIAG 1401
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + ++G + KP L +A+
Sbjct: 1402 LEGAQRYSDAGFQAYFPKPVTTADLISAL 1430
>gi|153877261|ref|ZP_02004156.1| Response regulator receiver protein [Beggiatoa sp. PS]
gi|152066275|gb|EDN65844.1| Response regulator receiver protein [Beggiatoa sp. PS]
Length = 255
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 27/133 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++LLVED Q + ML+++ V + DG+ A IN KNH
Sbjct: 134 FNILLVEDNETNQAVEQMMLEEMDYQVDIANDGQQA-------INMIAKNH--------- 177
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDL+LMD QM +DGC+AT+ IR + E T +PIIA TA T ++ +
Sbjct: 178 ---------YDLVLMDVQMPVIDGCQATKHIR--QQEQHTNTHLPIIAITASPTNEDVEK 226
Query: 185 CFNSGMDTFLNKP 197
C +GMD FL KP
Sbjct: 227 CIAAGMDDFLAKP 239
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
+LVED + Q + M + L + + DG+ AV+ MT
Sbjct: 1 MLVEDDKINQMVAQMMFETLDCQIEMANDGQEAVD-MTA--------------------- 38
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
+ HYDLILMD M +DG AT+ IR + E ET + IIA TA + + + C
Sbjct: 39 ---NQHYDLILMDVHMPVLDGYAATQAIR--QREQETKNHLSIIAMTADLISGDLDACLE 93
Query: 188 SGMDTFLNKP 197
GMD + KP
Sbjct: 94 IGMDDAVAKP 103
>gi|258514981|ref|YP_003191203.1| response regulator receiver and Hpt phospho transfer protein
[Desulfotomaculum acetoxidans DSM 771]
gi|257778686|gb|ACV62580.1| response regulator receiver and Hpt phospho transfer protein
[Desulfotomaculum acetoxidans DSM 771]
Length = 285
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 27/146 (18%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D + +D K+ G +LL ED + Q++ +++LK G +V+ G +EA++ +
Sbjct: 10 DFSEIDTDKIASGGLILLAEDNIINQKVVVQLLKNFGLIAHIVESGYGVLEAISRI---- 65
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
YDLILMD QM MDG +ATR+IR E+EA + + IPII
Sbjct: 66 ---------------------KYDLILMDIQMPEMDGYEATRLIR--ESEAGSDRHIPII 102
Query: 172 AFTALVTADNERECFNSGMDTFLNKP 197
A TA + ++G+D +++KP
Sbjct: 103 AMTAHRMQGDRMNYLDAGIDDYISKP 128
>gi|429770733|ref|ZP_19302785.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, partial
[Brevundimonas diminuta 470-4]
gi|429183824|gb|EKY24864.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, partial
[Brevundimonas diminuta 470-4]
Length = 379
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 79/167 (47%), Gaps = 33/167 (19%)
Query: 46 SCPVNDDVTGVDE-----KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
+ +DVT +E K L G VL+ +D A + + +L+ LG + V DG A
Sbjct: 223 AAATEEDVTAREETDRARKDALRG-RVLMADDAAANRELVSAILRNLGLEIDTVADGAEA 281
Query: 101 VEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA 160
V A H G YDL+LMD M MDG ATR IRR++A
Sbjct: 282 VHAA----------------HSG---------LYDLVLMDVHMPVMDGLTATREIRRMQA 316
Query: 161 EAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ E + IPI+A TA V AD C +GMD L KP Q LAAA+
Sbjct: 317 QGE--RRIPILALTANVQADQVTRCLEAGMDGHLAKPIQITELAAAL 361
>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
Length = 993
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 28/136 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LLVED V Q + + ML+K G +V++G A+ A+ +
Sbjct: 730 FRILLVEDSEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKV----------------- 772
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNER 183
HYDL+LMDCQM MDG +ATR IRR + +PI+A TA +T D ER
Sbjct: 773 --------HYDLVLMDCQMPEMDGYEATRCIRRGQGNV-MNPEVPIVAITANAMTGDRER 823
Query: 184 ECFNSGMDTFLNKPAQ 199
C +GMD ++ KP +
Sbjct: 824 -CLQAGMDDYMAKPVR 838
>gi|254585433|ref|XP_002498284.1| ZYRO0G06644p [Zygosaccharomyces rouxii]
gi|238941178|emb|CAR29351.1| ZYRO0G06644p [Zygosaccharomyces rouxii]
Length = 1166
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 34/165 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+L+ ED V Q + RML G + LV DG+ A++ + ++
Sbjct: 984 ILVAEDNDVNQEVIKRMLNLEGVHNIELVCDGQEALDKVKQLV----------------- 1026
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
N HY+LI MD QM MDG +T++IRR + + PI+A TA N REC
Sbjct: 1027 ---ENGEHYNLIFMDVQMPKMDGLLSTKMIRR-----DLNYTHPIVALTAFADDSNIREC 1078
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQDEK 230
++GMD FL KP + L I E F D+Q + QD++
Sbjct: 1079 LDAGMDGFLAKPIKRAQLRKIIEE--------FCPDKQPQEQDKE 1115
>gi|359437210|ref|ZP_09227280.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas sp. BSi20311]
gi|359446653|ref|ZP_09236304.1| hypothetical protein P20439_2642 [Pseudoalteromonas sp. BSi20439]
gi|358028034|dbj|GAA63529.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas sp. BSi20311]
gi|358039459|dbj|GAA72553.1| hypothetical protein P20439_2642 [Pseudoalteromonas sp. BSi20439]
Length = 918
Score = 78.2 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 32/159 (20%)
Query: 44 SSSCPVNDDVTGVDEKKV-----LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
S S P + D KK L G +LLVED A+ +++ +ML+ A V + +DG
Sbjct: 772 SISAPESADAPSTLPKKAALQPNLLGKHILLVEDNAINRQVISKMLEPTKAVVVMAEDGI 831
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
A++ + +DLILMDCQM +MDG + TR IR +
Sbjct: 832 KALDVL-------------------------KEQSFDLILMDCQMPNMDGYECTRTIRVM 866
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
E +TG +PI+A TA ++++ C +GMD F+ KP
Sbjct: 867 --ELKTGWRVPIVAITANAYEEDKQRCLIAGMDDFIAKP 903
>gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM
3645]
gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM
3645]
Length = 618
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 91/196 (46%), Gaps = 34/196 (17%)
Query: 19 LEHGLQLEFKPVP--VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVL 76
L HG F ++N I + PV+ V+ V KK +LLVED
Sbjct: 435 LGHGSYFHFTIATGDLSNVKISNCADDFNWVPVS--VSSVPAKKFALCGRILLVEDGPDN 492
Query: 77 QRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136
QR+ +L+K GA V + DG V+ MTL +N ++ +DL
Sbjct: 493 QRLLRLILEKAGAEVAIANDGRDGVD-MTL----TARNQEVP---------------FDL 532
Query: 137 ILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196
ILMD QM MDG +ATR +RR PIIA TA +D+ + C ++G+D +L K
Sbjct: 533 ILMDMQMPIMDGYQATRTLRR------EAIRTPIIALTAHAMSDDRQRCMDAGVDDYLTK 586
Query: 197 PAQEHLLAAAIVETIA 212
P LL +ETIA
Sbjct: 587 PIDRRLL----LETIA 598
>gi|430741730|ref|YP_007200859.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430013450|gb|AGA25164.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 919
Score = 78.2 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
++ SS D +G+ L VL+ ED V Q + IR+L KLG +V DG
Sbjct: 617 SDTPSSKAAAALDSSGIASSPAPRRLRVLVAEDNPVNQTLAIRLLAKLGHDSVVVGDGRQ 676
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
A + L G +DL+LMD QM ++DG +AT ++R E
Sbjct: 677 A----------------LNRLEKGG---------FDLVLMDLQMPNLDGLEATSLLR--E 709
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
EA G +P+IA TA + C +G D +++KP + LA AI E + +
Sbjct: 710 HEAREGGHMPVIAMTAHAMRGDRERCLAAGCDGYVSKPMRSRDLAGAIEEVMTQ 763
>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
Length = 831
Score = 78.2 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 73/148 (49%), Gaps = 30/148 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LLVED V Q + RML+++G VT+V +G A+EA
Sbjct: 570 LDILLVEDNPVNQTVASRMLERVGHKVTVVNNGAEAIEAF-------------------- 609
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG-----QSIPIIAFTALVTA 179
++ H+DL+LMD QM M G +AT+ IR EA +++PI+A TA
Sbjct: 610 -----DAGHFDLVLMDLQMPVMGGIEATQAIRAREARRSWAVQGGWRAVPIVAMTAHAME 664
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ C +GMD ++ KP + L AAI
Sbjct: 665 SDRARCLEAGMDDYVAKPIRAGDLLAAI 692
>gi|406892922|gb|EKD38127.1| hypothetical protein ACD_75C00853G0002 [uncultured bacterium]
Length = 262
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 30/155 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LLVED+ + + + I +L++ G VT DG A
Sbjct: 137 LRILLVEDEYINRTLAITVLEREGWKVTAACDGREA------------------------ 172
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
L ++ +DLILMD QM +DG + TR IRR E TG+ +PIIA TA + +
Sbjct: 173 -LGVYDENAFDLILMDIQMPELDGYETTRTIRR--NEDRTGRHVPIIAMTAYAVKGDREK 229
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
C +GMD +++KP + L A I + H++S
Sbjct: 230 CLAAGMDGYISKPVRPDQLRAEIERVL---QHQYS 261
>gi|392554223|ref|ZP_10301360.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas undina NCIMB 2128]
Length = 918
Score = 78.2 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 32/159 (20%)
Query: 44 SSSCPVNDDVTGVDEKKV-----LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
S S P + D KK L G +LLVED A+ +++ +ML+ A V + +DG
Sbjct: 772 SISAPESADAPSTLPKKAALQPNLLGKHILLVEDNAINRQVISKMLEPTKAVVVMAEDGI 831
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
A++ + +DLILMDCQM +MDG + TR IR +
Sbjct: 832 KALDVL-------------------------KEQSFDLILMDCQMPNMDGYECTRTIRVM 866
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
E +TG +PI+A TA ++++ C +GMD F+ KP
Sbjct: 867 --ELKTGWRVPIVAITANAYEEDKQRCLIAGMDDFIAKP 903
>gi|424031780|ref|ZP_17771214.1| response regulator [Vibrio cholerae HENC-01]
gi|408877501|gb|EKM16567.1| response regulator [Vibrio cholerae HENC-01]
Length = 1053
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 25/146 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G AVE KN
Sbjct: 772 ILVVDDNTVNQKIAGLHVAKAGFTFDLAANGLEAVEMFK-------KNQ----------- 813
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT+ IR+LE E IPIIA TA V D+ ++CF
Sbjct: 814 -------YSLILMDCMMPVMDGFEATQKIRQLEHEQNRSVKIPIIALTASVVDDDIQKCF 866
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIA 212
+ GMD ++ KP + ++L + + A
Sbjct: 867 DVGMDDYVPKPFKANILKEKLAKATA 892
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 46/199 (23%)
Query: 26 EFKPVPVTNNIIPQAEGSSSSCP-VNDDV------TGVDEK------------KVLEGLS 66
++ P P NI+ + +++ P V D+V TG+ K L S
Sbjct: 872 DYVPKPFKANILKEKLAKATAVPIVEDNVSSAFSGTGISAKSKPQDKPEPTSINTLPSRS 931
Query: 67 --VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LLVED V Q++ +L K G + ++G+ AV+
Sbjct: 932 ERILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIAVDMF-------------------- 971
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ +
Sbjct: 972 ----QQDNGFDIILMDCMMPVMDGFEATKEIRAYEKNSGLPKT-PIIALTASVVDDDIQR 1026
Query: 185 CFNSGMDTFLNKPAQEHLL 203
C++SGMD ++ KP ++ L
Sbjct: 1027 CYDSGMDAYVPKPVRKEKL 1045
>gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
Length = 839
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L++ G + +G+ AV+ +T
Sbjct: 718 ILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVIT--------------------- 756
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D +LMDC M MDG TR IR+ E E +T +PIIA TA V ++ ++CF
Sbjct: 757 ---QGAQFDAVLMDCMMPVMDGITVTRAIRQWENEQQTT-PLPIIALTASVLEEDIKDCF 812
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ +L KP + H L
Sbjct: 813 DAGMNAYLPKPYKSHQL 829
>gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|417956534|ref|ZP_12599498.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
gi|342809374|gb|EGU44493.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891
= ATCC 33934]
Length = 639
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 34/183 (18%)
Query: 31 PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAG 90
PV N+I E S D++ ++E+ V + VL+VED V Q+I ML L
Sbjct: 475 PVKRNLISFTEKYSQ-----DEIKLINEQ-VDSDICVLVVEDTRVNQQIISVMLNLLNVN 528
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
T+V +G+ A++ + +D ILMDC M MDG +
Sbjct: 529 TTIVNNGQEAIDIC-------------------------QTYQFDAILMDCHMPIMDGYE 563
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210
ATR++R + + +PIIA TA V +++ C+ SGM+ FL KP + + +A+++
Sbjct: 564 ATRMLRSYD---DWRCQVPIIAVTANVMKEHKLLCYESGMNDFLTKPVEPKKIRSALIKH 620
Query: 211 IAR 213
I R
Sbjct: 621 IPR 623
>gi|410644220|ref|ZP_11354702.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica NO2]
gi|410136068|dbj|GAC03101.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica NO2]
Length = 1172
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 24/138 (17%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K + ++LLVED + Q++ I MLKKL V + ++G+ A+ H +++
Sbjct: 1044 KYFQTPNILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAI-------------HTLED 1090
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
G +DLILMDCQM MDG +A+R IR + ++PIIA TA
Sbjct: 1091 ADKG----------FDLILMDCQMPIMDGYEASRKIRN-NLHSNYASTLPIIALTANAMK 1139
Query: 180 DNERECFNSGMDTFLNKP 197
+ C ++GM+ +L+KP
Sbjct: 1140 GDREACLSAGMNAYLSKP 1157
>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
Length = 902
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 28/177 (15%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
+ DE+ + L++LL ED V Q++ MLKK +T+ ++G EA+ L
Sbjct: 654 SNADERVLGRKLNILLAEDDKVNQQVIAGMLKKEQCSLTIAENG---FEAIKLF------ 704
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAF 173
+DLILMD QM MDG +AT+ IR++ E T + IPIIA
Sbjct: 705 ----------------EENEFDLILMDVQMPEMDGIEATKRIRKM--EEGTFRHIPIIAV 746
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQDEK 230
TA ++ + +GMD +++KP + AAI + K + S D Q E +DEK
Sbjct: 747 TAFAFENDREKILEAGMDDYISKPFSFDDIYAAI-NRVLYKDEQSSDDMQKEKEDEK 802
>gi|388569253|ref|ZP_10155656.1| multi-sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
gi|388263494|gb|EIK89081.1| multi-sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
Length = 2097
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VL+V+D + Q I ML++ GA V L +G EA+ L+
Sbjct: 1754 LAGTRVLVVDDSDINQEIAQHMLQREGAHVFLASNGR---EALALL-------------- 1796
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ PH+D++LMD QM MDG +ATR +R + +P++A TA A+
Sbjct: 1797 -------RDGPHFDVVLMDVQMPEMDGLQATRELRADDNLCH----LPVVALTAGALAEE 1845
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
R ++GMD FL KP L V+ +AR+
Sbjct: 1846 RRRALDAGMDHFLTKPIDPDQLLEVTVQALARR 1878
>gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
Length = 896
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + Q + L++LG V + ++G+ A+ S L
Sbjct: 772 VLLVEDNPINQLVAQDTLEELGLIVDIAQNGQEAI----------------------SRL 809
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ H S Y LI MDCQM MDG +A+R IR EA E ++ PIIA TA ++ C
Sbjct: 810 QEHRSKGYSLIFMDCQMPVMDGYEASRAIRNGEAGDEHRKT-PIIALTANAMKEDRDHCI 868
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD F++KP +L I
Sbjct: 869 EAGMDDFISKPMDIEVLKTTI 889
>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
ATCC 27405]
gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|385778763|ref|YP_005687928.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|419722127|ref|ZP_14249276.1| PAS sensor protein [Clostridium thermocellum AD2]
gi|419724874|ref|ZP_14251931.1| PAS sensor protein [Clostridium thermocellum YS]
gi|125713549|gb|ABN52041.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum ATCC
27405]
gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|380771763|gb|EIC05626.1| PAS sensor protein [Clostridium thermocellum YS]
gi|380781881|gb|EIC11530.1| PAS sensor protein [Clostridium thermocellum AD2]
Length = 902
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 28/177 (15%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
+ DE+ + L++LL ED V Q++ MLKK +T+ ++G EA+ L
Sbjct: 654 SNADERVLGRKLNILLAEDDKVNQQVIAGMLKKEQCSLTIAENG---FEAIKLF------ 704
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAF 173
+DLILMD QM MDG +AT+ IR++ E T + IPIIA
Sbjct: 705 ----------------EENEFDLILMDVQMPEMDGIEATKRIRKM--EEGTFRHIPIIAV 746
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQDEK 230
TA ++ + +GMD +++KP + AAI + K + S D Q E +DEK
Sbjct: 747 TAFAFENDREKILEAGMDDYISKPFSFDDIYAAI-NRVLYKDEQSSDDMQKEKEDEK 802
>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. 4H-3-7+YE-5]
gi|410639810|ref|ZP_11350355.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola chathamensis
S18K6]
gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. 4H-3-7+YE-5]
gi|410140691|dbj|GAC08542.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola chathamensis
S18K6]
Length = 1172
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 24/138 (17%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K + ++LLVED + Q++ I MLKKL V + ++G+ A+ H +++
Sbjct: 1044 KYFQTPNILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAI-------------HTLED 1090
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
G +DLILMDCQM MDG +A+R IR + ++PIIA TA
Sbjct: 1091 ADKG----------FDLILMDCQMPIMDGYEASRKIRN-NLHSNYASTLPIIALTANAMK 1139
Query: 180 DNERECFNSGMDTFLNKP 197
+ C ++GM+ +L+KP
Sbjct: 1140 GDREACLSAGMNAYLSKP 1157
>gi|328861215|gb|EGG10319.1| hypothetical protein MELLADRAFT_115560 [Melampsora larici-populina
98AG31]
Length = 1004
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 26/142 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLV+D + +G R+L+K+G V + +G AV Q H
Sbjct: 883 ILLVDDNGMNVELGRRVLEKIGYEVQVAYNGLEAV----------------QKACHSDC- 925
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG-QSIPIIAFTALVTADNEREC 185
DL+LMDCQM +DG +ATR+IR E +A+ G +PIIA TA V+ ++ C
Sbjct: 926 --------DLVLMDCQMPGVDGPEATRMIRDYETKAKEGVNRLPIIALTANVSESDQTTC 977
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
SGMD FL KP Q +L A +
Sbjct: 978 MESGMDGFLPKPLQVTVLKATL 999
>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 833
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 30/148 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+VED V Q + RML+ +G VT+ +GE A+EA+
Sbjct: 571 LEVLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAI-------------------- 610
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE-----AETGQSIPIIAFTALVTA 179
++ H+D++LMD QM M G +AT+ IR EA A + +PIIA TA
Sbjct: 611 -----DNRHFDVVLMDVQMPVMGGIEATQAIRAREARRSWVLAGDWKPVPIIAMTAHAME 665
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ C +GMD ++ KP + L AAI
Sbjct: 666 GDRERCLQAGMDDYVAKPVRPEALFAAI 693
>gi|383767512|ref|YP_005446494.1| putative response regulator receiver protein [Phycisphaera
mikurensis NBRC 102666]
gi|381387781|dbj|BAM04597.1| putative response regulator receiver protein [Phycisphaera
mikurensis NBRC 102666]
Length = 428
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 67/133 (50%), Gaps = 24/133 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VLL ED V Q + +L+ G V +V DG AVEA+T + HG
Sbjct: 147 NVLLAEDNPVNQAVACELLRDAGYRVRVVGDGLLAVEALT------------RPGGHG-- 192
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNERE 184
+D++LMDCQM +DG ATR R EA G +PI+A TA V D ER
Sbjct: 193 --------FDVVLMDCQMPELDGFGATRRFRDHEAARTCGGRVPIVALTANAVRGDRER- 243
Query: 185 CFNSGMDTFLNKP 197
C +GMD + +KP
Sbjct: 244 CLEAGMDGYASKP 256
>gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
Length = 539
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 34/159 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VL+ +D A + + +L+ LG V V DG AV A +H G
Sbjct: 409 GGRVLMADDAAANRELVSAILRNLGLEVEAVADGAEAVHA----------------VHSG 452
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YDL+LMD M MDG +ATR IRR++A TG+ PI+A TA V ++
Sbjct: 453 A---------YDLVLMDVHMPVMDGLQATREIRRMQAG--TGRRTPILALTANVQSEQVV 501
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDE 222
C +GMD L KP Q LAAA+ + SCD+
Sbjct: 502 RCLEAGMDGHLAKPIQIAELAAAL-------TRWLSCDQ 533
>gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora
owczarzaki ATCC 30864]
Length = 1474
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q++ ML+K G + +G+ AV+ +I AA + + S
Sbjct: 1238 LLVVEDNLINQKVVCTMLRKAGYRFDVAVNGQEAVD----LITAATSSMANADEPLSSPE 1293
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE--AETGQSIPIIAFTALVTADNERE 184
+ YDLILMDCQM +DG AT IR+LEA+ A +++PI+A TA +
Sbjct: 1294 RSVRWCPYDLILMDCQMPVLDGYGATIEIRKLEAKYAARGARTLPIVAMTAEALPQDRAR 1353
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
CF GM +L+KP L ++ +I+ S
Sbjct: 1354 CFECGMTGYLSKPINYAQLLNQLLSSISLDS 1384
>gi|94264446|ref|ZP_01288235.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455136|gb|EAT05358.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 702
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED Q + + +LKKLG V +GE AVEA+
Sbjct: 469 ILLAEDNPTNQLVALGILKKLGLRADAVGNGEEAVEAL---------------------- 506
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
N P YDL+LMD QM +DG +ATR IR + A +IPIIA TA A + CF
Sbjct: 507 --KNRP-YDLVLMDLQMPVLDGMEATRRIRNPDGGA-LNPAIPIIALTASALASDAEACF 562
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+GM+ F+ KP + +LA + I +
Sbjct: 563 AAGMNGFVPKPIEPSVLATELQRWIGK 589
>gi|424038107|ref|ZP_17776757.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein, partial [Vibrio cholerae HENC-02]
gi|408894769|gb|EKM31371.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein, partial [Vibrio cholerae HENC-02]
Length = 586
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 25/146 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G AVE K +Q
Sbjct: 312 ILVVDDNTVNQKIAGLHVAKAGFTFDLAANGLEAVEMF--------KKNQ---------- 353
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT+ IR+LE E IPIIA TA V D+ ++CF
Sbjct: 354 -------YSLILMDCMMPVMDGFEATQKIRQLEHEQNHSVKIPIIALTASVVDDDIQKCF 406
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIA 212
+ GMD ++ KP + ++L + + A
Sbjct: 407 DVGMDDYVPKPFKANILKEKLAKATA 432
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 46/199 (23%)
Query: 26 EFKPVPVTNNIIPQAEGSSSSCP-VNDDV------TGVDEK------------KVLEGLS 66
++ P P NI+ + +++ P V D+V TG+ K L S
Sbjct: 412 DYVPKPFKANILKEKLAKATAVPIVEDNVSSAFSGTGISAKSKPQDKPEPTSINTLPSRS 471
Query: 67 --VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LLVED V Q++ +L K G + ++G+ AV+
Sbjct: 472 ERILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIAVDMF-------------------- 511
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ +
Sbjct: 512 ----QQDNGFDIILMDCMMPVMDGFEATKEIRAYEKNSGLPKT-PIIALTASVVDDDIQR 566
Query: 185 CFNSGMDTFLNKPAQEHLL 203
C++SGMD ++ KP ++ L
Sbjct: 567 CYDSGMDAYVPKPVRKEKL 585
>gi|333907416|ref|YP_004481002.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
gi|333477422|gb|AEF54083.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
Length = 1450
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 28/181 (15%)
Query: 48 PVNDDVTGVD--EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105
P+ +DV+ +D E K L G+++LLVED +++ +L GA V + + G+ E ++
Sbjct: 1142 PIVEDVSAIDQEEHKSLHGINLLLVEDNEFNRQVASELLAIEGANVVVARGGK---EGVS 1198
Query: 106 LMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG 165
+++N +P +DL+LMD QM +DG +ATR IR + +
Sbjct: 1199 MVLN-------------------QKTPMFDLVLMDMQMPDVDGLEATREIRMDQRFVD-- 1237
Query: 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAE 225
+PI+A TA V+ + + C ++GM+ L KP + A I++ I K+ S + +
Sbjct: 1238 --LPIVAMTANVSIADRQACLDAGMNDHLGKPLDIEQIIACILQLIPEKAILISAANEQQ 1295
Query: 226 A 226
A
Sbjct: 1296 A 1296
>gi|406895332|gb|EKD39927.1| hypothetical protein ACD_75C00243G0001 [uncultured bacterium]
Length = 713
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 30/142 (21%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ + +LL ED V Q++ + ML K G VT+V +G+AAVE T
Sbjct: 589 QSIRILLAEDNPVNQKLAMMMLSKAGYQVTVVPNGKAAVETFT----------------- 631
Query: 123 GSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+P +D ILMD QM MDG +ATR IRR + + IPIIA TA +
Sbjct: 632 -------GTPDGFDTILMDIQMPEMDGYEATRQIRR-----QGFREIPIIAMTANAMKGD 679
Query: 182 ERECFNSGMDTFLNKPAQEHLL 203
+ CF +GM+ ++ KP + ++
Sbjct: 680 KELCFAAGMNDYIMKPIKREIV 701
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ +L+V+D I +L K G V + D AV + I A
Sbjct: 437 LGGVKILVVDDNRANNEILRGILGKAGMEVVTLLDSTTAVAEL---IRA----------- 482
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
E N P + L ++D M + G IR + SIP++A+T+ T
Sbjct: 483 -----EKENRP-FQLAILDLLMPLVSGYDLATGIR---TSSLANPSIPLLAYTS-STERV 532
Query: 182 ERECFNSGMDTFLNKPAQEHLL 203
++C +G FL KPA+ LL
Sbjct: 533 AQKCKEAGFTAFLTKPARRSLL 554
>gi|386020082|ref|YP_005938106.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
4166]
gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
4166]
Length = 914
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 26/142 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q + +LKK G V L +G AV+
Sbjct: 789 ILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVDLY---------------------- 826
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
PH LILMDC+M +DG +A+R IR LEAE + Q++PIIA TA V A++ +
Sbjct: 827 --RRDPHAVQLILMDCEMPELDGFEASRQIRELEAEQQL-QAVPIIAVTAHVLAEHRQRG 883
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
++GMD F+ KP + L A +
Sbjct: 884 LDAGMDEFIGKPLESRQLYACL 905
>gi|345870301|ref|ZP_08822254.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921873|gb|EGV32582.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1140
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 75/161 (46%), Gaps = 30/161 (18%)
Query: 45 SSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104
S P +D V GVD + G +LL +D +++ + L LG GV +DG A
Sbjct: 874 SGIPFSDPV-GVDAARA-AGRLILLADDNETNRKVIGQQLSMLGYGVEFAEDGRQA---- 927
Query: 105 TLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
LE + H++L+L DC M MDG + +R IR LE AE
Sbjct: 928 ---------------------LEKFQAEHFNLLLTDCHMPVMDGYQLSRRIRELEDGAE- 965
Query: 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA 205
PIIA +A R+CF++GMD ++ KP Q H L A
Sbjct: 966 --HTPIIAISADALKGTARKCFDAGMDDYVTKPIQLHELRA 1004
>gi|413932658|gb|AFW67209.1| hypothetical protein ZEAMMB73_026273 [Zea mays]
Length = 737
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
A + +SC + D+K L G+ +LL ED VLQ I +++ +LGA VT+ ++G
Sbjct: 576 AASTEASCLAQEQQKPGDDKP-LAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGAM 634
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
AV + + A + E S Y +I MDCQM MDG +AT++IR E
Sbjct: 635 AVNLLREALEQANASE-----------EDIVSLPYHVIFMDCQMPGMDGYEATKLIR--E 681
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
E G PIIA TA ++ ++ ++GMD L KP + A+
Sbjct: 682 EEQRYGIHTPIIALTAHDMEEDLQKAIDAGMDLHLAKPISRKKIVDAV 729
>gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886]
gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886]
Length = 1306
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 26/145 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+G+SVL+ ED V Q + +L KLG T+ +G A E
Sbjct: 1033 KGVSVLVAEDHPVNQELITTILTKLGCKTTVANNGALAFERFM----------------- 1075
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
S YD+I MDCQM MDG +AT IR+LE+E + ++PI+A TA V + ++
Sbjct: 1076 --------SNRYDMIFMDCQMPVMDGFEATHKIRQLESE-NSLPAVPIVAMTANVMSGDK 1126
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
+C + GM ++ KP ++ L A +
Sbjct: 1127 EKCLDVGMTEYIAKPFKQAELIAVM 1151
>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
Length = 785
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 26/132 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED V Q +G +L+ LG V +V +G AVEA++
Sbjct: 664 VLLAEDNPVNQELGRLVLESLGCKVDVVGNGRQAVEAVS--------------------- 702
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE-AETGQSIPIIAFTALVTADNEREC 185
YDL+ MDCQM +DG +ATR IR+ EAE E + IP+IA TA + C
Sbjct: 703 ----DREYDLVFMDCQMPEVDGYEATRSIRQREAETGEQTRHIPVIALTAHAMDGDRETC 758
Query: 186 FNSGMDTFLNKP 197
++GMD + +KP
Sbjct: 759 LSAGMDDYASKP 770
>gi|418295620|ref|ZP_12907470.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379066953|gb|EHY79696.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 914
Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 24/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q + +LKK G V L +G AV+ L
Sbjct: 789 ILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVD-----------------------L 825
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ LILMDC+M +DG +A+R IR+LEA+ + Q++PIIA TA V A++ +
Sbjct: 826 YRRDPDAVQLILMDCEMPEVDGFEASRQIRKLEADQQL-QAVPIIAVTAHVLAEHRQRGL 884
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD F+ KP + L A +
Sbjct: 885 DSGMDEFIGKPLESQQLYACL 905
>gi|301057759|ref|ZP_07198828.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
gi|300448070|gb|EFK11766.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
Length = 438
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 35/155 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V Q++ MLKK G V + +G+ AVE LM + G
Sbjct: 300 VRILLVEDNPVNQKLAKMMLKKAGYQVQVANNGKEAVE--MLMASQNG------------ 345
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE------------AETGQSIPIIA 172
+DLI MD QM MDG ATR IRRLE E T + IPIIA
Sbjct: 346 ---------FDLIFMDVQMPEMDGLTATREIRRLEKEHVLRPPRGRDFHPLTRRRIPIIA 396
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
TA ++ C ++GMD ++ KP + ++ + +
Sbjct: 397 MTAHAMKGDQETCMDAGMDDYVAKPIKRDVVFSVV 431
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G LLV+D +I R L+ +G + L+ G + + I+
Sbjct: 137 LTGKKALLVDDNETNLKILARYLEPVGMRLVLLDKGMDVLPLLEKSID------------ 184
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE----AETGQSIPIIAFTALV 177
P +D+ + D QM M G + R IR E+ + +S+P++A ++++
Sbjct: 185 -------EQDP-FDICIADIQMPDMSGYEVARQIRLFESPHARLRMSIRSLPLMALSSMM 236
Query: 178 TADNERECFNSGMDTFLNKPAQEHLL 203
D +R C G D FL KP + L
Sbjct: 237 ERDAKR-CGEVGFDGFLAKPVRRERL 261
>gi|212543487|ref|XP_002151898.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces marneffei ATCC 18224]
gi|210066805|gb|EEA20898.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces marneffei ATCC 18224]
Length = 1313
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1100 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNEVNQKLAVKILEKC 1149
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G+ A++A+ KN + +D+ILMD QM M
Sbjct: 1150 NHGVTVVGNGQEALDAV--------KNRR-----------------FDIILMDVQMPIMG 1184
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E E ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1185 GFEATAKIREYERENNLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMIQTI 1243
Query: 208 VE 209
++
Sbjct: 1244 LK 1245
>gi|334131300|ref|ZP_08505065.1| Putative histidine kinase [Methyloversatilis universalis FAM5]
gi|333443649|gb|EGK71611.1| Putative histidine kinase [Methyloversatilis universalis FAM5]
Length = 1042
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 35/187 (18%)
Query: 28 KPV---PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
+PV P+ + +I S+ C E + L ++LL ED V Q + +R+L
Sbjct: 739 RPVQTAPLLDALITATGAGSARCASGASALSPSEHRPL---TLLLAEDNPVNQTLAVRLL 795
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
++LG V +V +G +AV AA + YD ILMD QM
Sbjct: 796 ERLGHRVDVVDNGLSAVS------KAAEQR-------------------YDAILMDLQMP 830
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
M G +ATR IR + E T PIIA TA A + +CF +GMD +++KP Q L
Sbjct: 831 QMGGFEATRHIRAQDGERHT----PIIAMTAHAMAGDREKCFAAGMDAYVSKPVQVAALI 886
Query: 205 AAIVETI 211
A+ E +
Sbjct: 887 RALEEAL 893
>gi|212543489|ref|XP_002151899.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces marneffei ATCC 18224]
gi|210066806|gb|EEA20899.1| two-component osmosensing histidine kinase (Bos1), putative
[Talaromyces marneffei ATCC 18224]
Length = 1319
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1100 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNEVNQKLAVKILEKC 1149
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
GVT+V +G+ A++A+ KN + +D+ILMD QM M
Sbjct: 1150 NHGVTVVGNGQEALDAV--------KNRR-----------------FDIILMDVQMPIMG 1184
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E E ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1185 GFEATAKIREYERENNLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMIQTI 1243
Query: 208 VE 209
++
Sbjct: 1244 LK 1245
>gi|402216678|gb|EJT96762.1| hypothetical protein DACRYDRAFT_119835 [Dacryopinax sp. DJM-731 SS1]
Length = 1248
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 23/131 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++GIR+L+KL + ++G+ A++ M+ A
Sbjct: 1123 ILLVEDNVVNQKLGIRLLQKLSHRCDVAENGKVALD----MLQA---------------- 1162
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
N Y L+LMDCQM M+G + TR IR LE +PI+A TA V++++ E
Sbjct: 1163 ---NEDKYSLVLMDCQMPVMNGFECTRQIRSLEHTGVRKGRLPIVALTANVSSESREESQ 1219
Query: 187 NSGMDTFLNKP 197
+G D FL KP
Sbjct: 1220 QAGADFFLPKP 1230
>gi|386288898|ref|ZP_10066037.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
gi|385277902|gb|EIF41875.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
Length = 1255
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 22/166 (13%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +LL ED + Q + ML +LG V + DG + A+ ++ N+ +N
Sbjct: 974 LIGHKILLAEDNPINQEVSRCMLDELGISVDIANDG---IMALQMLCNSDSQNP------ 1024
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
Y LILMDCQM MDG +R IR A ++ + IPIIA TA + +
Sbjct: 1025 ------------YSLILMDCQMPKMDGYVVSRRIRNGGA-GDSYREIPIIALTANAMSGD 1071
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
+ +C N+GM+ +L+KP + L + + + S + E A AQ
Sbjct: 1072 KEKCINAGMNDYLSKPMEAADLREKLTQWLQSGSQNSASVESATAQ 1117
>gi|345893544|ref|ZP_08844340.1| hypothetical protein HMPREF1022_03000 [Desulfovibrio sp.
6_1_46AFAA]
gi|345046103|gb|EGW49997.1| hypothetical protein HMPREF1022_03000 [Desulfovibrio sp.
6_1_46AFAA]
Length = 953
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 30/204 (14%)
Query: 12 SHPEKLELEHGLQLEFKPV-PVT-NNIIPQAEGSSSSCPVNDDVTGVDEKKVLE--GLSV 67
++ EK E H KPV PVT N I +A G + + P D+ G ++ + + G V
Sbjct: 637 AYREKGENLHFAGFLVKPVNPVTLWNTILKALGKNPASPRLADMDGTEDGALSQRRGTRV 696
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LLVED + Q + +++++G VTL ++G AV A
Sbjct: 697 LLVEDNEINQEVASSLMERMGMSVTLAENGLNAVNAC----------------------- 733
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
+ +D+I MD QM MDG +A R +R EA+ + + PIIA TA ++ + N
Sbjct: 734 --KAKTFDIIFMDIQMPVMDGLEAARRLRAQEAD-DGAEPTPIIAMTAHAMREDREKSRN 790
Query: 188 SGMDTFLNKPAQEHLLAAAIVETI 211
+GMD + KP +LA +++ +
Sbjct: 791 AGMDDHITKPIDPDMLARILIKWV 814
>gi|418520299|ref|ZP_13086349.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410704253|gb|EKQ62738.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 756
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ M
Sbjct: 486 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM---------------------- 523
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A + C
Sbjct: 524 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRERCL 579
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 580 AAGMDDYLSKPVAREQLDACLQRWLPRQA 608
>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
Length = 823
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 65/131 (49%), Gaps = 24/131 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q++ R+L+K G V V DG AVEA+ +H+
Sbjct: 691 VLLVEDNLVNQKVASRLLQKYGHVVITVTDGLEAVEALK-------SDHKA--------- 734
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDL+LMD QM MDG +ATR IR+ E IPII TA + C+
Sbjct: 735 -------YDLVLMDIQMPGMDGLEATRRIRKDEL-GSGWHKIPIIGLTANAMKGYQDICY 786
Query: 187 NSGMDTFLNKP 197
+GMD +L KP
Sbjct: 787 EAGMDGYLPKP 797
>gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citri str. 306]
Length = 769
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ M
Sbjct: 499 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM---------------------- 536
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A + C
Sbjct: 537 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRERCL 592
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 593 AAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1011
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 42/173 (24%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V +R+ LKK GA V G+AA++ + L
Sbjct: 859 QSLLYGKKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQL------------ 906
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAE---TGQS------- 167
PH +D MD QM MDG +ATR IR++E++A GQS
Sbjct: 907 -------------PHSFDACFMDIQMPEMDGFEATRRIRQMESQANEQINGQSMAEGGAA 953
Query: 168 ------IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+PI+A TA V EC SGMD +++KP +E L A+ + K
Sbjct: 954 RKGEWHVPILAMTADVIHATYDECLKSGMDGYVSKPFEEENLYQAVAKFFKAK 1006
>gi|402573960|ref|YP_006623303.1| signal transduction histidine kinase [Desulfosporosinus meridiei
DSM 13257]
gi|402255157|gb|AFQ45432.1| signal transduction histidine kinase [Desulfosporosinus meridiei
DSM 13257]
Length = 906
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 30/160 (18%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S +N+ V + E + E S+LLVED QR+ + +LKKLG V L +G+ AVE
Sbjct: 768 SEEVEINNSV--IQETRGDEKPSILLVEDMLANQRLEMTILKKLGYTVELATNGQQAVEI 825
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
N+ YDLILMDCQM MDG +AT IR+ ++
Sbjct: 826 C-------------------------NTKKYDLILMDCQMPIMDGYEATIQIRK---KSV 857
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
++ I+A TA + +C N+GMD +++KP +L
Sbjct: 858 FNKNTTILAMTAYTMEGDREKCINAGMDDYISKPVSMGVL 897
>gi|418517225|ref|ZP_13083391.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706125|gb|EKQ64589.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 754
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ M
Sbjct: 484 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM---------------------- 521
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A + C
Sbjct: 522 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRERCL 577
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 578 AAGMDDYLSKPVAREQLDACLQRWLPRQA 606
>gi|381170103|ref|ZP_09879263.1| His Kinase A domain protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380689383|emb|CCG35750.1| His Kinase A domain protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 754
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ M
Sbjct: 484 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM---------------------- 521
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A + C
Sbjct: 522 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRERCL 577
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 578 AAGMDDYLSKPVAREQLDACLQRWLPRQA 606
>gi|350552273|ref|ZP_08921477.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794650|gb|EGZ48461.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1258
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + QR+ ++MLKKLG V G A+ A+ +
Sbjct: 1134 ILLVEDNLINQRMMMQMLKKLGLRADAVAHGAEALNALEMT------------------- 1174
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
HYDL++MD +M MDG +ATR IR + Q IPIIA TA + +C
Sbjct: 1175 ------HYDLVIMDVKMPIMDGLEATRQIRAHATPMRSSQDIPIIAITAHAMHLDREKCL 1228
Query: 187 NSGMDTFLNKPAQEHLL 203
+GM+ +L KP H L
Sbjct: 1229 QAGMNDYLAKPITLHSL 1245
>gi|390990751|ref|ZP_10261031.1| his Kinase A domain protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372554488|emb|CCF68006.1| his Kinase A domain protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 754
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ M
Sbjct: 484 ILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM---------------------- 521
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A + C
Sbjct: 522 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRERCL 577
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 578 AAGMDDYLSKPVAREQLDACLQRWLPRQA 606
>gi|431928032|ref|YP_007241066.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
gi|431826319|gb|AGA87436.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
Length = 914
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 24/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q + +LKK G V L +G AV+ L
Sbjct: 789 ILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVD-----------------------L 825
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ LILMDC+M +DG +A+R IR+LEA+ + Q++PIIA TA V A++ +
Sbjct: 826 YRRDPDAVQLILMDCEMPELDGFEASRQIRKLEADQQL-QAVPIIAVTAHVLAEHRQRGL 884
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
SGMD F+ KP + L A +
Sbjct: 885 ESGMDEFIGKPLESRQLYACL 905
>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
Length = 976
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 30/204 (14%)
Query: 12 SHPEKLELEHGLQLEFKPV-PVT-NNIIPQAEGSSSSCPVNDDVTGVDEKKVLE--GLSV 67
++ EK E H KPV PVT N I +A G + + P D+ G ++ + + G V
Sbjct: 660 AYREKGENLHFAGFLVKPVNPVTLWNTILKALGKNPASPRLADMDGTEDGALSQRRGTRV 719
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LLVED + Q + +++++G VTL ++G AV A
Sbjct: 720 LLVEDNEINQEVASSLMERMGMSVTLAENGLNAVNAC----------------------- 756
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
+ +D+I MD QM MDG +A R +R EA+ + + PIIA TA ++ + N
Sbjct: 757 --KAKTFDIIFMDIQMPVMDGLEAARRLRAQEAD-DGAEPTPIIAMTAHAMREDREKSRN 813
Query: 188 SGMDTFLNKPAQEHLLAAAIVETI 211
+GMD + KP +LA +++ +
Sbjct: 814 AGMDDHITKPIDPDMLARILIKWV 837
>gi|83945039|ref|ZP_00957405.1| sensor histidine kinase/response regulator [Oceanicaulis sp.
HTCC2633]
gi|83851821|gb|EAP89676.1| sensor histidine kinase/response regulator [Oceanicaulis sp.
HTCC2633]
Length = 614
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 32/153 (20%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
++ L+GL+VL+ ED V I +L +LGAGV +V G AA+EA+
Sbjct: 481 ERALDGLTVLVAEDDPVNAMIARTVLTRLGAGVEVVDTGRAALEAV-------------- 526
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+ +D L+D +M M G +A IR L + ++P+IA TA T
Sbjct: 527 -----------SGGRFDAALLDMRMPEMSGLEAAAAIRSLRSHV---AALPLIALTANAT 572
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
D+ C +GMD FL KP Q A++ET+
Sbjct: 573 EDDREACLTAGMDAFLTKPLQPQ----ALIETL 601
>gi|46201757|ref|ZP_00054434.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
MS-1]
Length = 514
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED V Q++ + +L+KLG V + DG AVEA+
Sbjct: 266 LRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAV-------------------- 305
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ YDL+LMD QM MDG +AT IR L IPI+A TA +++
Sbjct: 306 -----RARPYDLVLMDVQMPEMDGLQATNAIRALSGPP---SRIPIVAMTANAMRGDDKM 357
Query: 185 CFNSGMDTFLNKP 197
C ++GMD++++KP
Sbjct: 358 CLDAGMDSYISKP 370
>gi|212556280|gb|ACJ28734.1| Sensor protein LuxQ [Shewanella piezotolerans WP3]
Length = 582
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 31/148 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+E L +L+VED V Q + +L K G T+ DG+ A++ +T+
Sbjct: 457 IENLKILVVEDSKVNQMLIEMILAKFGITPTIANDGQEAIDYLTV--------------- 501
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ D++ MDC+M +DG KAT ++R E G + PIIA TA T+
Sbjct: 502 ----------NNVDIVFMDCRMPVVDGFKATSLLR------EKGYTKPIIALTASTTSVE 545
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+C+ GMD +NKP Q+ + AA+++
Sbjct: 546 TEQCYQCGMDEIINKPYQQDDIKAALIK 573
>gi|375006650|ref|YP_004975434.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357427908|emb|CBS90857.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1117
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 32/149 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+ ED V Q++ + +L++ G V +GE AVEA++
Sbjct: 853 VRVLVAEDNPVNQQLTLALLRRAGHSAEAVSNGEEAVEAVS------------------- 893
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ YDL+LMD QM MDG +ATR IRRL A IPI+A TA +
Sbjct: 894 ------ARRYDLVLMDVQMPVMDGLEATRRIRRLSGPA---TRIPIVALTANAMQGDATI 944
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C +GMD +L+KP A +++TIAR
Sbjct: 945 CLEAGMDDYLSKPIN----ARKLLDTIAR 969
>gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 511
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 76/163 (46%), Gaps = 28/163 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L LS+LL ED Q++ +L + G VTL +G A+E L
Sbjct: 271 LPSLSILLAEDNVFNQKVAAGLLNREGHRVTLANNGLEALE----------------KLQ 314
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
G +DLILMD QM MDG +ATR IR L +IPIIA TA AD+
Sbjct: 315 DG---------RFDLILMDMQMPEMDGPEATRRIRGLPGAL---AAIPIIALTANAMADD 362
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQA 224
C +GMD + KP LL AAI E + R + + E++
Sbjct: 363 VARCRAAGMDGHVAKPIDPLLLRAAIAEVLPRHAPEARAGERS 405
>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
Length = 1248
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 28/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+E L +L+ ED V Q++ + L+KLG +V++G A++A+
Sbjct: 994 IEKLRILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDALA---------------- 1037
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YD++ MDCQM +DG +ATR +R +E + + +IA TA +
Sbjct: 1038 ---------RSRYDIVFMDCQMPELDGYEATRDLRAIEGDV---RHTWVIAMTANSLEGD 1085
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+C N+GMD +++KP + +L AAI
Sbjct: 1086 REKCLNAGMDDYVSKPVKPEVLHAAI 1111
>gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 797
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 34/158 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + +L+KLG V++ +G+ A++ +
Sbjct: 669 VLLVEDNQVNQLVAKTILRKLGYEVSIANNGQDALDLV---------------------- 706
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ HYD+ILMDC M MDG +ATR+IR + ++PIIA TA V ++ C
Sbjct: 707 ---GNDHYDIILMDCHMPVMDGYEATRLIR----QNSKYDALPIIAVTANVMQGDKERCL 759
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI-----ARKSHKFS 219
+ GM+ +L KP ++ L + + + A S KF+
Sbjct: 760 SCGMNDYLTKPYEKKALTQMLAKWLEDPVAAAASSKFA 797
>gi|343497137|ref|ZP_08735216.1| hypothetical protein VINI7043_12051 [Vibrio nigripulchritudo ATCC
27043]
gi|342819909|gb|EGU54742.1| hypothetical protein VINI7043_12051 [Vibrio nigripulchritudo ATCC
27043]
Length = 571
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E ++L+ L +L+VED V Q + +MLKKLG +GE VEA++
Sbjct: 448 EDEMLDSLKILVVEDLRVNQFVIQKMLKKLGITPDFANNGEEGVEAVS------------ 495
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
S HYDL+ MDC+M MDG AT +R E +PI+A TA
Sbjct: 496 -------------SHHYDLVFMDCRMPVMDGFDATLTLR------ERNIRVPIVALTAGT 536
Query: 178 TADNERECFNSGMDTFLNKP 197
T +C GM+ LNKP
Sbjct: 537 TLAEREKCLQVGMNDILNKP 556
>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 514
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 28/192 (14%)
Query: 22 GLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGI 81
G ++ F +P S++ P D D L ++VLL ED V Q++
Sbjct: 351 GGEIGFDSIPGEGTTFHFTLPLSAALPDQDSGAAEDAGPDLPPMAVLLAEDNPVNQKLTT 410
Query: 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141
+L + G VTL ++G A+ A+ H+DL+LMD
Sbjct: 411 TLLDRWGQRVTLARNGAEAIAAVA-------------------------RDHFDLVLMDV 445
Query: 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH 201
M +DG +ATR IR + IPIIA TA V + C ++GMD ++ KP +
Sbjct: 446 HMPGIDGLEATRRIRAMSGPV---AKIPIIAMTADVMDGDAALCLDAGMDDYVAKPVEPT 502
Query: 202 LLAAAIVETIAR 213
L AA+ I R
Sbjct: 503 RLLAALHRAIRR 514
>gi|90413941|ref|ZP_01221926.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK]
gi|90325003|gb|EAS41518.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK]
Length = 908
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 26/139 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q++ +LKK G + L +G+ AV+ L
Sbjct: 784 ILIVEDNLVNQKVASLLLKKAGYQIVLANNGQEAVD-----------------------L 820
Query: 127 ETHNSP-HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
T P + ILMDC M MDG AT IR E E +T + +PIIA TA V ++ +C
Sbjct: 821 ITQKEPISFKAILMDCMMPIMDGFAATEAIRVWEKEQQTDR-LPIIALTASVLDEDISKC 879
Query: 186 FNSGMDTFLNKPA-QEHLL 203
+ +GMD ++ KP +EHLL
Sbjct: 880 YEAGMDDYVAKPFRKEHLL 898
>gi|410663989|ref|YP_006916360.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409026346|gb|AFU98630.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 1423
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 29/136 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G S+LLVED + Q I + + G V + +G+ AV+ +
Sbjct: 1161 LRGASLLLVEDNEINQEIAREIFESAGFNVNVASNGQDAVDWFS---------------- 1204
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H DLILMD QM +DG ATR IR E GQS+PIIA TA ++
Sbjct: 1205 ---------QGHADLILMDVQMPVLDGESATRTIR----ATEKGQSVPIIAMTANAMKED 1251
Query: 182 ERECFNSGMDTFLNKP 197
E+ C +GM+ +L KP
Sbjct: 1252 EQRCLAAGMNDYLTKP 1267
>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
Length = 1322
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNERE 184
LE S YDLILMDCQM ++DG + TR IR +E +A+ G+ IPI+A TA + DN+R
Sbjct: 1035 LEKLKSQTYDLILMDCQMPTLDGFETTRKIREIEKQAQNGEHIPIVALTANAIQGDNDR- 1093
Query: 185 CFNSGMDTFLNKP 197
C +GMD +L KP
Sbjct: 1094 CRQAGMDGYLTKP 1106
>gi|303248282|ref|ZP_07334544.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302490307|gb|EFL50219.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 825
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 29/151 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +LLVED ++ Q++ ML++ GA V + G AVE L
Sbjct: 315 LAGALILLVEDNSINQQVAREMLERFGAVVDVAGGGREAVEMARLAF------------- 361
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YD +LMD QM MDG ATR IRRL + +PI+A TA + +
Sbjct: 362 ------------YDAVLMDVQMPVMDGLAATRAIRRLPGCGD----LPIVALTAHALSGD 405
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ C +GM+ +L KP L AA+ + IA
Sbjct: 406 RQRCLEAGMNDYLTKPIDPARLLAALGQWIA 436
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAET---GQSIPIIAFTALVTADNERECFNSGM 190
+D ILMD +M +DG ATR+IR+L A+ + IPI+A T+ A +GM
Sbjct: 636 FDCILMDIEMPELDGPAATRIIRKLLADGVSPPCPPDIPIMALTSHDAAPELARGLEAGM 695
Query: 191 DTFLNKPAQ-EHLLAA 205
D L K + E LLAA
Sbjct: 696 DGCLRKVFEYEELLAA 711
>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 945
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D++ V VLL ED V + + ML+ LG T+V++G AVEA+T
Sbjct: 660 DDQAVPFAAHVLLAEDNPVNREVAFTMLELLGCTTTMVENGREAVEALT----------- 708
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ +DL+LMDC M MDG AT +IR E +A + I+A TA
Sbjct: 709 --------------NRSFDLVLMDCHMPEMDGLTATALIREQETQATQPRHTTIVALTAN 754
Query: 177 VTADNERECFNSGMDTFLNKP 197
+ C +GMD +L+KP
Sbjct: 755 ALQGDRERCLAAGMDDYLSKP 775
>gi|149374896|ref|ZP_01892669.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149360785|gb|EDM49236.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 647
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
L+VED V QR+ +L++LG DGE A+E ++ H G
Sbjct: 526 LVVEDNMVNQRVATALLRRLGFETDAAADGEEALEL-------------VRTNHSG---- 568
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADNERECF 186
YD+ILMDCQM MDG + TR IR E E GQ PIIA TA E C
Sbjct: 569 ------YDVILMDCQMPVMDGYETTRCIR--EWEKSNGQGGTPIIALTADALPGTETSCR 620
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+GM+ +L KP ++ L A + I
Sbjct: 621 EAGMNDYLAKPVRKENLRAVLSRWI 645
>gi|94264858|ref|ZP_01288633.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454679|gb|EAT04944.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 701
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED Q + + +LKKLG V +GE AVEA+
Sbjct: 469 ILLAEDNPTNQLVALGILKKLGLRADAVGNGEEAVEAL---------------------- 506
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
N P YDL+LMD QM +DG +ATR IR E A +IPIIA TA + CF
Sbjct: 507 --KNRP-YDLVLMDLQMPVLDGMEATRRIRNPEGGA-INPAIPIIALTASALPSDAEACF 562
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+GM+ F+ KP + +LA + I +
Sbjct: 563 AAGMNGFVPKPIEPSVLATELQRWIGK 589
>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
Length = 1500
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ + ML++LG V +V +G+ A++AM+ GK
Sbjct: 665 VLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALDAMS------GKV------------ 706
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y+L+LMDC M MDG +ATR IR EA + +PIIA TA V + +C
Sbjct: 707 -------YELVLMDCHMPQMDGYEATRQIRIREA---GKKQVPIIAMTANVRKGDSDKCI 756
Query: 187 NSGMDTFLNKPAQEHLL 203
++GM+ +L KP + +L
Sbjct: 757 SAGMNDYLPKPLRLSVL 773
>gi|398399533|ref|XP_003853118.1| histidine kinase HHK6p [Zymoseptoria tritici IPO323]
gi|339473000|gb|EGP88094.1| histidine kinase HHK6p [Zymoseptoria tritici IPO323]
Length = 1383
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 25/178 (14%)
Query: 33 TNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
+N +IP+ S+ D +++ E VL+VED + Q+I ++ ++KLG V
Sbjct: 1033 SNVVIPKTSAPWSNTSAEDQELSDEDRNATE---VLVVEDNPINQQIALKTIRKLGFPVR 1089
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
V +G+ A++ + A+ + Q P D+ILMD QM MDG KAT
Sbjct: 1090 AVWNGKEALDYL-----ASPSSSQ---------------PRPDIILMDVQMPIMDGYKAT 1129
Query: 153 RVIRR--LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
IR L + QS PI+A TA + +C +GMD +L KP ++ L +V
Sbjct: 1130 YTIRNSPLFTSSPLLQSTPIVAMTASAIQGDREKCQAAGMDDYLAKPVKKPHLEKMLV 1187
>gi|392423698|ref|YP_006464692.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391353661|gb|AFM39360.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 914
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 28/145 (19%)
Query: 53 VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
+T + K + LS+LLVED+ V QRI + MLK+LG + +G+ AVE
Sbjct: 779 LTTAENYKQMADLSILLVEDKEVNQRIELIMLKRLGYSANIAVNGKQAVELC-------- 830
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
++ YD+I MDCQM MDG +AT IR++ + + PIIA
Sbjct: 831 -----------------DTRKYDIIFMDCQMPVMDGYEATDRIRKM---SSLNKHSPIIA 870
Query: 173 FTALVTADNERECFNSGMDTFLNKP 197
TA + C +GMD +++KP
Sbjct: 871 MTAHAMEGDRERCVAAGMDDYISKP 895
>gi|269963784|ref|ZP_06178102.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831517|gb|EEZ85658.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 558
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G+ AV+ K +Q
Sbjct: 278 ILVVDDNTVNQKIAGLHVTKAGFTFDLAANGQEAVDMF--------KKNQ---------- 319
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT IR++E E IPIIA TA V D+ ++CF
Sbjct: 320 -------YALILMDCMMPVMDGFEATEKIRQVEKEESRSYRIPIIALTASVVDDDIQKCF 372
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + ++L + + +
Sbjct: 373 DVGMDDYVPKPFKANILKEKLAKAV 397
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AV+
Sbjct: 439 ILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIAVDM----------------------F 476
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ NS +D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ + C+
Sbjct: 477 QQDNS--FDIILMDCMMPVMDGFQATKEIRAYERVSGLPKT-PIIALTASVVDDDIQRCY 533
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 534 DSGMDAYVPKPVRKEKL 550
>gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 837
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 28/159 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+GL+VL+ ED +G+++L GA V V++G A+EA+
Sbjct: 699 LDGLNVLMAEDDHFSGILGVKLLGAFGASVRHVQNGRQALEAL----------------- 741
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S +DL+LMD QM MDG +AT IR +A + ++IPIIA T+ D
Sbjct: 742 --------RSEPFDLVLMDVQMPVMDGVEATVRIRHGDA-GDCARNIPIIAMTSYAM-DG 791
Query: 182 ERECF-NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
+RE F +GM+ +++KP L +AI E + R+S K S
Sbjct: 792 DREKFLKAGMNAYVSKPVDIKELMSAISEMLHRESAKRS 830
>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
Length = 833
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 27/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+VED + +++ + +LKKLG + ++GE A++ M QN
Sbjct: 708 LRILVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALKMM-------------QN----- 749
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDLILMD QM MDG TR +R+ E E + PIIA TA + +
Sbjct: 750 -------QAYDLILMDLQMPVMDGYSTTRTVRQWEREGR--RRTPIIAMTAHALSGDRER 800
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C +GMD +L KP + LL A +
Sbjct: 801 CAEAGMDDYLAKPVKAELLMAVL 823
>gi|390950873|ref|YP_006414632.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390427442|gb|AFL74507.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1091
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL +LL ED + Q + + L++LG V L +G AVE
Sbjct: 748 GLRLLLAEDNPINQEVALSQLQELGFAVDLASNGAEAVE--------------------- 786
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
L N+ Y LILMD QM +M+G +ATR IRRL A T PI+A TA ++
Sbjct: 787 --LARRNA--YALILMDVQMPTMNGLEATRAIRRLPGRAVT----PILAMTAGAFQEDRE 838
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
EC +GMD L KP +L A +++ +
Sbjct: 839 ECLAAGMDDHLAKPVDPDVLHATLLKWL 866
>gi|424045676|ref|ZP_17783241.1| response regulator [Vibrio cholerae HENC-03]
gi|408886005|gb|EKM24698.1| response regulator [Vibrio cholerae HENC-03]
Length = 998
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q+I + K G L +G+ AV+ K +Q
Sbjct: 718 ILVVDDNTVNQKIAGLHVTKAGFTFDLAANGQEAVDMF--------KKNQ---------- 759
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG +AT IR++E E IPIIA TA V D+ ++CF
Sbjct: 760 -------YALILMDCMMPVMDGFEATEKIRQVEKEENRSYRIPIIALTASVVDDDIQKCF 812
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + ++L + + +
Sbjct: 813 DVGMDDYVPKPFKANILKEKLAKAV 837
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AV+
Sbjct: 879 ILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIAVDM----------------------F 916
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ NS +D+ILMDC M MDG +AT+ IR E + ++ PIIA TA V D+ + C+
Sbjct: 917 QQDNS--FDIILMDCMMPVMDGFQATKEIRAYERVSGLPKT-PIIALTASVVDDDIQRCY 973
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 974 DSGMDAYVPKPVRKEKL 990
>gi|440803184|gb|ELR24093.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 910
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 44 SSSCPVNDDVTGVDEKKV------LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
+SS D ++KK+ L+G VLLVED V Q++ ML LG V + +G
Sbjct: 646 TSSTRSGDRAVDKEQKKLQELYQGLQGTRVLLVEDNMVNQKVAKLMLTSLGCEVAIASNG 705
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
+ ++ M NA + +D++LMD QM MDG A+ IR
Sbjct: 706 QIGLDLMAQRANAGAEA-------------------FDVVLMDLQMPVMDGFIASTRIRE 746
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
E AE PI+ TA T++ + C GMD +L+KP + LA IA +HK
Sbjct: 747 RE-RAEKRPRTPIVTLTASTTSEYQERCTACGMDGWLSKPFSKEQLAT----IIATWTHK 801
Query: 218 F 218
+
Sbjct: 802 Y 802
>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810]
gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810]
Length = 1051
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 932 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQRDGG------------- 974
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +AT+ IR EA ++ PIIA TA V D+ + CF
Sbjct: 975 -------FDIILMDCMMPVMDGFEATKQIRAYEASLGLEKT-PIIALTASVVDDDIQRCF 1026
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 1027 DSGMDAYVPKPVRKEKL 1043
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+V+D V Q+I + K G + +GE AV+
Sbjct: 770 VLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMF---------------------- 807
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y LILMDC M MDG +AT+ IR++E + IPIIA TA V D+ ++CF
Sbjct: 808 ---RTSQYCLILMDCMMPVMDGFEATKQIRQIELKENRTFRIPIIALTASVVDDDIQKCF 864
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + LL
Sbjct: 865 DVGMDDYVPKPFKADLL 881
>gi|386391659|ref|ZP_10076440.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385732537|gb|EIG52735.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 838
Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 26/148 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED+ + + + RML+K G VT+ DG AVE +
Sbjct: 713 ILLVEDEEMNREVARRMLEKFGWDVTVATDGREAVEKVF--------------------- 751
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ H+D ILMD QM MDG +ATR IR E ++IPIIA TA + + +
Sbjct: 752 ----ANHFDCILMDIQMPVMDGVEATRRIRTAEPLGAR-RAIPIIAMTAYAMSGDREKFL 806
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARK 214
GMD +++KP + L A + + +AR+
Sbjct: 807 AFGMDDYISKPFEHPDLRAVVEKALARR 834
>gi|28898529|ref|NP_798134.1| histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
AN-5034]
gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
Peru-466]
gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
AQ4037]
gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
Peru-466]
gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
AN-5034]
gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
AQ4037]
Length = 1051
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 932 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQRDGG------------- 974
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +AT+ IR EA ++ PIIA TA V D+ + CF
Sbjct: 975 -------FDIILMDCMMPVMDGFEATKQIRAYEASLGLEKT-PIIALTASVVDDDIQRCF 1026
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 1027 DSGMDAYVPKPVRKEKL 1043
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+V+D V Q+I + K G + +GE AV+
Sbjct: 770 VLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLF---------------------- 807
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y LILMDC M MDG +AT+ IR++E + IPIIA TA V D+ ++CF
Sbjct: 808 ---RTSQYCLILMDCMMPVMDGFEATKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCF 864
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + LL
Sbjct: 865 DVGMDDYVPKPFKADLL 881
>gi|386393709|ref|ZP_10078490.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385734587|gb|EIG54785.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1944
Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E L +L VED AV Q G RML+KLG V DG AV+
Sbjct: 1807 ERLRILFVEDDAVNQMTGKRMLEKLGHAVVAAGDGREAVDCFL----------------- 1849
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+DLI MD QM MDG +ATR IR A +PIIA TA +
Sbjct: 1850 --------RQAFDLIFMDIQMPRMDGVEATRAIRGAGAPGRR-TDLPIIALTAYAMTSDR 1900
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ +G+D ++ KP + H+L AI +A ++
Sbjct: 1901 EKFLAAGLDDYVAKPIELHMLEEAIGRVMAGRA 1933
>gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
Length = 662
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V + + L GL VL+VED + Q + MLK+ +V DG +EA+ ++ +
Sbjct: 530 VSQSRDLSGLHVLVVEDNEINQVVIGEMLKQRQITYDIVNDG---LEALAILED------ 580
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
E + Y LILMDCQM +MDG + T+ IR+ + T IPIIA TA
Sbjct: 581 -----------ELSSENPYTLILMDCQMPNMDGYQTTQHIRQFSSHVAT---IPIIALTA 626
Query: 176 LVTADNERECFNSGMDTFLNKPA-QEHLLAA 205
++ +CF SGM +L+KP QE+L A
Sbjct: 627 NALSEERDKCFASGMSEYLSKPVDQENLYAV 657
>gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614]
gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614]
Length = 977
Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +L+VED + Q + I +L+ LG V + DG AA+EA+
Sbjct: 843 GARLLVVEDSEINQLVAIGILEHLGYQVEVAADGLAALEAL------------------- 883
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ +D +LMDC M MDG +AT IRRLE G+ +PIIA TA A +
Sbjct: 884 ------RTQSFDAVLMDCLMPVMDGYQATAEIRRLEL---GGRGLPIIAMTASAVAGDRE 934
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEA 226
C +GMD ++ KP L + + S S + AE
Sbjct: 935 RCLAAGMDDYITKPVTSGSLETVLAHWLRSPSTAGSAEVSAEG 977
>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 864
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 80/170 (47%), Gaps = 33/170 (19%)
Query: 39 QAEGSSSSCPVNDD----VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRM-LKKLGAGVTL 93
Q+E S+ CPV + G E V + L VLLVED V Q + +RM L+K+G V L
Sbjct: 575 QSEPVSAVCPVVPEGKAVTQGDREPGVRDVLPVLLVEDNRVNQ-LAVRMQLEKMGFEVHL 633
Query: 94 VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR 153
G A+E + KN Y L+LMDCQM MDG +ATR
Sbjct: 634 AAHGREALEKLE-------KNT------------------YALVLMDCQMPVMDGYEATR 668
Query: 154 VIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
IR E T +PIIA TA + +C +GMD L KP + LL
Sbjct: 669 AIR--AKECGTDNHLPIIALTANAMEQDREKCLAAGMDGHLTKPVRPELL 716
>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 818
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q +G ML+ LG V + ++G AA++ ++Q
Sbjct: 565 VLLVEDNVVNQEVGRGMLESLGCRVKVAENGLAALK-------------EVQR------- 604
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLI MDCQM +DG ATR IR + E + +PIIA TA + C
Sbjct: 605 -----RKYDLIFMDCQMPVLDGLGATRRIR--QREEGSSSRVPIIALTAYAMKGDREACL 657
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
+G D +L+KP L+ +I + C E + AQ
Sbjct: 658 AAGADDYLSKPFSREQLSKSI-------ERRLGCGEASSAQ 691
>gi|385331834|ref|YP_005885785.1| signal transduction histidine kinase [Marinobacter adhaerens HP15]
gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [Marinobacter adhaerens HP15]
Length = 775
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 29/143 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LLVED V Q + + +LKKLG ++G A++A+
Sbjct: 655 LKILLVEDNQVNQMVAVSLLKKLGHRTDHAENGLKAIQAL-------------------- 694
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ HYDL+LMDCQM MDG +AT+ IR + + +PIIA TA V + +
Sbjct: 695 -----ENNHYDLVLMDCQMPVMDGYEATQRIR----QNPEWKELPIIAVTANVMQGDRED 745
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C SGM+ ++ KP + L I
Sbjct: 746 CLASGMNDYITKPYKREELRTVI 768
>gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1195
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 30/146 (20%)
Query: 53 VTGVDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
V +KK+ L L VLLVED + Q + +L++ GA VTL G AA+E +T
Sbjct: 840 VLSAHQKKLELNRLRVLLVEDNRINQEVAAEILQQYGAQVTLADHGAAALELLT------ 893
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
P +D++LMD M MDG +ATR IR L A ++P+I
Sbjct: 894 -------------------GPGFDVVLMDLHMPVMDGFEATRKIRELYDSA----TLPVI 930
Query: 172 AFTALVTADNERECFNSGMDTFLNKP 197
A TA V D+ C +GM F+ KP
Sbjct: 931 AMTAAVLQDDRERCTAAGMVDFVAKP 956
>gi|433657885|ref|YP_007275264.1| CheY-like receiver [Vibrio parahaemolyticus BB22OP]
gi|432508573|gb|AGB10090.1| CheY-like receiver [Vibrio parahaemolyticus BB22OP]
Length = 1051
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 932 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQRDGG------------- 974
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +AT+ IR EA ++ PIIA TA V D+ + CF
Sbjct: 975 -------FDIILMDCMMPVMDGFEATKQIRAYEASLGLEKT-PIIALTASVVDDDIQRCF 1026
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 1027 DSGMDAYVPKPVRKEKL 1043
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+V+D V Q+I + K G + +GE AV+
Sbjct: 770 VLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMF---------------------- 807
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y LILMDC M MDG +AT+ IR++E + IPIIA TA V D+ ++CF
Sbjct: 808 ---RTSQYCLILMDCMMPVMDGFEATKQIRQIELKENRTFRIPIIALTASVVDDDIQKCF 864
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + LL
Sbjct: 865 DVGMDDYVPKPFKADLL 881
>gi|410632209|ref|ZP_11342873.1| GAF sensor hybrid histidine kinase [Glaciecola arctica BSs20135]
gi|410148209|dbj|GAC19740.1| GAF sensor hybrid histidine kinase [Glaciecola arctica BSs20135]
Length = 683
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 23/157 (14%)
Query: 51 DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110
D V + K L L VL+VED + Q + MLK+ +V DG +EA+ +
Sbjct: 546 DSSIFVSKPKDLSHLRVLVVEDNEINQVVIGEMLKQRQITYDIVNDG---LEALAI---- 598
Query: 111 AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
L H ET + + LILMDCQM +MDG +AT+ IR+L + T IPI
Sbjct: 599 ---------LEH----ETKLARTFSLILMDCQMPNMDGYEATQHIRQLSSPVAT---IPI 642
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
IA TA + +CF GM+ +L+KP ++ L + I
Sbjct: 643 IALTANAMSGEREKCFACGMNEYLSKPVEQSQLYSMI 679
>gi|417323449|ref|ZP_12109977.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
Length = 1051
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 932 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQRDGG------------- 974
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +AT+ IR EA ++ PIIA TA V D+ + CF
Sbjct: 975 -------FDIILMDCMMPVMDGFEATKQIRAYEASLGLEKT-PIIALTASVVDDDIQRCF 1026
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 1027 DSGMDAYVPKPVRKEKL 1043
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+V+D V Q+I K G + +GE AV+
Sbjct: 770 VLVVDDNTVNQKIAGLHATKAGFSFDVAANGEEAVDMF---------------------- 807
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y LILMDC M MDG +AT+ IR++E + IPIIA TA V D+ ++CF
Sbjct: 808 ---RTSQYCLILMDCMMPVMDGFEATKQIRQIELKENRTFRIPIIALTASVVDDDIQKCF 864
Query: 187 NSGMDTFLNKPAQEHLL 203
+ GMD ++ KP + LL
Sbjct: 865 DVGMDDYVPKPFKADLL 881
>gi|238922202|ref|YP_002935716.1| hypothetical protein EUBELI_20437 [Eubacterium eligens ATCC 27750]
gi|238873874|gb|ACR73582.1| Hypothetical protein EUBELI_20437 [Eubacterium eligens ATCC 27750]
Length = 734
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 26/153 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ G+ +LL ED + I +L GA VT+V DGE AV T
Sbjct: 607 ISGIKILLAEDNELNAEIAQTLLVDEGANVTVVSDGEQAVREFT---------------- 650
Query: 122 HGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+PH YD+ILMD M +DG AT+ IR +E IPIIA TA +
Sbjct: 651 -------RCAPHTYDVILMDIMMPKLDGIAATKAIRAMERP--DAVEIPIIAMTANAFEE 701
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ R+C +GM+ L+KP Q ++ I E R
Sbjct: 702 DARKCVEAGMNAHLSKPLQMDVVVGTIAEYYKR 734
>gi|348028736|ref|YP_004871422.1| multi-sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
gi|347946079|gb|AEP29429.1| multi-sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
Length = 782
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 28/212 (13%)
Query: 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEK 59
+ I ++ E K++ E G+ F VP + S+ + DD+
Sbjct: 591 LPISRKLVELMGGSVKVDSEFGVGSNFTINVPFGSIEKSNVSYSAMTNAETDDIN----Y 646
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
+ E L+ ED + Q + +L +L TL DGE A+E
Sbjct: 647 QAFENCHALVAEDNEINQVVIQNLLDQLKIKCTLAADGEEALEY---------------- 690
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
L + Y+ ILMDCQM +DG + TR+IR + + + ++IPIIA TA
Sbjct: 691 ------LHSDEGAQYNFILMDCQMPKLDGFETTRMIRE-DDKYQKVKNIPIIALTANAMK 743
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
++ +C +GM+ +L KP + LL+A+I+E +
Sbjct: 744 SDKEKCLRAGMNGYLAKPVTKALLSASIIELL 775
>gi|330841167|ref|XP_003292574.1| hypothetical protein DICPUDRAFT_89878 [Dictyostelium purpureum]
gi|325077170|gb|EGC30901.1| hypothetical protein DICPUDRAFT_89878 [Dictyostelium purpureum]
Length = 325
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
++G ++L+VED + + I ++ LKKLG VTL ++G
Sbjct: 7 IKGANILVVEDDPLNRIIALKFLKKLGHNVTLAENG-----------------------L 43
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H NL + N+ +DLILMD M MDG ++T+ IR E E+ G+ PII T +
Sbjct: 44 HAFNLVSCNT--FDLILMDVNMPVMDGKESTKKIR--EYESRVGKRTPIIGLTTMP---- 95
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK--FSCDEQAEAQDE 229
+ EC +GMD L KPA+ +LL + + +++ S E+ E E
Sbjct: 96 KDECIEAGMDDHLFKPAKFNLLDEKVTYYLKNQAYNQSISAPEKQEPSSE 145
>gi|358055967|dbj|GAA98312.1| hypothetical protein E5Q_04997 [Mixia osmundae IAM 14324]
Length = 1232
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 24/138 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E LL ED AV Q++ ++ L+ G +T+V++G AVEA+
Sbjct: 917 ESACCLLAEDNAVNQKVAVKFLESAGHKITIVENGALAVEAV------------------ 958
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
SP +D+ILMD M M G AT IRR E E ++ PIIA TA +
Sbjct: 959 -----KRRSPSFDVILMDVSMPVMSGLHATENIRRYEEENGLDRT-PIIALTAHAMLGDR 1012
Query: 183 RECFNSGMDTFLNKPAQE 200
+C ++GMD +L+KP ++
Sbjct: 1013 EKCLSAGMDDYLSKPLRK 1030
>gi|168015529|ref|XP_001760303.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688683|gb|EDQ75059.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 668
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 49 VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
+++ + +D K++++G VLL ED AV +++G R+L+ L VT+ +G+ A++ +
Sbjct: 418 LDEALPTLDGKELIQGKKVLLAEDDAVNRKVGQRLLRSLNCDVTVTCNGQEALDVLC--- 474
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS- 167
Q+ + +P +DL+LMD QM MDG A ++ R E E +
Sbjct: 475 -------QVPAWPELPTSDEVMTPRFDLVLMDLQMPVMDGTHAVQLFREWEELQEPPRKR 527
Query: 168 IPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ I A TA V+ + +C SG D F++KP
Sbjct: 528 MTIFALTANVSDRDMVKCAQSGFDEFVSKP 557
>gi|410635430|ref|ZP_11346044.1| GAF sensor hybrid histidine kinase [Glaciecola lipolytica E3]
gi|410145115|dbj|GAC13249.1| GAF sensor hybrid histidine kinase [Glaciecola lipolytica E3]
Length = 683
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 23/143 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+VED + Q + MLK+ +V DG VEA+ + L H
Sbjct: 560 LKILIVEDNEINQVVIAEMLKQQQITYEIVNDG---VEALAI-------------LKH-- 601
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
E + + LILMDCQM +MDG +A+ IR+L A T IPIIA TA A+ +
Sbjct: 602 --EAKYARFFSLILMDCQMPNMDGYQASLHIRQLPAPIST---IPIIALTANAMAEERGK 656
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
CF SGM+ +L+KP + L + I
Sbjct: 657 CFASGMNEYLSKPVDQKQLISMI 679
>gi|345873782|ref|ZP_08825674.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343916870|gb|EGV27696.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1100
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 34/199 (17%)
Query: 18 ELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVL 76
EL +G + P+ + AE S+ DD ++ G+ +LL ED +
Sbjct: 828 ELGYGSTFWVRVPLNTISQTTLSAEPSAPPTTTPDDTL----ERGYPGVRLLLAEDDPIN 883
Query: 77 QRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136
Q + +L++L V +V DG AV+ + + Y L
Sbjct: 884 QEVARELLRRLEIEVEVVNDGRQAVKRI-------------------------RTGEYAL 918
Query: 137 ILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196
+LMD QM MDG ATR IRRL +AE +PI+A TA ++ R+C +GM+ + K
Sbjct: 919 VLMDVQMPVMDGLAATRAIRRLHGKAE----LPILAMTASAFDEDRRKCLAAGMNDHITK 974
Query: 197 PAQEHLLAAAIVETIARKS 215
P L AA+ + R +
Sbjct: 975 PVTPAQLNAALSRWLPRPA 993
>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
Length = 984
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 45 SSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104
+S P N + K +L G +L+V+D V +R+ L K GA V V G A+ +
Sbjct: 824 NSSPRNGAIAKAKAKGLLRGKKILVVDDNVVNRRVAAGALNKFGAEVRCVGSGHEALACL 883
Query: 105 TLMINAAGKNHQIQNLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
+ PH +D MD QM MDG +ATR+IR +E++A+
Sbjct: 884 QI-------------------------PHDFDACFMDIQMPQMDGFEATRLIREMESKAK 918
Query: 164 TGQS-----------IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
G + +PI+A TA V EC GMD ++ KP +E L A+ +
Sbjct: 919 MGNNNKSDGIGEWRHMPILAMTADVIHATLDECLKCGMDGYVPKPFKEKSLYQAVAK 975
>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 842
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P G S+ TG + L G VLLVED + Q + +L +G + ++G
Sbjct: 682 PSISGISTLTAKTVGATGRSQSPPLSG-RVLLVEDHPINQEYAVELLNMIGITADIAENG 740
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
EA+T + KNH YD++LMDCQM MDG + IR
Sbjct: 741 R---EALTRL----AKNH------------------YDIVLMDCQMPVMDGYETAMAIRA 775
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
E + +PI+A TA +++ C +SGMD FL KP L A++ +
Sbjct: 776 AEQSHPGSRRLPIVALTANALPADQQRCMDSGMDDFLAKPFSIQQLYASLARWL 829
>gi|376295561|ref|YP_005166791.1| response regulator receiver sensor hybrid histidine kinase
[Desulfovibrio desulfuricans ND132]
gi|323458122|gb|EGB13987.1| response regulator receiver sensor hybrid histidine kinase
[Desulfovibrio desulfuricans ND132]
Length = 520
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 32/156 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ VL+ ED V +R +R+L+K+G V +DG AVE +
Sbjct: 394 LAGVRVLVAEDDMVNRRYLVRLLEKMGCAVDAAEDGLRAVEIL----------------- 436
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG---QSIPIIAFTALVT 178
+ H+D++LMD +M +DG +ATR IR ETG +PI+A TA
Sbjct: 437 --------QAAHFDIVLMDVEMPGLDGIEATRRIR----NPETGCLDPQVPIVALTARAM 484
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+E C ++GM+ ++ KP +AA I T+ ++
Sbjct: 485 WGDEERCLHAGMNEYVPKPVDVDTVAAIIQSTLKKE 520
>gi|406935479|gb|EKD69436.1| signal transduction histidine kinase [uncultured bacterium]
Length = 324
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 33/152 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKL-GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+LLVED ++ I +L + VT V++G AVEA++ KN
Sbjct: 186 ILLVEDNHSNAQVTIDLLTQFYNHSVTWVENGALAVEAIS-------KNS---------- 228
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
YD+ILMD QM MDG +ATR+IR+ G + P+IA TA + EC
Sbjct: 229 --------YDVILMDIQMPVMDGFEATRIIRK------NGVNTPVIALTAAIMPWAYEEC 274
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETI-ARKSH 216
NSGMD F++KP L I I RK+H
Sbjct: 275 LNSGMDAFISKPTGVKRLGLLIKNAIEKRKAH 306
>gi|407921335|gb|EKG14486.1| hypothetical protein MPH_08335 [Macrophomina phaseolina MS6]
Length = 357
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +L+ +D + + I +R++ K G V LV+DG +A++ +I ++ +
Sbjct: 221 GKQILIADDNEINRHIALRLISKRGFSVNLVEDGRSALD---FLIESSDNEWR------- 270
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR--LEAEAETGQSIPIIAFTALVTADN 181
DLILMD QM MDG +AT+ IR+ + + + IPIIA TA +
Sbjct: 271 ---------RPDLILMDLQMPRMDGYEATQAIRKGAMFDKMPWVRGIPIIAMTASAIPEE 321
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
E +C +SGM+ F+ KP + L +V+ +ARK
Sbjct: 322 EAKCRSSGMNDFILKPLRAESLDKIVVKWLARK 354
>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361336|ref|ZP_12961991.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687366|gb|EHI51948.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 890
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 28/150 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+GL +LL ED + Q++ + +L+ +GA V++ +G A
Sbjct: 545 FDGLRILLAEDNELNQQVAMELLRAVGADVSIAGNGAIA--------------------- 583
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
L+ YDLILMD QM MDG ATR +R+ E++ G IPI+A TA V A +
Sbjct: 584 ----LQMAAQQPYDLILMDMQMPVMDGLAATRQLRQQESD---GHQIPILAMTANVMAGD 636
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GMD + KP L AA+ +
Sbjct: 637 RERCLAAGMDDHIAKPIDPDKLYAALQRWV 666
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+V+D V +R+ LKK GA V + G+ A+ + +
Sbjct: 939 KSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 986
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E EA+ ++ PI+A
Sbjct: 987 -------------PHTFDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTNLEWHLPILAM 1033
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1034 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1071
>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
Length = 1027
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 37/175 (21%)
Query: 48 PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
P N + G+ K +L G +L+V+D +V + + LKK GAGV V G +EA+T++
Sbjct: 882 PRNGEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSG---IEAITML 938
Query: 108 INAAGKNHQIQNLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLE---AEAE 163
PH +D MD QM MDG +ATR IR +E + E
Sbjct: 939 ----------------------RPPHQFDACFMDIQMPEMDGFEATRRIREIENNVKDRE 976
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218
+PI+A TA V +EC GMD +++KP + E + R+ KF
Sbjct: 977 LFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFE--------AEQLYREVSKF 1023
>gi|317156487|ref|XP_001825779.2| two-component system protein B [Aspergillus oryzae RIB40]
gi|391865045|gb|EIT74336.1| sensory transduction histidine kinase [Aspergillus oryzae 3.042]
Length = 1091
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED + Q + +RML + VT+VKDG+ A + + N+ G
Sbjct: 959 IRVLMAEDNKINQEVALRMLALEEVYDVTVVKDGQEAYDTVK------------ANMEEG 1006
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DLI MD QM +DG ++TR+IR E G S PI+A +A N +
Sbjct: 1007 K--------VFDLIFMDIQMPILDGLQSTRLIR------EMGYSAPIVALSAFSEDSNIK 1052
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
+C +SGMD F++KP + +L
Sbjct: 1053 DCMDSGMDMFISKPIRRPIL 1072
>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
Length = 1499
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 35/180 (19%)
Query: 28 KPV---PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
KPV P+ N I+ + S P + E+ +L+VED V Q++ + ML
Sbjct: 624 KPVQQSPLYNAIVTTVKQSGKGQP--ELPLAAMEEPSFANRYILVVEDNRVNQQVAVGML 681
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
K+ G V + +G+ EA+ L+ + YDL+LMDC M
Sbjct: 682 KRFGCHVEVAANGQ---EALDLVARKS----------------------YDLVLMDCHMP 716
Query: 145 SMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
MDG +ATR IR LEA G+ +PIIA TA V + +C + GM+ +L KP + +LL
Sbjct: 717 RMDGYEATRRIRSLEA----GKVQVPIIAMTANVREGDSDKCLSVGMNDYLPKPLRLNLL 772
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
DL+LMD M +DG KA IR + T P++ TAL + + F++G ++
Sbjct: 970 DLVLMDAVMPLLDGFKACTQIRDMPGSRHT----PVLIITALDDEHSIEQAFSAGATDYI 1025
Query: 195 NKP 197
KP
Sbjct: 1026 PKP 1028
>gi|238492277|ref|XP_002377375.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Aspergillus flavus NRRL3357]
gi|220695869|gb|EED52211.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Aspergillus flavus NRRL3357]
Length = 1091
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED + Q + +RML + VT+VKDG+ A + + N+ G
Sbjct: 959 IRVLMAEDNKINQEVALRMLALEEVYDVTVVKDGQEAYDTVK------------ANMEEG 1006
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DLI MD QM +DG ++TR+IR E G S PI+A +A N +
Sbjct: 1007 K--------VFDLIFMDIQMPILDGLQSTRLIR------EMGYSAPIVALSAFSEDSNIK 1052
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
+C +SGMD F++KP + +L
Sbjct: 1053 DCMDSGMDMFISKPIRRPIL 1072
>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
Length = 1047
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 37/175 (21%)
Query: 48 PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
P N + G+ K +L G +L+V+D +V + + LKK GAGV V G +EA+T++
Sbjct: 902 PRNGEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSG---IEAITML 958
Query: 108 INAAGKNHQIQNLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLE---AEAE 163
PH +D MD QM MDG +ATR IR +E + E
Sbjct: 959 ----------------------RPPHQFDACFMDIQMPEMDGFEATRRIREIENSVKDRE 996
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218
+PI+A TA V +EC GMD +++KP + E + R+ KF
Sbjct: 997 LFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFE--------AEQLYREVSKF 1043
>gi|357633780|ref|ZP_09131658.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357582334|gb|EHJ47667.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 814
Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G D K L G +LLVED A+ +++ L++ GA V + + G AVE M+ A
Sbjct: 298 GTDTAKPLAGTLILLVEDNAINRQVARDTLQRFGASVDVARHGGEAVE----MVKVA--- 350
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
YD +LMD QM MDG ATR+IR L G +PI+A T
Sbjct: 351 ------------------FYDAVLMDVQMPVMDGLTATRLIRALPG----GPDLPIVALT 388
Query: 175 ALVTADNERECFNSGMDTFLNKP 197
A A++ C +GM+ +L KP
Sbjct: 389 AHALAEDRDRCLEAGMNDYLTKP 411
Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLV+D + + I ++L+ G V +G+ A A+ A G+
Sbjct: 582 ILLVDDAKLNRAIFSQILRSAGHDVATAANGKEACRAL-FGEKATGRP------------ 628
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRL---EAEAETGQSIPIIAFTALVTADNER 183
YDLILMD +M MDG ATRVIR L A IPI+A T+ AD ER
Sbjct: 629 -------YDLILMDIEMPEMDGPAATRVIRGLLSASASPPCPPGIPIVALTSH-DADGER 680
Query: 184 -ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GMD L K + L ++ + +
Sbjct: 681 ARCLEAGMDECLPKLFEHDALLDSLAQVM 709
>gi|398820841|ref|ZP_10579346.1| PAS domain S-box [Bradyrhizobium sp. YR681]
gi|398228503|gb|EJN14620.1| PAS domain S-box [Bradyrhizobium sp. YR681]
Length = 741
Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 60/167 (35%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 48 PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
PV+ V G K GLSVL+ ED + + +L KLG + GEAA+E+ L
Sbjct: 596 PVDAAVIGAPAK----GLSVLVAEDNEINALLMRSLLTKLGHRAVIAVHGEAALESW-LA 650
Query: 108 INAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS 167
++AG +P YDL+LMD QM +DG +AT+ IR EA A GQ
Sbjct: 651 ASSAG------------------TP-YDLVLMDIQMPRLDGIEATKRIRAHEA-ATGGQH 690
Query: 168 IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
PI+A TA ++ CF +GM+ FL KP L A+ A +
Sbjct: 691 TPILALTANTLVEDRYACFEAGMNGFLIKPLDRDKLDEALAGLAASR 737
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+V+D V +R+ LKK GA V + G+ A+ + +
Sbjct: 916 KSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 963
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E EA+ ++ PI+A
Sbjct: 964 -------------PHTFDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTNLEWHLPILAM 1010
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1011 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1048
>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas
campestris pv. campestris str. B100]
gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas
campestris pv. campestris]
Length = 767
Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ +M
Sbjct: 499 ILLVEDNPVNLLVAQKLLGVLGFEADTATDGEAALSSM---------------------- 536
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A + C
Sbjct: 537 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRERCL 592
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 593 AAGMDDYLSKPVAREQLNACLQRWLPRQA 621
>gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 976
Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 75/156 (48%), Gaps = 28/156 (17%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L L VLL ED V Q++ I +L++ G VT V +G A+ A+
Sbjct: 706 KTLRPLKVLLAEDNPVNQKVAILILERSGHKVTGVNNGAQALRAV--------------- 750
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
YD++LMD QM MDG ++TR IR LEA IPI+A TA A
Sbjct: 751 ----------QEGDYDIVLMDMQMPEMDGLESTRRIRALEAPV---AQIPILALTANALA 797
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD F+ KP Q LLA+ I +A K+
Sbjct: 798 AEFERCMEAGMDGFVTKPFQIELLASEIARVLAEKT 833
>gi|449303308|gb|EMC99316.1| hypothetical protein BAUCODRAFT_146280 [Baudoinia compniacensis UAMH
10762]
Length = 1189
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 25/149 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED V Q + +RMLK + VT+ KDG+ A++ +
Sbjct: 999 IRVLVAEDNKVNQEVVLRMLKLEDIYDVTVAKDGQEALDRVR------------------ 1040
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+++ N Y+LI MD QM ++DG +TR+IR E G PI+A TA N +
Sbjct: 1041 ESMDGPNGQPYNLIFMDVQMPNVDGLTSTRLIR------EIGYQAPIVALTAFAEESNIK 1094
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+C+ SGM+ FL+KP + L + E A
Sbjct: 1095 DCYESGMNYFLSKPIRRPQLKKVLKEYCA 1123
>gi|407685282|ref|YP_006800456.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
gi|407246893|gb|AFT76079.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
Length = 702
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 23/142 (16%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
+ K+ L L+VED + Q + LK++G L ++GE AVE
Sbjct: 555 IPSKQELSAFKALIVEDNEINQLVIKEQLKEIGITADLAENGEEAVE------------- 601
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
++Q+ G SP Y +ILMDC M MDG +AT++IR + + + IPIIA TA
Sbjct: 602 KVQDALKG------KSP-YTIILMDCHMPVMDGLEATKLIRSM---GDKARDIPIIALTA 651
Query: 176 LVTADNERECFNSGMDTFLNKP 197
++ +C SGMD F++KP
Sbjct: 652 NALTGDKEKCLKSGMDDFISKP 673
>gi|378733369|gb|EHY59828.1| hpt sensor hybrid histidine kinase [Exophiala dermatitidis
NIH/UT8656]
Length = 1454
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 14/191 (7%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEG-LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
P G SS V T V G +L+VED V Q+I +R +K LG + V +
Sbjct: 1002 PSVTGGSSPALVPSSATETSMSDVQRGQYHILVVEDNPVNQQIALRFIKALGFSASAVWN 1061
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G+ A+E + ++ + Q Q P LILMD QM +DG + T ++R
Sbjct: 1062 GKEALEYLLKATSSDMTSEQAQAY-----------PMPSLILMDVQMPVLDGYRTTHMMR 1110
Query: 157 RLEAEAETG--QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
IP++A TA + +C +GMD ++ KP + LL I++ I
Sbjct: 1111 YHAPFTSIPVISRIPVVAMTASAIHGDREKCEKAGMDDYMAKPVKRTLLEQKIMKWIYTG 1170
Query: 215 SHKFSCDEQAE 225
+ DE+AE
Sbjct: 1171 RDSNASDEKAE 1181
>gi|345873778|ref|ZP_08825671.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343916883|gb|EGV27708.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1230
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 51 DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110
D D K+ G +LLVED + + + + ++ L V ++G A+E + L
Sbjct: 1092 DQAIQADAKRSCAGRRLLLVEDDPINREVTLGLIAGLNLSVDAAENGAEALEFVRL---- 1147
Query: 111 AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
YDLILMD QM MDG +ATR IR+L AE +P+
Sbjct: 1148 ---------------------NRYDLILMDVQMPVMDGLEATRQIRKLPQAAE----VPV 1182
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+A TA V A++ +C +GM FL KP + L A + +AR S
Sbjct: 1183 VALTANVFAEDREQCLEAGMSDFLVKPIEPGRLMAVLQCWLARPSQ 1228
>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 847
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q + + +L+ LG + +G A+ AM
Sbjct: 728 ILVVEDGEINQLVAVGILEHLGYTTDVADNGVTALSAM---------------------- 765
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YD +LMD QM MDG +ATR IRRLE + PIIA TA T D+ C
Sbjct: 766 ---GRTRYDAVLMDVQMPGMDGYQATREIRRLEGDV---HHTPIIAMTASATNDDRDRCL 819
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD +++KP H L +
Sbjct: 820 AAGMDDYISKPVNPHTLETVL 840
>gi|384429644|ref|YP_005639004.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
gi|341938747|gb|AEL08886.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
Length = 767
Score = 76.3 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V + ++L LG DGEAA+ +M
Sbjct: 499 ILLVEDNPVNLLVAQKLLGVLGFEADTATDGEAALSSM---------------------- 536
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A + C
Sbjct: 537 ---ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRERCL 592
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GMD +L+KP L A + + R++
Sbjct: 593 AAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|333995923|ref|YP_004528536.1| sensory box histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
gi|333736394|gb|AEF82343.1| sensory box histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
Length = 768
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S S P+ D VL G VLLVED + I + +L +G V ++G+ EA
Sbjct: 619 SCSFPLAGDGAADTRNAVLHGARVLLVEDNEINVMIVMELLNTVGMEVATAQNGK---EA 675
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
+ ++ +AA +TH P +D++LMD QM MDG +ATR+IR E
Sbjct: 676 LDVLADAA---------------KTHGLPPFDVVLMDLQMPVMDGYEATRIIR----EMP 716
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+PI A TA + C GM L KP L +A+ +A K
Sbjct: 717 EYNDMPIYALTAHAFPEERERCLRLGMKDHLTKPIDVDLFYSALRNAVASK 767
>gi|83772706|dbj|BAE62834.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1362
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1120 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1169
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ K H+ YD+ILMD QM M
Sbjct: 1170 NHKVSVVSNGLEAVEAV--------KQHR-----------------YDVILMDVQMPVMG 1204
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1205 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1262
Query: 207 IVE 209
I++
Sbjct: 1263 ILK 1265
>gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 797
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V + I +L+ LG V DGE AV A
Sbjct: 528 VLLVEDNEVNREISGAILESLGCAVDFAHDGEQAVSA----------------------- 564
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S Y +ILMDCQM +DG ATR IR E A + +PIIA TA A + C
Sbjct: 565 --RRSGSYQVILMDCQMPVLDGFAATRQIRAEERAAGRAE-VPIIALTANALAGDRELCL 621
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
N+GM+ +L KP L AA+ +
Sbjct: 622 NAGMNDYLAKPINRAQLTAALARYL 646
>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 951
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 26/142 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + ML+ G V++ +G A++ MT
Sbjct: 673 VLLVEDNPVNQDVATAMLECSGCRVSVANNGAEALDVMT--------------------- 711
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
+DLI MDCQM MDG ATR IR+ E ++ G IIA TA + EC
Sbjct: 712 ----RRRFDLIFMDCQMPVMDGYAATRAIRQCEGNSQAGSGRRTIIALTAHAMRGDREEC 767
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
F +GMD +L KP + L A +
Sbjct: 768 FAAGMDDYLTKPFTQAQLVAVL 789
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+ H + E SP YDL ++D M M+G + R I+ A + Q+ ++ T++
Sbjct: 565 MRHAARAE---SP-YDLAILDMLMPEMNGIELARAIK---ANPDLAQT-RLLMVTSVGQY 616
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+E E +G+ +++KP ++ L +AI++ +
Sbjct: 617 GDEAEAVKAGIGCYISKPVRQSRLYSAIIDLL 648
>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
Length = 1028
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 29/138 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +L+VED+A+ + I + +L + G ++G AVE + +IQ
Sbjct: 906 LRGRHLLVVEDEAINREIALELLGEFGITADTAENGRHAVELI-----------KIQ--- 951
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
HYDL+LMD QM MDG +ATR IR L + ++PIIA TA A++
Sbjct: 952 -----------HYDLVLMDMQMPEMDGLEATRRIRALPEQ----NAVPIIAMTANAFAED 996
Query: 182 ERECFNSGMDTFLNKPAQ 199
C +GM+ FL+KP +
Sbjct: 997 RERCIKAGMNDFLSKPVE 1014
>gi|410862181|ref|YP_006977415.1| diguanylate cyclase [Alteromonas macleodii AltDE1]
gi|410819443|gb|AFV86060.1| GGDEF domain protein [Alteromonas macleodii AltDE1]
Length = 1351
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 22/166 (13%)
Query: 32 VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
V N I +A+ S PV + EGL VLLVED A+ Q + +L+ G V
Sbjct: 1193 VPNEIEHKADDFGRSAPVEEASHNATPHNSPEGLRVLLVEDNAINQLVATTILEGEGLTV 1252
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
+ +G+ A+ + + + Y L++MDCQM MDG +
Sbjct: 1253 DVANNGKEALAFLQ---------------------QPQQAKPYSLVVMDCQMPEMDGFET 1291
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
T+ IR A A QSIPI+A TA ++ +C SGM+ FL KP
Sbjct: 1292 TKHIRSGAAGAHY-QSIPIVAITANAMQSDKDKCLQSGMNDFLTKP 1336
>gi|325915224|ref|ZP_08177547.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
35937]
gi|325538584|gb|EGD10257.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
35937]
Length = 765
Score = 76.3 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 26/150 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ +M
Sbjct: 495 MRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSSM-------------------- 534
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A +
Sbjct: 535 -----ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRER 588
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
C +GMD +L+KP L A + + R+
Sbjct: 589 CLAAGMDDYLSKPVAREQLDACLQRWLPRQ 618
>gi|317150360|ref|XP_001823967.2| histidine kinase J7 [Aspergillus oryzae RIB40]
Length = 1304
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1081 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1130
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ K H+ YD+ILMD QM M
Sbjct: 1131 NHKVSVVSNGLEAVEAV--------KQHR-----------------YDVILMDVQMPVMG 1165
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1166 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1223
Query: 207 IVE 209
I++
Sbjct: 1224 ILK 1226
>gi|390948848|ref|YP_006412607.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425417|gb|AFL72482.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1091
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED+ + + + +L LG V + +DG AVE
Sbjct: 969 GRRILLVEDEPINREVARMLLDDLGMIVEMAEDGAQAVELACRY---------------- 1012
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDLILMD QM ++DG +ATR IR+ + +PI+A TA AD++
Sbjct: 1013 ---------DYDLILMDMQMPNLDGLEATRRIRQWPDRS----LVPILALTANAFADDKA 1059
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
CF +GM+ F+ KP +L AA++ +A+
Sbjct: 1060 RCFAAGMNDFIAKPIDPEVLFAALLTWLAK 1089
>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
Length = 770
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 38/206 (18%)
Query: 27 FKPVPVTN--NIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
KPV + +I QA G+ S+ +G ++ K+++ + VL+ ED Q + RML
Sbjct: 597 LKPVRADDLRGVISQALGAGSAVE-ERAPSGSEDAKIMQRIKVLMAEDNRTNQVVVTRML 655
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
K + + +G+ A+E + P D+ILMD M
Sbjct: 656 KSESVDIIIASNGQEAIE-----------------------MYLRERP--DVILMDMMMP 690
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
MDG AT+ IR++E E Q +PIIA TA +E C GMD FL+KP ++ L
Sbjct: 691 VMDGLDATKAIRKIENETGVRQ-VPIIALTANALQSHEEACLEVGMDDFLSKPIRKQALL 749
Query: 205 AAIVETIARKSHKFSCD-EQAEAQDE 229
A+ H+++ D + AE Q++
Sbjct: 750 DAL--------HQWTEDRDSAEPQNK 767
>gi|139438083|ref|ZP_01771636.1| Hypothetical protein COLAER_00624 [Collinsella aerofaciens ATCC
25986]
gi|133776280|gb|EBA40100.1| response regulator receiver domain protein [Collinsella aerofaciens
ATCC 25986]
Length = 641
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 75/155 (48%), Gaps = 26/155 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+GL VLLVED + I L + GA VT KDGE+AVEA
Sbjct: 512 LQGLRVLLVEDNDLNAEIAQFTLSRAGAVVTHAKDGESAVEAF----------------- 554
Query: 122 HGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
++PH YD++LMD M +DG +ATR IR L + E + PIIA +A AD
Sbjct: 555 ------AASAPHEYDVVLMDIMMPGIDGLEATRQIRAL--DREDAATTPIIAVSANAFAD 606
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ + +GM+ L+KP L A+ A S
Sbjct: 607 DRKLSREAGMNAHLSKPVSSQELVEALAHIAADAS 641
>gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
Length = 1351
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 22/166 (13%)
Query: 32 VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
V N I +A+ S PV + EGL VLLVED A+ Q + +L+ G V
Sbjct: 1193 VPNEIEHKADDFGRSAPVEEASHNATPHNSPEGLRVLLVEDNAINQLVATTILEGEGLTV 1252
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
+ +G+ A+ + + + Y L++MDCQM MDG +
Sbjct: 1253 DVANNGKEALAFLQ---------------------QPQQAKPYSLVVMDCQMPEMDGFET 1291
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
T+ IR A A QSIPI+A TA ++ +C SGM+ FL KP
Sbjct: 1292 TKHIRSGAAGAHY-QSIPIVAITANAMQSDKDKCLQSGMNDFLTKP 1336
>gi|440469512|gb|ELQ38620.1| sensor protein zraS [Magnaporthe oryzae Y34]
gi|440487217|gb|ELQ67021.1| sensor protein zraS [Magnaporthe oryzae P131]
Length = 1994
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VLLVED + Q++ I+ LKK+G V + +DGE E +
Sbjct: 1869 GLRVLLVEDNPINQKVLIKYLKKVGVAVEVARDGEECTEMVF------------------ 1910
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
H ++ LIL D M DG A R +R+ E + G +PIIA +A V AD +
Sbjct: 1911 ----GHGPGYFALILCDLHMPKKDGYTACREVRQWEQQTPDGPKLPIIALSANVMADVQE 1966
Query: 184 ECFNSGMDTFLNKP 197
C +G D ++ KP
Sbjct: 1967 RCIQAGFDAYVTKP 1980
>gi|407701521|ref|YP_006826308.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407250668|gb|AFT79853.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 702
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 23/163 (14%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D + +K L L+VED + Q + LK++G L ++GE AV + A+
Sbjct: 551 DPVYIPSRKELSAFKALIVEDNEINQLVIKEQLKEVGLSADLAENGEEAVNK----VKAS 606
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
K NSP Y +ILMDC M MDG +ATR IR A E + +PII
Sbjct: 607 LK---------------ENSP-YAIILMDCHMPVMDGLEATRHIR---AMGEETRDVPII 647
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
A TA ++ +C SGMD F++KP L I + ++++
Sbjct: 648 ALTANALTGDKEKCLKSGMDDFISKPVGVSRLKECIYKHLSKQ 690
>gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC
30864]
Length = 1432
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK--------N 114
L +L+VED + Q++ ML+K G + +G+ EA+ L++ A+
Sbjct: 1211 RSLKLLVVEDNLINQKVVCTMLRKAGYRFDVAVNGQ---EAVDLVVAASAHLEGLAQAGE 1267
Query: 115 HQIQNLHHGSNLET--HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG--QSIPI 170
H ++ L + H P YDLILMDCQM +DG +AT +R+LE + T + +PI
Sbjct: 1268 HVLELLDSAETPSSAQHWCP-YDLILMDCQMPVLDGYEATMALRKLETKYRTKGVRQLPI 1326
Query: 171 IAFTALVTADNERECFNSGMDTFLNKP 197
IA TA + CF GM +++KP
Sbjct: 1327 IAMTAEALPQDRARCFECGMTGYISKP 1353
>gi|156845690|ref|XP_001645735.1| hypothetical protein Kpol_1043p68 [Vanderwaltozyma polyspora DSM
70294]
gi|156116402|gb|EDO17877.1| hypothetical protein Kpol_1043p68 [Vanderwaltozyma polyspora DSM
70294]
Length = 1042
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 26/149 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
++ +L+VED V Q + IRMLK G T+ DG+ AVE K +IQ+
Sbjct: 914 VKNFKLLIVEDNKVNQLVVIRMLKLEGIENFTIACDGQEAVE----------KIKEIQS- 962
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+Y L+LMD QM +DG AT++IR+ E PI+A TA
Sbjct: 963 ---------RGEYYGLVLMDIQMPKVDGITATKIIRQ-----ELKYDKPIVALTAFADDS 1008
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVE 209
N + C+ SGMD FL KP + L + E
Sbjct: 1009 NIQACYKSGMDGFLAKPIKREQLKGILTE 1037
>gi|389623389|ref|XP_003709348.1| sensor protein zRas [Magnaporthe oryzae 70-15]
gi|351648877|gb|EHA56736.1| sensor protein zRas [Magnaporthe oryzae 70-15]
Length = 1994
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VLLVED + Q++ I+ LKK+G V + +DGE E +
Sbjct: 1869 GLRVLLVEDNPINQKVLIKYLKKVGVAVEVARDGEECTEMVF------------------ 1910
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
H ++ LIL D M DG A R +R+ E + G +PIIA +A V AD +
Sbjct: 1911 ----GHGPGYFALILCDLHMPKKDGYTACREVRQWEQQTPDGPKLPIIALSANVMADVQE 1966
Query: 184 ECFNSGMDTFLNKP 197
C +G D ++ KP
Sbjct: 1967 RCIQAGFDAYVTKP 1980
>gi|239908296|ref|YP_002955037.1| chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1]
gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
magneticus RS-1]
Length = 1516
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 26/153 (16%)
Query: 47 CPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
CP+++ + + ++LL ED V + + RML+K G +TLV++G A+EA+ +
Sbjct: 1374 CPIDNSPDLTRSQNLKMTFNILLAEDDNVNRLVAQRMLEKAGCTITLVENGRQAIEALRV 1433
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
GS +D ILMD QM MDG AT IR EA E +
Sbjct: 1434 ----------------GS---------FDAILMDVQMPVMDGVAATTAIRNGEAGKEHTR 1468
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQ 199
IPIIA TA + + + SGMD +++KP +
Sbjct: 1469 -IPIIAMTAYTMSGDREKFLASGMDGYISKPLE 1500
>gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
Length = 863
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L++ G + +G+ AV+ +T
Sbjct: 742 ILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVIT--------------------- 780
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG ATR IR+ E + + +PIIA TA V ++ + CF
Sbjct: 781 ---QGAQFDAILMDCMMPVMDGITATRAIRQWETDQQAA-PLPIIALTASVLEEDIKHCF 836
Query: 187 NSGMDTFLNKPAQEHLL 203
+GM+ +L KP + H L
Sbjct: 837 EAGMNAYLPKPYKSHQL 853
>gi|421994880|emb|CCM66045.1| two-component signaling kinase TcsC [Aspergillus terreus]
Length = 1348
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V QR+ +++L+K
Sbjct: 1124 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQRLAVKILEKH 1173
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1174 NHNVSVVSNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1208
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1209 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1266
Query: 207 IVE 209
I++
Sbjct: 1267 ILK 1269
>gi|429858660|gb|ELA33473.1| histidine kinase hhk6p [Colletotrichum gloeosporioides Nara gc5]
Length = 1407
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 30/170 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED A+ Q+I + + KLG VT +G+ A+E M AA K+ +
Sbjct: 1124 VLVVEDNAINQQIATKTIMKLGFKVTAAWNGKDALEYM-----AAAKDGK---------- 1168
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H P D+ILMD QM +DG K T ++R + IPI+A TA ++ +C
Sbjct: 1169 --HAKP--DIILMDVQMPVIDGYKCTHLLRHHVPYKAYMRDIPIVAMTASAIQGDKEKCT 1224
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE-TIARK----SHKFS------CDEQAE 225
+GMD +L+KP + L +V ++A++ +HK S C + AE
Sbjct: 1225 KAGMDDYLSKPVKSKTLERMLVRWSLAKRQQGTTHKASDGSLSDCSDTAE 1274
>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
autotrophicum HRM2]
gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
autotrophicum HRM2]
Length = 1316
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 29/166 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+GL +L+VED Q + + +LKK+G V +G A+EA+
Sbjct: 1054 KGLRILVVEDNITNQLVALGILKKMGFAAHAVTNGAKAIEAL------------------ 1095
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+ HYDL+ MD QM M+G ATR IR +++ IPI+A TA ++
Sbjct: 1096 ------DGATHYDLVFMDMQMPVMNGLDATRAIRDPDSKV-YDHDIPIVAMTANAMEEDR 1148
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQD 228
+ C +GM+ +L+KP +A+V+ + + DE + ++D
Sbjct: 1149 KHCLKAGMNDYLSKPIN----PSALVKVLEKWLVNLEKDEISPSED 1190
>gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
MWYL1]
gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
MWYL1]
Length = 601
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
+ EG S P+ + + + L +LLVED V Q I + KLG V L + G
Sbjct: 452 EVEGQKLSTPMENIAV---QSNIESDLCILLVEDNKVNQMICEQFFLKLGCSVDLAETGV 508
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
A+E + + YD+I MDC M MDG T IRR+
Sbjct: 509 MALEKF------------------------NGTKKYDVIFMDCNMPEMDGFSTTVAIRRI 544
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
E E Q IPI+A TA +R+C +SGM+ F++KP
Sbjct: 545 EKERGLKQ-IPIVALTAHAEDKIKRQCLDSGMNAFISKP 582
>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
Length = 1480
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 28/155 (18%)
Query: 54 TGVDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
TGV + + +GL VLLVED A+ + + +L+ +G + ++G+ AVE + AA
Sbjct: 1134 TGVAQPRTRWDGLRVLLVEDDAINREVAQALLQDVGLEADMAENGKIAVE----RVQAA- 1188
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
Y LILMD QM MDG +ATR IR L+A G++IPI+A
Sbjct: 1189 ------------------PARYALILMDVQMPEMDGLEATRRIRALDA----GENIPIMA 1226
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
TA A++ C +GM+ F+ KP L AA+
Sbjct: 1227 MTANAFAEDRSACREAGMNDFVAKPVDPDQLFAAL 1261
>gi|308125824|ref|ZP_07663531.1| signal transduction histidine kinase [Vibrio parahaemolyticus
K5030]
gi|308111583|gb|EFO49123.1| signal transduction histidine kinase [Vibrio parahaemolyticus
K5030]
Length = 231
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ +L K G + ++G+ AVE M G
Sbjct: 112 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVE----MFQRDG-------------- 153
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M MDG +AT+ IR EA ++ PIIA TA V D+ + CF
Sbjct: 154 ------GFDIILMDCMMPVMDGFEATKQIRAYEASLGLEKT-PIIALTASVVDDDIQRCF 206
Query: 187 NSGMDTFLNKPAQEHLL 203
+SGMD ++ KP ++ L
Sbjct: 207 DSGMDAYVPKPVRKEKL 223
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT+ IR++E + IPIIA TA V D+ ++CF+ GMD ++ KP + L
Sbjct: 1 MPVMDGFEATKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKADL 60
Query: 203 L 203
L
Sbjct: 61 L 61
>gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 877
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G D ++ GL VLL ED QR+ + +L+++G V DG A+ A+
Sbjct: 629 GDDAPELPRGLRVLLAEDNRANQRLMMSLLERMGLSVRCASDGAEALRAL---------- 678
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+D++ MD QM +MDG + TR R E E TG+ II T
Sbjct: 679 ---------------EEETFDMVFMDVQMPAMDGLEVTRRFR--EMERGTGRRTLIIGLT 721
Query: 175 ALVTADNERECFNSGMDTFLNKP 197
A + D+ R C +GMD FL KP
Sbjct: 722 AFSSPDDRRACVEAGMDRFLAKP 744
>gi|254443113|ref|ZP_05056589.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198257421|gb|EDY81729.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 601
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 35/161 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ +LKKLGA V +G+ AVE L G+
Sbjct: 474 VLVVEDDLVNQKVVTALLKKLGAKTVCVDNGKKAVEI----------------LRPGA-- 515
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMD M MDG +AT IR+ +A + +PI+A TA + +E+ CF
Sbjct: 516 -------FDLVLMDISMPVMDGIEATEEIRKNDAL----KDLPIVALTAHSYSKSEKACF 564
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
+GM+ FL KPA+ L I + I +K E AEA+
Sbjct: 565 EAGMNGFLTKPAKADQLFEIISKLIGKKP------ESAEAR 599
>gi|428220130|ref|YP_007083602.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena sp.
PCC 7367]
gi|427992473|gb|AFY72166.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena sp.
PCC 7367]
Length = 1081
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VLLVED V Q++ + L++LG VT V DG+ A+ A+ AG + N+ +
Sbjct: 925 IRVLLVEDNPVNQKVARKQLERLGYEVTCVDDGQKALVALI----PAGYANLDTNIEAKA 980
Query: 125 N-----LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP----IIAFTA 175
+ P +D++LMDCQM +DG +ATR +R E E Q +P ++ TA
Sbjct: 981 REGVGAIANLPPPEFDVVLMDCQMPRLDGYEATRRLRAWE-EQLYRQHVPRHMVVVGLTA 1039
Query: 176 LVTADNERECFNSGMDTFLNKP 197
+ +C +GMD +L+KP
Sbjct: 1040 NAMKGDREKCLAAGMDDYLSKP 1061
>gi|380494702|emb|CCF32956.1| hsp90-like protein [Colletotrichum higginsianum]
Length = 1133
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+VED A+ Q+I + + KLG VT +G+ A+E M AA + +
Sbjct: 844 IRVLVVEDNAINQQIATKTIMKLGFSVTATWNGKEALEYM-----AAARQGK-------- 890
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
H P D+ILMD QM +DG K T ++R Q IPI+A TA ++ +
Sbjct: 891 ----HAKP--DIILMDVQMPVIDGYKCTHLLRHHVPYKAYVQDIPIVAMTASAIQGDKEK 944
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIV 208
C +GMD +L KP + L +V
Sbjct: 945 CTRAGMDDYLAKPVKSKTLERMLV 968
>gi|378729814|gb|EHY56273.1| hypothetical protein HMPREF1120_04360 [Exophiala dermatitidis
NIH/UT8656]
Length = 1338
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 36/179 (20%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
+ + N +IP EG S+ P+ D + L+VLL ED V Q++ I++L+K
Sbjct: 1101 IDLGNCMIPALEGRST--PIIKDYK--------KSLNVLLAEDNEVNQKVAIKILEKYNH 1150
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
VT+V +G AV A+ + +D++LMD QM M G
Sbjct: 1151 VVTVVGNGLEAVNAI-------------------------KADRFDVVLMDVQMPVMGGF 1185
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+ATR IR+ E E ++ PIIA TA + +C + MD +L+KP +++LL I+
Sbjct: 1186 EATREIRQYEKEMGLPRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNLLMQTIL 1243
>gi|347757673|ref|YP_004865235.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
gi|347590191|gb|AEP09233.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
Length = 1341
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 73/163 (44%), Gaps = 30/163 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q + + ML G +V +G AV M
Sbjct: 1075 VLVVEDNQVNQEVMVAMLDHYGIRSAVVDNGRDAVRIM---------------------- 1112
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+ MDCQM MDG +ATR +R+ + GQ I IIA TA + +C
Sbjct: 1113 ---REQDFDLVFMDCQMPIMDGYEATRTVRK----EKGGQDIKIIAMTANAMKGDREKCI 1165
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIA-RKSHKFSCDEQAEAQD 228
+GMD +L+KP E L A + IA K K D A+A +
Sbjct: 1166 AAGMDDYLSKPVVEKDLEAILATWIAEEKRTKRDEDGDADADN 1208
>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
Length = 968
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 26/145 (17%)
Query: 53 VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
V+ ++++++ +LLVED V Q +++L LG + L +G VEA+
Sbjct: 678 VSTLEQQQITLQGKILLVEDHPVNQEFAMQILSGLGVDLHLAGNG---VEAL-------- 726
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
K + QN YDL+LMDCQM MDG +AT +IR+ E E + + +PIIA
Sbjct: 727 KQLKEQN--------------YDLVLMDCQMPVMDGYRATELIRQKEQENGSPR-LPIIA 771
Query: 173 FTALVTADNERECFNSGMDTFLNKP 197
TA ++ + C ++GMD +L+KP
Sbjct: 772 LTANAMIEDRQRCISAGMDDYLSKP 796
>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
265]
gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
265]
Length = 869
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 26/137 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VL+VED V Q++ + ML+KLG + G A+E M
Sbjct: 611 GLVVLIVEDSPVNQQVAVAMLRKLGCEPDVASGGREALELM------------------- 651
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD++ MDCQM MDG +AT IR + ++ +++P++A TA V +
Sbjct: 652 ------RTTAYDMVFMDCQMPEMDGYEATGRIRS-GSGMKSSRNVPVVAMTANVMKGDRE 704
Query: 184 ECFNSGMDTFLNKPAQE 200
C SGMD ++ KP Q+
Sbjct: 705 RCIASGMDDYIAKPLQK 721
>gi|391869340|gb|EIT78539.1| HAMP domain protein [Aspergillus oryzae 3.042]
Length = 1294
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1071 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1120
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ K H+ YD+ILMD QM M
Sbjct: 1121 NHKVSVVSNGLEAVEAV--------KQHR-----------------YDVILMDVQMPVMG 1155
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1156 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1213
Query: 207 IVE 209
I++
Sbjct: 1214 ILK 1216
>gi|148254922|ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146407095|gb|ABQ35601.1| putative sensor histidine kinase with a response regulator receiver
domain [Bradyrhizobium sp. BTAi1]
Length = 729
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 81/182 (44%), Gaps = 40/182 (21%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
I+P E S P N E L VL+ ED Q + ++L KLG G +V
Sbjct: 583 IVPVGESVSEERPAN-----------FEPLKVLVAEDNLTNQFVIKKLLDKLGHGYDIVD 631
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
+G A+ AA + H YDL+LMD M MDG ATR+I
Sbjct: 632 NGTQAI--------AAVQKHA-----------------YDLVLMDMMMPEMDGLTATRMI 666
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
R L A + I IIA TA T+ + C ++GM+ F+ KP L AA++ A K
Sbjct: 667 RSLPPPA---RDIYIIALTANATSQDHLACTDAGMNDFVTKPVTRDRLNAALLRATAAK- 722
Query: 216 HK 217
HK
Sbjct: 723 HK 724
>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
Length = 588
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 1 MSIGKEQAETTSHPEKLELEHGLQLEFKPVPVTNNIIPQA--EGSSSSCPVNDDVTGVDE 58
++I K+ E +E E G F + + + QA E + PV+ D +
Sbjct: 390 LAIAKQLVELMGGEIGVESEPGQGSTFTFIVFLHQQVDQALCEEEGADMPVDKDNCTAEA 449
Query: 59 KKVLE-GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
+++ + VLL ED V + M+ LG V + +DG AVEA +
Sbjct: 450 RQIGKFNARVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFS------------ 497
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
P YDLI MDCQM MDG +ATR IR + E +G+ +IA TA
Sbjct: 498 ------------RQP-YDLIFMDCQMPEMDGYQATRAIR--QRELGSGKHTTVIALTAHA 542
Query: 178 TADNERECFNSGMDTFLNKP 197
A C +GMD +L+KP
Sbjct: 543 MAGAREYCLTAGMDDYLSKP 562
>gi|392545163|ref|ZP_10292300.1| sensor protein [Pseudoalteromonas rubra ATCC 29570]
Length = 752
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ VLL ED + Q + +ML V L + G+ AV+ +
Sbjct: 617 LRGVRVLLAEDNPINQVVASKMLAAWEVEVQLAESGKQAVDML----------------- 659
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ H P DLILMDCQM MDG +ATR IR E E + +PIIA TA
Sbjct: 660 --REMPEHGLP--DLILMDCQMPEMDGYEATRHIRT-HPELEACRDLPIIALTANAMQGE 714
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ C GM +++KP Q LL A +++ + K+
Sbjct: 715 RKTCLACGMSGYVSKPIQADLLQAEMLKMLVDKA 748
>gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina NK-01]
gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina NK-01]
Length = 656
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 29/135 (21%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+G +VLLVED V Q + ML+ LG V+LV DG+ AV++ +
Sbjct: 533 DGQAVLLVEDNPVNQTVIEAMLRSLGYQVSLVGDGQQAVQSCS----------------- 575
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y ILMDC++ MDG +ATR IR+L E G+ +PIIA TA +
Sbjct: 576 --------QQDYAAILMDCRLPLMDGYEATRQIRQL----EQGRQVPIIALTANALQGDR 623
Query: 183 RECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 624 EACLEAGMNDYLAKP 638
>gi|392308784|ref|ZP_10271318.1| GGDEF domain protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1385
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 21/133 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + +++L K+G + ++G VEA+ + + KN
Sbjct: 1256 VLLVEDNKVNQLVALKLLSKVGIDTVVAENG---VEALLKLKESEQKN------------ 1300
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ L+LMDCQM MDG +AT+ IR+ A + QSIPIIA TA ++++C
Sbjct: 1301 -----VLFTLVLMDCQMPEMDGYEATKQIRKGSAGVQN-QSIPIIAMTANAMQGDKQKCL 1354
Query: 187 NSGMDTFLNKPAQ 199
++GM+ ++ KP +
Sbjct: 1355 DAGMNDYITKPIE 1367
>gi|358450616|ref|ZP_09161074.1| integral membrane sensor hybrid histidine kinase [Marinobacter
manganoxydans MnI7-9]
gi|357225265|gb|EHJ03772.1| integral membrane sensor hybrid histidine kinase [Marinobacter
manganoxydans MnI7-9]
Length = 782
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 29/138 (21%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ L+VLLVED V Q + +LKKLG ++G A++A+
Sbjct: 653 QSLAVLLVEDNQVNQLVASNLLKKLGHRADHAENGLKAIQAL------------------ 694
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
HYDL+LMDCQM MDG +AT+ IR + + +PIIA TA V +
Sbjct: 695 -------EQSHYDLVLMDCQMPVMDGYEATQRIR----QNPQWKDLPIIAVTANVMQGDR 743
Query: 183 RECFNSGMDTFLNKPAQE 200
+C SGM+ ++ KP +
Sbjct: 744 EDCLASGMNDYITKPYKR 761
>gi|406889807|gb|EKD35894.1| hypothetical protein ACD_75C01735G0002 [uncultured bacterium]
Length = 694
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 26/135 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L+ L+VED+ + Q+I +L KLG T+ ++G AA++
Sbjct: 571 LAALIVEDEQINQQILQAILTKLGHRPTIAENGYAALDL--------------------- 609
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
LE+H H+D++LMD QM +DG + TR+IR + ++IPIIA TA A ++ +
Sbjct: 610 -LESH---HFDIVLMDVQMPELDGLETTRIIRN-SKDFLAIRNIPIIALTAYAMAGDKDK 664
Query: 185 CFNSGMDTFLNKPAQ 199
C ++GMD +L KP +
Sbjct: 665 CLDAGMDGYLAKPVE 679
>gi|395003779|ref|ZP_10387887.1| signal transduction histidine kinase [Acidovorax sp. CF316]
gi|394318262|gb|EJE54711.1| signal transduction histidine kinase [Acidovorax sp. CF316]
Length = 745
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 72/146 (49%), Gaps = 28/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+G +VLLVED V + + ML+KLG DG A+E
Sbjct: 489 LQG-TVLLVEDHPVNRAVAAGMLRKLGLAWREAHDGAQAIE------------------- 528
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
++ H+ +D +LMDCQM +DG A+R IR L G S+PIIA TA AD+
Sbjct: 529 ---HVRAHD---FDAVLMDCQMPVVDGYAASRAIRGLPDG--RGASLPIIALTANAGADD 580
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
C SGMD F+ KP LAAA+
Sbjct: 581 AARCRASGMDGFIAKPYGIGTLAAAL 606
>gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1]
gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1]
Length = 671
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 27/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + Q++ ML K+G + + +G AVEA+
Sbjct: 548 VLLVEDNTINQKVAQAMLLKMGYQIDIAFNGADAVEAL---------------------- 585
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+Y L+LMD QM MDG +ATR IR +A E + I+A TA T ++ ++C
Sbjct: 586 ---KQKNYGLVLMDLQMPVMDGYEATRTIR--QAGRELDSEVHIVAMTANATKEDRQKCM 640
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
++GMD F+ KP + ++ A +
Sbjct: 641 DAGMDDFVAKPVERKVMTAML 661
>gi|392549348|ref|ZP_10296485.1| sensor protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1091
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 24/131 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + Q + +L+KLGA VT +G AA++ + + A
Sbjct: 961 ILLVEDNKINQTVATTLLEKLGAHVTCAHNGLAAIKHLKVREEA---------------- 1004
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y +ILMDCQM MDG AT+ IR A E Q PIIA TA +E +C
Sbjct: 1005 -------YAIILMDCQMPEMDGYTATKEIRAGVA-GEQHQQTPIIALTANAMEGDEEKCL 1056
Query: 187 NSGMDTFLNKP 197
+GMD +L+KP
Sbjct: 1057 AAGMDAYLSKP 1067
>gi|428218417|ref|YP_007102882.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990199|gb|AFY70454.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1669
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 30/144 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED AV Q++ IRML+K+G LV +G A+EA+ Q Q
Sbjct: 1539 IKILLAEDNAVNQKVAIRMLEKMGYRADLVGNGLEAIEAL-----------QRQT----- 1582
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIR-RLEAEAETGQSIPIIAFTALVTADNER 183
YDL+LMD QM MDG +ATR IR R +A+ I+A TA +
Sbjct: 1583 ---------YDLVLMDVQMPEMDGMEATRQIRDRTKADTHPW----IVAMTANAMQGDRE 1629
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAI 207
C +GM+ +++KP L AAI
Sbjct: 1630 NCLAAGMNDYVSKPVSVDELVAAI 1653
>gi|255948010|ref|XP_002564772.1| Pc22g07510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591789|emb|CAP98039.1| Pc22g07510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 649
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
+A+G S P + +TG +G +LLVED + +RI R L LG +++ +G+
Sbjct: 499 KAQGGDQSPPDEEKLTG-------DGQRILLVEDNVINRRIISRKLSTLGFNMSVASNGQ 551
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
AVEA ++P +D ILMD QM MDG +A + IR
Sbjct: 552 EAVEA------------------------NRDNP-FDCILMDQQMPVMDGNRAAKAIR-- 584
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+ E ETG +PI+ TA V + E ++GMD + KP H L I ++++ +
Sbjct: 585 DIEKETGGHVPILGVTANVRDAQQEEMIDAGMDDIIYKPYGTHELVEKINHLLSKEGN 642
>gi|427402112|ref|ZP_18893184.1| hypothetical protein HMPREF9710_02780 [Massilia timonae CCUG 45783]
gi|425718885|gb|EKU81826.1| hypothetical protein HMPREF9710_02780 [Massilia timonae CCUG 45783]
Length = 1018
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 29/150 (19%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VLLVED Q++ +L++ GA V + +GE A+ AM +
Sbjct: 751 AVLLVEDNPFNQQVARELLEQSGAAVEVANNGEEALAAMAV------------------- 791
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+D +LMD QM MDG +ATR IRR A +T ++A TA D+ C
Sbjct: 792 ------KRFDCVLMDVQMPVMDGLEATRRIRRDPALRDT----LVVAMTANAGVDDRARC 841
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GM+ FL KP LLAA I + R +
Sbjct: 842 LAAGMNEFLAKPVVPELLAATIARCLGRAT 871
>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
bemidjiensis Bem]
gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
bemidjiensis Bem]
Length = 578
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED V + M+ LG V + +DG AVEA T
Sbjct: 456 VLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFT--------------------- 494
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
P YDLI MDCQM MDG +ATR IR + E +G+ +IA TA A C
Sbjct: 495 ---RQP-YDLIFMDCQMPEMDGYQATRAIR--QRELGSGRHTTVIALTAHAMAGAREHCL 548
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
++GMD +L+KP L IV+
Sbjct: 549 SAGMDDYLSKPFNLEQLQELIVK 571
>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 834
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 32 VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
+ N IP S SS ++ +++ L L +LL ED Q++ + L +LG
Sbjct: 682 IPNPSIPTTASSISSRENQEEAILMEK---LRSLRILLAEDNITNQKVTLAYLSQLGIQS 738
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
L ++GE ++ + + YD+ILMDCQM +DG
Sbjct: 739 DLAENGEQVLQLI-------------------------QTKSYDIILMDCQMPVLDGYDT 773
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
T IRRLEA +T + I IIA TA ++ C GMD +L+KP ++ L A+
Sbjct: 774 TEAIRRLEAINQTPKPILIIAMTANAFTEDRDRCLAIGMDDYLSKPIRKQQLKEAL 829
>gi|436838140|ref|YP_007323356.1| multi-sensor hybrid histidine kinase [Fibrella aestuarina BUZ 2]
gi|384069553|emb|CCH02763.1| multi-sensor hybrid histidine kinase [Fibrella aestuarina BUZ 2]
Length = 922
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 32/176 (18%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
+I A G +S VT D+ L +LLVED + + + +L+ G +
Sbjct: 657 LISFAIGQPASLTPPTQVTPPDD--FLRKKRILLVEDNEMNRMVVQMILESYGPTIVEAV 714
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
+G+ A+EA+ + +DL+LMD QM MDG +ATR+I
Sbjct: 715 NGQKAIEAL-------------------------RAESFDLVLMDVQMPIMDGLEATRLI 749
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
RR E ++PI+A TA V + ECF +GM+ FL KP E L A + + +
Sbjct: 750 RR-----EISTTLPIVALTASVIRSEQEECFQAGMNDFLGKPFDEKDLIAQLTKWL 800
>gi|121711042|ref|XP_001273137.1| osmolarity two-component system protein sln1 [Aspergillus clavatus
NRRL 1]
gi|119401287|gb|EAW11711.1| osmolarity two-component system protein sln1 [Aspergillus clavatus
NRRL 1]
Length = 1091
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 27/138 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
VL+ ED AV Q + +RML+ + VT+VKDG+ A + + N+ G
Sbjct: 960 VLVAEDNAVNQEVVLRMLRLEEVYDVTVVKDGQEAYDTVK------------ANMEEGK- 1006
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+DLI MD QM ++DG ++TR+IR + G S PI+A +A N ++C
Sbjct: 1007 -------VFDLIFMDIQMPNLDGLQSTRLIRGM------GYSAPIVALSAFSEESNIKDC 1053
Query: 186 FNSGMDTFLNKPAQEHLL 203
+SGMD F++KP + L
Sbjct: 1054 IDSGMDMFISKPIRRPAL 1071
>gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter
crescentus CB15]
gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
crescentus NA1000]
gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter
crescentus CB15]
gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
crescentus NA1000]
Length = 690
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 28/151 (18%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EGL VLL ED + QR+ +L+ GA VT+V++G AVEAM
Sbjct: 568 EGLKVLLAEDHPINQRVVQLILEPCGAAVTVVENGAQAVEAMA----------------- 610
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
S +D++LMD QM MDG ATR IR E E GQ PII +A +
Sbjct: 611 --------SGAFDVVLMDMQMPVMDGLAATRAIRAREGE---GQRTPIIMLSANAMDVHR 659
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
RE +G D + KP L +I + +AR
Sbjct: 660 REALQAGADLHVPKPITIAALLDSIGQVMAR 690
>gi|406934815|gb|EKD68984.1| hypothetical protein ACD_47C00334G0001 [uncultured bacterium]
Length = 455
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDE-------KKVLE------GLSVLLVEDQAVLQRIGIRM 83
+ AEGS S + DE KKVL+ G+++LL ED V Q + + +
Sbjct: 287 VKSAEGSGSIFTFDIPFALTDEPAASAIAKKVLKNNHKNGGVNILLAEDDRVSQLLILTI 346
Query: 84 LKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143
++ G + + DG A LE + S YD+I MD QM
Sbjct: 347 AEQNGWNIDIAPDGSKA-------------------------LEKYASKRYDIIFMDGQM 381
Query: 144 GSMDGCKATRVIRRLEAEAETG--QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH 201
MDG +ATR IR EAE G + PIIA TA ++ + +G+D +++KP E
Sbjct: 382 PDMDGFEATRRIR--EAEKNNGGEKRTPIIAITAYALKEDREKFIVAGIDDYISKPIDEQ 439
Query: 202 LLAAAIVETIARKSH 216
L A + E I + H
Sbjct: 440 KLIAKLNELIKKNGH 454
>gi|425766255|gb|EKV04879.1| hypothetical protein PDIG_86800 [Penicillium digitatum PHI26]
gi|425778985|gb|EKV17080.1| hypothetical protein PDIP_32790 [Penicillium digitatum Pd1]
Length = 646
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 27/159 (16%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
EK +G +LLVED + +RI R L LG ++ ++G+ AV+A N G
Sbjct: 514 EKLTGDGQRILLVEDNVINRRIISRKLNTLGFDISEARNGKEAVDA-----NKKGP---- 564
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+D ILMD QM MDG AT+ IR E E ETG +PI+ TA V
Sbjct: 565 ----------------FDCILMDQQMPVMDGNCATKAIR--EIEKETGGHVPILGLTANV 606
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+ ++E +GMD ++KP H L I ++++ +
Sbjct: 607 RDEQQQEMIGAGMDDIIHKPYGTHELVEKINRMVSKERN 645
>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 956
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 30/147 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VLLVED + Q + +L+ +G V + +G+ AVE Q+Q
Sbjct: 614 LRGARVLLVEDNELNQEVATELLQGVGVEVAVAHNGQEAVE-------------QVQ--- 657
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ +DL+LMD QM MDG ATR IRR EA + +PIIA TA A +
Sbjct: 658 ---------AGRFDLVLMDMQMPVMDGLTATRTIRRDEALS----GLPIIAMTANAMASD 704
Query: 182 ERECFNSGMDTFLNKPAQ-EHLLAAAI 207
C +GM+ L KP + EHL A+ +
Sbjct: 705 REACLAAGMNDHLAKPIEPEHLFASLL 731
>gi|260946627|ref|XP_002617611.1| hypothetical protein CLUG_03055 [Clavispora lusitaniae ATCC 42720]
gi|140083798|gb|ABO84859.1| histidine kinase receptor SLN1 [Clavispora lusitaniae]
gi|238849465|gb|EEQ38929.1| hypothetical protein CLUG_03055 [Clavispora lusitaniae ATCC 42720]
Length = 1195
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 26/149 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
L L +L+ ED +V Q + RML+ G VT+ +G AV+ +QN
Sbjct: 1037 LSHLKILVAEDNSVNQEVIKRMLRLEGFTNVTMAGNGAEAVD-------------YVQNA 1083
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+ ET + +D+I MD QM MDG AT++IR + G+ PIIA TA
Sbjct: 1084 Y-----ETDS--QFDMIFMDVQMPKMDGLTATKLIRN---NLKYGK--PIIALTAFADES 1131
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVE 209
N +EC NSGM FL+KP + L I E
Sbjct: 1132 NVKECLNSGMSGFLSKPIKRTNLRQIITE 1160
>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
Length = 1791
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 27/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LLVED A+ +R+ ++ML K+G T+ +G AV+ +
Sbjct: 1671 LRILLVEDSAISRRVLLQMLDKMGHTATIAVNGAEAVKLFS------------------- 1711
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++LMD QM MDG AT+ I+ ++ E TG+ +P+IA TA A +
Sbjct: 1712 ------RQSFDMVLMDIQMPVMDGIAATKQIKSMQKE--TGKKVPVIAITANAMAGDRER 1763
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
+ G+D ++ KP + LA AI
Sbjct: 1764 ILSQGLDDYVAKPVKMETLADAI 1786
>gi|410627157|ref|ZP_11337901.1| GAF sensor hybrid histidine kinase [Glaciecola mesophila KMM 241]
gi|410153224|dbj|GAC24670.1| GAF sensor hybrid histidine kinase [Glaciecola mesophila KMM 241]
Length = 662
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 23/145 (15%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V + K L L VL+VED + Q + MLK+ +V DG +EA+ ++
Sbjct: 530 VSQTKDLSNLHVLVVEDNEINQVVIGEMLKQRQITYDIVNDG---LEALAIL-------- 578
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
+E + Y LILMDCQM +MDG + T+ IR+L + SIPIIA TA
Sbjct: 579 ---------EVEKSSMNPYTLILMDCQMPNMDGYQTTQHIRQLSSNVA---SIPIIALTA 626
Query: 176 LVTADNERECFNSGMDTFLNKPAQE 200
++ +CF SGM+ +L+KP +
Sbjct: 627 NALSEEREKCFASGMNEYLSKPVDQ 651
>gi|355671069|ref|ZP_09057716.1| hypothetical protein HMPREF9469_00753 [Clostridium citroniae
WAL-17108]
gi|354815985|gb|EHF00575.1| hypothetical protein HMPREF9469_00753 [Clostridium citroniae
WAL-17108]
Length = 1145
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 24/137 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED A+ Q I + +L+ LG L +G+ VEA
Sbjct: 1020 ILLCEDNAINQEIMMGILEFLGLTTELAVNGKEGVEA----------------------F 1057
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
++ +Y ILMDC+M MDG +ATR IR L E IPIIA TA ++ + C
Sbjct: 1058 QSRKPGYYSAILMDCRMPVMDGYQATRAIRAL--ERPDAARIPIIALTADAFEEDRKRCL 1115
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD FL KP + +L
Sbjct: 1116 EAGMDDFLAKPVEIKVL 1132
>gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas albilineans GPE PC73]
gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid
protein [Xanthomonas albilineans GPE PC73]
Length = 838
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEG-LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
+ G+ + P D +T + +LLVED V + R+L+ LG V++G
Sbjct: 505 KGRGTPDNTPRTDAMTSKSNLQTTPSQYRLLLVEDNPVNMMVAQRLLEALGYRADTVENG 564
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
AA+ + YDL+LMDCQM +DG ATR R+
Sbjct: 565 AAALTQLA-------------------------QQAYDLVLMDCQMPVLDGYAATRQWRQ 599
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
EA A T +PI+A TA A + + C ++GMD +L+KP + L A +
Sbjct: 600 SEANA-TQARLPIVAMTANAMAGDRQRCLDAGMDDYLSKPIDQTRLKACL 648
>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
Length = 1039
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 25/150 (16%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VLLVED V Q++ L K+G + +G A+E H+
Sbjct: 755 VKVLLVEDNIVNQKVASLHLNKMGLEYDVANNGVEAIE------------------HYKK 796
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ Y ILMDC M MDG +AT IR E+ ++ PIIA TA V D+ ++
Sbjct: 797 D------TSYAFILMDCMMPIMDGFEATEKIRSYESNNHLPRT-PIIALTASVVDDDIQK 849
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF+SGMD ++ KP + +L IV I K
Sbjct: 850 CFDSGMDDYVPKPFKAEILKEKIVSAIELK 879
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 26/138 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q++ LKK G + DG+ EA+ L I + GK
Sbjct: 919 VLLVEDNLVNQKVASLHLKKAGFDYVIAADGQ---EALELFI-SQGK------------- 961
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M DG AT+ IR E E + PIIA TA V D+ ++CF
Sbjct: 962 -------FDVILMDCMMPIKDGFHATQDIRSYEKEHGLNPT-PIIALTASVVDDDIQKCF 1013
Query: 187 NSGMDTFLNKPA-QEHLL 203
++GMD ++ KP +E LL
Sbjct: 1014 DAGMDAYVPKPVRREKLL 1031
>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
Length = 837
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G + K G +LL ED V Q++ + +L+K G VT+ DG+ AVEA
Sbjct: 554 GAEPKLGSWGRRILLAEDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEAW---------- 603
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+DL+LMD QM +DG AT IRR E T IPIIA T
Sbjct: 604 ---------------KEGGFDLVLMDVQMPILDGMAATTEIRR--HETRTALRIPIIAMT 646
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
A + C +GMD ++ KP L AI E +
Sbjct: 647 AHAMKGDRERCLEAGMDGYVTKPINAQALYDAIDEAL 683
>gi|350563864|ref|ZP_08932684.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
gi|349778385|gb|EGZ32741.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
Length = 881
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 28/148 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + Q++ I +LK+LG L +GE A L I A K
Sbjct: 759 ILLVEDNLINQKLAIALLKELGLEARLASNGEEA-----LAILAKDK------------- 800
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMDCQM DG +AT +R + QS+P+IA TA +E C+
Sbjct: 801 -------FDLVLMDCQMPVKDGFEATAELRFAKG---LNQSVPVIAMTANAMQGDEERCY 850
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARK 214
+GMD +++KP +LA + + ++ K
Sbjct: 851 AAGMDDYISKPVNPSILAEKLTKWLSDK 878
>gi|238499603|ref|XP_002381036.1| two-component osmosensing histidine kinase (Bos1), putative
[Aspergillus flavus NRRL3357]
gi|220692789|gb|EED49135.1| two-component osmosensing histidine kinase (Bos1), putative
[Aspergillus flavus NRRL3357]
Length = 900
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 658 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 707
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ K H+ YD+ILMD QM M
Sbjct: 708 NHKVSVVSNGLEAVEAV--------KQHR-----------------YDVILMDVQMPVMG 742
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 743 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 800
Query: 207 IVE 209
I++
Sbjct: 801 ILK 803
>gi|109899905|ref|YP_663160.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
gi|109702186|gb|ABG42106.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
Length = 1172
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 28/164 (17%)
Query: 53 VTGVDEKKVLEGLS----VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
+T + E K+L +LLVED + Q++ I MLKKL V + ++G+ A+ +
Sbjct: 1033 ITALPETKLLNKYRQAPHILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAIHTLE--- 1089
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
+ +D ILMDCQM MDG +A+R IR+ + + ++
Sbjct: 1090 --------------------ESEAKFDAILMDCQMPIMDGYEASRTIRKSQ-HSNYASTL 1128
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
PIIA TA ++ C +GM+ +L KP L A +++ +A
Sbjct: 1129 PIIALTANAMKGDKEACLAAGMNAYLTKPIVLTELRAELIKWLA 1172
>gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 685
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 77/176 (43%), Gaps = 25/176 (14%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
IP + C +D+ GV + L +LLVED + Q I ML+ L L +
Sbjct: 533 IPCTAARNIYCETSDEAHGVLPLQNAADLKILLVEDNEINQEIARAMLRHLDIECDLAHN 592
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G AV L+T YD+I MD M MDG ATR IR
Sbjct: 593 GREAVHMA---------------------LQTC----YDMIFMDVYMPVMDGLHATREIR 627
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
R +A G+++PIIA TA+ + E +SGMD +L KP L IV+ +
Sbjct: 628 RNLPKAPHGKALPIIAMTAVAMPETMDEIMDSGMDDYLAKPFNLVTLRNKIVQWLG 683
>gi|452986498|gb|EME86254.1| hypothetical protein MYCFIDRAFT_202442 [Pseudocercospora fijiensis
CIRAD86]
Length = 665
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + QRI R L+ G VT +GE AV Q++ L
Sbjct: 534 VLLVEDNIINQRIVFRKLESKGFNVTTANNGEEAV----------------QSVRDAPKL 577
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ + +++ILMD +M M+G ATR IR LEA E + IPI+ TA V + + E
Sbjct: 578 SSGDKGAFNVILMDQEMPKMNGNTATRAIRDLEARGEI-ERIPILGVTANVRSAQQDEMI 636
Query: 187 NSGMDTFLNKPAQ 199
SGMD ++KP +
Sbjct: 637 TSGMDDVISKPYR 649
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+++D V +R+ LKK GA V + G+ A+ + +
Sbjct: 925 KSLLTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 972
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E EA+ + PI+A
Sbjct: 973 -------------PHSFDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTKLEWHLPILAM 1019
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1020 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1057
>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
Length = 1346
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED AV + + ++L+K+G V DG A+ A+
Sbjct: 1210 VLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAV---------------------- 1247
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YD ILMD QM +DG +ATR RL E + + ++A TA VT D+ R C
Sbjct: 1248 ---RDQAYDAILMDVQMPELDGLEATR---RLRNEMPSEEQPYVVALTASVTEDDRRRCL 1301
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD FL+KP ++ LA A+
Sbjct: 1302 EAGMDAFLSKPIRKDELAEAL 1322
>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 954
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 28/131 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V Q++ ++ML+KLG V + +G A+ A+ HQ
Sbjct: 817 LLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVC--------RHQ---------- 858
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y L+ MDCQM +DG + TR+IR ++ + G +PIIA TA A + C
Sbjct: 859 -------YPLVFMDCQMPELDGLETTRLIR---SQEQAGTHLPIIAMTANAMAGDRENCL 908
Query: 187 NSGMDTFLNKP 197
+GMD F++KP
Sbjct: 909 KAGMDDFISKP 919
>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
ruber M8]
gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
ruber M8]
Length = 1346
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED AV + + ++L+K+G V DG A+ A+
Sbjct: 1210 VLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAV---------------------- 1247
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YD ILMD QM +DG +ATR RL E + + ++A TA VT D+ R C
Sbjct: 1248 ---RDQAYDAILMDVQMPELDGLEATR---RLRNEMPSEEQPYVVALTASVTEDDRRRCL 1301
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD FL+KP ++ LA A+
Sbjct: 1302 EAGMDAFLSKPIRKDELAEAL 1322
>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1526
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 27/140 (19%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E + + L +LL ED V Q++ +R L+ LG +V +G+ E + L+ +
Sbjct: 1243 EDRPRQSLRILLAEDNPVNQKVALRQLESLGYKADVVANGQ---EVLDLLQKVS------ 1293
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
YDLILMDCQM MDG +ATR +R + E +G +IA TA
Sbjct: 1294 ----------------YDLILMDCQMPVMDGYEATRRLR--QQERRSGHRTVVIAITANA 1335
Query: 178 TADNERECFNSGMDTFLNKP 197
++ C +GMD +L+KP
Sbjct: 1336 MQEDRERCLQAGMDDYLSKP 1355
>gi|88714407|gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
Length = 1082
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 38/164 (23%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V +++ L K GA V V G AA++++
Sbjct: 938 QNLLTGKRILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSL-------------- 983
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEA----ETGQ------- 166
PH YD MD QM MDG +ATR+IR+ EA A + G+
Sbjct: 984 -----------KPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVDNWQAGRFSSFGRR 1032
Query: 167 -SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+PI+A TA V EC GMD ++ KP EH L A+ +
Sbjct: 1033 LHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHHLYQAVAK 1076
>gi|440639641|gb|ELR09560.1| hypothetical protein GMDG_04055 [Geomyces destructans 20631-21]
Length = 1163
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED V Q + +RMLK + VT+ KDG+ A E + A +Q
Sbjct: 1005 IRVLVAEDNLVNQEVVLRMLKLEDIYDVTVAKDGQEAYEKV-----KASMEEGLQ----- 1054
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++LI MD QM ++DG ++TR+IR++ G S PI+A TA N +
Sbjct: 1055 ----------FNLIFMDIQMPNLDGLQSTRLIRQM------GYSAPIVALTAFSEESNVQ 1098
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC +SGMD FL+KP + L
Sbjct: 1099 ECMDSGMDMFLSKPIRRPAL 1118
>gi|384421077|ref|YP_005630437.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463990|gb|AEQ98269.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 746
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ M
Sbjct: 474 VRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALTRM-------------------- 513
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD++ MDCQM +DG ATR R +E E+ G+ IPI+A TA A +
Sbjct: 514 -----ESIRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPIPIVAMTANAMAGDRER 567
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C GMD +L KP L A + + R++
Sbjct: 568 CLAVGMDDYLPKPVAREQLDACLQRWLPRQT 598
>gi|154305384|ref|XP_001553094.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 1107
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 36/165 (21%)
Query: 43 SSSSCPVNDD-----VTGVD----EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVT 92
SS + P NDD + +D EK + + VL+ ED V Q + +RMLK V
Sbjct: 968 SSPTPPPNDDNAKTQLAAIDRAAKEKVGDKKIRVLVAEDNLVNQEVVLRMLKLEDVYDVV 1027
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+ KDG+ A + + Q++ G ++LI MD QM ++DG ++T
Sbjct: 1028 VAKDGQEAYDIVK------------QSMEEGK--------FFNLIFMDIQMPNLDGLQST 1067
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
R+IR E G S I+A TA N +EC+ SGMD FL+KP
Sbjct: 1068 RLIR------EMGYSAAIVALTAFAEESNVKECYESGMDHFLSKP 1106
>gi|119497735|ref|XP_001265625.1| osmolarity two-component system protein sln1 [Neosartorya fischeri
NRRL 181]
gi|119413789|gb|EAW23728.1| osmolarity two-component system protein sln1 [Neosartorya fischeri
NRRL 181]
Length = 1093
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 41/207 (19%)
Query: 4 GKEQAETTSHPEKLELEHGL----QLEFKPVPVTN-NIIPQAEGSSSSCP-VNDDVTGVD 57
G +++ ++ EK +L+ L Q F P P + P+A + + P V D +G
Sbjct: 901 GSVRSDPLTNFEKQDLQPRLVGLSQPFFTPTPSSPAPSTPRAPPADGAKPEVKDSTSG-- 958
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+ VL+ ED V Q + +RML+ + VT+VKDG+ A + +
Sbjct: 959 ------KVRVLVAEDNVVNQEVVLRMLRLEEVYDVTVVKDGQEAYDTVK----------- 1001
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
N+ G +DLI MD QM ++DG ++TR+IR + G S PI+A +A
Sbjct: 1002 -ANMEEGK--------VFDLIFMDIQMPNLDGLESTRLIRGM------GYSAPIVALSAF 1046
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLL 203
N ++C +SGMD F++KP + L
Sbjct: 1047 SEESNIKDCMDSGMDMFISKPIRRPAL 1073
>gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
Length = 818
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 31/173 (17%)
Query: 32 VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
+ N++ + E S PV ++ KK+ VL+VED V Q++ L KL
Sbjct: 670 LINSVSNRYEQKESFVPVELELN--KNKKI-----VLVVEDNKVNQQVVSINLNKLNLPY 722
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
+ DG A+E H+ ++ ++ +ILMDC M MDG +A
Sbjct: 723 LIANDGREALE------------------HYKRHI-----GNFSVILMDCMMPVMDGFEA 759
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
TR IR E E E + + IIA TA + D+ ++CF+SGMD +L KP + +L
Sbjct: 760 TRAIREFEKE-EDAKRVQIIALTASILDDDIQKCFDSGMDDYLPKPFKREVLV 811
>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|440708940|ref|ZP_20889600.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
gi|439975681|gb|ELP51793.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
Length = 1268
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 29/169 (17%)
Query: 31 PVTNNIIPQAEGS--SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
PVT N++ QA S ++ + + + L+G+S+LLVED Q + +L++LG
Sbjct: 893 PVTKNMMLQAVKSVVFGDLDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLG 952
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
A + + GE A+E + + H+D++LMD QM MDG
Sbjct: 953 ATIKIASSGEEALEML-----------------------ESTAEHFDMVLMDIQMPGMDG 989
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ TR IR+L Q +PIIA TA +D+ C +GM + KP
Sbjct: 990 YQTTREIRKLPRH----QLLPIIAITAHAMSDDIAACLAAGMQDHIAKP 1034
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 42/155 (27%)
Query: 63 EGLSVLLVED----QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
E LSVL+V+D + +LQ I + LG + D + A +L++ A ++
Sbjct: 781 EKLSVLIVDDNDSSRIILQGIAV----SLGWQAKIASDAQEA----SLLVKQAHRD---- 828
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YD++ +D +M DG R +R L + +++ ++T
Sbjct: 829 ------------STRYDVVFVDWRMPGKDGLTFARELRELHSS--------VVSLIVMIT 868
Query: 179 A------DNERECFNSGMDTFLNKPAQEHLLAAAI 207
A D + + +D FL KP ++++ A+
Sbjct: 869 AHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAV 903
>gi|386394035|ref|ZP_10078816.1| signal transduction histidine kinase [Desulfovibrio sp. U5L]
gi|385734913|gb|EIG55111.1| signal transduction histidine kinase [Desulfovibrio sp. U5L]
Length = 815
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 29/143 (20%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G D + L G +LLVED ++ +++ L++ GA V + + G AVE M+ AA
Sbjct: 298 GTDTGRPLAGTLILLVEDNSINRQVARDTLQRFGASVDVARHGGEAVE----MVKAA--- 350
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
YD +LMD QM MDG ATR+IR L G +PI+A T
Sbjct: 351 ------------------FYDAVLMDVQMPVMDGLTATRLIRALPG----GPDLPIVALT 388
Query: 175 ALVTADNERECFNSGMDTFLNKP 197
A A++ C +GM+ +L KP
Sbjct: 389 AHALAEDRDRCLEAGMNDYLTKP 411
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLV+D + + I ++L+ G V +G+ A A+ A G+
Sbjct: 583 ILLVDDAKLNRAIFSQILRSAGHDVATAANGKEACRAL-FGEKATGRP------------ 629
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRL---EAEAETGQSIPIIAFTALVTADNER 183
YDLILMD +M MDG ATRVIR L A IPI+A T+
Sbjct: 630 -------YDLILMDIEMPEMDGPAATRVIRGLLSASASPPCPPGIPIVALTSHDVDGERA 682
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C +GMD L K + A+++++AR
Sbjct: 683 RCREAGMDECLPKLFEHD----ALLDSLAR 708
>gi|399521248|ref|ZP_10761988.1| K07678 two-component system, NarL family, sensor histidine kinase
BarA [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110486|emb|CCH38547.1| K07678 two-component system, NarL family, sensor histidine kinase
BarA [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 923
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+EA+ HGS +DL+ MD Q
Sbjct: 691 LLDDLGAQVTAVDSGYAAIEAV----------------QHGS---------FDLVFMDVQ 725
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IR+ E+E + + PIIA TA A+ +R SGMD +L KP E
Sbjct: 726 MPGMDGREATEAIRQWESE-QGRSATPIIALTAHALANEKRALLQSGMDDYLTKPINERQ 784
Query: 203 LAAAIVE 209
LA +++
Sbjct: 785 LAQVVLK 791
>gi|389578240|ref|ZP_10168267.1| signal transduction histidine kinase [Desulfobacter postgatei 2ac9]
gi|389399875|gb|EIM62097.1| signal transduction histidine kinase [Desulfobacter postgatei 2ac9]
Length = 808
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED + Q + +LK LG V L +GE A+ A+
Sbjct: 548 VLVVEDNTINQEVSSGILKNLGCRVDLAPNGEKALAAV---------------------- 585
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YD+I MDCQM MDG TR IR + + + +G +P+IA TA A + +C
Sbjct: 586 ---KDKSYDIIFMDCQMPVMDGYDTTRRIRAMGSISRSGGELPVIALTAHALAGDRVKCI 642
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD L KP + +A +
Sbjct: 643 KAGMDDHLAKPFSKFQMATVL 663
>gi|451946001|ref|YP_007466596.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905349|gb|AGF76943.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 814
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 57 DEKKVLEG----LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
+E++VLE VLL ED Q + MLK G V LV +G AVEA+
Sbjct: 536 EEEQVLENRIYDYQVLLAEDNRTNQIVAEAMLKFFGCRVDLVVNGREAVEAV-------- 587
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
YDLI MDCQM +DG AT IRR E + + ++ PIIA
Sbjct: 588 -----------------KRKKYDLIFMDCQMPELDGYMATDEIRRFEKQNGSSRT-PIIA 629
Query: 173 FTALVTADNERECFNSGMDTFLNKP 197
TA + + C +GMD +L+KP
Sbjct: 630 LTAHALSGDRERCLAAGMDDYLSKP 654
>gi|295687501|ref|YP_003591194.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
21756]
gi|295429404|gb|ADG08576.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
21756]
Length = 910
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 69/154 (44%), Gaps = 28/154 (18%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G + +L GL VL+VED A Q + R+L++LGA VT+ DG + V A
Sbjct: 767 GSEADDLLAGLRVLVVEDNATNQLVARRILEQLGAAVTVADDGASGVAAA---------- 816
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+DLILMD QM MDG +A R IR L EA PIIA T
Sbjct: 817 ---------------RDGGFDLILMDVQMPGMDGLEAARRIRALPGEAARS---PIIALT 858
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
A V A +GMD KP L A I+
Sbjct: 859 ANVMAHQRAAYRAAGMDGVAAKPISPAALVAEIL 892
>gi|255542874|ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223548461|gb|EEF49952.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 912
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 57 DEK---KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
DEK K L G VL+VED +L+RI L KLGA V +GE EA+T + A
Sbjct: 767 DEKHNDKPLNGKKVLVVEDAELLRRIVTTTLGKLGANVEACTNGE---EALTQVCKALSD 823
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAF 173
+ G + S YD I MDC+M M+G +ATR+IR E + + IPIIA
Sbjct: 824 QKK-----EGDS----KSIPYDYIFMDCEMPVMNGYEATRLIRIEERKHDV--HIPIIAL 872
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
TA + + ++GMD LNKP Q L I
Sbjct: 873 TAHAMPEEASKSIDAGMDFHLNKPLQVDKLLGVI 906
>gi|424029906|ref|ZP_17769407.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-01]
gi|408883581|gb|EKM22363.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-01]
Length = 878
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L K G + +G+ A+EA+T
Sbjct: 757 ILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAIT--------------------- 795
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG AT+ IRR E E +G+ I IIA TA V ++ + CF
Sbjct: 796 ---KGEKFDAILMDCMMPVMDGLTATKEIRRWEKEVGSGK-ITIIALTASVLEEDIQNCF 851
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 852 AAGMDAYLPKPYKSNQL 868
>gi|345876839|ref|ZP_08828601.1| phosphoenolpyruvate synthase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344226132|gb|EGV52473.1| phosphoenolpyruvate synthase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 1426
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 29/151 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED A+ + + + +L G V ++G AV M+ A
Sbjct: 1046 GSRILLVEDNAINREVAMELLSGAGLAVDTAENGREAVT----MVRATA----------- 1090
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDL+LMD QM MDG +ATRVIR + ++A ++PI+A TA V ++ +
Sbjct: 1091 ----------YDLVLMDIQMPEMDGREATRVIRSMASKA----ALPILAMTANVFEEDRQ 1136
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
C +GM+ F+ KP L + I + + ++
Sbjct: 1137 ACLEAGMNDFIAKPVDPESLFSTIAKWLPKR 1167
>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
Length = 1547
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 22/147 (14%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + ML +G VT +G A++A+ ++ Q +L
Sbjct: 1264 VLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDAL--------QSAQQWDL------ 1309
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y L+LMDCQM MDG + TR IR +A E + IPIIA TA ++ CF
Sbjct: 1310 -------YSLVLMDCQMPEMDGYETTRSIRAGKA-GEIYKKIPIIAMTANAMKGDKERCF 1361
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+GMD +++KP +L + + + R
Sbjct: 1362 AAGMDDYISKPIDPQVLEDRLRKWLPR 1388
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
LE SVLL+ED ++ + R L GA V +DG + + Q+L
Sbjct: 1106 LENKSVLLIEDNKSVRELVYRWLDSWGANVFAAEDGAQGLA-------------RCQDLK 1152
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+NL D++L+D + GC + + +E A+ +P++ + + +
Sbjct: 1153 ALNNLP-------DVVLIDQYLPDQTGCDLAKQMLGIEGCAD----LPVLILSRIAEGEL 1201
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
++ C ++G ++ KP L A +VE++
Sbjct: 1202 QKFC-DAGARGYVAKP----LTRAGLVESV 1226
>gi|440467612|gb|ELQ36823.1| sensory/regulatory protein rpfC [Magnaporthe oryzae Y34]
Length = 1436
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 46 SCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105
+ PV D++ D + + VLLVED ++Q+I I+ +KKLG V V +G+ EA+
Sbjct: 1114 ASPVLADLSMADRAE----MHVLLVEDNLIIQQIAIKNIKKLGFKVDAVWNGK---EALA 1166
Query: 106 LMINAA-GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
+ A GKN P D+ILMD QM +DG + ++R
Sbjct: 1167 YLEGAQDGKN-----------------PKPDIILMDVQMPVLDGYRTVHLLRHHFPYKTY 1209
Query: 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+PI+A TA + C +GMD +L KP + LL +V
Sbjct: 1210 VNDVPIVAMTASAIQGDRERCMQAGMDDYLAKPVKSKLLEKMLV 1253
>gi|375149380|ref|YP_005011821.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361063426|gb|AEW02418.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1017
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 32/176 (18%)
Query: 41 EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
+GS S P D+ E +L +L+VED + + + +L + GA ++ +G A
Sbjct: 747 KGSESDLPKKDNSHV--EAHILADKKILVVEDNEMNRIVAETILNQYGATISEAVNGMDA 804
Query: 101 VEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA 160
++A+ HN H+D++LMD QM MDG +ATR +R+
Sbjct: 805 IDALR-----------------------HN--HFDIVLMDIQMPVMDGLEATRHVRQ--- 836
Query: 161 EAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
E +IPIIA TA +C +GM+ +L+KP +E L I + + R++H
Sbjct: 837 --ELASNIPIIALTANAVKGEMEKCIQAGMNDYLSKPFEEEDLIRLIAKWLGRETH 890
>gi|392549462|ref|ZP_10296599.1| GGDEF domain protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1378
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 23/131 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + R+L+ LG + + ++G A++ + N
Sbjct: 1251 VLLVEDNKVNQLVATRILEHLGVTIDIAENGLEALDKL-------------------RNT 1291
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
ET Y L+LMDCQM MDG +ATR IR +A IPIIA TA + ++C
Sbjct: 1292 ETQ---AYTLLLMDCQMPKMDGYEATRRIRSAQA-GNHYTDIPIIAMTANAMQGDRQKCL 1347
Query: 187 NSGMDTFLNKP 197
++GMD ++ KP
Sbjct: 1348 DAGMDDYITKP 1358
>gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
Length = 651
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 74/169 (43%), Gaps = 41/169 (24%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
P+P ++ + S + PV G +LLVED V Q + ML+ LG
Sbjct: 491 PLPFQQSLPHPQQASGGASPVA------------AGQEILLVEDNPVNQTVIEAMLRSLG 538
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
VTLV DG IQ + H + YD ILMDC++ +DG
Sbjct: 539 YRVTLVADG-------------------IQAVRHAERQQ------YDAILMDCRLPVLDG 573
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
ATR IR E G+ +PIIA TA + C ++GM+ +L KP
Sbjct: 574 YAATREIR----AQENGRQVPIIALTANALQGDRENCLHAGMNDYLAKP 618
>gi|350534229|ref|ZP_08913170.1| histidine kinase [Vibrio rotiferianus DAT722]
Length = 639
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 28/137 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q++ ML+KLG V + + GE EA+ L + HQ
Sbjct: 509 VLVVEDTEVNQKVVRIMLEKLGMQVRVAEHGE---EALKLC-----QEHQ---------- 550
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMDCQM MDG AT IR++ G+ +PI+A +A V +++R CF
Sbjct: 551 -------FDLILMDCQMPVMDGFVATENIRKM---GVWGKQVPIVALSANVIKEDQRRCF 600
Query: 187 NSGMDTFLNKPAQEHLL 203
GM+ F+ KP + L
Sbjct: 601 AIGMNEFVAKPVTKERL 617
>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1282
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 53/212 (25%)
Query: 24 QLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKV-----------LEGLSVLLVED 72
Q E K V V ++I+ + SS + G + K+V L +L+V+D
Sbjct: 1088 QDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRKKVSKLGNLLIDKQILVVDD 1147
Query: 73 QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132
AV +R+ +L+K GA VT V+ G AA++ + L P
Sbjct: 1148 NAVNRRVAKGVLQKYGAKVTAVESGRAALKMLEL-------------------------P 1182
Query: 133 H-YDLILMDCQMGSMDGCKATRVIRRLEAEAE----TGQS------------IPIIAFTA 175
H +D MD QM MDG +ATR IR LE+E GQ+ IPI+A TA
Sbjct: 1183 HNFDACFMDLQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTA 1242
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
T + EC GM+ +++KP +E L A+
Sbjct: 1243 DSTQSSNEECIKCGMNDYVSKPFEEEQLYMAM 1274
>gi|389633229|ref|XP_003714267.1| sensory/regulatory protein rpfC [Magnaporthe oryzae 70-15]
gi|351646600|gb|EHA54460.1| sensory/regulatory protein rpfC [Magnaporthe oryzae 70-15]
Length = 1412
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 46 SCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105
+ PV D++ D + + VLLVED ++Q+I I+ +KKLG V V +G+ EA+
Sbjct: 1090 ASPVLADLSMADRAE----MHVLLVEDNLIIQQIAIKNIKKLGFKVDAVWNGK---EALA 1142
Query: 106 LMINAA-GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
+ A GKN P D+ILMD QM +DG + ++R
Sbjct: 1143 YLEGAQDGKN-----------------PKPDIILMDVQMPVLDGYRTVHLLRHHFPYKTY 1185
Query: 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+PI+A TA + C +GMD +L KP + LL +V
Sbjct: 1186 VNDVPIVAMTASAIQGDRERCMQAGMDDYLAKPVKSKLLEKMLV 1229
>gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1]
gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1]
Length = 916
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 24/142 (16%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
S+LLVED V Q++ +LKK G V + +G+ A+ N
Sbjct: 791 SILLVEDNLVNQKVASLLLKKSGYEVDIANNGQEAL-----------------------N 827
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+S HY +ILMDC M DG A++ R E + ++ PIIA TA V D+ R C
Sbjct: 828 FLCDDSNHYHVILMDCMMPVKDGFTASQEFRLYEEQYNKART-PIIALTASVLDDDIRRC 886
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
SGMD +++KP + +L I
Sbjct: 887 TESGMDDYVSKPFNKTVLLEKI 908
>gi|91224277|ref|ZP_01259539.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
gi|91190619|gb|EAS76886.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
Length = 566
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 33/161 (20%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
IP EG + + VT E+ L G S+L+V+D + Q I +MLKKL L +
Sbjct: 423 IPLEEGQAQGTAEGELVT--IERSDLAGRSILVVDDIRMNQVIVTQMLKKLDITPDLKAN 480
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G+ A+EA+ S Y+LI MDC+M MDG +AT +R
Sbjct: 481 GKEALEAV-------------------------KSKDYELIFMDCRMPEMDGYEATMYLR 515
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
E G + PIIA TA T + ++C +SGMD L KP
Sbjct: 516 ------ERGFTHPIIALTAGTTIEERQKCIDSGMDDILTKP 550
>gi|406884947|gb|EKD32260.1| hypothetical protein ACD_77C00142G0007, partial [uncultured
bacterium]
Length = 1225
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 38/186 (20%)
Query: 41 EGSSSS--CPVNDDVTGVDEKKVLEG------LSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
EGS+ S P V +++++ L+ L VL+ ED A+ + + +L G
Sbjct: 1070 EGSTFSFILPFEKTVMKIEKEETLKRDTEIKPLRVLVAEDVALNKLLIKIILTDFGFEHE 1129
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+V +G+ A+E L+T+N YD+ILMD QM M+G +AT
Sbjct: 1130 IVSNGKIAIE----------------------KLQTNN---YDIILMDLQMPEMNGFEAT 1164
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ IR+ IPIIA TA VT + +C + GMD +++KP E+LL + IVE +
Sbjct: 1165 QYIRK-----TMKSQIPIIALTADVTTADISKCKDIGMDDYISKPINENLLYSKIVELVK 1219
Query: 213 RKSHKF 218
+++ K
Sbjct: 1220 KQNPKL 1225
>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 1111
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 24/173 (13%)
Query: 25 LEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
L FKP+ + +G+ + P +++ ++ K +G VLLVED V Q + +L
Sbjct: 946 LIFKPLTAIDLYDTLVKGTLAEQPKEVELSAINTPKKAKG-HVLLVEDNKVNQVVAGALL 1004
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
K+ + +DGE A+ + N T N+ Y LILMDCQM
Sbjct: 1005 KQAELTFDIAEDGEDALTKL--------------------NQATANT--YQLILMDCQMP 1042
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
MDG +AT IR A E ++IPIIA TA ++ +C N+GM+ +L+KP
Sbjct: 1043 IMDGYQATMAIREGLAGQE-NRAIPIIALTANAMHGDKEKCLNAGMNDYLSKP 1094
>gi|269967900|ref|ZP_06181941.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
gi|269827498|gb|EEZ81791.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
Length = 566
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 33/161 (20%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
IP EG + + VT E+ L G S+L+V+D + Q I +MLKKL L +
Sbjct: 423 IPLEEGQAQGTAEGELVT--IERSDLAGRSILVVDDIRMNQVIVTQMLKKLDITPDLKAN 480
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G+ A+EA+ S Y+LI MDC+M MDG +AT +R
Sbjct: 481 GKEALEAV-------------------------KSKDYELIFMDCRMPEMDGYEATMYLR 515
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
E G + PIIA TA T + ++C +SGMD L KP
Sbjct: 516 ------ERGFTHPIIALTAGTTIEERQKCIDSGMDDILTKP 550
>gi|392544053|ref|ZP_10291190.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1118
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 24/144 (16%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
S+LLVED + Q + + ML++LGA V ++GE A+ ++
Sbjct: 982 SILLVEDNRINQTVAMTMLERLGAKVVCQENGELAL----------------------TH 1019
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
L++ N P YD+ILMDCQM MDG +A + IR+ A + Q I+A TA + +C
Sbjct: 1020 LQSTNKP-YDVILMDCQMPVMDGYQAAQQIRQGVA-GKIHQHSVIVALTANAMQGDREKC 1077
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVE 209
++GMD +L KP L A +++
Sbjct: 1078 LDAGMDDYLTKPIDFDELKAKLLQ 1101
>gi|408419120|ref|YP_006760534.1| two component system sensor histidine kinase, hybrid [Desulfobacula
toluolica Tol2]
gi|405106333|emb|CCK79830.1| two component system sensor histidine kinase, hybrid [Desulfobacula
toluolica Tol2]
Length = 874
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 75 VLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG-SNLETHNSPH 133
++ R I KK + +V+D E + +I G +Q +G + H +
Sbjct: 579 IMTRYSILESKKYVRQILIVEDMETNLLTAKALIGKLG--YQTDVAKNGLEAINKHKNNS 636
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
YDLILMDCQM MDG ++TR IR E + +PIIA T V + ++CF +GMD F
Sbjct: 637 YDLILMDCQMPVMDGFESTRQIRENEKILKMDH-VPIIAMTGNVFEKDRQKCFKAGMDDF 695
Query: 194 LNKPAQEHLLAAAIVETIARKSH--KFSCDEQAEAQDEK 230
++KP + +L+ I + + K C E+ E + E+
Sbjct: 696 ISKPVEPDILSQKIRSNLTDRLQFVKKDCPEKFEDEYEQ 734
>gi|375146361|ref|YP_005008802.1| integral membrane sensor hybrid histidine kinase [Niastella
koreensis GR20-10]
gi|361060407|gb|AEV99398.1| integral membrane sensor hybrid histidine kinase [Niastella
koreensis GR20-10]
Length = 552
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 39/191 (20%)
Query: 22 GLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIG 80
G EF P +TN P A ++S+ N+ +L G +VL+ ED + Q++
Sbjct: 399 GSAFEFYLPYGLTNKQAPDAPATTSTQEYNN---------LLTGKNVLVAEDNEINQKLI 449
Query: 81 IRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140
+L+K G VT+ +GE AV+ H ++N YDLI+MD
Sbjct: 450 EFVLRKAGGAVTIASNGEEAVQ------------HLLEN------------KTYDLIIMD 485
Query: 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE 200
QM MDG T IR + + PIIA TA D + +C ++GM+ ++ KP +
Sbjct: 486 LQMPKMDGYATTYYIRH-----QLRLTTPIIAMTATAMKDEQWQCLHAGMNEYMTKPFEF 540
Query: 201 HLLAAAIVETI 211
L I++ +
Sbjct: 541 AELYKRIIQLV 551
>gi|345865191|ref|ZP_08817381.1| sensory/regulatory protein RpfC [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123689|gb|EGW53579.1| sensory/regulatory protein RpfC [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 1565
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 29/151 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED A+ + + + +L G V ++G AV M+ A
Sbjct: 1185 GSRILLVEDNAINREVAMELLSGAGLAVDTAENGREAVT----MVRATA----------- 1229
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDL+LMD QM MDG +ATRVIR + ++A ++PI+A TA V ++ +
Sbjct: 1230 ----------YDLVLMDIQMPEMDGREATRVIRSMASKA----ALPILAMTANVFEEDRQ 1275
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
C +GM+ F+ KP L + I + + ++
Sbjct: 1276 ACLEAGMNDFIAKPVDPESLFSTIAKWLPKR 1306
>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM
5476]
gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM
5476]
Length = 1068
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 29/157 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
G +LLVED + + I + +L+ GA V KDG AVE +
Sbjct: 939 FHGKHLLLVEDNQLNREIAVELLRITGAEVECAKDGIEAVELFS---------------- 982
Query: 122 HGSNLETHNSP--HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
SP HYDLILMD QM MDG +ATR IR+L+ + G S+PI+A TA A
Sbjct: 983 --------QSPVEHYDLILMDIQMPRMDGLEATRQIRKLD-RPDAG-SVPIVAMTANAFA 1032
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
++E + +GM+ L+KP +L A + + R H
Sbjct: 1033 EDEHKSKAAGMNAHLSKPLDIKILFAQM-KVFLRGDH 1068
>gi|157780820|gb|ABV71919.1| hypothetical protein [Brassica rapa subsp. pekinensis]
Length = 323
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+++D V +R+ LKK GA V + G+ A+ + +
Sbjct: 178 KSLLTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 225
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E EA+ + PI+A
Sbjct: 226 -------------PHSFDACFMDIQMPQMDGFEATRQIRMMEKEAKEKTKLEWHLPILAM 272
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 273 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 310
>gi|168016518|ref|XP_001760796.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162688156|gb|EDQ74535.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1165
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 24/138 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ +LL ED V Q++ + LKK G V +V DG+ ++A+ N
Sbjct: 1016 LRGMKILLAEDNIVNQKVACQQLKKFGTEVDVVSDGQQCLDALERDRNG----------- 1064
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YD+ILMD QM +DG +ATR IR +E E PII TA
Sbjct: 1065 ------------YDIILMDVQMPVLDGLQATRKIREIE-EKHNYPHKPIIGLTAHAIQGY 1111
Query: 182 ERECFNSGMDTFLNKPAQ 199
+ +C ++GMD + KP Q
Sbjct: 1112 KDKCLSAGMDAYACKPFQ 1129
>gi|428216794|ref|YP_007101259.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988576|gb|AFY68831.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 797
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 49/203 (24%)
Query: 1 MSIGKEQAETTSHPEKLE-----LEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTG 55
+++ + A+ + P KL L H L L+ P + I+P AE
Sbjct: 614 LALDRYFADHMTKPVKLSKLAETLRHVLNLDLDPT--LSEILPAAE-------------- 657
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V ++ L +LL ED V Q++ ++ML+KLG + ++G+ ++ M
Sbjct: 658 VKRQQQRTNLKILLAEDNLVNQKVALKMLEKLGYKADVAQNGQQVLQLMA---------- 707
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
+YDLILMDCQM +DG T+ IR E E + I+A TA
Sbjct: 708 ---------------RTNYDLILMDCQMPLLDGYATTQEIRNREGE---NRHTVIVAMTA 749
Query: 176 LVTADNERECFNSGMDTFLNKPA 198
++ ++C ++GMD +++KP
Sbjct: 750 NAMKEDRQKCLDAGMDDYISKPV 772
>gi|407067989|ref|ZP_11098827.1| sensor protein [Vibrio cyclitrophicus ZF14]
Length = 880
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L++ G + +G+ AV+ +T
Sbjct: 759 ILIVEDNLMNQKIASFFLEQAGYEYLIASNGQEAVDVIT--------------------- 797
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG ATR IR+ E + + +PIIA TA V ++ ++CF
Sbjct: 798 ---QGAQFDAILMDCMMPVMDGITATRAIRQWELDQQ-AIPLPIIALTASVLEEDIKDCF 853
Query: 187 NSGMDTFLNKPAQEHLL 203
+GM+ +L KP + H L
Sbjct: 854 EAGMNAYLPKPYKSHQL 870
>gi|361126097|gb|EHK98113.1| putative Two-component system protein A [Glarea lozoyensis 74030]
Length = 1020
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 17/144 (11%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED A+ Q+I ++ ++KLG V+ V +G+ A++ + +
Sbjct: 704 IKILLVEDNAINQQIALKTIRKLGFVVSAVWNGKEALDYL-----------------EAA 746
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ P D+ILMD QM +DG +AT +IR + IPI+A TA + +
Sbjct: 747 DSPKPPHPKPDIILMDVQMPIIDGYRATHLIRHHSPYNVMSRDIPIVAMTASAIQGDREK 806
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIV 208
C +GMD +L+KP + L +V
Sbjct: 807 CKKAGMDDYLSKPVKGKTLEKMLV 830
>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
Length = 916
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 52/197 (26%)
Query: 24 QLEFKPVPVTNN--------IIPQAEGSSSSCPVN---DDVTGVDEKKVLEGLSVLLVED 72
QL+ KP P T + PQ S PVN + VD+ ++LLV+
Sbjct: 629 QLQAKP-PCTRKLHKALVEMVCPQRAPGEPSAPVNGRRPQILCVDDNPA----NLLLVQT 683
Query: 73 QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132
+L LGA VT V G AA+EA+ HGS
Sbjct: 684 ----------LLDDLGAQVTAVDSGFAAIEAV----------------QHGS-------- 709
Query: 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT 192
+DL+ MD QM MDG +AT IR+ E E + + PIIA TA A+ +R SGMD
Sbjct: 710 -FDLVFMDVQMPGMDGRQATEAIRQWEGE-QGRSATPIIALTAHALANEKRTLLQSGMDD 767
Query: 193 FLNKPAQEHLLAAAIVE 209
+L KP E L I++
Sbjct: 768 YLTKPINERQLCQVILK 784
>gi|440477281|gb|ELQ58381.1| sensory/regulatory protein rpfC [Magnaporthe oryzae P131]
Length = 1354
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 46 SCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105
+ PV D++ D + + VLLVED ++Q+I I+ +KKLG V V +G+ EA+
Sbjct: 1032 ASPVLADLSMADRAE----MHVLLVEDNLIIQQIAIKNIKKLGFKVDAVWNGK---EALA 1084
Query: 106 LMINAA-GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
+ A GKN P D+ILMD QM +DG + ++R
Sbjct: 1085 YLEGAQDGKN-----------------PKPDIILMDVQMPVLDGYRTVHLLRHHFPYKTY 1127
Query: 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+PI+A TA + C +GMD +L KP + LL +V
Sbjct: 1128 VNDVPIVAMTASAIQGDRERCMQAGMDDYLAKPVKSKLLEKMLV 1171
>gi|365884941|ref|ZP_09423967.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. ORS 375]
gi|365286489|emb|CCD96498.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. ORS 375]
Length = 746
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 36/182 (19%)
Query: 31 PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLE---------------GLSVLLVEDQAV 75
P ++ +S + V DV G ++ E GLS+L+ ED +
Sbjct: 565 PFNGYLVKPLRAASLAARVGFDVDGAASTEIDEPVPMVAPPIAARAGAGLSILVAEDNDI 624
Query: 76 LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135
+ +L KLG + GEAA+++ L +AG +P YD
Sbjct: 625 NALLMRSLLTKLGHHADIAVHGEAALDSW-LAARSAG------------------TP-YD 664
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195
LILMD QM +DG A + IR LEA +E G+ PI+A TA ++ CF +GMD FL
Sbjct: 665 LILMDVQMPRLDGIAAAKRIRALEA-SEPGRRTPILALTANTLVEDRYACFEAGMDGFLV 723
Query: 196 KP 197
KP
Sbjct: 724 KP 725
>gi|119498321|ref|XP_001265918.1| two-component osmosensing histidine kinase (Bos1), putative
[Neosartorya fischeri NRRL 181]
gi|119414082|gb|EAW24021.1| two-component osmosensing histidine kinase (Bos1), putative
[Neosartorya fischeri NRRL 181]
Length = 1336
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1117 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1166
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1167 NHNVSVVGNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1201
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E EA ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1202 GFEATGKIREYEREAGLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQTI 1260
Query: 208 VE 209
++
Sbjct: 1261 LK 1262
>gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1225
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 42/158 (26%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D AV +R+ +L+K GA VT V+ G AA++ + L
Sbjct: 1085 ILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLKL-------------------- 1124
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAE----TGQS------------IP 169
PH +D MD QM MDG +ATR IR LE+E GQ+ IP
Sbjct: 1125 -----PHNFDACFMDLQMPEMDGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIP 1179
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
I+A TA T + EC GMD +++KP +E L A+
Sbjct: 1180 ILAMTADSTQSSNEECIKCGMDDYVSKPFEEEKLYMAM 1217
>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 724
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 28/157 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+V+D + Q I +L++LG + +G VEA+ + N
Sbjct: 587 LRLLIVDDHPLNQGIARMILRRLGFQADIAVNG---VEALDMTANR-------------- 629
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDL+ MDCQM MDG +ATR IR+ E + G I+A TA ++ ++
Sbjct: 630 --------NYDLVFMDCQMPEMDGFEATREIRKRE---KNGTRTTIVAMTASALEEDRQK 678
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCD 221
C + GMD +L KP + +A A+++ +K S D
Sbjct: 679 CLDIGMDDYLTKPVKPQEIAQALLDWCGQKKSGLSED 715
>gi|70989279|ref|XP_749489.1| two-component osmosensing histidine kinase (Bos1) [Aspergillus
fumigatus Af293]
gi|66847120|gb|EAL87451.1| two-component osmosensing histidine kinase (Bos1), putative
[Aspergillus fumigatus Af293]
gi|159128901|gb|EDP54015.1| two-component osmosensing histidine kinase (Bos1), putative
[Aspergillus fumigatus A1163]
Length = 1337
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1118 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1167
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1168 NHNVSVVGNGLEAVEAV-------------------------KKRRYDVILMDVQMPVMG 1202
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E EA ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1203 GFEATGKIREYEREAGLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQTI 1261
Query: 208 VE 209
++
Sbjct: 1262 LK 1263
>gi|338210180|ref|YP_004654227.1| histidine kinase [Runella slithyformis DSM 19594]
gi|336303993|gb|AEI47095.1| histidine kinase [Runella slithyformis DSM 19594]
Length = 511
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 35/156 (22%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+G+ VLLVED V ++ + L++ + + ++G+ AV+ AAGK
Sbjct: 390 LKGVKVLLVEDYPVNVKVATKFLERWQIVLDVAENGQVAVDKY-----AAGK-------- 436
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YD+ILMD QM MDG AT IR ++AE IPIIA TA T N
Sbjct: 437 ------------YDVILMDIQMPLMDGYTATAKIREMDAE------IPIIALTASATLSN 478
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
+ F GM+ ++ KP + + IA+ SH+
Sbjct: 479 QDRAFLVGMNDYVTKPFN----PKELFQKIAKYSHR 510
>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 572
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 71/150 (47%), Gaps = 31/150 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED Q++ + MLKK+G +G +EA+ L
Sbjct: 452 ILVAEDNVGNQKLILGMLKKIGLHADTANNG---IEALNLFQKGG--------------- 493
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLILMDCQM MDG + T IR+L E +TG PIIA TAL C
Sbjct: 494 -------YDLILMDCQMPEMDGFETTAEIRKL--EKKTGTHTPIIALTALSLQGARERCL 544
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
GMD +L+KP + LAA T+++ +H
Sbjct: 545 EVGMDDYLSKPLEIKPLAA----TLSKWTH 570
>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
Length = 974
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 42/180 (23%)
Query: 53 VTGVDEK----------KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102
V G+D+K ++L G +L+V+D V +R+ L K GA V + G A+
Sbjct: 807 VLGIDQKTQNGRSSGLGRLLSGKKILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALA 866
Query: 103 AMTLMINAAGKNHQIQNLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAE 161
+ + PH +D MD QM MDG +ATR+IR +E +
Sbjct: 867 FLQI-------------------------PHDFDACFMDIQMPEMDGFEATRLIREVEMK 901
Query: 162 AETGQSI----PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
A+ +++ PI+A TA V EC GMD +++KP QE L A+ + + SH+
Sbjct: 902 AKMEKNVEWHMPILAMTADVIHATLDECLKCGMDGYVSKPFQEKTLYQAVAKFFS--SHR 959
>gi|410663179|ref|YP_006915550.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
gi|409025536|gb|AFU97820.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
Length = 733
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 25/134 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLLV+D V Q + ML KLG V + +G A+ A+
Sbjct: 604 GRRVLLVDDHRVNQMVSKGMLGKLGYKVVIANNGREALAAL------------------- 644
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
P +DL+LMDCQM MDG +AT+ IRR E + +P++A TA ++
Sbjct: 645 -----EEQP-FDLVLMDCQMPEMDGYEATQAIRRKEQAQGVSKPLPVVAMTAHAGESDQA 698
Query: 184 ECFNSGMDTFLNKP 197
+C+ +GM +L KP
Sbjct: 699 KCYAAGMSDYLAKP 712
>gi|345566561|gb|EGX49504.1| hypothetical protein AOL_s00078g537 [Arthrobotrys oligospora ATCC
24927]
Length = 1240
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 32/173 (18%)
Query: 37 IPQAE-GSSSSCPVNDDVTGVDEKKVLE----GLSVLLVEDQAVLQRIGIRMLK-KLGAG 90
+P+AE G +SS P + E K L+ + VL+ ED V ++ +MLK + +
Sbjct: 1060 VPEAETGEASSGPAKKEKRSSKELKDLKDKRASIKVLVAEDNRVNIQVIKKMLKLEAVSD 1119
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
+TL +DG AV + + A GK +D+I MD QM +MDG +
Sbjct: 1120 ITLAEDGAVAVSRVKEAL-AVGKK-------------------FDIIFMDIQMPNMDGLQ 1159
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
AT+VIR E G + I A TA N +ECF++GMD FL KP +++ L
Sbjct: 1160 ATKVIR------EMGYASAICALTAFAEQSNVKECFDAGMDYFLAKPIKKNDL 1206
>gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida
LFI1238]
gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida
LFI1238]
Length = 891
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 25/143 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q++ L + G + +G+ A+E T
Sbjct: 772 ILIVEDNLVNQKVASLFLSRSGYTFEIANNGQEAIEKFT--------------------- 810
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S Y++ILMDC M DG AT+ IR LE +A+ + IPIIA TA V + +C+
Sbjct: 811 ---ESEAYNVILMDCMMPVKDGFSATKEIRLLE-KAQNRKKIPIIALTASVLDQDITKCY 866
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
SGMD ++ KP ++ +L I++
Sbjct: 867 ESGMDAYVAKPFKKEVLLNQIMK 889
>gi|398904235|ref|ZP_10652159.1| signal transduction histidine kinase [Pseudomonas sp. GM50]
gi|398176177|gb|EJM63907.1| signal transduction histidine kinase [Pseudomonas sp. GM50]
Length = 633
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 29/135 (21%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EGL+VLLVED AV + + ML+ LG V++V DG AV +
Sbjct: 513 EGLNVLLVEDNAVNRTVVEAMLRSLGFTVSVVTDGAQAVRSA------------------ 554
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
S +D ILMDC++ +DG +ATR IR+L A+ +PIIA TA +
Sbjct: 555 -------ESRTFDAILMDCRLPVIDGYEATRQIRQLPGCAD----VPIIALTANALQGDR 603
Query: 183 RECFNSGMDTFLNKP 197
C ++GM+ +L KP
Sbjct: 604 EACLSAGMNDYLAKP 618
>gi|168046338|ref|XP_001775631.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162673049|gb|EDQ59578.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1008
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 38/164 (23%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V +++ L K GA V V G AA++++
Sbjct: 864 QNLLTGKRILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSL-------------- 909
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEA----ETGQ------- 166
PH YD MD QM MDG +ATR+IR+ EA A + G+
Sbjct: 910 -----------KPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVDNWQAGRFSSFGRR 958
Query: 167 -SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+PI+A TA V EC GMD ++ KP EH L A+ +
Sbjct: 959 LHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHHLYQAVAK 1002
>gi|367036411|ref|XP_003648586.1| hypothetical protein THITE_2106215 [Thielavia terrestris NRRL 8126]
gi|346995847|gb|AEO62250.1| hypothetical protein THITE_2106215 [Thielavia terrestris NRRL 8126]
Length = 1183
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D + + R+LK + VT+ KDG+ A + ++ A +N+Q
Sbjct: 1005 LRVLVADDNSTNIEVFSRLLKLEDIYDVTVAKDGQEAYD----LVKANMENNQ------- 1053
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
H+DLI MD QM ++DG ++TR+IR++ G S PI+A TA N +
Sbjct: 1054 ---------HFDLIFMDIQMPNLDGLQSTRLIRKM------GYSAPIVALTAFSEESNVK 1098
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGM+ FL+KP + L
Sbjct: 1099 ECIASGMNEFLSKPIRRRAL 1118
>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 1702
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 67/141 (47%), Gaps = 27/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED V QR+ IR+L++ G VTL ++G AV A +
Sbjct: 1472 ILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAVAASEM-------------------- 1511
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD QM M G +AT IR E + PIIA TA ++ +C
Sbjct: 1512 -----KDFDLILMDVQMPHMGGFEATSTIRI--REKVMNKHTPIIAMTAHALQKDKEKCL 1564
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
N+GMD +L+KP L A I
Sbjct: 1565 NAGMDDYLSKPINPDQLRAVI 1585
>gi|428212540|ref|YP_007085684.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000921|gb|AFY81764.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1342
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P E S + P+ V + L +LL ED V Q + +R L+K+G LV++G
Sbjct: 1042 PPLEKSETFNPIPPRVVVSESSSPKLSLRILLAEDNPVNQEVAMRTLEKIGYRADLVQNG 1101
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR- 156
A+EA+ P YD++LMD +M MDG AT+ IR
Sbjct: 1102 LEALEAL------------------------RRQP-YDVVLMDIEMPQMDGLTATKRIRE 1136
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ E G IIA TA + ++CF +GMD ++ KP + LA+A+
Sbjct: 1137 EWQNRPEPGPK--IIAITAYAMEGDRQKCFAAGMDGYITKPFRIKALASAL 1185
>gi|357406883|ref|YP_004918807.1| BarA [Methylomicrobium alcaliphilum 20Z]
gi|351719548|emb|CCE25224.1| putative BarA [Methylomicrobium alcaliphilum 20Z]
Length = 935
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 79/175 (45%), Gaps = 36/175 (20%)
Query: 23 LQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIR 82
LQ KP + + P A +SS C D+ + E ++L+VED V Q +
Sbjct: 649 LQKCIKPSVLATDNCPGAGENSSRC----DLVKLPEA------AILVVEDNLVNQELAKA 698
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L L TL DG AVE T H+ +DLILMDCQ
Sbjct: 699 ILAGLECRTTLCADGAEAVEQFT----------------------EHD---FDLILMDCQ 733
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
M MDG AT IR LE E + ++ PIIA TA + + C GMD FL+KP
Sbjct: 734 MPVMDGYTATEKIRALECEQQRIKT-PIIALTAATISGDRERCATVGMDDFLSKP 787
>gi|398391352|ref|XP_003849136.1| histidine kinase [Zymoseptoria tritici IPO323]
gi|339469012|gb|EGP84112.1| histidine kinase [Zymoseptoria tritici IPO323]
Length = 875
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 44 SSSCPVNDDVTG-----------VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
S V+DDVTG ++ VLLVED + QRI R L+ G VT
Sbjct: 698 SGESKVSDDVTGNKSAEHQLPSRPKTQRTGSKAHVLLVEDNVINQRIVFRKLEAKGFNVT 757
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+G+ AV+A +N GS + + +D+ILMD +M MDG AT
Sbjct: 758 TANNGKEAVDAA-------------RNAPKGS---SGDKGAFDIILMDQEMPIMDGNAAT 801
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ IR LE E + +PI+ TA V + E N+GMD ++KP
Sbjct: 802 KAIRELEERGEV-ERVPILGVTANVRGAQQEEMLNNGMDDVISKP 845
>gi|428305762|ref|YP_007142587.1| response regulator receiver protein [Crinalium epipsammum PCC 9333]
gi|428247297|gb|AFZ13077.1| response regulator receiver protein [Crinalium epipsammum PCC 9333]
Length = 143
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 28/160 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L +LL ED + Q++ +MLK+LG L +G ++A+ HQ
Sbjct: 8 SLKILLAEDNVINQKVASQMLKQLGLKADLATNGLEVLDAL---------RHQ------- 51
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YD++LMD QM MDG +ATR IR+ E S IIA TA
Sbjct: 52 ---------QYDVVLMDVQMPEMDGIEATRQIRQ---EWNQENSPWIIAVTANTIGGVRE 99
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
EC N GM+ F++KP + +L A+ + A + +EQ
Sbjct: 100 ECLNVGMNDFISKPLNKDVLMEALSKCPASTPVSLTVNEQ 139
>gi|365886090|ref|ZP_09425058.1| putative Histidine kinase [Bradyrhizobium sp. STM 3809]
gi|365338438|emb|CCD97589.1| putative Histidine kinase [Bradyrhizobium sp. STM 3809]
Length = 829
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E L +L+ ED + Q + R+L + G +V +G+ AV A+
Sbjct: 688 EALEILVAEDNDINQNLIARLLARRGYRADMVGNGQDAVAAV------------------ 729
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YDL+LMD QM MDG ATRVIR L+ A +P++A TA
Sbjct: 730 -------KRKRYDLVLMDMQMPEMDGVTATRVIRDLDGSA---ADVPVVALTANALPSQR 779
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIV 208
C +GMD FL KP Q L AI+
Sbjct: 780 AVCIAAGMDDFLTKPIQPERLYDAIL 805
>gi|304312857|ref|YP_003812455.1| Sensor histidine kinase [gamma proteobacterium HdN1]
gi|301798590|emb|CBL46820.1| Sensor histidine kinase [gamma proteobacterium HdN1]
Length = 682
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 28/147 (19%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LLV+D V Q I L++LG + +GE A++A+ +++Q
Sbjct: 554 LLVDDNEVNQIIAKGALRRLGITADVTNNGEEAIDAV--------RDNQ----------- 594
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
YD ILMDC+M MDG +ATR+IR E + G+ IIA TA + + R+C
Sbjct: 595 ------YDFILMDCEMPIMDGFEATRLIRAWEQKC--GRHTTIIALTANSSDEIYRQCLQ 646
Query: 188 SGMDTFLNKPAQEHLLAAAIVETIARK 214
+GMD F+ KP + L AI++ IAR+
Sbjct: 647 AGMDDFMQKPFRADQL-QAILDRIARQ 672
>gi|229588558|ref|YP_002870677.1| putative response regulator receiver domain-containing protein
[Pseudomonas fluorescens SBW25]
gi|229360424|emb|CAY47281.1| putative response regulator, receiver domain [Pseudomonas
fluorescens SBW25]
Length = 294
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 27 FKPVPVTNNII------PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIG 80
F P N +I P S+S P+ +G +GLSVL+VED + +
Sbjct: 8 FLAGPFRNEVIMQPGSPPGGNAGSASLPLGPMTSGP------KGLSVLVVEDHPAYRMLL 61
Query: 81 IRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140
ML KLG +V DG+AA+ AM H+DLIL D
Sbjct: 62 GGMLHKLGVDREVVNDGQAALTAMI-------------------------DRHFDLILTD 96
Query: 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
CQM MDG +RR E A T +PIIA T+ + A C +G++ +L KP
Sbjct: 97 CQMPVMDGYALACEVRRRERLAHTA-PVPIIALTSTLEAAQIHRCLEAGINAWLVKP 152
>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 1407
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 30/151 (19%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EG+ +LL ED ++ Q++ I +L KLG + +V +G AV A
Sbjct: 1285 EGVRLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVRA------------------- 1325
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
LET +P YDL++MD QM MDG +ATR+IR ++ A IP+IA TA +
Sbjct: 1326 ---LET--TP-YDLVIMDLQMPEMDGLEATRIIRSPDS-AVLNHRIPVIALTAHTMEGDR 1378
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C ++GM +++KP +A +VETI +
Sbjct: 1379 ELCMHAGMTDYVSKPID----SAILVETIRK 1405
>gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417955975|ref|ZP_12598973.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342811495|gb|EGU46532.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 1037
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL +L+VED V Q + +L K+G T+ +G+ A+ ++
Sbjct: 912 GLQLLIVEDNRVNQIVITGVLHKMGLDSTIANNGKEALSVLS------------------ 953
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+S +D+ILMDCQM MDG +AT IR E + ++IPIIA TA + +
Sbjct: 954 ------SSKSFDIILMDCQMPEMDGYEATHRIRNGEG-GDNVKNIPIIAMTANAMESDRK 1006
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVE 209
C ++GM+ FL KP LL ++E
Sbjct: 1007 ACKDAGMNDFLTKPLNRSLLKEKLME 1032
>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
Length = 1252
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 29/169 (17%)
Query: 31 PVTNNIIPQAEGS--SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
PVT N++ QA S ++ + + + L+G+S+LLVED Q + +L++LG
Sbjct: 877 PVTKNMMLQAVESVVFGDLDLSLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLG 936
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
A + + GE A+E + + H+D++LMD QM MDG
Sbjct: 937 ATIKIASSGEEALEML-----------------------ESTAEHFDMVLMDIQMPGMDG 973
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ TR IR+L Q +PIIA TA +D+ C +GM + KP
Sbjct: 974 YQTTREIRKLPRH----QLLPIIAITAHAMSDDIAACLAAGMQDHIAKP 1018
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 42/155 (27%)
Query: 63 EGLSVLLVED----QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
E LSVL+V+D + +LQ I + LG + D + A +L++ A ++
Sbjct: 765 EKLSVLIVDDNDSARIILQGIAV----SLGWQAKIASDAQEA----SLLVKQAHRD---- 812
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YD++ +D +M DG R +R L + +++ ++T
Sbjct: 813 ------------STRYDVVFVDWRMPGKDGLTFARELRELHSS--------VVSLIVMIT 852
Query: 179 A------DNERECFNSGMDTFLNKPAQEHLLAAAI 207
A D + + +D FL KP ++++ A+
Sbjct: 853 AHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAV 887
>gi|359779983|ref|ZP_09283210.1| sensor/response regulator hybrid [Pseudomonas psychrotolerans L19]
gi|359372599|gb|EHK73163.1| sensor/response regulator hybrid [Pseudomonas psychrotolerans L19]
Length = 922
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V+ G AAVEA+ +DL+ MD Q
Sbjct: 687 LLTDLGAQVTAVESGYAAVEAV-------------------------QQERFDLVFMDVQ 721
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IR EA +E G +PI+A TA A+ +R SGMD +L KP +
Sbjct: 722 MPGMDGRQATEAIRDWEA-SEGGTPVPIVALTAHAMANEKRALLQSGMDDYLTKPISDRQ 780
Query: 203 LAAAIVE 209
LA I++
Sbjct: 781 LAQVILK 787
>gi|121710420|ref|XP_001272826.1| two-component osmosensing histidine kinase (Bos1), putative
[Aspergillus clavatus NRRL 1]
gi|119400976|gb|EAW11400.1| two-component osmosensing histidine kinase (Bos1), putative
[Aspergillus clavatus NRRL 1]
Length = 1341
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1122 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1171
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1172 NHNVSVVGNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1206
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E EA ++ PIIA TA + +C + MD +L+KP +++ + I
Sbjct: 1207 GFEATGKIREYEREAGLSRT-PIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQTI 1265
Query: 208 VE 209
++
Sbjct: 1266 LK 1267
>gi|153838245|ref|ZP_01990912.1| signal transduction histidine kinase, partial [Vibrio
parahaemolyticus AQ3810]
gi|149748377|gb|EDM59236.1| signal transduction histidine kinase [Vibrio parahaemolyticus
AQ3810]
Length = 364
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 28/132 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ ML++LG V++ GE EA+ L A
Sbjct: 237 VLIVEDTEVNQRVVRIMLEQLGLKVSVASHGE---EALQLCREHA--------------- 278
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG AT IR + E G +PIIA TA V ++++ CF
Sbjct: 279 -------FDLIFMDCQMPVMDGFIATEQIRDMN---EWGAHVPIIALTANVVKEDQQRCF 328
Query: 187 NSGMDTFLNKPA 198
+GM+ F+ KP
Sbjct: 329 EAGMNEFVAKPV 340
>gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella
aurantiaca DW4/3-1]
gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella
aurantiaca DW4/3-1]
Length = 603
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 46/204 (22%)
Query: 15 EKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTG-----------VDEKKVLE 63
+KL HG ++ + VP EGSS + V + + + + L+
Sbjct: 272 QKLLALHGSKMRVESVP--------GEGSSFAFDVRLKIASGAVALDAPAEDLQDTQTLQ 323
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VL+ ED AV + + L++ G +V++G AVE Q+Q
Sbjct: 324 GLKVLVAEDTAVNVFVLSQFLRRWGVDFDVVENGRRAVE-------------QVQ----- 365
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YDL+LMD QM MDGC+ATR++RRL E G+ +PIIA TA +
Sbjct: 366 -------ARPYDLVLMDLQMPQMDGCEATRLLRRL--PGERGRHLPIIALTASALLGTDA 416
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAI 207
+ ++G + KP L A +
Sbjct: 417 QVADAGFTDVIGKPFMPRELFAKL 440
>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
Length = 1118
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 43 SSSSCPVNDDVTGVDEKK-VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAV 101
S P N ++ D + G VLL ED A Q +G +L+ LG V + +G A+
Sbjct: 803 SQPFFPANPEMQAADSSNGLFAGTRVLLAEDNATNQIVGAMILRNLGCLVDVATNGREAM 862
Query: 102 EAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE 161
E M++A YD++ MDC+M MDG +AT +RR
Sbjct: 863 E----MVDAF---------------------LYDMVFMDCEMPEMDGFEATAALRR---R 894
Query: 162 AETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
++ +P+IA TA + C +GMD +++KP + AAA+
Sbjct: 895 PDSKSRLPVIAVTAQAMQGDRERCLRAGMDDYISKPVKLEDFAAAL 940
>gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB]
gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB]
Length = 1026
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 30/150 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKL-GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+LL ED+ V + + + +L + G V + ++GE A
Sbjct: 903 LLLAEDEPVNREVMLDLLSDIPGLRVDIAENGERA------------------------- 937
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
E ++ HYDLILMD QM MDG +ATR IR+L AET PI+A TA V ++ C
Sbjct: 938 FELASTRHYDLILMDMQMPKMDGLEATRAIRQLSGYAET----PILATTANVFNEDRERC 993
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
SGM F+ KP + LL + +A S
Sbjct: 994 IESGMSDFITKPVEPGLLYTKLSSWLAANS 1023
>gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
Length = 632
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 28/132 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ ML++LG V++ GE A++ + H
Sbjct: 505 VLIVEDTEVNQRVVRIMLEQLGLKVSVASHGEEALQLC--------REHA---------- 546
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG AT IR + E G +PIIA TA V ++++ CF
Sbjct: 547 -------FDLIFMDCQMPVMDGFIATEQIRDMN---EWGAHVPIIALTANVVKEDQQRCF 596
Query: 187 NSGMDTFLNKPA 198
+GM+ F+ KP
Sbjct: 597 EAGMNEFVAKPV 608
>gi|343508875|ref|ZP_08746181.1| Signal transduction histidine kinase [Vibrio scophthalmi LMG 19158]
gi|342806656|gb|EGU41874.1| Signal transduction histidine kinase [Vibrio scophthalmi LMG 19158]
Length = 1070
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED +V Q+I L K G + DG+ AV+ M A
Sbjct: 779 VLVVEDNSVNQKIAGLHLVKAGLEFDIANDGQEAVD----MYRATPD------------- 821
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG AT +R+LE + IPIIA TA V D+ + CF
Sbjct: 822 ------RYALILMDCMMPIMDGFAATTELRKLERH--LNRRIPIIALTASVIDDDVQRCF 873
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + ++L I I
Sbjct: 874 DVGMDDYIAKPFRANVLQEKIFNLI 898
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 25/134 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ ML K G + ++G+ A++ +
Sbjct: 951 ILLVEDNRVNQKVASLMLDKAGFHYAIAENGQIAIDMYS--------------------- 989
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M DG +AT+ IR+ EA ++ PIIA TA V D+ + CF
Sbjct: 990 ---EDSSFDVILMDCMMPVKDGFEATKEIRQHEANLGLTKT-PIIALTASVIDDDIQRCF 1045
Query: 187 NSGMDTFLNKPAQE 200
+SGMD ++ KP ++
Sbjct: 1046 DSGMDAYVAKPVRK 1059
>gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
Length = 631
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 29/135 (21%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+G +VLLVED V Q + ML+ LG V+LV DG+ A++++ H
Sbjct: 508 DGQAVLLVEDNPVNQTVIEAMLRSLGYQVSLVGDGQQALQSVA---------------QH 552
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y ILMDC++ MDG +ATR IR + +GQ IPIIA TA +
Sbjct: 553 A----------YAAILMDCRLPLMDGYEATRRIR----QQASGQQIPIIALTANALQGDR 598
Query: 183 RECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 599 EACLAAGMNDYLAKP 613
>gi|453085745|gb|EMF13788.1| hypothetical protein SEPMUDRAFT_84970 [Mycosphaerella populorum
SO2202]
Length = 1488
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 22/145 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V Q+I ++ +KKLG V V +G+ A+E ++
Sbjct: 1166 VLVVEDNPVNQQIALKTIKKLGFPVRAVWNGQEALEYLSS-------------------- 1205
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG--QSIPIIAFTALVTADNERE 184
+ P +ILMD QM MDG +AT IR +A + QS PIIA TA + +
Sbjct: 1206 PSPERPRPQVILMDVQMPIMDGYRATWTIRNDKAFVQNADVQSAPIIAMTASAIQGDREK 1265
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
C +GMD +L KP ++ +L +++
Sbjct: 1266 CQAAGMDDYLAKPVKKPMLEKMLIK 1290
>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis histidine
kinase 4; Short=AtHK4; AltName: Full=Cytokinin receptor
CYTOKININ RESPONSE 1; Short=AtCRE1; Short=Cytokinin
receptor CRE1; AltName: Full=Phosphoprotein phosphatase
AHK4; AltName: Full=Protein AUTHENTIC HIS-KINASE 4;
AltName: Full=Protein ROOT AS IN WOL 1; AltName:
Full=Protein WOODEN LEG
gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1080
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+V+D V +R+ LKK GA V + G+ A+ + +
Sbjct: 939 KSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 986
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E E + ++ PI+A
Sbjct: 987 -------------PHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAM 1033
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1034 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1071
>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1011
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 27/142 (19%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EGL +++ ED V QR+ +L K+G T+V++G+ EA+TL
Sbjct: 764 EGLDIMVAEDSPVNQRVISHVLHKMGHSFTIVENGQ---EAVTLW--------------- 805
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
E N ++ ILMD QM MDG +ATR IR L+ E +PIIA TA +
Sbjct: 806 ----EKRN---FNAILMDVQMPIMDGIEATRRIRALDTHREN--PVPIIALTAHAMQSDR 856
Query: 183 RECFNSGMDTFLNKPAQEHLLA 204
C ++GM+ +L+KP +LA
Sbjct: 857 ERCLDAGMNDYLSKPLDPGMLA 878
>gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 878
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L K G + +G+ A+EA+T
Sbjct: 757 ILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAIT--------------------- 795
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG AT+ IRR E E +G++ IIA TA V ++ + CF
Sbjct: 796 ---KGEQFDAILMDCMMPVMDGLTATKEIRRWEKEVGSGKT-TIIALTASVLEEDIQNCF 851
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 852 AAGMDAYLPKPYKSNQL 868
>gi|443475295|ref|ZP_21065249.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019885|gb|ELS33914.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 850
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 31/182 (17%)
Query: 28 KPVP---VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
KPV + N++I G S+ +E K+ L +LLVED + Q++ I L
Sbjct: 539 KPVRKLRLLNSLINTISGKSAKLIDQPPEFMAEEVKLPSQLKILLVEDSPINQKVTINQL 598
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
LG V +V +G+ A++ + + Y +ILMDCQM
Sbjct: 599 HNLGYRVDVVANGQEALDIL-------------------------DKISYSIILMDCQMP 633
Query: 145 SMDGCKATRVIRRLEAEAE-TGQSIPIIAFTA-LVTADNERECFNSGMDTFLNKPAQEHL 202
MDG +R IR EA G + IIA TA + AD +R C +GMD FL+KP ++
Sbjct: 634 VMDGYVTSRRIREREASQNLAGAGVAIIALTANAMKADRDR-CIAAGMDDFLSKPVRKQD 692
Query: 203 LA 204
LA
Sbjct: 693 LA 694
>gi|296137724|ref|YP_003644968.1| sensory box histidine kinase/response regulator [Salinibacter ruber
M8]
gi|295981893|emb|CBH22851.1| sensory box histidine kinase/response regulator [Salinibacter ruber
M8]
Length = 1501
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 30/151 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +L+VED Q + +L GA V +V DG AA+E ++AA
Sbjct: 1232 LNGARLLVVEDNETNQVVVRDLLVGWGAEVDVVGDGVAALE----RLDAAA--------- 1278
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YDL+LMD QM MDG +ATR +R + +P+IA TA + +N
Sbjct: 1279 ------------YDLVLMDVQMPRMDGLEATRRLRH-----DLDSDVPVIALTASMLREN 1321
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+E F +GMD F++KP + L + E ++
Sbjct: 1322 RQEAFAAGMDAFVSKPFKSESLCRTVAEHLS 1352
>gi|257455156|ref|ZP_05620394.1| sensory box histidine kinase/response regulator [Enhydrobacter
aerosaccus SK60]
gi|257447489|gb|EEV22494.1| sensory box histidine kinase/response regulator [Enhydrobacter
aerosaccus SK60]
Length = 912
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 29/141 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q+I + L+ LG + DGE AV+ L
Sbjct: 796 ILIAEDNPVNQKIAKKHLEALGYRYLVASDGEQAVK-----------------------L 832
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ N L+LMDC+M +DG +ATR+IR S+PI+A TA + D++ C
Sbjct: 833 LSENRQQIGLVLMDCRMPILDGIEATRIIRL------NKDSVPIVALTANDSDDDKNICL 886
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD+FL KP + L AI
Sbjct: 887 EAGMDSFLTKPINKQKLIEAI 907
>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 914
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 28/133 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V QR+ +R+L+K G V + DG A+EA+
Sbjct: 665 VLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAV---------------------- 702
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+YD++ MD QM MDG AT IR++ A +PIIA TA + +C
Sbjct: 703 ---KKDNYDVVFMDIQMPGMDGYAATATIRKM---APRFSELPIIAMTAHAMKGDREKCI 756
Query: 187 NSGMDTFLNKPAQ 199
SGMD +++KP +
Sbjct: 757 ASGMDDYISKPVK 769
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 24/156 (15%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
+ ++ + G VL+V+D A + I + L G ++ E+ EAM L+
Sbjct: 500 IKPRQSVRGSHVLIVDDNATNRTILNKTLVSFGC---FPEEAESGGEAMELLA------- 549
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
Q + G +D +L+D QM MDG R IR T I+ T+
Sbjct: 550 --QRMAEGR--------PFDAVLLDHQMPEMDGEAVVRAIRSKPGNENT----RILILTS 595
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ + R + G +LNKP ++ LL A+ ET+
Sbjct: 596 VGERGDARRFKDLGCCAYLNKPVRQSLLLDALAETL 631
>gi|343508024|ref|ZP_08745391.1| Signal transduction histidine kinase [Vibrio ichthyoenteri ATCC
700023]
gi|342795525|gb|EGU31244.1| Signal transduction histidine kinase [Vibrio ichthyoenteri ATCC
700023]
Length = 1065
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 25/141 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q++ ML K G + ++G+ A++ +
Sbjct: 946 VLLVEDNRVNQKVASLMLDKAGFSYAIAENGQIAIDMYS--------------------- 984
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YD+ILMDC M DG +ATR IR+ E ++ PIIA TA V D+ + CF
Sbjct: 985 ---QDSGYDVILMDCMMPIKDGFEATREIRQHELNLGLVKT-PIIALTASVIDDDIQRCF 1040
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+SGMD ++ KP ++ L I
Sbjct: 1041 DSGMDAYVAKPVRKDNLIGKI 1061
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ + VL+VED +V Q+I L K G + DG+ AV+ M AA
Sbjct: 767 QSMRVLVVEDNSVNQKIAGLHLVKAGFEFDIANDGQEAVD----MYRAA----------- 811
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y LILMDC M MDG +AT +R+LE + PIIA TA V D+
Sbjct: 812 --------PTKYALILMDCMMPIMDGFEATVQLRKLEQGYQ--HRTPIIALTASVIDDDI 861
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ CF+ GMD ++ KP + ++L I ++
Sbjct: 862 QRCFDVGMDDYIAKPFKANVLQEKIFNLVS 891
>gi|443477391|ref|ZP_21067242.1| response regulator receiver protein [Pseudanabaena biceps PCC 7429]
gi|443017487|gb|ELS31915.1| response regulator receiver protein [Pseudanabaena biceps PCC 7429]
Length = 140
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L S+LL ED V Q++ +R+LK LG +V +G+ A+ A+
Sbjct: 11 LSRFSILLAEDNPVNQKVAMRVLKHLGYEADIVGNGQEAIAAI----------------- 53
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
YDLILMD QM MDG +AT+ IR E A I I+A TA T D+
Sbjct: 54 --------EDKAYDLILMDIQMPEMDGIQATKHIRDRE-NASQLPPIAIVAMTANATDDD 104
Query: 182 ERECFNSGMDTFLNKPAQ 199
+ C ++GM +++KP Q
Sbjct: 105 QNICRDAGMSDYISKPIQ 122
>gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
Length = 752
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 21/152 (13%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ LS+L+ ED + + +L +LG V L +GE A+E+ AAG
Sbjct: 618 QSLSILVAEDNEINALLIRSLLTRLGHDVILAANGEKALESWV----AAG---------- 663
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
T +P YDL+LMD QM +DG + T+ IR EA + G I+A TA D+
Sbjct: 664 -----TAGAP-YDLVLMDVQMPKLDGVETTKRIREREA-GQRGSRTTILALTANALLDDR 716
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GMD FL KP LA A+ +A +
Sbjct: 717 SACFEAGMDGFLVKPLDRDKLADALAGLMAAR 748
>gi|159128617|gb|EDP53731.1| osmolarity two-component system protein sln1 [Aspergillus fumigatus
A1163]
Length = 1080
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 47/210 (22%)
Query: 4 GKEQAETTSHPEKLELEH---GLQLEF------KPVPVTNNIIPQAEGSSSSCPVNDDVT 54
G +++ ++ EK EL+ GL F P P T P A+G+ V D+ +
Sbjct: 888 GSVRSDPLTNFEKQELQPRLVGLSQPFFTLTPSSPAPSTPRATP-ADGAKPE--VKDNTS 944
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGK 113
G + VL+ ED V Q + +RML+ + VT+VKDG+ A + +
Sbjct: 945 G--------KVRVLVAEDNVVNQEVVLRMLRLEEVYDVTVVKDGQEAYDTVK-------- 988
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAF 173
N+ G +D+I MD QM ++DG ++TR+IR + G S PI+A
Sbjct: 989 ----ANMEEGK--------VFDVIFMDIQMPNLDGLESTRLIRGM------GYSAPIVAL 1030
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLL 203
+A N ++C +SGMD F++KP + L
Sbjct: 1031 SAFSEESNIKDCMDSGMDMFISKPIRRPAL 1060
>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1057
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+V+D V +R+ LKK GA V + G+ A+ + +
Sbjct: 916 KSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 963
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E E + ++ PI+A
Sbjct: 964 -------------PHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAM 1010
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1011 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1048
>gi|384214345|ref|YP_005605508.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 6]
gi|354953241|dbj|BAL05920.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 6]
Length = 744
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 21/144 (14%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GLS+L+ ED + + +L KLG V + GEAA+E+ L ++AG
Sbjct: 611 GLSILVAEDNEINALLMRSLLTKLGHRVVIAVHGEAALESW-LAASSAG----------- 658
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+P YDL+LMD QM +DG +AT+ IR EA A+ G PI+A TA ++
Sbjct: 659 -------TP-YDLVLMDIQMPQLDGIEATKRIRTHEA-AKGGHHTPILALTANTLVEDRY 709
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAI 207
CF +GM+ FL KP L A+
Sbjct: 710 ACFEAGMNGFLIKPLDRDKLDEAL 733
>gi|372488219|ref|YP_005027784.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359354772|gb|AEV25943.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 940
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 29/151 (19%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
++ G +VLL ED+ + Q I ML+ +G V L DG+ AVE A G +
Sbjct: 813 RQEFAGRTVLLAEDEPINQEITKFMLEDVGLRVELAPDGKVAVE------RARGND---- 862
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
Y LILMD QM MDG ATR IR+L+ +T PI+A TA
Sbjct: 863 ---------------YALILMDMQMPLMDGLDATREIRQLQRHRQT----PILAMTANAF 903
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
A+++ C +GM+ F+ KP +L A +++
Sbjct: 904 AEDKARCLGAGMNDFIAKPVNPDVLYATLLQ 934
>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
Length = 946
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 28/148 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED + Q++ + ML++LG VT+ ++G AV+A+
Sbjct: 675 LRILLAEDNKINQKVALAMLEQLGHSVTIAENGLQAVDAV-------------------- 714
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
H+D++LMD QM +DG ATR IR L A IPIIA TA ER+
Sbjct: 715 -----RRGHFDVVLMDIQMPELDGVGATRGIRALPAPK---CDIPIIAMTANAMEGAERK 766
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ GMD +++KP + +L A + + A
Sbjct: 767 YLDCGMDDYISKPVRRDILFAKLAKVSA 794
>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1771
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED V Q++ MLKKLG V +G A++A+ ++
Sbjct: 1520 VRILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAEALKALEMI----------------- 1562
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDL+LMD QM MDG ATR+I R A + +PIIA TA +
Sbjct: 1563 --------PYDLVLMDVQMPEMDGLAATRLI-RYSGSAVLNKDVPIIAMTAHAMKGDRER 1613
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI---VETIARKSHK 217
SGMD +++KP L + + TI R+ H+
Sbjct: 1614 FIESGMDDYISKPVSMEALKRVLDKWLATIQREGHE 1649
>gi|383768453|ref|YP_005447516.1| two-component hybrid sensor and regulator [Bradyrhizobium sp.
S23321]
gi|381356574|dbj|BAL73404.1| two-component hybrid sensor and regulator [Bradyrhizobium sp.
S23321]
Length = 743
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 21/152 (13%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+GLS+L+ ED + + +L KLG V + DGEAA+E+ L ++AG
Sbjct: 609 KGLSILVAEDNEINALLMRSLLTKLGHRVVIAIDGEAALESW-LAASSAG---------- 657
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+P YDL+LMD QM +DG + T+ IR EA A G PI+A TA ++
Sbjct: 658 --------AP-YDLVLMDIQMPRLDGIETTKRIRAHEAAA-GGHHTPILALTANTLVEDR 707
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GM+ FL KP L A+ A +
Sbjct: 708 YACFEAGMNGFLIKPLDRDKLDEALAGLAASR 739
>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1519
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 27/133 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED A+ QR+ + +LKK G V +V +G A+ AM
Sbjct: 1271 LRLLLAEDNAINQRLAMALLKKQGHQVVVVNNGREALAAM-------------------- 1310
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
N +D +LMD QM MDG +AT IR EA TG IIA TA +
Sbjct: 1311 -----NGSRFDAVLMDVQMPEMDGFEATAAIR--SREAGTGVHTTIIAMTAHALKGDRDR 1363
Query: 185 CFNSGMDTFLNKP 197
C ++GMD +++KP
Sbjct: 1364 CLDAGMDAYVSKP 1376
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E + + GL VL+V+D A +RI ML G T V G EA+ + A G
Sbjct: 1112 EPEQVHGLPVLIVDDNATNRRILEEMLTNWGMKPTTVAGGR---EAIATLAEARGAGRP- 1167
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+ L+L+D M MDG I+ + A TG ++ ++
Sbjct: 1168 ----------------FALVLLDAMMPGMDGFTLAEQIK--QDSALTGSTL------MML 1203
Query: 178 TADNERE----CFNSGMDTFLNKPAQEHLLAAAIVETIA 212
++ N RE C G+ T+L KP +E L AI+ T+
Sbjct: 1204 SSANRREDAARCQELGVATYLMKPIRESSLLDAIMTTLG 1242
>gi|146322714|ref|XP_001481640.1| sensor histidine kinase/response regulator TcsB/Sln1 [Aspergillus
fumigatus Af293]
gi|129556766|gb|EBA27302.1| sensor histidine kinase/response regulator TcsB/Sln1, putative
[Aspergillus fumigatus Af293]
Length = 1096
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 41/207 (19%)
Query: 4 GKEQAETTSHPEKLELEHGL----QLEFKPVPVTNNI-IPQAEGSSSSCP-VNDDVTGVD 57
G +++ ++ EK +L+ L Q F P P + P+A + + P V D+ +G
Sbjct: 901 GSVRSDPLTNFEKQDLQPRLVGLSQPFFTPTPSSPAPSTPRATPADGAKPEVKDNTSG-- 958
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+ VL+ ED V Q + +RML+ + VT+VKDG+ A + +
Sbjct: 959 ------KVRVLVAEDNVVNQEVVLRMLRLEEVYDVTVVKDGQEAYDTVK----------- 1001
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
N+ G +D+I MD QM ++DG ++TR+IR + G S PI+A +A
Sbjct: 1002 -ANMEEGK--------VFDVIFMDIQMPNLDGLESTRLIRGM------GYSAPIVALSAF 1046
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLL 203
N ++C +SGMD F++KP + L
Sbjct: 1047 SEESNIKDCMDSGMDMFISKPIRRPAL 1073
>gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
Length = 798
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 25/142 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q++ L G + +G+ AVE T
Sbjct: 679 ILIVEDNLVNQKVASLFLGNSGYTFDIANNGQEAVEKFT--------------------- 717
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+S Y++ILMDC M DG AT+ IR++E + + + IPIIA TA + + +C+
Sbjct: 718 ---DSEAYNIILMDCMMPVKDGFTATKEIRKVE-KNQKRKKIPIIALTASILDQDISKCY 773
Query: 187 NSGMDTFLNKPAQEHLLAAAIV 208
SGMD F+ KP ++ +L I+
Sbjct: 774 ESGMDDFIAKPFKKEILLEKIM 795
>gi|154290421|ref|XP_001545806.1| hypothetical protein BC1G_15680 [Botryotinia fuckeliana B05.10]
Length = 486
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 21/146 (14%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+VED A+ Q+I ++ ++KLG + V +G+ EA+ ++ A
Sbjct: 9 VKVLVVEDNAINQQIALKTIRKLGFSPSAVWNGK---EALDYLLAA-------------- 51
Query: 125 NLETHNSPHY--DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
++ N PH D+ILMD QM +DG +AT ++R + IPI+A TA +
Sbjct: 52 --DSPNPPHPKPDIILMDVQMPIIDGYRATHILRHHSPYRYSACDIPIVAMTASAIQGDR 109
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIV 208
+C +GMD +L KP + L +V
Sbjct: 110 EKCQKAGMDDYLAKPVKGKTLEKMLV 135
>gi|398390113|ref|XP_003848517.1| histidine kinase sensor, partial [Zymoseptoria tritici IPO323]
gi|339468392|gb|EGP83493.1| histidine kinase sensor [Zymoseptoria tritici IPO323]
Length = 1069
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK--KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
L +L+ ED V Q + RML+ K+ +T+ DG A+ H
Sbjct: 946 LRILVAEDNKVNQEVIQRMLRLEKI-QHITIASDGRIALG------------------HI 986
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
S+ T + P +DLILMD QM +MDG +ATR IR AE G PI+A TA N
Sbjct: 987 ISSHATPDHPPFDLILMDIQMPNMDGLQATRKIR-----AE-GFKNPIVALTAFAEQSNV 1040
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVE 209
ECF +GMD FL KP + L +V+
Sbjct: 1041 EECFGAGMDFFLAKPVKRAKLKDVLVQ 1067
>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1772
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98
+ E S P+ ++T K+ + + VLL ED V Q++ MLKKLG V +G
Sbjct: 1498 ETEKQMSHSPLTMNLTS---KRGINNVRVLLAEDNIVNQKVAQSMLKKLGFRADTVANGA 1554
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
AV+A+ + YDL+LMD QM MDG +ATR+IR+
Sbjct: 1555 EAVKALETL-------------------------PYDLVLMDVQMPEMDGMEATRLIRQ- 1588
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
A + IPIIA TA + +GMD +++KP
Sbjct: 1589 PGSAVLNREIPIIAMTAHAMKGDRERFIEAGMDDYISKP 1627
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 57 DEKKVLEG----LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
D KK++ G +L+V+D A + I I L G+ DG A++A+
Sbjct: 1361 DRKKIMSGDIQSARILVVDDNATNREILINQLSSWGSRAKEAVDGPMALQALY------- 1413
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
K ++ N P + + L+D QM MDG R+I+ E T +I
Sbjct: 1414 KAYE------------DNEP-FQVALLDMQMPGMDGATLARIIKSDEKLKNTH----LIM 1456
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
+++ ++ S + +L KP ++ L + ++ ++ K
Sbjct: 1457 LSSMGQWSASQQLEKSYFEAYLTKPVRQSSLLDKLSSILSMETEK 1501
>gi|356503926|ref|XP_003520750.1| PREDICTED: histidine kinase CKI1-like [Glycine max]
Length = 1056
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+K L G+ L+VED +L+RI L +LGA V ++GE AV Q
Sbjct: 921 EKPLWGMKCLVVEDVVLLRRITKSTLDRLGASVMECENGEQAV----------------Q 964
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+ G + N P D ILMDCQM MDG +ATR IR E E G IPI A TA T
Sbjct: 965 TVEEGLTRNSSNRP-CDFILMDCQMPVMDGYEATRRIR--EIEKSHGVHIPIFALTA-NT 1020
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+GMD L KP + L AI
Sbjct: 1021 GKEAILSIEAGMDDHLIKPINKEALLKAI 1049
>gi|452836540|gb|EME38484.1| hypothetical protein DOTSEDRAFT_75869 [Dothistroma septosporum NZE10]
Length = 1427
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 22/149 (14%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ ++VL+VED A+ Q+I ++ ++KLG V V +G+ A++ ++A K
Sbjct: 1110 QSVNVLVVEDNAINQQIALKTIRKLGFPVRAVWNGKEALD----YLSAPSKEQ------- 1158
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG--QSIPIIAFTALVTAD 180
P D+ILMD QM MDG KAT IR + A Q PI+A TA
Sbjct: 1159 ---------PRPDIILMDVQMPIMDGYKATYTIRNAQPFAHNPEMQGTPIVAMTASAIQG 1209
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVE 209
+ +C +GMD +L KP ++ L +++
Sbjct: 1210 DREKCQAAGMDDYLAKPVKKPNLEKMLIK 1238
>gi|308125497|ref|ZP_07663416.1| hybrid signal transduction histidine kinase J [Vibrio
parahaemolyticus K5030]
gi|308112027|gb|EFO49567.1| hybrid signal transduction histidine kinase J [Vibrio
parahaemolyticus K5030]
Length = 381
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 28/132 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ ML++LG V++ GE A + + H
Sbjct: 254 VLIVEDTEVNQRVVRIMLEQLGLKVSVASHGEEAFQLC--------REHA---------- 295
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG AT IR + E G +PIIA TA V ++++ CF
Sbjct: 296 -------FDLIFMDCQMPVMDGFIATEQIRDMN---EWGAHVPIIALTANVVKEDQQRCF 345
Query: 187 NSGMDTFLNKPA 198
+GM+ F+ KP
Sbjct: 346 EAGMNEFVAKPV 357
>gi|428215875|ref|YP_007089019.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004256|gb|AFY85099.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1694
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 28/157 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+++L+ ED + Q + + L+ LG V +G A+EA+T
Sbjct: 1415 AINILVAEDNLINQTVILSQLEMLGYQPDCVTNGIEALEAIT------------------ 1456
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDL+LMDCQM MDG AT+ +RR E E + +IA TA + +
Sbjct: 1457 -------QKTYDLVLMDCQMPVMDGYAATKELRRRE---EAQRHTIVIALTANAMRGDRQ 1506
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
+C ++GMD +L+KP + LAAAI I +K +C
Sbjct: 1507 KCLDAGMDDYLSKPIEREDLAAAIRRWIHKKPGPDNC 1543
>gi|358368828|dbj|GAA85444.1| two-component osmosensing histidine kinase [Aspergillus kawachii IFO
4308]
Length = 1347
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1122 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1171
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1172 NHNVSVVSNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1206
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1207 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1264
Query: 207 IVE 209
I++
Sbjct: 1265 ILK 1267
>gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 683
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 46/204 (22%)
Query: 15 EKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTG-----------VDEKKVLE 63
+KL HG ++ + VP EGSS + V + + + + L+
Sbjct: 352 QKLLALHGSKMRVESVP--------GEGSSFAFDVRLKIASGAVALDAPAEDLQDTQTLQ 403
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VL+ ED AV + + L++ G +V++G AVE Q+Q
Sbjct: 404 GLKVLVAEDTAVNVFVLSQFLRRWGVDFDVVENGRRAVE-------------QVQ----- 445
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YDL+LMD QM MDGC+ATR++RRL E G+ +PIIA TA +
Sbjct: 446 -------ARPYDLVLMDLQMPQMDGCEATRLLRRL--PGERGRHLPIIALTASALLGTDA 496
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAI 207
+ ++G + KP L A +
Sbjct: 497 QVADAGFTDVIGKPFMPRELFAKL 520
>gi|452843429|gb|EME45364.1| hypothetical protein DOTSEDRAFT_71181 [Dothistroma septosporum
NZE10]
Length = 996
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ +LLVED + +++ + L+KLG V ++G AVE MT + G
Sbjct: 854 IHILLVEDNLINKKVVVGHLEKLGYHNVDFAENGAVAVEYMTTALKGGG----------- 902
Query: 124 SNLETHNSPHY-DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+N E SP D++LMDCQM +DG ATR +R E PI+A TA +
Sbjct: 903 ANGEAEKSPQRPDIVLMDCQMPVLDGYDATRKLR-----DELKYDGPIVALTASAIEGDR 957
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
++C ++GMD L KP L+ I + +A
Sbjct: 958 KKCIDAGMDDHLIKPLSRKQLSQTIEKWLA 987
>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
psychrophila LSv54]
gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
family) [Desulfotalea psychrophila LSv54]
Length = 910
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 29/159 (18%)
Query: 53 VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
V VD K +LEGL +LLV+D + + +L GA VTL ++G+ +E +
Sbjct: 776 VNSVDRKSLLEGLKILLVDDNEINLYMMEAILLAAGAEVTLAENGQECLERL-------- 827
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
YDLILMD QM +DG + TR IR+ E +++PIIA
Sbjct: 828 -----------------EESSYDLILMDVQMPVLDGYETTRRIRK----DEKYRALPIIA 866
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA +D+ +CF +GM+ + KP + L A+I + +
Sbjct: 867 ITANALSDDIEKCFEAGMNDHVAKPFKIEELDASIAKCL 905
>gi|383760699|ref|YP_005439682.1| putative hybrid sensor histidine kinase and receiver [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367997|dbj|BAL84818.1| putative hybrid sensor histidine kinase and receiver [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 649
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 26/156 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
LEGL VLL ED + I + +L++ G V DG+ ++ L+++AA
Sbjct: 516 LEGLCVLLAEDNEINAEITMTILQEFGIQVEWTADGKICLD---LLMSAA---------- 562
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTAD 180
+YD+ILMD QM +MDG +ATR IR L + G++ IPI+A TA +
Sbjct: 563 ---------EGYYDMILMDVQMPNMDGYEATRKIRAL---PDAGKADIPILAMTANAFEE 610
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+ RE +GM+ + KP + L AI +K H
Sbjct: 611 DRREALQAGMNGHIAKPVETPSLLQAITNLCRKKLH 646
>gi|169616774|ref|XP_001801802.1| hypothetical protein SNOG_11562 [Phaeosphaeria nodorum SN15]
gi|160703260|gb|EAT81270.2| hypothetical protein SNOG_11562 [Phaeosphaeria nodorum SN15]
Length = 1161
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 31/144 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED Q + +RMLK + VT+ KDG+ A++ +
Sbjct: 972 VKVLVAEDNKTNQEVVLRMLKLEDVYDVTVAKDGQEALDKVR------------------ 1013
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++E H +P Y+LI MD QM ++DG ++TR+IR +G S PI+A TA N +
Sbjct: 1014 ESME-HKAP-YNLIFMDVQMPNLDGLQSTRLIR------ASGFSSPIVALTAYAEESNVK 1065
Query: 184 ECFNSGMDTFLNK----PAQEHLL 203
EC SGMD FL+K PA +H+L
Sbjct: 1066 ECLESGMDFFLSKPIRRPALKHVL 1089
>gi|451994502|gb|EMD86972.1| hypothetical protein COCHEDRAFT_32031 [Cochliobolus heterostrophus
C5]
Length = 1145
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED Q + +RMLK + VT+ KDG+ A++ +
Sbjct: 958 VKVLVAEDNKTNQEVVLRMLKLEDVYDVTVAKDGQEALDKVK------------------ 999
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++E +P Y+LI MD QM ++DG ++TR+IR ++G S PI+A TA N +
Sbjct: 1000 ESME-RQAP-YNLIFMDVQMPNLDGLQSTRLIR------QSGFSAPIVALTAYAEESNVK 1051
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC +SGMD FL+KP + L
Sbjct: 1052 ECLDSGMDFFLSKPIRRPAL 1071
>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
Length = 1268
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 43/176 (24%)
Query: 31 PVTNNIIPQA---------EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGI 81
PVT N++ QA + S + P+ ++ L+G+S+LLVED Q +
Sbjct: 893 PVTKNMMLQAVKRVVFGDLDLSLPTSPLPHELP-------LQGISLLLVEDNLTNQLVAS 945
Query: 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141
+L++LGA + + GE A+E + + H+D++LMD
Sbjct: 946 ELLQQLGATIKIASSGEEALEML-----------------------ESTAEHFDMVLMDI 982
Query: 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
QM MDG + TR IR+L Q +PIIA TA +D+ C +GM + KP
Sbjct: 983 QMPGMDGYQTTREIRKLPRH----QLLPIIAITAHAMSDDIAACLAAGMQDHIAKP 1034
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 42/155 (27%)
Query: 63 EGLSVLLVED----QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
E LSVL+V+D + +LQ I + LG + D + A +L++ A ++
Sbjct: 781 EKLSVLIVDDNDSSRIILQGIAV----SLGWQAKIASDAQEA----SLLVKQAHRD---- 828
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YD++ +D +M DG R +R L + +++ ++T
Sbjct: 829 ------------STRYDVVFVDWRMPGKDGLTFARELRELHSS--------VVSLIVMIT 868
Query: 179 A------DNERECFNSGMDTFLNKPAQEHLLAAAI 207
A D + + +D FL KP ++++ A+
Sbjct: 869 AHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAV 903
>gi|392413394|ref|YP_006450001.1| putative ATPase [Desulfomonile tiedjei DSM 6799]
gi|390626530|gb|AFM27737.1| putative ATPase [Desulfomonile tiedjei DSM 6799]
Length = 2046
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 29/136 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G+ VLL ED Q + + +L+K G VTL +G+ AV+A
Sbjct: 1772 LSGMKVLLAEDNVFNQAVAMEVLRKQGCEVTLASNGKEAVQAF----------------- 1814
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+S +D+ILMD QM MDG +ATR+IR ET IPIIA TA ++
Sbjct: 1815 --------DSQPFDVILMDVQMPEMDGFEATRIIR----SRETSGRIPIIAQTAHAFKED 1862
Query: 182 ERECFNSGMDTFLNKP 197
C +GMD + KP
Sbjct: 1863 RDRCKRAGMDEHIPKP 1878
>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 43/176 (24%)
Query: 31 PVTNNIIPQA---------EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGI 81
PVT N++ QA + S + P+ ++ L+G+S+LLVED Q +
Sbjct: 893 PVTKNMMLQAVKRVVFGDLDLSLPTSPLPHELP-------LQGISLLLVEDNLTNQLVAS 945
Query: 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141
+L++LGA + + GE A+E + + H+D++LMD
Sbjct: 946 ELLQQLGATIKIASSGEEALEML-----------------------ESTAEHFDMVLMDI 982
Query: 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
QM MDG + TR IR+L Q +PIIA TA +D+ C +GM + KP
Sbjct: 983 QMPGMDGYQTTREIRKLPRH----QLLPIIAITAHAMSDDIAACLAAGMQDHIAKP 1034
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 42/155 (27%)
Query: 63 EGLSVLLVED----QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
E LSVL+V+D + +LQ I + LG + D + A +L++ A ++
Sbjct: 781 EKLSVLIVDDNDSSRIILQGIAV----SLGWQAKIASDAQEA----SLLVKQAHRD---- 828
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YD++ +D +M DG R +R L + +++ ++T
Sbjct: 829 ------------STRYDVVFVDWRMPGKDGLTFARELRELHSS--------VVSLIVMIT 868
Query: 179 A------DNERECFNSGMDTFLNKPAQEHLLAAAI 207
A D + + +D FL KP ++++ A+
Sbjct: 869 AHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAV 903
>gi|54302830|ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
gi|46916254|emb|CAG23023.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
Length = 578
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 26/139 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED V Q++ +LKK G + + +G+ AV+ L
Sbjct: 454 ILIVEDNIVNQKVASLLLKKAGYQIVVANNGQEAVD-----------------------L 490
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
T P + ILMDC M MDG AT IR E E T + +PIIA TA V ++ +C
Sbjct: 491 ITQKEPTLFKAILMDCMMPIMDGFAATEAIRLWEKEQHTDR-LPIIALTASVLDEDISKC 549
Query: 186 FNSGMDTFLNKP-AQEHLL 203
+ +GMD ++ KP +EHLL
Sbjct: 550 YEAGMDDYVAKPFRKEHLL 568
>gi|317029553|ref|XP_001391885.2| histidine kinase J7 [Aspergillus niger CBS 513.88]
Length = 1308
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1082 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1131
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1132 NHNVSVVSNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1166
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1167 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1224
Query: 207 IVE 209
I++
Sbjct: 1225 ILK 1227
>gi|168061325|ref|XP_001782640.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162665873|gb|EDQ52543.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 36/163 (22%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K+L G +L+V+D V +R+ ML + GA V V G AV A+ +N +
Sbjct: 965 KLLTGKRLLVVDDNMVNRRVATSMLARYGATVVKVNGGMEAVNAV--------RNQKPDE 1016
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE-------AEAETGQS----- 167
YDL+LMD QM MDG +ATR IR+LE A++E +
Sbjct: 1017 -------------AYDLVLMDIQMPEMDGYEATRQIRKLEIENCEQCADSEASEELFKCF 1063
Query: 168 ---IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+PI+A TA V CF++GMD +++KP + L + +
Sbjct: 1064 HHHLPIVAVTADVMNGTHELCFDAGMDDYISKPLDQKQLYSLL 1106
>gi|238054330|sp|Q9P4U6.2|TCSB_EMENI RecName: Full=Two-component system protein B; AltName: Full=Protein
NHK1; AltName: Full=SLN1 homolog; Flags: Precursor
gi|259487146|tpe|CBF85586.1| TPA: Two-component system protein B Precursor (EC 2.7.13.3)(Protein
NHK1)(SLN1 homolog)
[Source:UniProtKB/Swiss-Prot;Acc:Q9P4U6] [Aspergillus
nidulans FGSC A4]
Length = 1065
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 27/143 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
L+ + L+ ED V Q + +RML VT+VKDG+ A + + N+
Sbjct: 930 LKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVK------------ANM 977
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G +DLI MD QM ++DG ++TR+IR++ G S PI+A +A
Sbjct: 978 EEGK--------VFDLIFMDIQMPNLDGIESTRLIRQM------GCSAPIVALSAFSEDS 1023
Query: 181 NERECFNSGMDTFLNKPAQEHLL 203
N ++C NSGMD F++KP + L
Sbjct: 1024 NIKDCMNSGMDMFISKPIRRPAL 1046
>gi|456351804|dbj|BAM86249.1| putative sensor histidine kinase with PAS and Response regulator
receiver domains [Agromonas oligotrophica S58]
Length = 749
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 69/134 (51%), Gaps = 21/134 (15%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GLS+L+ ED + + +L KLG + GEAA+++ H
Sbjct: 616 GLSILVAEDNDINALLMRSLLTKLGHHADIAVHGEAALDSW-----------------HA 658
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ + +P YDLILMD QM +DG ATR IR EA +E G+ PI+A TA ++
Sbjct: 659 AR--SAGAP-YDLILMDVQMPRLDGIAATRRIRAHEA-SEPGRRTPILALTANALVEDRY 714
Query: 184 ECFNSGMDTFLNKP 197
CF +GMD FL KP
Sbjct: 715 ACFEAGMDGFLVKP 728
>gi|373457781|ref|ZP_09549548.1| multi-sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
gi|371719445|gb|EHO41216.1| multi-sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
Length = 1291
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 27/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+++LLVED + QR+ RM++ +G V + G+ A++ M KN +
Sbjct: 1166 VTILLVEDNVINQRVAKRMVENMGYKVEVANHGQEALDMM--------KNKK-------- 1209
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDL+L+D QM +DG + + IR E E + IPIIA TA ++
Sbjct: 1210 ---------YDLVLLDVQMPVLDGLRTAQKIRVKELNTE--EHIPIIAMTAHAQKEDRDR 1258
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C +GMD +L+KP +L I
Sbjct: 1259 CLEAGMDDYLSKPINMKMLEEKI 1281
>gi|343513491|ref|ZP_08750593.1| Signal transduction histidine kinase [Vibrio sp. N418]
gi|342802042|gb|EGU37486.1| Signal transduction histidine kinase [Vibrio sp. N418]
Length = 1070
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED +V Q+I L K G + DG+ AV+ M A
Sbjct: 779 VLVVEDNSVNQKIAGLHLVKAGLEFDVANDGQEAVD----MYRATPD------------- 821
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LILMDC M MDG AT +R+LE + IPIIA TA V D+ + CF
Sbjct: 822 ------RYALILMDCMMPIMDGFAATTELRKLELH--LNRRIPIIALTASVIDDDVQRCF 873
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+ GMD ++ KP + ++L I I
Sbjct: 874 DVGMDDYIAKPFRANVLQEKIFNLI 898
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 25/134 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ ML K G + ++G+ A++ +
Sbjct: 951 ILLVEDNRVNQKVASLMLDKAGFHYAIAENGQIAIDMYS--------------------- 989
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D+ILMDC M DG +ATR IR+ E + ++ PIIA TA V D+ + CF
Sbjct: 990 ---EDSSFDVILMDCMMPVKDGFEATREIRQHEVDFGLVKT-PIIALTASVIDDDIQRCF 1045
Query: 187 NSGMDTFLNKPAQE 200
+SGMD ++ KP ++
Sbjct: 1046 DSGMDAYVAKPVRK 1059
>gi|134076372|emb|CAK39626.1| unnamed protein product [Aspergillus niger]
Length = 1306
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1073 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1122
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1123 NHNVSVVSNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1157
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1158 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1215
Query: 207 IVE 209
I++
Sbjct: 1216 ILK 1218
>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP6]
gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP6]
Length = 1202
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 29/143 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V ++ + ML KLG +V +GE AV+A++ H+
Sbjct: 1078 LKILLAEDNPVNMKVALLMLNKLGYKADVVSNGEEAVQALS---------HK-------- 1120
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++LMD QM MDG +ATR I + + I+A TA + +
Sbjct: 1121 --------HYDVVLMDVQMPKMDGLEATRAI----LDMDLVDRPRILAMTAYALEGDRKR 1168
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C ++GMD +++KP Q L AA+
Sbjct: 1169 CLDAGMDGYISKPVQIDELRAAL 1191
>gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase
[Planctomyces brasiliensis DSM 5305]
gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase
[Planctomyces brasiliensis DSM 5305]
Length = 543
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 30/152 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+G+ VL+ ED + + MLKK GA V++V++G+ AV+A+ AA +N
Sbjct: 406 LDGVHVLMAEDGIHNRTLISLMLKKAGARVSVVENGQLAVDAI-----AADQNR------ 454
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
G+ Y +ILMD QM +DG AT IR G S+P+IA TA V D+
Sbjct: 455 -GNG--------YQIILMDMQMPVLDGYSATAQIR------ANGCSLPVIALTANVLEDD 499
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+C +SG D FL KP L VETIAR
Sbjct: 500 VDKCRDSGCDDFLAKPVNRRDL----VETIAR 527
>gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
Length = 632
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 28/132 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ ML++LG V++ GE A + + H
Sbjct: 505 VLIVEDTEVNQRVVRIMLEQLGLKVSVASHGEEAFQLC--------REHA---------- 546
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG AT IR + E G +PIIA TA V ++++ CF
Sbjct: 547 -------FDLIFMDCQMPVMDGFIATEQIRDMN---EWGAHVPIIALTANVVKEDQQRCF 596
Query: 187 NSGMDTFLNKPA 198
+GM+ F+ KP
Sbjct: 597 EAGMNEFVAKPV 608
>gi|9711336|dbj|BAB07814.1| NHK1 [Emericella nidulans]
Length = 1070
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 27/143 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
L+ + L+ ED V Q + +RML VT+VKDG+ A + + N+
Sbjct: 930 LKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVK------------ANM 977
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G +DLI MD QM ++DG ++TR+IR++ G S PI+A +A
Sbjct: 978 EEGK--------VFDLIFMDIQMPNLDGIESTRLIRQM------GCSAPIVALSAFSEDS 1023
Query: 181 NERECFNSGMDTFLNKPAQEHLL 203
N ++C NSGMD F++KP + L
Sbjct: 1024 NIKDCMNSGMDMFISKPIRRPAL 1046
>gi|406657689|gb|AFS50004.1| DRK1 histidine kinase [Sporothrix schenckii]
gi|407361848|gb|AFU10490.1| DRK1 [Sporothrix schenckii]
Length = 1356
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
K + + N ++P E ++ D K E +LL ED V QR+ +++L+K
Sbjct: 1113 KLIDLANGMVPALENRATPSLA-------DNTKSFE---ILLAEDNTVNQRLAVKILEKY 1162
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
VT+V +GE AVEA+ ++D+ILMD QM M
Sbjct: 1163 HHVVTVVGNGEEAVEAV-------------------------KRRNFDVILMDVQMPIMG 1197
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E Q PIIA TA + +C + MD +L+KP Q++ L I
Sbjct: 1198 GFEATSKIREYERNLGGTQRTPIIALTAHAMMGDREKCIQAQMDEYLSKPLQQNHLIETI 1257
Query: 208 VE 209
++
Sbjct: 1258 LK 1259
>gi|345862573|ref|ZP_08814793.1| sensory box protein [Desulfosporosinus sp. OT]
gi|344324433|gb|EGW35991.1| sensory box protein [Desulfosporosinus sp. OT]
Length = 908
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 27/137 (19%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ L +L+VED +++ + + + G V L +DG+AAV+A
Sbjct: 785 KSLKLLIVEDDEIIRMVIEKFSIRKGWKVVLAEDGKAAVDA------------------- 825
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+ +D+I+MDCQM +DG K T IR+LE + G+ PIIA TA
Sbjct: 826 ------YQKQEFDVIIMDCQMPVLDGYKTTAAIRQLENKV--GKHTPIIAMTANALKGVR 877
Query: 183 RECFNSGMDTFLNKPAQ 199
C N+GMD +L KP +
Sbjct: 878 ETCLNAGMDDYLTKPVE 894
>gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1097
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 18 ELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEG------LSVLLVE 71
EL HG F+ ++ I+P+AE + S V + E ++++ L VL+ E
Sbjct: 787 ELGHGSTFWFR---ISLPIVPEAELADQS--VAAEAVPRLENRLVQAKENETPLRVLVAE 841
Query: 72 DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131
D V Q L+ G +V GE AV A + NA
Sbjct: 842 DNTVNQMFVASWLRNAGWECDVVATGEEAVHAFS---NA--------------------- 877
Query: 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD 191
YDL+LMDC+M MDG AT+ IR E + P+IA TA + C +GMD
Sbjct: 878 -RYDLVLMDCRMPDMDGMTATQEIRSYEEATGSPSRTPVIALTANAMKGDRELCLKAGMD 936
Query: 192 TFLNKPAQEHLLAAAIVETIAR 213
+L KP A++ TIAR
Sbjct: 937 EYLTKP----FTPEALMATIAR 954
>gi|422306135|ref|ZP_16393320.1| sensory box protein [Vibrio cholerae CP1035(8)]
gi|408627199|gb|EKL00016.1| sensory box protein [Vibrio cholerae CP1035(8)]
Length = 1268
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 43/176 (24%)
Query: 31 PVTNNIIPQA---------EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGI 81
PVT N++ QA + S + P+ ++ L+G+S+LLVED Q +
Sbjct: 893 PVTKNMMLQAVKRVVFGDLDLSLPTSPLPHELP-------LQGISLLLVEDNLTNQLVAS 945
Query: 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141
+L++LGA + + GE A+E + + H+D++LMD
Sbjct: 946 ELLQQLGATIKIASSGEEALEML-----------------------ESTAEHFDMVLMDI 982
Query: 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
QM MDG + TR IR+L Q +PIIA TA +D+ C +GM + KP
Sbjct: 983 QMPGMDGYQTTREIRKLPRH----QLLPIIAITAHAMSDDIAACLAAGMQDHIAKP 1034
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 42/159 (26%)
Query: 63 EGLSVLLVED----QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
E LSVL+V+D + +LQ I + LG + D + A +L++ A ++
Sbjct: 781 EKLSVLIVDDNDSSRIILQGIAV----SLGWQAKIASDAQEA----SLLVKQAHRD---- 828
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YD++ +D +M DG R +R L + +++ ++T
Sbjct: 829 ------------STRYDVVFVDWRMPGKDGLTFARELRELHSS--------VVSLIVMIT 868
Query: 179 A------DNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
A D + + +D FL KP ++++ A+ +
Sbjct: 869 AHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVV 907
>gi|336262382|ref|XP_003345975.1| histidine kinase group protein [Sordaria macrospora k-hell]
gi|380089567|emb|CCC12449.1| putative histidine kinase group protein [Sordaria macrospora k-hell]
Length = 1570
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D + + R+LK + VT+ KDG+ A + ++ A N+ H
Sbjct: 1305 LRVLVADDNSTNVEVVSRLLKLEDVYDVTIAKDGQEAYD----LVKA--------NMEH- 1351
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
NL+ +D+I MD QM ++DG ++TR+IR++ G S PI+A TA N R
Sbjct: 1352 -NLQ------FDVIFMDIQMPNLDGLQSTRLIRKM------GYSAPIVALTAFSEESNVR 1398
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL+KP + L
Sbjct: 1399 ECMESGMDEFLSKPIRRPAL 1418
>gi|407696266|ref|YP_006821054.1| response regulator receiver domain-containing protein [Alcanivorax
dieselolei B5]
gi|407253604|gb|AFT70711.1| Response regulator receiver domain protein [Alcanivorax dieselolei
B5]
Length = 742
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 40/206 (19%)
Query: 15 EKLELEHGLQLEFKPV--PVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLE---GLSVLL 69
++L HGL + KPV V + + G + PV D ++ + LE +LL
Sbjct: 554 QRLVERHGLVVLVKPVHRSVLRGALERLLGVPRAMPVRD--LPLENAEALERRRHFRLLL 611
Query: 70 VEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETH 129
VED V Q + ML KLG V + AA+ + ET
Sbjct: 612 VEDNEVNQLVTKGMLAKLGYQVKTFSNAPAALSLL--------------------QRET- 650
Query: 130 NSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNS 188
YDL+LMDC + MDG +ATRV+R E+E + G++ PIIA TA + C +
Sbjct: 651 ----YDLVLMDCMLPGMDGFEATRVMR--ESERQEGRARTPIIAITANTAEGVQARCLAA 704
Query: 189 GMDTFLNKPAQEHLLAAAIVETIARK 214
GMD FL KP HL +ET+ R+
Sbjct: 705 GMDDFLAKPV--HLEE---METVLRR 725
>gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
Length = 745
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL++L+ ED + + +L KLG + GEAA+++ L AAG
Sbjct: 612 GLAILVAEDNDINALLMRSLLTKLGHHADIAVHGEAALDSW-LAARAAG----------- 659
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+P YDLILMD QM +DG ATR IR EA +E G+ PI+A TA ++
Sbjct: 660 -------TP-YDLILMDVQMPRLDGIAATRRIRAHEA-SEPGRRTPILALTANALVEDRY 710
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GMD FL KP L A+ A +
Sbjct: 711 ACFEAGMDGFLVKPIDRDKLDEALANLAAAR 741
>gi|375107808|ref|ZP_09754069.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374668539|gb|EHR73324.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 1099
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+G VL+VED AV IG+ ML++ GA V DG AVE ++ AA
Sbjct: 962 LQGARVLMVEDNAVNMMIGVAMLEQWGAQVRQASDGGQAVEE---VLRAA---------- 1008
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+D++LMD QM M G +ATR++RR +++PI+A TA
Sbjct: 1009 -------RGERPFDIVLMDLQMPGMGGHEATRMLRRYFDR----RALPIVALTAAALVSE 1057
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+GMD F+ KP E L +V +A++
Sbjct: 1058 REASMQAGMDGFVTKPIDEKRLHDTLVRVLAQR 1090
>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 1610
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED V Q++ +ML+KLG V + +G+ AV A
Sbjct: 1483 LLLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEAVAA----------------------- 1519
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H Y LILMDCQM +DG +AT +IR++E + PI+A TA + C
Sbjct: 1520 --HERSRYPLILMDCQMPEVDGFEATALIRKMEGRSA---HTPIVAMTANAMQGDRERCL 1574
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD ++ KP + L A +
Sbjct: 1575 AAGMDDYIAKPVRPKELQAIL 1595
>gi|28899864|ref|NP_799519.1| two-component sensor [Vibrio parahaemolyticus RIMD 2210633]
gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
2210633]
gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
Length = 632
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 28/132 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ ML++LG V++ GE A + + H
Sbjct: 505 VLIVEDTEVNQRVVRIMLEQLGLKVSVASHGEEAFQLC--------REHA---------- 546
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG AT IR + E G +PIIA TA V ++++ CF
Sbjct: 547 -------FDLIFMDCQMPVMDGFIATEQIRDMN---EWGAHVPIIALTANVVKEDQQRCF 596
Query: 187 NSGMDTFLNKPA 198
+GM+ F+ KP
Sbjct: 597 EAGMNEFVAKPV 608
>gi|392557140|ref|ZP_10304277.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1112
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 23/131 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + +LK+ + +DGE A+ + L
Sbjct: 988 VLLVEDNKVNQVVACALLKQAELTFDIAEDGEDAL----------------------TKL 1025
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
N+ Y LILMDCQM MDG +AT IR A E Q+IPIIA TA ++ +C
Sbjct: 1026 NQANANTYQLILMDCQMPIMDGYQATMAIREGLAGLE-NQTIPIIALTANAMRGDKDKCL 1084
Query: 187 NSGMDTFLNKP 197
N+GM+ +L+KP
Sbjct: 1085 NAGMNDYLSKP 1095
>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
platensis NIES-39]
Length = 730
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
T D+ K L +LL ED V Q + + L++LG V DGEA ++
Sbjct: 465 TSEDKLKAFIPLKILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQ----------- 513
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIA 172
+LET HYDLILMDCQM +DG + T IRR + Q P IIA
Sbjct: 514 -----------HLETQ---HYDLILMDCQMPILDGYETTARIRR----RQNSQRPPIIIA 555
Query: 173 FTALVTADNERECFNSGMDTFLNKP 197
TA V + C +GMD ++ KP
Sbjct: 556 LTASVMPSDRDRCIEAGMDDYITKP 580
>gi|452844597|gb|EME46531.1| hypothetical protein DOTSEDRAFT_70515 [Dothistroma septosporum NZE10]
Length = 1166
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED + Q + +RMLK VT+ KDG+ A++ + + G
Sbjct: 972 IRVLVAEDNKINQEVVLRMLKLEDVYDVTVAKDGQEALDVVKESMRGGG----------- 1020
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
P ++LI MD QM ++DG ++T++IR E G PI+A TA N +
Sbjct: 1021 --------PPFNLIFMDVQMPNVDGIQSTKLIR------EIGYQAPIVALTAFAEESNIK 1066
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+C +SGM+ FL KP + L + E A
Sbjct: 1067 DCLDSGMNYFLAKPIRRPQLKKVLKEYCA 1095
>gi|407000228|gb|EKE17601.1| hypothetical protein ACD_10C00372G0002 [uncultured bacterium]
Length = 749
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 75/151 (49%), Gaps = 28/151 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKL-GAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
K E + VL+VED + + MLKK G V V+DG+ AV H +
Sbjct: 616 KSPTETVLVLVVEDNKTNRMVIQAMLKKQSGIRVETVEDGQEAV------------THVM 663
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTAL 176
Q ++PH LILMDCQM MDG +ATR IR EAETGQ+ IPIIA TA
Sbjct: 664 QG----------STPH--LILMDCQMPVMDGYEATRQIRAW--EAETGQARIPIIALTAG 709
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ +GMD FL KP +L A+
Sbjct: 710 AFGKDRENALAAGMDDFLTKPIDAKILKIAL 740
>gi|410664899|ref|YP_006917270.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
gi|409027256|gb|AFU99540.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
Length = 872
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K L+G+ VLL ED V Q++ + +L K+ V + +G+ A++
Sbjct: 738 KTLKGVRVLLAEDNVVNQKVAVGILNKMDVAVDIANNGQEAIDL---------------- 781
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
L +H +Y +LMD +M +DG ATR +R + IPIIA TA
Sbjct: 782 ------LNSHACNYYGAVLMDMEMPEVDGYDATRRMR----AGNHCKDIPIIAMTAHAMR 831
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
++ C +GMD ++ KP + LL + IA+
Sbjct: 832 GDKERCLAAGMDAYITKPVKPELLYQTLASFIAK 865
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 21/166 (12%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D+ + L L+V+D ++I + L VT V A A+
Sbjct: 586 DKSQKFRHLKTLVVDDNKAARQILTNLATHLDLHVTSVASAAEAFSAI------------ 633
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
L + P +DL+LMD QM +DG A+R I+ + ++ I + AF
Sbjct: 634 --------ELADRDQP-FDLVLMDYQMPEIDGLSASRTIKEKLSLSQIPAIILVSAFHRD 684
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDE 222
+++ + +++F++KP + L AI E + D+
Sbjct: 685 EVLGDKQSQTDIPVESFISKPISQSHLFDAIAEVFGDSVFRSDADQ 730
>gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102]
Length = 1372
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 37 IPQAEGSSSSCP-VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
IP+ S + P V+ D+ + K +L+VED V Q I I+ ++KLG VT
Sbjct: 1079 IPRRRLSVRTPPCVDQDMPRTERAKT----HILVVEDNPVNQMIAIKTIQKLGFQVTAAW 1134
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
+G+ A+E LM + G+N + D+ILMD QM +DG K T ++
Sbjct: 1135 NGKEALEY--LMATSRGQNMKP-----------------DMILMDVQMPIIDGYKCTHLL 1175
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET-IARK 214
R Q +PI+A TA + +C +GMD +L KP ++L ++ ++R+
Sbjct: 1176 RHHSPYKTLLQDVPIVAMTASAIHGDREKCNKAGMDDYLAKPVTMNILERMLIRWCLSRR 1235
Query: 215 SHKFSCDEQAE 225
+ +E ++
Sbjct: 1236 KVSAAVEESSD 1246
>gi|421506215|ref|ZP_15953140.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
gi|400342997|gb|EJO91382.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
Length = 835
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 52/197 (26%)
Query: 24 QLEFKPVPVTNNI--------IPQAEGSSSSCPVN---DDVTGVDEKKVLEGLSVLLVED 72
QL+ KP P T + PQ S PVN + VD+ ++LLV+
Sbjct: 548 QLQAKP-PCTRKLHKALVEMLCPQRGPGEPSAPVNGRRPQILCVDDNPA----NLLLVQT 602
Query: 73 QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132
+L LGA VT V G AA+EA+ HGS
Sbjct: 603 ----------LLDDLGAQVTAVDSGFAAIEAV----------------QHGS-------- 628
Query: 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT 192
+DL+ MD QM MDG +AT IR+ E E + + PIIA TA A+ +R SGMD
Sbjct: 629 -FDLVFMDVQMPGMDGRQATEAIRQWEGE-QGRSATPIIALTAHALANEKRTLLQSGMDD 686
Query: 193 FLNKPAQEHLLAAAIVE 209
+L KP E L I++
Sbjct: 687 YLTKPINERQLCQVILK 703
>gi|367475384|ref|ZP_09474846.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. ORS 285]
gi|365272275|emb|CCD87314.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. ORS 285]
Length = 746
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GLS+L+ ED + + +L KLG + GEAA+++ L +AG
Sbjct: 613 GLSILVAEDNDINALLMRSLLTKLGHHADIAVHGEAALDSW-LAARSAG----------- 660
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+P YDLILMD QM +DG A + IR LEA +E G+ PI+A TA ++
Sbjct: 661 -------TP-YDLILMDVQMPRLDGIAAAKRIRALEA-SEPGRRTPILALTANTLVEDRY 711
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GMD FL KP L A+ A +
Sbjct: 712 ACFEAGMDGFLVKPIDRDKLDEALANLAAAR 742
>gi|406598292|ref|YP_006749422.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
gi|406375613|gb|AFS38868.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 702
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 23/142 (16%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
+ K+ L L+VED + Q + LK++G L ++GE AVE + A K
Sbjct: 555 IPSKQELSAFKALIVEDNEINQLVIKEQLKEIGITADLAENGEEAVEK----VKGALKG- 609
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
SP Y +ILMDC M MDG +AT++IR + + + IPIIA TA
Sbjct: 610 --------------KSP-YTIILMDCHMPVMDGLEATKLIRSM---GDKARDIPIIALTA 651
Query: 176 LVTADNERECFNSGMDTFLNKP 197
++ +C SGMD F++KP
Sbjct: 652 NALTGDKEKCLKSGMDDFISKP 673
>gi|374335739|ref|YP_005092426.1| sensory box histidine kinase/response regulator [Oceanimonas sp.
GK1]
gi|372985426|gb|AEY01676.1| sensory box histidine kinase/response regulator [Oceanimonas sp.
GK1]
Length = 889
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
+ S P D ++ L G VLL ED + Q++ I L ++G V+L +G AVE
Sbjct: 644 APSRPPLADTDTEHHRRRLSGCHVLLAEDNRLNQQLVIEYLSRVGVTVSLADNGRQAVEL 703
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
++ +D ILMD QM +DG +ATR IRRL+
Sbjct: 704 VS-------------------------RQAFDAILMDLQMPILDGLEATRQIRRLQQH-- 736
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+PIIA TA + + SGM+ +++KP H L A+V+ R
Sbjct: 737 --HDVPIIALTASAMRSDRDSSYGSGMNAYVSKPVDRHDLYQALVQQCGR 784
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAG-KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM 146
G V +V D A+E M+ M+ AG + N+ L H L L+DC +G
Sbjct: 519 GLKVLVVDDNPLALEVMSGMLRRAGFVVYTAMNIEAARTLLQHRGGELHLALIDCCLGRE 578
Query: 147 DGCKATRVIRR---LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
+G + R+IR+ LEA +PI+ +A + G++ +++KP L
Sbjct: 579 NGLELARIIRQHPHLEA-------LPIVLVSAFGRERPAEQMRALGLEHYVSKPVTWSRL 631
Query: 204 AAAIVETI 211
+ + +
Sbjct: 632 SVCLARVL 639
>gi|428222136|ref|YP_007106306.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Synechococcus sp. PCC 7502]
gi|427995476|gb|AFY74171.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Synechococcus sp. PCC 7502]
Length = 923
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 27/152 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+VED + Q++ I+ML+ G V V +G+ A+E +
Sbjct: 797 SIKVLVVEDNNLNQKLMIKMLQNFGYQVDAVTNGQLALERV------------------- 837
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
N +Y +ILMDCQM +DG +ATR IR LE + E +SI I A + + D E+
Sbjct: 838 ------NQENYTVILMDCQMPVLDGYEATRQIRLLE-DGEPHRSIIIGATSYAMVGDREK 890
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD +++KP + + L++ + + I + S
Sbjct: 891 -CLEAGMDDYISKPIKMNDLSSILQKWIRKTS 921
>gi|117926618|ref|YP_867235.1| periplasmic sensor hybrid histidine kinase [Magnetococcus marinus
MC-1]
gi|117610374|gb|ABK45829.1| periplasmic sensor hybrid histidine kinase [Magnetococcus marinus
MC-1]
Length = 800
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 28/142 (19%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
VDE + L L +L+ ED V Q+I L +LG KDG ++A+ L + G
Sbjct: 665 VDEPQALPSLQILVAEDNLVNQQIAAGYLTRLGHRYQFAKDG---IQALNL-VQKGG--- 717
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
+DLILMD +M MDG +ATR IR L + IPI+A TA
Sbjct: 718 ------------------FDLILMDVRMPDMDGLEATRHIRAL---PKPWCDIPIVALTA 756
Query: 176 LVTADNERECFNSGMDTFLNKP 197
V + + C +GMD FL KP
Sbjct: 757 NVFEQDRQNCREAGMDGFLPKP 778
>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 950
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 28/136 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q++ +RML +LG +V +G+ AV A + AA
Sbjct: 688 ILVAEDNVVNQKLAVRMLDRLGYQPDIVSNGQEAVAAFERGLYAA--------------- 732
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE---AEAETGQSIPIIAFTALVTADNER 183
I+MDCQM +MDG +ATR IR E A + T IPIIA TA +
Sbjct: 733 ----------IVMDCQMPTMDGYEATRRIREQEQKPAASGTRAHIPIIALTANAMPGDRE 782
Query: 184 ECFNSGMDTFLNKPAQ 199
C +GMD +L+KP +
Sbjct: 783 RCKAAGMDDYLSKPVK 798
>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1562
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 40/188 (21%)
Query: 28 KPVPVTN--NIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLK 85
KPV ++ N I +A G + S +D+ + +G S+LL ED A+ Q + +ML+
Sbjct: 1196 KPVTASSIFNAIAEATGKAPSYTRDDEQFTIPS---FQGYSILLAEDNALNQEVAWQMLE 1252
Query: 86 KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145
K GA ++L +G AVE M+ A +DL+LMD QM
Sbjct: 1253 KTGAALSLAANGAEAVE----MVEAGS---------------------FDLVLMDLQMPV 1287
Query: 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA 205
MDG +ATR I E +P+IA +A V ++ + +GM L+KP + +
Sbjct: 1288 MDGFEATRKI------LERFPDLPVIALSAAVMEEDRNKSRQAGMRDHLSKPIE----ST 1337
Query: 206 AIVETIAR 213
++ T+AR
Sbjct: 1338 SLYRTLAR 1345
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+V+D +++ +L+ V DG +AV+A+ + + AG+
Sbjct: 1086 VLVVDDHEAARQVLRNILESCMFQVKEAHDGRSAVDAV-VAADRAGEP------------ 1132
Query: 127 ETHNSPHYDLILMDCQM-GSMDGCKATRVIRRLEAEAE-TGQSIPIIAFTALVTA---DN 181
Y+ + MD +M G +DG +A R I RL AE G P + +A + ++
Sbjct: 1133 -------YEFVFMDWKMPGELDGLQAAREIDRLYAEGFLKGNRPPFVVVSAYQRSELPED 1185
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223
ECFN FL+KP + AI E + DEQ
Sbjct: 1186 SVECFN----CFLSKPVTASSIFNAIAEATGKAPSYTRDDEQ 1223
>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1240
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 31/164 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VL +L+V+D A+ + + L +G V+ +GE A+ MI A
Sbjct: 878 VLRDSRILVVDDSALNREVAREFLVDVGIKVSTASNGEQAIR----MIKQA--------- 924
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+YDL+LMD QM MDG AT++IR E + +PIIA TA + D
Sbjct: 925 ------------NYDLVLMDVQMPVMDGLTATQIIR----EDNQYKQLPIIAMTAHASPD 968
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS--HKFSCDE 222
+ + +SGM+ LNKP LL I I + ++F DE
Sbjct: 969 DYKRSLDSGMNDHLNKPIDHQLLYRTITRWIDASASINQFDADE 1012
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+G+ L+V+D A+ + + +L LG VT V DG AA++ +
Sbjct: 727 LKGMQALVVDDNAMAREVLADILSSLGIEVTTVADGYAALDEL----------------- 769
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ + +SP YD++ +D + +++G + +++E + ++ TA
Sbjct: 770 --ESATSSDSP-YDVVFLDWNIPAINGVETA---KKIENNINIKPPVAMLMVTAYDVDRV 823
Query: 182 ERECFNSGMDTFLNKPA 198
E + + + ++KP
Sbjct: 824 ETDAHQANIKKIISKPV 840
>gi|443472618|ref|ZP_21062644.1| Sensor histidine kinase/response regulator [Pseudomonas
pseudoalcaligenes KF707]
gi|442903060|gb|ELS28473.1| Sensor histidine kinase/response regulator [Pseudomonas
pseudoalcaligenes KF707]
Length = 635
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 72/152 (47%), Gaps = 29/152 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLLVED V Q + ML+ LG V+LV DG AV H
Sbjct: 512 GQQVLLVEDNPVNQTVIEAMLRSLGFQVSLVGDGAQAV-------------------HEA 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
S Y +ILMDC++ +DG +ATR IR+L G+++PIIA TA +
Sbjct: 553 SR------ATYAVILMDCRLPVLDGYEATRQIRQLPG----GEAVPIIALTANALQGDRE 602
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GM+ +L KP + L I ++R S
Sbjct: 603 ACLAAGMNDYLAKPFKRADLLRVIQRWLSRPS 634
>gi|383758114|ref|YP_005437099.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381378783|dbj|BAL95600.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 989
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 29/150 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLL ED A+ + + +L +G V L +G AVE AG
Sbjct: 725 GAHVLLAEDNAINTEVALELLHAVGLWVDLAGNGRIAVEK-------AG----------- 766
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YDL+LMD QM MDG +A R IRRL A+ PI+A TA A++
Sbjct: 767 -------ATPYDLVLMDVQMPEMDGLEACRAIRRLPGWAQR----PIVAMTANAFAEDRA 815
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C ++GM+ F+ KP + L A +++ + R
Sbjct: 816 ACLDAGMNDFVAKPVEPDTLYACLLKWLPR 845
>gi|350635856|gb|EHA24217.1| hypothetical protein ASPNIDRAFT_39736 [Aspergillus niger ATCC 1015]
Length = 1298
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 38/183 (20%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N ++P EG S+ P+ D + +LL ED V Q++ +++L+K
Sbjct: 1079 QPIDLGNGMLPALEGRST--PITTDHS--------RSFDILLAEDNDVNQKLAVKILEKH 1128
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
V++V +G AVEA+ YD+ILMD QM M
Sbjct: 1129 NHNVSVVSNGLEAVEAV-------------------------KQRRYDVILMDVQMPVMG 1163
Query: 148 GCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206
G +AT IR E E E+G S PIIA TA + +C + MD +L+KP +++ +
Sbjct: 1164 GFEATGKIR--EYERESGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQT 1221
Query: 207 IVE 209
I++
Sbjct: 1222 ILK 1224
>gi|375133401|ref|YP_005049809.1| hypothetical protein [Vibrio furnissii NCTC 11218]
gi|315182576|gb|ADT89489.1| hypothetical protein vfu_B01304 [Vibrio furnissii NCTC 11218]
Length = 886
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L+K G +V +G+ AV+ +T
Sbjct: 765 ILIVEDNLMNQKIATFFLEKAGLAYVIVSNGQEAVDIVT--------------------- 803
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +LMDC M MDG ATR IR E+ A+ ++IPIIA TA V ++ CF
Sbjct: 804 ---QGGQFSAVLMDCMMPVMDGFTATRKIREWES-AQGLKNIPIIALTASVLDEDIAHCF 859
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
+GMD +L KP + L E
Sbjct: 860 EAGMDAYLPKPYKSKQLFDIFTE 882
>gi|260770053|ref|ZP_05878986.1| hypothetical protein VFA_003117 [Vibrio furnissii CIP 102972]
gi|260615391|gb|EEX40577.1| hypothetical protein VFA_003117 [Vibrio furnissii CIP 102972]
Length = 868
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I L+K G +V +G+ AV+ +T
Sbjct: 747 ILIVEDNLMNQKIATFFLEKAGLAYVIVSNGQEAVDIVT--------------------- 785
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +LMDC M MDG ATR IR E+ A+ ++IPIIA TA V ++ CF
Sbjct: 786 ---QGGQFSAVLMDCMMPVMDGFTATRKIREWES-AQGLKNIPIIALTASVLDEDIAHCF 841
Query: 187 NSGMDTFLNKPAQ 199
+GMD +L KP +
Sbjct: 842 EAGMDAYLPKPYK 854
>gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis
HTCC2503]
gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis
HTCC2503]
Length = 651
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 29/140 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L++LL ED ++ + +L++ G V LV++G+ AVEA+ L +
Sbjct: 519 LNILLAEDNSINAVLAETILRRDGHQVDLVRNGKEAVEAVDLSV---------------- 562
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDLILMD +M MDG +AT IR++ TG+ +PIIA TA T + +
Sbjct: 563 ---------YDLILMDMRMPVMDGIEATVRIRQM----PTGEVLPIIALTANATTADRQA 609
Query: 185 CFNSGMDTFLNKPAQEHLLA 204
C +GM+ FL+KP + L+
Sbjct: 610 CLEAGMNDFLSKPFEPKSLS 629
>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
domain-containing protein [Geobacter bemidjiensis Bem]
gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter bemidjiensis Bem]
Length = 818
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q +G +L+ LG V + ++G AA ++ L G+
Sbjct: 565 VLLVEDNVVNQEVGRGLLESLGCRVKVAENGLAA----------------LKELQRGA-- 606
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM +DG +ATR IR + E + +PIIA TA + C
Sbjct: 607 -------FDLIFMDCQMPVLDGLEATRRIR--QREEGSSARVPIIALTAYAMKGDREACL 657
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQ 227
+G D +L+KP L+ +I + C E + Q
Sbjct: 658 AAGADDYLSKPFSREQLSKSI-------ERRLGCGEASATQ 691
>gi|443469783|ref|ZP_21059926.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
pseudoalcaligenes KF707]
gi|442899267|gb|ELS25755.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
pseudoalcaligenes KF707]
Length = 927
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 71/149 (47%), Gaps = 26/149 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED V Q + LKK G V V +G AAVE
Sbjct: 800 ILVAEDNPVNQLVVQGFLKKRGYLVRTVANGRAAVE------------------------ 835
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
E P LILMDC+M MDG +ATR IRRLE + +PI+A TA + ++ +
Sbjct: 836 EYQRDPDGIQLILMDCEMPEMDGFEATRQIRRLERNRDW-PPVPIVALTAHILEEHRQAG 894
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARK 214
++GMD FL KP LL + + IAR+
Sbjct: 895 ADAGMDDFLGKPLDSALLFSTLERFIARQ 923
>gi|442770545|gb|AGC71258.1| sensor protein gacS [uncultured bacterium A1Q1_fos_75]
Length = 696
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
+ G PVN ++ ++L+ ED V Q + L+ VT+V++G
Sbjct: 552 SSGPPQPSPVNAATANWKQRL---NWNILVAEDNHVNQIVAEEYLRGFDCSVTIVENGAL 608
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
AV A S +D+ILMDCQM MDG ATR+IR LE
Sbjct: 609 AVAAF-------------------------ESEPFDVILMDCQMPEMDGLAATRLIRALE 643
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
E + +PIIA TA ++ ++C ++GM+ F++KP E LA A+
Sbjct: 644 RE-QNLPPVPIIAVTAHAREEDRQDCMDAGMNGFVSKPYCEADLAMAL 690
>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 1275
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 33/172 (19%)
Query: 42 GSSSSCPVNDDVTGVDEKKVLEG----LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
G + P+ D G D + +L+ +LLVED+ + Q + + +L+++G + + +G
Sbjct: 1129 GQTGGMPLADKPAGSDAESILKADFSSARILLVEDEPINQDVALAILEEIGWKIDVAANG 1188
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
E++ L+ + Y ++LMD QM MDG ATR IRR
Sbjct: 1189 R---ESLALV----------------------EANDYQVVLMDMQMPVMDGLAATRQIRR 1223
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
L +++PIIA TA +++ C +GM+ FL+KP + +L A +++
Sbjct: 1224 LPGH----ETLPIIAMTANAFSEDRDRCVEAGMNDFLSKPVEPEVLYAMLLK 1271
>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
271]
gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
271]
Length = 1040
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 30/150 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V Q++ + MLKK G V V +G+ A+ A+
Sbjct: 914 ILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALM--------------------- 952
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNEREC 185
S YD++LMD QM MDG +ATR IR E G S IPIIA TA + C
Sbjct: 953 ----SLPYDVVLMDIQMPVMDGLEATRRIR----NGECGTSAIPIIAMTAHAKQSDRELC 1004
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+GM+ +++KP + LA + + + + S
Sbjct: 1005 LATGMNDYVSKPVNQQALADTLEKWLPKHS 1034
>gi|452845149|gb|EME47082.1| hypothetical protein DOTSEDRAFT_69150 [Dothistroma septosporum
NZE10]
Length = 850
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q+I R L+ G VT +G+ AVEA + AA + L
Sbjct: 713 VLLVEDNIVNQKIIFRKLETKGFNVTTANNGQEAVEA----VKAAPQ------------L 756
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
T + +D+ILMD +M MDG AT+ IR+LE + + + +PI+ TA + E
Sbjct: 757 NTGDKKAFDIILMDQEMPIMDGNAATKAIRQLENDGQL-ERVPILGVTANARGAQQDEML 815
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
SGMD ++KP + L A + E +
Sbjct: 816 KSGMDDVISKPYKIDDLVAKMNEVTVK 842
>gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 769
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ M
Sbjct: 497 VRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM-------------------- 536
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A +
Sbjct: 537 -----ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRER 590
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD +L+KP L A + + R++
Sbjct: 591 CLAAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 619
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VL+VED V Q++ ML LG V + +G VEA
Sbjct: 475 GLKVLVVEDTRVNQQVIQVMLNLLGLEVDIANNG---VEA-------------------- 511
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
LE D ILMDC M MDG +AT+ IR+LE A +PIIA TA V ++
Sbjct: 512 --LEYCQQNEVDAILMDCHMPVMDGYEATQKIRQLEGWAA---YVPIIAVTANVIKEDRE 566
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
CF GM+ FL+KP + + A+++ +
Sbjct: 567 RCFEIGMNGFLSKPVKPKEIEEALIDYV 594
>gi|262197983|ref|YP_003269192.1| response regulator receiver protein [Haliangium ochraceum DSM
14365]
gi|262081330|gb|ACY17299.1| response regulator receiver protein [Haliangium ochraceum DSM
14365]
Length = 134
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 28/132 (21%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
S+L+V+D + QR+ + +L++LG V GEAA++A+
Sbjct: 15 SILVVDDNEINQRVAVGLLRRLGHAAEAVASGEAALKAVA-------------------- 54
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
Y L+ MDC M MDG + TR +R E E G+ + ++A T T ++ R+C
Sbjct: 55 -----EKRYRLMFMDCMMPGMDGLETTRKLRESEGE---GEHLTVVAMTGKATEEDRRKC 106
Query: 186 FNSGMDTFLNKP 197
+GMD ++ KP
Sbjct: 107 LEAGMDDYITKP 118
>gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 646
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 28/138 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + Q++ ML+K+G V + +DGE A L
Sbjct: 515 VLLVEDTFINQKVAKLMLEKIGLAVDIAEDGEQA-------------------------L 549
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y +I MDCQM +DG + T ++R A + +PIIA TA V ++++ CF
Sbjct: 550 VLCQQQQYGIIFMDCQMPVLDGFETTEILR---ASDGWTRDVPIIALTANVVVEDKQRCF 606
Query: 187 NSGMDTFLNKPAQEHLLA 204
+ GM+ FL KP + ++
Sbjct: 607 DVGMNDFLAKPVTQQRMS 624
>gi|443475947|ref|ZP_21065876.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019143|gb|ELS33280.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1390
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 31/134 (23%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L +LLVED +V QR+ M ++LG + + DG A++ + +NH+
Sbjct: 1264 LRILLVEDNSVNQRVATLMFRRLGYQIEAIANDGLQAIQFL--------QNHE------- 1308
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DL+LMD QM MDG AT++IR + + I+A TA V ++ +
Sbjct: 1309 ----------FDLVLMDIQMPEMDGITATKLIR-----TDLKSQVRIVAMTADVMPEDRQ 1353
Query: 184 ECFNSGMDTFLNKP 197
CF++GMD +++KP
Sbjct: 1354 ACFDAGMDDYVSKP 1367
>gi|373487561|ref|ZP_09578228.1| ATP-binding region ATPase domain protein [Holophaga foetida DSM
6591]
gi|372008636|gb|EHP09261.1| ATP-binding region ATPase domain protein [Holophaga foetida DSM
6591]
Length = 768
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 84 LKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQ 142
L G + LV D +E M+ G HQ+ + G LE +DL+LMDCQ
Sbjct: 641 LSNQGRRILLVDDSAMNLEVFAEMLTITG--HQVTSALDGFQALEILQQESFDLVLMDCQ 698
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M +MDG ++TR IR+L+ +P+IA T + D+ C +GM+ FL KP +
Sbjct: 699 MPNMDGFESTRRIRKLDLPC---SQVPVIALTGNASQDDRARCLGAGMNDFLTKPVRSKD 755
Query: 203 LAAAI 207
L A I
Sbjct: 756 LQAMI 760
>gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
TIE-1]
gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator
receiver domains [Rhodopseudomonas palustris CGA009]
gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
TIE-1]
Length = 873
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+ ED + Q + ++ML++ A +T+V DG AV+A AG+
Sbjct: 628 LRVLIAEDDSTNQMVVMKMLQEFAAEITVVSDGTDAVQA-------AGEGE--------- 671
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++LMD +M +MDG ATR IR + +PIIA TA D+ +
Sbjct: 672 ---------FDVVLMDVRMPNMDGLAATRAIR---GKGGALAKLPIIALTANAFPDDVKV 719
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C ++GM+ FL KP ++ L AA++ +
Sbjct: 720 CRDAGMNDFLAKPLRKPALVAAVLRAL 746
>gi|385791602|ref|YP_005822725.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302325536|gb|ADL24737.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 1405
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 25/145 (17%)
Query: 54 TGVDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
T V +KK+ G VLLV+D + + I +L+ G VT DGE AVE M
Sbjct: 1271 TPVSDKKISFNGKKVLLVDDNELNREIAQEILEDCGILVTTACDGEKAVEYM-------- 1322
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
+N+ G DL+LMD QM MDG +ATRVIR+L + + IPIIA
Sbjct: 1323 -----KNVQPGD---------CDLVLMDVQMPIMDGYEATRVIRKL--DNKVAAEIPIIA 1366
Query: 173 FTALVTADNERECFNSGMDTFLNKP 197
TA AD+++ ++GM+ + KP
Sbjct: 1367 MTANAFADDQQAALDAGMNEHVAKP 1391
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 25/138 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K LEG +L+V+D + ++ K+LG G A+E + A + H
Sbjct: 1138 KELEGKRILVVDDDVDCAKSIPQIFKELGVEAECCYSGADALERVKA---AKAEGHM--- 1191
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
YD L+D +M +MDG K T ++R L G I +I +A +
Sbjct: 1192 --------------YDAFLVDWRMPNMDGMKTTSMLREL-----LGNDILVIVMSAYEWS 1232
Query: 180 DNERECFNSGMDTFLNKP 197
D E + G+ F++KP
Sbjct: 1233 DIEDKATEVGIHNFVSKP 1250
>gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
Length = 1336
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLL ED A+ Q++ +L K G V+L +G AV A
Sbjct: 1089 LRVLLAEDNALNQKLAEAILVKRGHLVSLADNGVKAVAAF-------------------- 1128
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+ +DLI+MD QM MDG ATR IR +E E G++ PI+A TA + +
Sbjct: 1129 -----EATEFDLIIMDVQMPEMDGLAATRAIRAIENERALGRT-PIMAMTAHAMESDRQA 1182
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
C +GMDT++ KP Q AA+
Sbjct: 1183 CLEAGMDTYVAKPIQPDEFLAAV 1205
>gi|149189984|ref|ZP_01868262.1| putative histidine kinase [Vibrio shilonii AK1]
gi|148836150|gb|EDL53109.1| putative histidine kinase [Vibrio shilonii AK1]
Length = 286
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 27/186 (14%)
Query: 21 HGLQLE-FKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEK--KVLEGLSVLLVEDQAVLQ 77
+GLQ+ F P+ N + + + ++ +VT ++ K +L+VED V Q
Sbjct: 113 NGLQVSAFLTSPLFGNRLINSLRNLTATRAPTEVTSTNDTNLKSERTFKILVVEDNKVNQ 172
Query: 78 RIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137
+I LKKL + +G+ AVE + G LI
Sbjct: 173 QIVSLNLKKLSIDFVIANNGQEAVEIYQRDYSTIG-----------------------LI 209
Query: 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
LMDC M +DG +AT+ IR EAE Q+ IIA TA V D+ ++C+ SGMD +L KP
Sbjct: 210 LMDCMMPVLDGFEATKAIREFEAENALKQT-HIIALTASVLDDDIQKCYQSGMDDYLPKP 268
Query: 198 AQEHLL 203
+ +L
Sbjct: 269 FKREVL 274
>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
19707]
gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
19707]
Length = 1499
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S + PV + T ++++L +VED V Q++ + ML++ G V +V +G+ A++A
Sbjct: 647 SETLPVAIEETEFSDRRIL------VVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDA 700
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
+ + Y+L+LMDC M MDG +ATR IR EA
Sbjct: 701 IANKV-------------------------YELVLMDCHMPQMDGYEATRRIRVREA--- 732
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
+ +PIIA TA V + +C ++GM+ +L KP + +L
Sbjct: 733 GNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVL 772
>gi|381158345|ref|ZP_09867578.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380879703|gb|EIC21794.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1274
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 31/152 (20%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ + +LL ED + Q++ + +LK+LG +V +GE A+ A+ + H
Sbjct: 1001 QSVRILLAEDNQINQQVALGLLKRLGIEADVVTNGEEALAAL--------RQHP------ 1046
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y L+LMD QM MDG +ATR IR EA IPIIA TA A +
Sbjct: 1047 -----------YALVLMDVQMPVMDGLEATRCIRTREA-GTVNPDIPIIALTAHAMAGDR 1094
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+ C +GM+ +L KP LAA V+ + ++
Sbjct: 1095 QRCLQAGMNDYLPKP-----LAAEAVDAVIKR 1121
>gi|254507093|ref|ZP_05119231.1| sensor histidine kinase/response regulator fusion protein [Vibrio
parahaemolyticus 16]
gi|219550088|gb|EED27075.1| sensor histidine kinase/response regulator fusion protein [Vibrio
parahaemolyticus 16]
Length = 566
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 31/143 (21%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G D +LE LS+L+V+D + Q I +MLKKL + +G A++A +
Sbjct: 441 GNDAVTLLEQLSILVVDDIRMNQVIINQMLKKLSIQPDIATNGIEAIKA--------ASD 492
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
HQ YDLI MDC+M MDG +ATR +R E ++PIIA T
Sbjct: 493 HQ-----------------YDLIFMDCRMPEMDGFEATRYLR------EQNYTLPIIALT 529
Query: 175 ALVTADNERECFNSGMDTFLNKP 197
A T + +C SGM+ L KP
Sbjct: 530 AGTTLEEREKCIVSGMNDILTKP 552
>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
AFC27]
gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
AFC27]
Length = 1240
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 34/160 (21%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S + PV + T ++++L +VED V Q++ + ML++ G V +V +G+ A++A
Sbjct: 647 SETLPVAIEETEFSDRRIL------VVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDA 700
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
+ + Y+L+LMDC M MDG +ATR IR EA
Sbjct: 701 IANKV-------------------------YELVLMDCHMPQMDGYEATRRIRVREA--- 732
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
+ +PIIA TA V + +C ++GM+ +L KP + +L
Sbjct: 733 GNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVL 772
>gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 769
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V + ++L LG DGEAA+ M
Sbjct: 497 VRILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARM-------------------- 536
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YD++ MDCQM +DG ATR R +E E+ G+ +PI+A TA A +
Sbjct: 537 -----ESTRYDMVFMDCQMPVLDGYAATRRWRAMETES-GGRPVPIVAMTANAMAGDRER 590
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C +GMD +L+KP L A + + R++
Sbjct: 591 CLAAGMDDYLSKPVAREQLDACLQRWLPRQA 621
>gi|430745996|ref|YP_007205125.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430017716|gb|AGA29430.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 889
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 65/133 (48%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L+VLL ED V Q++ M++ LG GV +V +G+AAVEA+
Sbjct: 634 LNVLLAEDHLVNQKVASAMVRSLGHGVEVVDNGQAAVEAL-------------------- 673
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
NS +DLILMD QM MDG A IR + E IPIIA TA +
Sbjct: 674 ---DRNS--FDLILMDLQMTVMDGFAALAAIRARQGE---DSRIPIIALTAHAMKGDRER 725
Query: 185 CFNSGMDTFLNKP 197
C + G D +L+KP
Sbjct: 726 CLDVGFDGYLSKP 738
>gi|261416771|ref|YP_003250454.1| integral membrane sensor hybrid histidine kinase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261373227|gb|ACX75972.1| integral membrane sensor hybrid histidine kinase [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 1398
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 25/145 (17%)
Query: 54 TGVDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
T V +KK+ G VLLV+D + + I +L+ G VT DGE AVE M
Sbjct: 1264 TPVSDKKISFNGKKVLLVDDNELNREIAQEILEDCGILVTTACDGEKAVEYM-------- 1315
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
+N+ G DL+LMD QM MDG +ATRVIR+L + + IPIIA
Sbjct: 1316 -----KNVQPGD---------CDLVLMDVQMPIMDGYEATRVIRKL--DNKVAAEIPIIA 1359
Query: 173 FTALVTADNERECFNSGMDTFLNKP 197
TA AD+++ ++GM+ + KP
Sbjct: 1360 MTANAFADDQQAALDAGMNEHVAKP 1384
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 25/138 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K LEG +L+V+D + ++ K+LG G A+E + A + H
Sbjct: 1131 KELEGKRILVVDDDVDCAKSIPQIFKELGVEAECCYSGADALERVKA---AKAEGHM--- 1184
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
YD L+D +M +MDG K T ++R L G I +I +A +
Sbjct: 1185 --------------YDAFLVDWRMPNMDGMKTTSMLREL-----LGNDILVIVMSAYEWS 1225
Query: 180 DNERECFNSGMDTFLNKP 197
D E + G+ F++KP
Sbjct: 1226 DIEDKATEVGIHNFVSKP 1243
>gi|171691683|ref|XP_001910766.1| hypothetical protein [Podospora anserina S mat+]
gi|170945790|emb|CAP72590.1| unnamed protein product [Podospora anserina S mat+]
Length = 1181
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D + + RMLK + VT+ KDG+ A + ++ A +N+Q
Sbjct: 1001 LRVLVADDNSTNIEVVSRMLKLEDIYDVTIAKDGQEAYD----LVKANMENNQ------- 1049
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+D+I MD QM ++DG ++TR+IR++ G S PI+A TA N +
Sbjct: 1050 ---------RFDVIFMDIQMPNLDGLQSTRLIRKM------GYSAPIVALTAFSEESNVK 1094
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL+KP + L
Sbjct: 1095 ECMESGMDEFLSKPIRRPAL 1114
>gi|119471137|ref|ZP_01613669.1| putative signal transduction histidine kinase two-component system
with Protein-glutamate methylesterase domain
[Alteromonadales bacterium TW-7]
gi|119445793|gb|EAW27075.1| putative signal transduction histidine kinase two-component system
with Protein-glutamate methylesterase domain
[Alteromonadales bacterium TW-7]
Length = 920
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + +++ +ML+ +T+ DG A L
Sbjct: 799 ILLVEDNPINRQVIAKMLEPTAVTITMANDGLEA-------------------------L 833
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+T S +DLILMDCQM +MDG + T IR E E + +PIIA TA ++++ C
Sbjct: 834 KTLKSNVFDLILMDCQMPNMDGYECT--IRIRENEIGEDKRVPIIAITANAYEEDKQRCL 891
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ GMD F++KP L + I + + S
Sbjct: 892 DVGMDDFISKPVNSQGLYSVIANNLTKIS 920
>gi|39656323|gb|AAR29884.1| putative histidine kinase HHK5p [Cochliobolus heterostrophus]
Length = 1170
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED Q + +RMLK + VT+ KDG+ A++ +
Sbjct: 983 VKVLVAEDNKTNQEVVLRMLKLEDVYDVTVAKDGQEALDKVK------------------ 1024
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++E +P Y+LI MD QM ++DG ++TR+IR ++G S PI+A TA N +
Sbjct: 1025 ESME-RQAP-YNLIFMDVQMPNLDGLQSTRLIR------QSGFSAPIVALTAYAEESNVK 1076
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC +SGMD FL+KP + L
Sbjct: 1077 ECLDSGMDFFLSKPIRRPAL 1096
>gi|344345082|ref|ZP_08775939.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
gi|343803339|gb|EGV21248.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
Length = 949
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + +LK +G V + +G AV +
Sbjct: 678 GARILLVEDNLVNQEVAAEILKDVGLEVDVANNGREAVTMARRV---------------- 721
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
HYDL+LMD QM MDG +ATR +RRL E PIIA TA D+ R
Sbjct: 722 ---------HYDLVLMDLQMPEMDGLEATRRLRRLPGWEER----PIIAMTANAYDDDRR 768
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C +GM+ ++KP L A +++ ++R
Sbjct: 769 RCEAAGMNGHVSKPVDPQTLYATLLDWLSR 798
>gi|392374836|ref|YP_003206669.1| hypothetical protein DAMO_1780 [Candidatus Methylomirabilis
oxyfera]
gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [Candidatus Methylomirabilis oxyfera]
Length = 683
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 79/181 (43%), Gaps = 32/181 (17%)
Query: 38 PQAEGSSSSCP---VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94
P A S+S + D V V V L +LL ED V + + +R+L+K G V +
Sbjct: 350 PSANASNSGVAAGVIRDQV--VQTPAVCRRLRILLAEDNPVNRILAVRLLEKAGHTVAV- 406
Query: 95 KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRV 154
AG ++ L T +DL++MD QM MDG AT
Sbjct: 407 ----------------AGTGREV--------LVTLEREQFDLVMMDVQMPEMDGISATAA 442
Query: 155 IRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
IR E E +G +PI+A TA + C +GMD +L+KP Q L AI AR
Sbjct: 443 IR--ERERGSGAHLPILALTAHAMNGDRERCLAAGMDDYLSKPIQAKALYEAIARLCARA 500
Query: 215 S 215
S
Sbjct: 501 S 501
>gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus
sp. PCC 7002]
gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS
and HAMP domains [Synechococcus sp. PCC 7002]
Length = 1280
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 27/145 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ + +L +LG GV + +G +E + S
Sbjct: 1143 LRILLAEDNIVNQKVALNILARLGYGVEVATNG---LEVL-------------------S 1180
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEA--ETGQSIPIIAFTALVTADNE 182
L++ N YD+ILMD QM +MDG +ATR IR+ +A + G+ IIA TA +
Sbjct: 1181 RLQSDN---YDVILMDVQMPAMDGLEATRQIRQRDARSPQSQGKRPWIIAMTANAMQGDR 1237
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
+ C ++GMD +L+KP Q L A+
Sbjct: 1238 QVCLDAGMDDYLSKPIQVKKLLHAL 1262
>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1524
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 26/150 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED Q++ + +LKK+G V +G AV A+
Sbjct: 1258 VRILLAEDNTTNQQVALGILKKMGLHADAVANGAEAVTALA------------------- 1298
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
S YDL+LMD QM MDG +ATR IR + A +PIIA TA ++ +
Sbjct: 1299 ------SIPYDLVLMDVQMPVMDGLEATRAIRA-SSSAVRNPGLPIIAMTAGAMRGDQEQ 1351
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
C ++GM+ +++KP +LA + + R+
Sbjct: 1352 CLDAGMNDYVSKPVSPAILAEVLARWLPRE 1381
>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
Length = 789
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 24/173 (13%)
Query: 25 LEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRML 84
L FKP+ +G+ + P +++ ++ K +G VLLVED V Q + +L
Sbjct: 624 LIFKPLTAIGLYDTLVKGTLAEQPKEVELSAMNTPKKAKG-HVLLVEDNKVNQVVAGALL 682
Query: 85 KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
K+ + +DGE A+ + N T N+ Y LILMDCQM
Sbjct: 683 KQAELTFDIAEDGEDALTKL--------------------NQATANT--YQLILMDCQMP 720
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
MDG +AT IR A E ++IPIIA TA ++ +C N+GM+ +L+KP
Sbjct: 721 IMDGYQATMAIREGLAGQE-NRAIPIIALTANAMHGDKEKCLNAGMNDYLSKP 772
>gi|254444190|ref|ZP_05057666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198258498|gb|EDY82806.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 664
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED AV +R+ ++++ KLG DG A+E I+N
Sbjct: 537 ILLVEDHAVNRRLAVKLMSKLGYECDQAVDGLEAMECC------------IEN------- 577
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLIL+DC M MDG + R R+LE + + IIA TA + C
Sbjct: 578 ------DYDLILLDCCMPRMDGYEFVREFRKLEGVRKLERPTRIIALTANALQGDRERCL 631
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIA 212
+GMD +L KP ++ +L AI + +A
Sbjct: 632 EAGMDDYLTKPLKKAILGDAIRDALA 657
>gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
Length = 1208
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 72/151 (47%), Gaps = 32/151 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
LS+LLVED V Q + ++L+K G VTL ++G+ AVE
Sbjct: 959 LSILLVEDHPVNQLLARQLLEKWGHTVTLAENGQIAVERFP------------------- 999
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++LMD M M G ATR+IR LE GQ PIIA TA ++ +
Sbjct: 1000 ------EARWDIVLMDMHMPVMGGEDATRLIRALEP---PGQHTPIIAMTASAMPEDRQH 1050
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
C ++GMD L KP A A+ +AR S
Sbjct: 1051 CLDAGMDDHLAKPIN----AQAVHRLLARYS 1077
>gi|359449418|ref|ZP_09238911.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas sp. BSi20480]
gi|358044728|dbj|GAA75160.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas sp. BSi20480]
Length = 843
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 27/147 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + +++ +ML+ +T+ DG A++A+ KN+
Sbjct: 722 ILLVEDNPINRQVIAKMLEPTAVTITMANDGLEALKAL--------KNNV---------- 763
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMDCQM +MDG + T IR E E + +PIIA TA ++++ C
Sbjct: 764 -------FDLILMDCQMPNMDGYECT--IRIRENEIREDKRVPIIAITANAYEEDKQRCL 814
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ GMD F++KP L + I + +
Sbjct: 815 DVGMDDFISKPVNSQGLYSVIANNLTK 841
>gi|334131211|ref|ZP_08504977.1| Two-component hybrid sensor and regulator [Methyloversatilis
universalis FAM5]
gi|333443841|gb|EGK71802.1| Two-component hybrid sensor and regulator [Methyloversatilis
universalis FAM5]
Length = 758
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 85/192 (44%), Gaps = 39/192 (20%)
Query: 23 LQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIR 82
Q+E P+P N QA + +++V +D VL+ ED V Q + R
Sbjct: 605 FQVEL-PLPAARNRDAQAPAQAE----DNEVLALDA-------DVLIAEDTPVNQVLLKR 652
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L + G +T DG AVEA H+DL+LMD Q
Sbjct: 653 LLSRHGVRITQATDGAQAVEAC-------------------------RGRHFDLVLMDVQ 687
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +ATR IR L+ Q PIIA TA ++ + C +GMD F++KP
Sbjct: 688 MPVMDGLEATRHIRALDDV--YWQRAPIIAITANALEEDRQRCREAGMDDFISKPFHARQ 745
Query: 203 LAAAIVETIARK 214
L +V +AR+
Sbjct: 746 LIETLVRHLARR 757
>gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010]
gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010]
Length = 994
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VL+VED I +LKK + +DGE A +N KN+
Sbjct: 864 NVLVVEDNTTNIVIIQGLLKKFNVTTDVAEDGEQA-------LNLLAKNN---------- 906
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
YDL+LMDCQM MDG + TR IR+ +++ + IPIIA TA +E C
Sbjct: 907 --------YDLVLMDCQMPVMDGFETTRTIRKADSDI-LNREIPIIALTAQAMRGDEAAC 957
Query: 186 FNSGMDTFLNKPAQEHLL 203
+GMD +L+KP + LL
Sbjct: 958 REAGMDDYLSKPIEPRLL 975
>gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus
JA2]
gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus
JA2]
Length = 1201
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 29/147 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED + Q++ + +L +LG V +V +G AVE +
Sbjct: 946 VLLAEDNELNQQVAVELLSELGLVVDVVDNGRTAVERV---------------------- 983
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDL+LMD QM MDG ATR IR L A +PI+A TA D+ + C
Sbjct: 984 ---RERRYDLVLMDMQMPEMDGLSATRAIRALPGAAR----LPIVAMTANAMVDDVQRCL 1036
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
++GMD + KP LA+ + + R
Sbjct: 1037 SAGMDGHIAKPIDPRRLASQLQGCLER 1063
>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1523
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 27/133 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED V Q++ +R L+ LG +V +G+ ++ + ++Q
Sbjct: 1250 LRILLAEDNPVNQKVALRQLQSLGYMADVVANGQEVLDLL----------QRVQ------ 1293
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDLILMDCQM MDG +ATR +R + E +G +IA TA ++
Sbjct: 1294 ---------YDLILMDCQMPVMDGYEATRRLR--QQERGSGHRTVVIAITANAMQEDRER 1342
Query: 185 CFNSGMDTFLNKP 197
C +GMD +L+KP
Sbjct: 1343 CLQAGMDDYLSKP 1355
>gi|226287246|gb|EEH42759.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb18]
Length = 1285
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 36/183 (19%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
PV + N +IP EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1065 PVDLGNGMIPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKCN 1114
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
VT+V +G A+EA+ +D+ILMD QM M G
Sbjct: 1115 HDVTVVSNGLQALEAI-------------------------KQRRFDVILMDVQMPVMGG 1149
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+AT IR E E ++ PIIA TA + +C + MD +L KP + + + I+
Sbjct: 1150 FEATGKIREYEREHGLPRT-PIIALTAHAMLGDREKCIQAQMDEYLAKPLKHNQMVQMIL 1208
Query: 209 ETI 211
+ +
Sbjct: 1209 KCV 1211
>gi|440797672|gb|ELR18753.1| multisensor hybrid histidine kinase [Acanthamoeba castellanii str.
Neff]
Length = 956
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 22/147 (14%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VLLVED V Q++ +++L +LG + V + DG AV+ + +A G+
Sbjct: 823 MRVLLVEDNLVNQKVALKLLARLGYSNVRVANDGRQAVDIIAASASATGQAG-------- 874
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIAFTALVTADNE 182
YD+++MD M MDG A+R+I+R A G + P IIA TA + D
Sbjct: 875 ----------YDVVIMDLHMPEMDGITASRIIKRTARSA--GSAPPYIIACTADLQYDTR 922
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVE 209
+ C +G+D +L KP + L+ A++E
Sbjct: 923 QACIQAGLDGYLEKPIKLKDLSRAMME 949
>gi|323495069|ref|ZP_08100158.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546]
gi|323310726|gb|EGA63901.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546]
Length = 1039
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 25/139 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+VED V Q + +L+KLG T+ ++G+ A+E ++
Sbjct: 915 LKLLVVEDNRVNQIVITGILQKLGLQSTIAENGKEAIEVLS------------------- 955
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YD++LMDCQM MDG +AT IR A + ++IPIIA TA +
Sbjct: 956 -----GDANYDIVLMDCQMPVMDGYEATHRIRS-GASGDQVKNIPIIALTANAMESDRNA 1009
Query: 185 CFNSGMDTFLNKPAQEHLL 203
C +GM+ FL KP LL
Sbjct: 1010 CKKAGMNDFLTKPVNRDLL 1028
>gi|333895245|ref|YP_004469120.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2]
gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2]
Length = 695
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K+VL VL+VED + Q + LK++G V L +G + +T I
Sbjct: 558 KRVLSESRVLVVEDNEINQIVIKEQLKEIGVSVELANNGALGLAKVTSAI---------- 607
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
P YDLI MDC M MDG AT+ IR L G+++PIIA TA
Sbjct: 608 ---------ARKKP-YDLIFMDCHMPVMDGLAATKEIRAL------GETVPIIALTANAL 651
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218
+ + +C +GMD F++KP L I ++ K K
Sbjct: 652 SGEKEKCLRAGMDDFISKPVGVSRLGDCINYHLSYKQEKL 691
>gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278]
gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. ORS 278]
Length = 754
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GLS+L+ ED + + +L KLG + GEAA+++ L +AG
Sbjct: 621 GLSILVAEDNDINALLMRSLLTKLGHHADIAVHGEAALDSW-LAARSAG----------- 668
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+P YDLILMD QM +DG A + IR LEA E G+ PI+A TA ++
Sbjct: 669 -------TP-YDLILMDVQMPRLDGIAAAKRIRALEA-TEAGRRTPILALTANTLVEDRY 719
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GMD FL KP L A+ A +
Sbjct: 720 ACFEAGMDGFLVKPIDRDKLDEALANLAAAR 750
>gi|93007292|ref|YP_581729.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
cryohalolentis K5]
gi|92394970|gb|ABE76245.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
cryohalolentis K5]
Length = 974
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 31/150 (20%)
Query: 50 NDDVTGVDEKKVLEGLS--VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
ND V + + E +S +L+VED Q+I +ML KLG + +DG+ A++ +
Sbjct: 838 NDSVVVSADNRSNEIISPLILVVEDSPTNQKIACKMLAKLGYRSVVAEDGQQALDIL--- 894
Query: 108 INAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS 167
+ +I DLILMDC+M MDG +AT+ IR G
Sbjct: 895 ---QAQRQEI-----------------DLILMDCRMPVMDGLQATQAIR------AQGDD 928
Query: 168 IPIIAFTALVTADNERECFNSGMDTFLNKP 197
IPI+A TA T ++ C GMD FL KP
Sbjct: 929 IPIVALTANNTEEDRSACLKVGMDEFLAKP 958
>gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase
[Desulfobacterium autotrophicum HRM2]
gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase
[Desulfobacterium autotrophicum HRM2]
Length = 701
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
++LLV+D V QR+ ML K G VT +G +E
Sbjct: 580 AILLVDDNPVNQRMATIMLSKAGYKVTSADNGRQTLE----------------------- 616
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
L + +DLILMD M MDG + TR IR L E ++G +PI+AFTA V + C
Sbjct: 617 LCRSSKERFDLILMDIFMPEMDGFETTRQIRAL--EGDSGVRVPIVAFTANVLPLFKERC 674
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
+GMD FL KP + + AA+
Sbjct: 675 LVAGMDDFLTKPFRREDIFAAV 696
>gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter daltonii FRC-32]
gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter daltonii FRC-32]
Length = 645
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+E HYDLI+MD QM MDG ATR+IR + E G IPIIA TA ++E C
Sbjct: 560 VEMWEKGHYDLIIMDVQMPRMDGITATRIIR--QKEEAVGGHIPIIAMTAHAYREDEERC 617
Query: 186 FNSGMDTFLNKP 197
+ +GMD +L KP
Sbjct: 618 YAAGMDGYLTKP 629
>gi|330919114|ref|XP_003298480.1| hypothetical protein PTT_09218 [Pyrenophora teres f. teres 0-1]
gi|311328301|gb|EFQ93434.1| hypothetical protein PTT_09218 [Pyrenophora teres f. teres 0-1]
Length = 1176
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 29/141 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVE-AMTLMINAAGKNHQIQNLHH 122
+ VL+ ED Q + +RMLK + VT+ KDG+ A++ M M A
Sbjct: 983 VKVLVAEDNKTNQEVVLRMLKLEDVYDVTVAKDGQEALDRVMESMERQA----------- 1031
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y+LI MD QM ++DG ++TR+IR ++G S PI+A TA N
Sbjct: 1032 ----------PYNLIFMDVQMPNLDGLQSTRLIR------QSGFSAPIVALTAYAEESNV 1075
Query: 183 RECFNSGMDTFLNKPAQEHLL 203
+EC +SGMD FL+KP + L
Sbjct: 1076 KECLDSGMDFFLSKPIRRPAL 1096
>gi|295663949|ref|XP_002792527.1| DRK1 histidine kinase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279197|gb|EEH34763.1| DRK1 histidine kinase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1285
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 36/183 (19%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
PV + N +IP EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1065 PVDLGNGMIPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKCN 1114
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
VT+V +G A+EA+ +D+ILMD QM M G
Sbjct: 1115 HDVTVVSNGLQALEAI-------------------------KQRRFDVILMDVQMPVMGG 1149
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+AT IR E E ++ PIIA TA + +C + MD +L KP + + + I+
Sbjct: 1150 FEATGKIREYEREHGLPRT-PIIALTAHAMLGDREKCIQAQMDEYLAKPLKHNQMVQMIL 1208
Query: 209 ETI 211
+ +
Sbjct: 1209 KCV 1211
>gi|225678001|gb|EEH16285.1| signal transduction histidine-protein kinase barA [Paracoccidioides
brasiliensis Pb03]
Length = 1406
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 36/183 (19%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
PV + N +IP EG S+ P+ D T +LL ED V QR+ +++L+K
Sbjct: 1183 PVDLGNGMIPALEGRST--PITTDHT--------RSFDILLAEDNDVNQRVAVKILEKCN 1232
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
VT+V +G A+EA+ +D+ILMD QM M G
Sbjct: 1233 HDVTVVSNGLQALEAI-------------------------KQRRFDVILMDVQMPVMGG 1267
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+AT IR E E ++ PIIA TA + +C + MD +L KP + + + I+
Sbjct: 1268 FEATGKIREYEREHGLPRT-PIIALTAHAMLGDREKCIQAQMDEYLAKPLKHNQMVQMIL 1326
Query: 209 ETI 211
+ +
Sbjct: 1327 KCV 1329
>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal [Magnetospirillum gryphiswaldense
MSR-1]
Length = 935
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 36/164 (21%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
DE L +L+ ED A+ Q++ + +L KLG + DG AVE ++ A
Sbjct: 682 DEAPPAMPLRILVAEDNAINQQVAVGLLNKLGHRADVADDGAEAVE----LVRAG----- 732
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
YDL+LMD QM +DG ATR+IR+L AE I IIA TA
Sbjct: 733 ----------------DYDLVLMDMQMPRVDGLAATRLIRQL---AEPKNRIAIIAMTAN 773
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
+ + C +GMD FL KP L+A + H++S
Sbjct: 774 AMEADRQACLAAGMDDFLAKPIDRRRLSAIL--------HRWSA 809
>gi|94264452|ref|ZP_01288241.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|94264864|ref|ZP_01288639.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454685|gb|EAT04950.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455142|gb|EAT05364.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 136
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 27/153 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL +D + + ML+K G V + DG AAVEA +
Sbjct: 8 ILLADDSRLNLMVATAMLRKGGYLVEVAADGRAAVEAAS--------------------- 46
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+P YDLILMD QM MDG +AT IR + +PIIA TA V ++E++C
Sbjct: 47 ---RTP-YDLILMDIQMPGMDGIEATTAIR-ARTSCQVNNDVPIIALTAHVRPEDEKKCR 101
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
+GM+ FL KP L A + + ++ S K+S
Sbjct: 102 EAGMNDFLAKPFDLDGLTAMVTKWLSHSS-KYS 133
>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
Length = 1259
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 33/163 (20%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V E+ LEG ++L+V+D + + + +L+ G V+L ++G AVE
Sbjct: 979 VRERAPLEG-AILVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVE------------- 1024
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ----SIPII 171
+IQ S +DL+LMDC+M MDG ATR+IR L AE G ++PI+
Sbjct: 1025 KIQ------------SGQFDLVLMDCEMPEMDGFAATRMIRNL---AENGHPELANLPIV 1069
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
A TA ++ C +GM+ ++ KP L IV+ ++RK
Sbjct: 1070 ALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVDCLSRK 1112
>gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS
[Azotobacter vinelandii DJ]
gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS
[Azotobacter vinelandii DJ]
Length = 905
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
+ PQ GS + P+ + +L V+D + +L +GA VT+
Sbjct: 635 LTPQPTGSQTLGPLGNRAP-----------RLLCVDDNPANLLLVQTLLGDMGAAVTVAD 683
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
G AAVEA +DLI MD QM MDG +ATR I
Sbjct: 684 SGHAAVEAA-------------------------QRERFDLIFMDVQMPGMDGRQATRAI 718
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
R+ EA + PIIA TA A+ R SGMD ++ KP E LA +
Sbjct: 719 RQWEAGQPEQRHTPIIALTAHALANERRALLQSGMDDYMTKPINERQLAQVV 770
>gi|445495785|ref|ZP_21462829.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444791946|gb|ELX13493.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 952
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED V + ML+ LG V+ +GE A+ H +Q
Sbjct: 686 VLLAEDNPVNVEVASAMLEGLGLEVSRACNGEEAL-------------HSVQ-------- 724
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +DLILMDCQM MDG AT IRR E + +++PIIA TA + C
Sbjct: 725 ----AGEFDLILMDCQMPVMDGFAATTEIRRHELQRGRARNLPIIAITANALQGDRESCL 780
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIA 212
+GMD +L+KP + L I I+
Sbjct: 781 AAGMDDYLSKPFTQQALGQTIARWIS 806
>gi|343510610|ref|ZP_08747833.1| hypothetical protein VIS19158_18001 [Vibrio scophthalmi LMG 19158]
gi|342801579|gb|EGU37039.1| hypothetical protein VIS19158_18001 [Vibrio scophthalmi LMG 19158]
Length = 897
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 25/134 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
++L+VED + Q+I L K G +V +G AV+ +I + G
Sbjct: 770 NILIVEDNLMNQKIASLFLNKAGLDYQVVSNGADAVD----VIQSGGA------------ 813
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+D ILMDC M MDG ATR IR+ E + Q+IPIIA TA V ++ C
Sbjct: 814 --------FDAILMDCMMPVMDGLTATREIRQWE-QRNGHQAIPIIALTASVLPEDIDSC 864
Query: 186 FNSGMDTFLNKPAQ 199
F +GMD +L KP +
Sbjct: 865 FEAGMDAYLAKPYK 878
>gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 110]
gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 110]
Length = 743
Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 21/151 (13%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GLSVL+ ED + + +L KLG V + GEAA+E+ L ++AG
Sbjct: 610 GLSVLVAEDNEINALLMRSLLTKLGHRVVIAVHGEAALESW-LAASSAG----------- 657
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+P YDL+LMD QM +DG +AT+ IR EA A G PI+A TA ++
Sbjct: 658 -------TP-YDLVLMDIQMPQLDGIEATKRIRAHEA-ATGGHHTPILALTANTLVEDRY 708
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GM+ FL KP L A+ A +
Sbjct: 709 ACFEAGMNGFLIKPLDRDKLDEALAGLAASR 739
>gi|410624816|ref|ZP_11335606.1| signal transduction histidine kinase [Glaciecola mesophila KMM 241]
gi|410155662|dbj|GAC22375.1| signal transduction histidine kinase [Glaciecola mesophila KMM 241]
Length = 572
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 23/131 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + Q + + +L L V + DG A+ S L
Sbjct: 445 VLLVEDNFINQEVMLAILHGLAVQVYIANDGLEAI----------------------STL 482
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +DLILMDCQM ++DG + T+ IR EA E +SIPI A TA V +CF
Sbjct: 483 KRCQKTRFDLILMDCQMPNLDGYETTKRIRAGEA-GELFKSIPIAALTANVLDSERLKCF 541
Query: 187 NSGMDTFLNKP 197
SGM+ +L KP
Sbjct: 542 ESGMNEYLTKP 552
>gi|338533502|ref|YP_004666836.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
gi|337259598|gb|AEI65758.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
Length = 929
Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 28/151 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LLVED A Q++ + +L++LG + +G A++A+
Sbjct: 654 LDILLVEDNATNQKLALLVLERLGYRADVALNGRQALQAL-------------------- 693
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
N YD++LMD QM MDG +ATR IR E +IA TA + +
Sbjct: 694 -----NQKRYDVVLMDLQMPEMDGLEATRRIRE---ELPPKVQPWVIAMTANAMDSDREQ 745
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
CF +GMD FL KP + L AA++ R+S
Sbjct: 746 CFAAGMDDFLGKPIRVEALTAALLRCQGRRS 776
>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 878
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+ ED + QR+ ++ L+KLG + +G + S
Sbjct: 729 IKVLVAEDNVINQRVAVKFLEKLGIKADVASNGNEVL----------------------S 766
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII--AFTALVTADNE 182
NLE H YDLI MD QM +DG + + IR++E PI TA + ++
Sbjct: 767 NLENH---QYDLIFMDFQMPILDGLRCSYTIRQMETAKIWPMRFPIFICGLTANTMSTDK 823
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
+ CF++GM+ F++KP Q L AI
Sbjct: 824 KRCFDNGMNWFISKPFQIGELRTAI 848
>gi|404497281|ref|YP_006721387.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|418065827|ref|ZP_12703197.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
gi|78194884|gb|ABB32651.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|373561625|gb|EHP87856.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
Length = 827
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 26/137 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VL LSVL+VED + + + I +L L V V +G AV+A L
Sbjct: 571 VLPSLSVLVVEDNELNRTVAIGLLTALKQRVAAVANGREAVDA----------------L 614
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G+ YDL+LMD M MDG +ATR IRR +A E ++IPI+A TA D
Sbjct: 615 RDGT---------YDLVLMDISMPEMDGIEATRAIRRGDA-GEKARAIPIVALTAHALKD 664
Query: 181 NERECFNSGMDTFLNKP 197
+ +GM +L+KP
Sbjct: 665 DRDRFLAAGMSDYLSKP 681
>gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1115
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D + L G LLVED V Q + ++KKLG + + G A+E + HQ
Sbjct: 863 DMTQALYGKRALLVEDNKVNQLLATHVIKKLGMLLDIANHGVEAIECV---------EHQ 913
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
YD++LMD QM MDG +ATR+IR+ A S+PI+A +A
Sbjct: 914 ----------------QYDVVLMDIQMPVMDGLEATRLIRQDSRFA----SLPIVAMSAG 953
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
VT D + +C GM F+ KP LL +++
Sbjct: 954 VTLDEQEKCSEVGMTDFIGKPIDSELLTQMLIK 986
>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1765
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+G +LLVED + Q + L+++G +++ +G+ A+E + +
Sbjct: 1418 LQGKRILLVEDNDMNQEVATEFLEQVGVVLSIADNGQIALEKLAMQ-------------- 1463
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+DL+LMDCQM MDG +ATR +R+L A ++P+IA TA A +
Sbjct: 1464 -----------SFDLVLMDCQMPVMDGYQATRELRKLPGLA----NLPVIAMTANAMAGD 1508
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK-FSCDEQAEAQDE 229
C ++GM+ + KP + LL + +++ + S D QA+ E
Sbjct: 1509 REMCLDAGMNDHIAKPIEVSLLYSRLLQYLGDGSKSVLPSDLQAQQTQE 1557
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 30/155 (19%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +EG+ +L+ +D A + I L+ +G V VK G A+E
Sbjct: 1273 KHEIEGMRILVADDNATARDILRTTLESMGFVVDAVKSGSDAIE---------------- 1316
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
H HY + L+D QM M+G +A VI AE ET + I+ +A
Sbjct: 1317 RCQH---------THYPVALIDWQMPEMNGLEAAEVIF---AEQETPPKVLIV--SAHAN 1362
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
A+ + SG+ ++ KP L I+ ++ +
Sbjct: 1363 AEFLEQIERSGIAGYITKPISASRLLDGIMSSLGK 1397
>gi|88705623|ref|ZP_01103333.1| two-component hybrid sensor and regulator [Congregibacter litoralis
KT71]
gi|88700136|gb|EAQ97245.1| two-component hybrid sensor and regulator [Congregibacter litoralis
KT71]
Length = 660
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 35/158 (22%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+GL +L+ ED Q + +L+ LGA T V DG A+ A T
Sbjct: 408 LQGLRILVAEDDQTNQLVVGEVLRLLGADFTTVSDGAEALAAAT---------------- 451
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+DLILMD QM +DG +ATR IR + + Q +PI+A TA V ++
Sbjct: 452 ---------DGAFDLILMDVQMPHVDGLEATRRIR--QRGSAWSQGVPILALTAHVMDEH 500
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
+C +GM+ FL+KP VE+++R +F+
Sbjct: 501 RDQCLEAGMNAFLSKPIS--------VESLSRALAQFT 530
>gi|410626121|ref|ZP_11336889.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM 241]
gi|410154340|dbj|GAC23658.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM 241]
Length = 1172
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 53 VTGVDEKKVL----EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
+T + E K+L + +LLVED + Q++ I MLKKL V + ++G+ A+ +
Sbjct: 1033 ITSLPETKLLNKNRQAPHILLVEDNFINQQVVIEMLKKLQCSVQVAENGQEAIHTLE--- 1089
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
+ +D ILMDCQM MDG +A+R IR+ + T ++
Sbjct: 1090 --------------------ESEVKFDAILMDCQMPIMDGYEASRTIRKSQHINYTS-TL 1128
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
PIIA TA ++ C +GM+ +L KP L A +++ +A
Sbjct: 1129 PIIALTANAMKGDKEACLAAGMNAYLTKPIVLAELRAELIKWLA 1172
>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1407
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 29/155 (18%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
++ + G +LLVED Q+I + +L+++ V L ++G EA+ L
Sbjct: 1066 EDMNTISGARILLVEDNEFNQQIAMELLQQMHLAVDLAENG---AEALNL---------- 1112
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
LE +N YDL+LMD QM MDG AT +RR AE +P++A TA
Sbjct: 1113 ---------LEKNN---YDLVLMDMQMPVMDGISATLELRRQARFAE----LPVVAMTAN 1156
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
V + + C ++GM+ FL+KP + LL +++ I
Sbjct: 1157 VLQADRQRCLDAGMNDFLSKPIEPELLWQTLLKWI 1191
>gi|442611793|ref|ZP_21026496.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441746538|emb|CCQ12558.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 752
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 21/133 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED V Q + ++L LG VT+ +G A++ + +H+
Sbjct: 626 VLLVEDNKVNQLVASKLLDNLGLKVTIANNGREAIDVL--------------KVHY---- 667
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ L+LMDCQM MDG +AT+ IR+ EA + IPI+A TA +E C
Sbjct: 668 --QETDPIALVLMDCQMPEMDGFEATQRIRQGEAGTRL-KRIPILALTANAMKGDEENCL 724
Query: 187 NSGMDTFLNKPAQ 199
N+GM+ +L KP Q
Sbjct: 725 NAGMNDYLAKPIQ 737
>gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii]
Length = 905
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
+ PQ GS + P+ + +L V+D + +L +GA VT+
Sbjct: 635 LTPQPTGSQTLGPLGNRAP-----------RLLCVDDNPANLLLVQTLLGDMGAAVTVAD 683
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
G AAVEA +DLI MD QM MDG +ATR I
Sbjct: 684 SGHAAVEAA-------------------------QRERFDLIFMDVQMPGMDGRQATRAI 718
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
R+ EA + PIIA TA A+ R SGMD ++ KP E LA +
Sbjct: 719 RQWEAGQPEQRHTPIIALTAHALANERRALLQSGMDDYMTKPINERQLAQVV 770
>gi|409993593|ref|ZP_11276729.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|409935558|gb|EKN77086.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1035
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 67/142 (47%), Gaps = 30/142 (21%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D+ K L +LL ED V Q + + L++LG V DGEA ++
Sbjct: 773 DKLKAFIPLKILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQ-------------- 818
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIAFTA 175
+LET HYDLILMDCQM +DG + T IRR + Q P IIA TA
Sbjct: 819 --------HLETQ---HYDLILMDCQMPILDGYETTARIRR----RQNSQRPPIIIALTA 863
Query: 176 LVTADNERECFNSGMDTFLNKP 197
V + C +GMD ++ KP
Sbjct: 864 SVMPSDRDRCIEAGMDDYITKP 885
>gi|392538721|ref|ZP_10285858.1| signal transduction histidine kinase two-component system with
Protein-glutamate methylesterase domain
[Pseudoalteromonas marina mano4]
Length = 920
Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 27/147 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + +++ +ML+ +T+ DG A L
Sbjct: 799 ILLVEDNPINRQVIAKMLEPTAVTITMANDGLEA-------------------------L 833
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+T S +DLILMDCQM +MDG + T IR E E + +PIIA TA ++++ C
Sbjct: 834 KTLKSNVFDLILMDCQMPNMDGYECT--IRIRENEIGEDKRVPIIAITANAYEEDKQRCL 891
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ GMD F++KP L + I + +
Sbjct: 892 DVGMDDFISKPVNSQGLYSVIANNLTK 918
>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
Length = 725
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 29/134 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ ML +LG V + ++G+ A++ H I
Sbjct: 599 VLVVEDTLVNQRVTQAMLVRLGVDVVVAENGQVAIDYC---------KHDI--------- 640
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG +A R++R E PI+A TA TA + C
Sbjct: 641 -------FDLIFMDCQMPVMDGYQAARLLR----EHGYAPHTPIVALTANATAQDRENCL 689
Query: 187 NSGMDTFLNKPAQE 200
SGMD ++ KP ++
Sbjct: 690 KSGMDDYIAKPVRK 703
>gi|357404995|ref|YP_004916919.1| Multi-sensor hybrid histidine kinase [Methylomicrobium alcaliphilum
20Z]
gi|351717660|emb|CCE23325.1| Multi-sensor hybrid histidine kinase [Methylomicrobium alcaliphilum
20Z]
Length = 1186
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
++ G +L+ ED + + + + +L +G V ++G A++ +
Sbjct: 832 RRRYAGARLLVAEDNPINREVVLELLHSVGLSVDTAENGRVALDKV-------------- 877
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
S YDLILMD QM MDG ATR IR ++ E + +PI+A TA
Sbjct: 878 -----------RSKQYDLILMDMQMPEMDGLAATRAIR---SQTEYVR-LPILAMTANAF 922
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
++ R CF++GM+ F+ KP +L ++ +AR+ H
Sbjct: 923 DEDRRVCFDAGMNDFIAKPVIPEVLYTVVLRWLAREKH 960
>gi|348030193|ref|YP_004872879.1| GAF sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
gi|347947536|gb|AEP30886.1| GAF sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
Length = 683
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 23/146 (15%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L VL+VED + Q + MLK+ +V DG VEA+ ++
Sbjct: 557 LSHLEVLVVEDNEINQVVVGEMLKQRNITYDIVNDG---VEALA-------------HIQ 600
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
H E + LILMDCQM +MDG TR IR+L T IPIIA TA ++
Sbjct: 601 H----EADRGRSFSLILMDCQMPNMDGYDTTRHIRQLPTPIAT---IPIIALTANAMSEE 653
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+CF GM+ +L+KP + LL + +
Sbjct: 654 RDKCFACGMNEYLSKPVERSLLYSML 679
>gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
102761]
gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
102761]
Length = 570
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 31/134 (23%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED A Q I ML KLG +V +G+ A++ ++
Sbjct: 457 VLVVEDLATNQMIIKLMLTKLGIEPKIVNNGQEAIDIIS--------------------- 495
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +D+ILMDC+M MDG ATR++R G + PIIA TA T EC
Sbjct: 496 ----NTSFDIILMDCRMPVMDGYTATRLLR------NNGYTKPIIALTAGTTTTEREECL 545
Query: 187 NSGMDTFLNKPAQE 200
SGMD L KP Q
Sbjct: 546 TSGMDDILCKPYQR 559
>gi|238917554|ref|YP_002931071.1| two-component system sensor kinase [Eubacterium eligens ATCC 27750]
gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase
[Eubacterium eligens ATCC 27750]
Length = 854
Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 24/142 (16%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
+ + +VLEG L+ ED + + LK GA + KDG AAV A + H
Sbjct: 723 IKQSRVLEGKKFLVAEDNVINAEMMREFLKSEGALCDIAKDGMAAVNAFS---------H 773
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
++ YDLI MD QM +MDG +AT+ IR+L + + IPI+A TA
Sbjct: 774 SVKG-------------QYDLIFMDVQMPNMDGYEATKAIRQL--KHPDAKDIPIVAMTA 818
Query: 176 LVTADNERECFNSGMDTFLNKP 197
+++ + F++GM+ ++KP
Sbjct: 819 DAFSNDVKAAFDAGMNAHISKP 840
>gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum]
Length = 1260
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED + Q+I IR++KKL V+ V +G A+E + A N I +
Sbjct: 1023 VLVVEDNDINQQIAIRLIKKLNFSVSAVSNGLEALE----FLKEAAPNGDITTSLSSTTS 1078
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE------AEAETGQSIPIIAFTALVTAD 180
D+ILMD QM +DG ATR+IR + A +PI+A TA
Sbjct: 1079 TPLCPRRPDIILMDVQMPELDGYSATRIIRSGKLYSYPCAPNRHANDVPIVAMTASAIRG 1138
Query: 181 NERECFNSGMDTFLNKPAQEHLL 203
+ +C +GMD +L KP + L
Sbjct: 1139 DREKCQEAGMDDYLAKPVRSATL 1161
>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
SK209-2-6]
gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
SK209-2-6]
Length = 732
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 32/177 (18%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P AEGS V ++ +D+ L G+ +L+ ED Q + +M++K GA V + +G
Sbjct: 555 PSAEGS-----VCNERKSLDDYD-LNGVRILVAEDNRTNQLVIRKMIEKHGAEVEICANG 608
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
+AAVE+ SP DL+LMD M M+G +ATR IR
Sbjct: 609 QAAVESFA------------------------QSPP-DLVLMDVSMPEMNGYEATRRIRE 643
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
E A+ +PI+A TA T + +C SGM FL+KP ++ ++ I E +A K
Sbjct: 644 GETLAQQ-PPVPILALTANATPKDREKCLQSGMTDFLSKPVRKAVVLQKIEEYLAAK 699
>gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula]
Length = 1260
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 72/154 (46%), Gaps = 38/154 (24%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D AV +R+ LKK GA VT V+ G+AA+ +
Sbjct: 1125 ILVVDDNAVNRRVAEGALKKYGAIVTCVESGKAALAML---------------------- 1162
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAE------------TGQSIPIIAF 173
PH +D MD QM MDG +ATR IR LE+EA PI+A
Sbjct: 1163 ---KPPHNFDACFMDLQMPEMDGFEATRRIRSLESEANEEVASREMFGNVAYWHTPILAM 1219
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
TA V + EC GMD +++KP +E L +A+
Sbjct: 1220 TADVIHSSNEECMKCGMDDYVSKPFEEGQLYSAV 1253
>gi|168038964|ref|XP_001771969.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162676751|gb|EDQ63230.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1040
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 54 TGVDEKKVLEG---LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110
+ V+ K+L+ LS+LL ED A+ Q++ R L+K G VT+V DG+ AV+ +
Sbjct: 898 SSVELGKILDSKVSLSILLAEDNAINQKVASRQLEKHGHVVTIVGDGQQAVDVIC----- 952
Query: 111 AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
H+ +DL+LMD QM MDG AT+ +R+ E + +P+
Sbjct: 953 ----------------SRHD--EFDLVLMDVQMPVMDGLTATQTLRKAERQ-NNWMRLPV 993
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ TA + C GMD +L KP H L I
Sbjct: 994 LGLTAHAIQGYQDTCLKHGMDGYLGKPFDIHQLLKTI 1030
>gi|365895050|ref|ZP_09433176.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. STM 3843]
gi|365424216|emb|CCE05718.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. STM 3843]
Length = 857
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+V+D + + +MLK+ DG AV A
Sbjct: 585 LRVLVVDDNPTNRLVATKMLKEFDIQTDTACDGAEAVTA--------------------- 623
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
N +YDLILMD +M MDG +ATR IR A E +PIIAFTA ++ R
Sbjct: 624 ----ANRFNYDLILMDVRMPEMDGFQATRTIR---ARGERRSEVPIIAFTANAFMEDIRA 676
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ F+ KPA++ L AI+ +
Sbjct: 677 CREAGMNDFVVKPARKKALVEAILRVL 703
>gi|154413864|ref|XP_001579961.1| Response regulator receiver domain containing protein [Trichomonas
vaginalis G3]
gi|121914173|gb|EAY18975.1| Response regulator receiver domain containing protein [Trichomonas
vaginalis G3]
Length = 1420
Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+E + E +L+ ED + Q + ++L+KL +V +G+ A+E +
Sbjct: 1281 NEMQPDETYKILVAEDTPMNQLVISKLLEKLNVKFDIVSNGQEALERL------------ 1328
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
HY +I MD M MDG A R IRR E IPI A TA
Sbjct: 1329 -------------KKEHYSVIFMDHHMPVMDGPTAAREIRRQEKLNSDKYGIPIFAMTAS 1375
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
+ ++E EC SGM+ F++KP H L AI +++ +K
Sbjct: 1376 IMKEDEDECRESGMNQFVSKPISIHKLQQAIRDSLTYPYNK 1416
>gi|392544767|ref|ZP_10291904.1| integral membrane sensor hybrid histidine kinase [Pseudoalteromonas
rubra ATCC 29570]
Length = 797
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 29/131 (22%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED AV Q + +L+KLG VT+V DG+ A++ +
Sbjct: 677 ILLAEDNAVNQIVTKAILEKLGLSVTIVTDGQQALQQL---------------------- 714
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
HYDL+LMD M +MDG +AT+ IR + + + IIA TA V + CF
Sbjct: 715 ---EKEHYDLVLMDMHMPNMDGIEATKAIRSMPQHMQ----LTIIALTANVLIKDIEACF 767
Query: 187 NSGMDTFLNKP 197
+GMD +++KP
Sbjct: 768 AAGMDDYISKP 778
>gi|407684320|ref|YP_006799494.1| diguanylate cyclase [Alteromonas macleodii str. 'English Channel
673']
gi|407245931|gb|AFT75117.1| GGDEF domain protein [Alteromonas macleodii str. 'English Channel
673']
Length = 1373
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 22/141 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED A+ Q + +L+ G V + +G VEA+ L+ ++ K
Sbjct: 1247 ILLVEDNAINQIVATNVLESEGYVVDVANNG---VEALELLKSSKLK------------- 1290
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
HY I+MDCQM MDG +AT++I R A E + +PIIA TA ++ C
Sbjct: 1291 -----AHYSAIVMDCQMPEMDGFEATKLI-RYGAAGEVYKRVPIIAMTANAMQGDKDMCM 1344
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD FL KP + + + + +
Sbjct: 1345 KAGMDDFLTKPIEHNKVTSTL 1365
>gi|384253999|gb|EIE27473.1| hypothetical protein COCSUDRAFT_11065, partial [Coccomyxa
subellipsoidea C-169]
Length = 139
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 26/150 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED + Q + +ML LG + +G+ V+A + G+
Sbjct: 2 VLLAEDNLINQTVAKKMLTVLGLVCEVACNGQEGVDA----------------VKRGA-- 43
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +D +LMD M M G +A RV+RRL G ++PI+A TA + + EC
Sbjct: 44 --ADGRPFDCVLMDMAMPIMGGVEAARVLRRL------GYTLPIVAMTANASDRDRDECL 95
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
N+GMD FL+KP ++ LA AIV+ I+ ++
Sbjct: 96 NAGMDGFLSKPVLKNRLAEAIVQVISGRAR 125
>gi|320589282|gb|EFX01744.1| two-component osmosensing histidine kinase [Grosmannia clavigera
kw1407]
Length = 1307
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 26/147 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ +LL ED V QR+ +++L+K VT+V +GE AVEA+ H+
Sbjct: 1114 KSFDILLAEDNTVNQRLAVKILEKYHHVVTVVGNGEEAVEAV---------KHK------ 1158
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
++D+ILMD QM M G +AT IR E Q PIIA TA +
Sbjct: 1159 ----------NFDVILMDVQMPVMGGVEATSKIREYERSGNV-QRTPIIALTAHAMMGDR 1207
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVE 209
+C + MD +L+KP Q++ L I++
Sbjct: 1208 EKCLQAQMDEYLSKPLQQNHLIETILK 1234
>gi|386827592|ref|ZP_10114699.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428476|gb|EIJ42304.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 762
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 38/173 (21%)
Query: 32 VTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGV 91
V NN PQ E + D + K +LL ED V Q+ +L+ LG V
Sbjct: 615 VINNPFPQTEAEQT-----DSTERFNAK-------ILLAEDNIVNQQYVRLVLEDLGCQV 662
Query: 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151
LV+DGE ++ + L YDLI MDCQM +DG A
Sbjct: 663 DLVEDGEQVLKQLRLQA-------------------------YDLIFMDCQMPHLDGLAA 697
Query: 152 TRVIRRL-EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
T++IR+ A+ +IPIIA TA + C GMD +L+KP + L
Sbjct: 698 TKLIRQQGYLNAKKNHAIPIIALTAHAMQGDREYCLQIGMDDYLSKPVSKQQL 750
>gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
HaA2]
gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
HaA2]
Length = 877
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+ ED A Q + ++ML++ A +V DG A+ A+
Sbjct: 627 LRVLIAEDDATNQMVVLKMLQEFVAETRVVSDGAEALRALA------------------- 667
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++LMD +M +MDG ATR IR A+ +PIIA TA D+ R
Sbjct: 668 ------EEEFDVVLMDVRMPTMDGLAATRAIR---AQGGAFAKLPIIALTANAFPDDIRT 718
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM FL KP ++ L AA++ +
Sbjct: 719 CREAGMSDFLAKPLRKPALVAAVLRAL 745
>gi|410629876|ref|ZP_11340571.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola arctica BSs20135]
gi|410150499|dbj|GAC17438.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola arctica BSs20135]
Length = 1065
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 26/133 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q + ML++ G + +GE A++A+
Sbjct: 940 ILVVEDNVINQMVAQSMLEQYGIQSDVAANGEEALKAL---------------------- 977
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
N P YDL+ MDCQM MDG +ATR IR E++ ++IPIIA TA + +C
Sbjct: 978 --ENFP-YDLVFMDCQMPVMDGFEATRSIRSPESKVR-NKAIPIIAMTANTMQGDREKCI 1033
Query: 187 NSGMDTFLNKPAQ 199
+GM+ F++KP +
Sbjct: 1034 AAGMNDFISKPVE 1046
>gi|415904223|ref|ZP_11552314.1| Sensor protein [Herbaspirillum frisingense GSF30]
gi|407763592|gb|EKF72235.1| Sensor protein [Herbaspirillum frisingense GSF30]
Length = 709
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E S+LLVED + Q++ + L +G V + +G A+E +
Sbjct: 461 EAHSLLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLA----------------- 503
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y LILMDCQM +DG + TR IRR++ E PI+A TA A +
Sbjct: 504 --------QRDYALILMDCQMPVLDGYETTRRIRRMQGEL---MHTPIVAMTANAMAGDR 552
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+C +GMD +L KP LAA + +
Sbjct: 553 EQCLEAGMDDYLTKPLLRSQLAAMLTHYL 581
>gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 939
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 36/173 (20%)
Query: 46 SCPVNDDVTGVDEKK------VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
S P+ + V++K+ +L+ +LLVED A+ + + +L+ G + +G
Sbjct: 667 SLPIGKNENEVNQKQTTPNEDLLQTKRILLVEDNAMNRLVVTTILRPYGVTIVEETNGYN 726
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
AVE + +D++LMD QM MDG +ATR+ R
Sbjct: 727 AVERL-------------------------RKETFDIVLMDVQMPVMDGLEATRITRE-- 759
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
E +S+PIIA TA V + ECFN GM+ FL KP + L + +++ +
Sbjct: 760 ---EISKSLPIIALTASVIRSEKEECFNVGMNDFLAKPFEGKELVSMLMKWLT 809
>gi|440680440|ref|YP_007155235.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428677559|gb|AFZ56325.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1257
Score = 73.6 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 33/156 (21%)
Query: 57 DEKKVLEGLS---VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
DE GLS +L+V+D AV ++ + MLK+LG GEAA++ +
Sbjct: 1129 DENTQPTGLSSTKILVVDDNAVNRKFALLMLKRLGYEAQTADSGEAAIQVLQ-------- 1180
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI-IA 172
HH +D+ILMD QM MDG + T+ IR L ++ + PI IA
Sbjct: 1181 -------HHT----------FDVILMDVQMPGMDGLETTQRIRTLYSDRQQ----PIFIA 1219
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
TA V+++ +CF GM+ FL+KP + LL ++
Sbjct: 1220 LTADVSSETRDKCFACGMNNFLSKPVKIELLQQVLL 1255
>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
gi|291076258|gb|EFE13622.1| response regulator receiver domain protein [Clostridium sp. M62/1]
Length = 889
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 28/150 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL L+VED + + I + + GA V +G+ AVEA
Sbjct: 760 GLRFLVVEDNDLNREIAVTLFSSFGAEVETAVNGKEAVEA-------------------- 799
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
ET +DLILMD QM MDG +ATR+IR L + E G+ IPI+A TA ++++
Sbjct: 800 --FETSEPGFFDLILMDVQMPVMDGYEATRIIRSL--DREDGREIPILAMTANAFSEDKA 855
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ GMD ++KP +VE I R
Sbjct: 856 KSMACGMDGHISKPID----LKEVVEKIER 881
>gi|406597307|ref|YP_006748437.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
gi|406374628|gb|AFS37883.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
Length = 1373
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 22/141 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED A+ Q + +L+ G V + +G VEA+ L+ ++ K
Sbjct: 1247 ILLVEDNAINQIVATNVLESEGYVVDVANNG---VEALELLKSSKLK------------- 1290
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
HY I+MDCQM MDG +AT++I R A E + +PIIA TA ++ C
Sbjct: 1291 -----AHYSAIVMDCQMPEMDGFEATKLI-RYGAAGEVYKRVPIIAMTANAMQGDKDMCM 1344
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD FL KP + + + + +
Sbjct: 1345 KAGMDDFLTKPIEHNKVTSTL 1365
>gi|355647545|ref|ZP_09055102.1| sensor protein gacS [Pseudomonas sp. 2_1_26]
gi|354827866|gb|EHF12004.1| sensor protein gacS [Pseudomonas sp. 2_1_26]
Length = 891
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 649 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 683
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 684 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 742
Query: 203 LAAAIVE 209
LA +++
Sbjct: 743 LAQVVLK 749
>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
Length = 1814
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 33/152 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ G +LLVED A+ Q I +L+ +G VT +G+ AV+ +
Sbjct: 1387 IAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVDLV----------------- 1429
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ--SIPIIAFTALVTA 179
S +DL+LMD QM MDG +AT+VIR TGQ +PIIA TA +
Sbjct: 1430 --------GSQDFDLVLMDIQMPVMDGYQATQVIRN------TGQYDDLPIIAMTANAMS 1475
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
++ +C +GM+ L KP + + A+V+ I
Sbjct: 1476 GDKEKCLAAGMNDHLPKPINPNQVFQALVDWI 1507
>gi|441502822|ref|ZP_20984829.1| CheY-like receiver protein [Photobacterium sp. AK15]
gi|441429038|gb|ELR66493.1| CheY-like receiver protein [Photobacterium sp. AK15]
Length = 806
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 31/171 (18%)
Query: 34 NNIIPQAEGSS-SSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
NN + A + S PV+ + +K++L +VED V Q++ LK+LG
Sbjct: 652 NNTLKAAYSNDYQSRPVSPSPNQISDKQIL------IVEDNKVNQQVVCINLKRLGINYL 705
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+ +G AVE + HH S LILMDC M +DG +AT
Sbjct: 706 IANNGLEAVE--------------LYEKHHDS---------ISLILMDCMMPVLDGFEAT 742
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
+ IR+ EA T IIA TA + D+ ++CF+SGMD +L KP + +L
Sbjct: 743 KAIRQFEAVHHTPHK-HIIALTASILDDDIQKCFDSGMDDYLPKPFKRDVL 792
>gi|403165877|ref|XP_003325810.2| hypothetical protein PGTG_07012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165949|gb|EFP81391.2| hypothetical protein PGTG_07012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 969
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEA--EAETGQSIPIIAFTALVTADNERECFNSGMD 191
YDLILMDCQM +DG ATR IR EA + + +PIIA TA V+ ++ +C SGMD
Sbjct: 889 YDLILMDCQMPELDGLSATRKIREYEAHFRGKRSRPVPIIALTANVSESDQADCRLSGMD 948
Query: 192 TFLNKPAQEHLLAAAI 207
FL KP Q ++L + +
Sbjct: 949 GFLPKPLQINVLKSTL 964
>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
Length = 1293
Score = 73.6 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 41/191 (21%)
Query: 29 PVPVTN-----NIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRM 83
P P+T+ +I+P S+++ D T + L VL+ ED AV + + RM
Sbjct: 1134 PTPLTSPTISTDIVPATASSAATSEFRFDPTLGQRRP----LKVLIAEDNAVNRVVMSRM 1189
Query: 84 LKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143
L++LG L DG +EA+ N P +DL+LMD QM
Sbjct: 1190 LERLGYQPHLANDGPETLEAIL------------------------NQP-FDLVLMDVQM 1224
Query: 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE--- 200
+DG + TR +RR GQ I+A TA T ++ C +GMD FL+KP +
Sbjct: 1225 PKLDGLEVTRAVRR---RLPLGQQPIIVALTANATREDRTACLEAGMDDFLSKPIRPGDL 1281
Query: 201 -HLLAAAIVET 210
HLL +T
Sbjct: 1282 VHLLERVAAQT 1292
>gi|353241632|emb|CCA73434.1| probable nik-1 protein (Os-1p protein) [Piriformospora indica DSM
11827]
Length = 1417
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 49 VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
VN VT D +LL ED V QR+ +R+L+K G V + ++G A+
Sbjct: 1272 VNPPVTSTDTS-----FDILLAEDNLVNQRLAVRILEKYGHTVEIAENGSVALNKFKERW 1326
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
AG +D+ILMD M M G +AT +IR EAE ++
Sbjct: 1327 QRAGN-------------------RFDVILMDVSMPFMGGMEATELIRAYEAEHHLERT- 1366
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
PIIA TA + C +GMD + KP + L AI + + K + S
Sbjct: 1367 PIIALTAHAMIGDRERCLQAGMDDHITKPLRRADLLNAITKQVGHKDARVS 1417
>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
Length = 1272
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K LEG VLLVED + Q + + +L G V+L +G AV+A+ G N
Sbjct: 902 KSLEGARVLLVEDNEINQEVAMEILAAGGVTVSLAANGREAVDAV-------GMN----- 949
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
H+D +LMD QM MDG ATR IR + + +PIIA TA A
Sbjct: 950 -------------HFDAVLMDLQMPVMDGYTATRTIR----QDVRFKDLPIIAMTAHAMA 992
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
D+ + ++GM+ + KP +L + + E I+
Sbjct: 993 DDPDKSRHAGMNAHITKPIDPEVLYSTLAEWIS 1025
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GL L+V+D A + I ML+ VTL GE +E + GK+
Sbjct: 753 LRGLKALVVDDNATSREIFQSMLECFSFDVTLAASGEEGLEEI-------GKS------- 798
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTAD 180
P YD+++MD ++ +DG +A++ I++ TG + IP++ LV+A
Sbjct: 799 ------VGGRP-YDIVVMDWKLPGIDGIEASKRIKK-----NTGLTRIPLV---ILVSAY 843
Query: 181 NERECFN----SGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
E +G+D FL KP ++ I+ +A++ K
Sbjct: 844 AREEIMWRAEAAGLDGFLIKPINASVMFDTIMNALAKEGGK 884
>gi|392411875|ref|YP_006448482.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390625011|gb|AFM26218.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1269
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D ++EG VLLVED A+ Q++ +L G V + +G+ AVEA+
Sbjct: 911 DFADLIEGAKVLLVEDNALNQQVANEILAGAGLFVEIANNGKEAVEAV------------ 958
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+ YDL+LMD QM M G +AT VIR+ + +PI+A TA
Sbjct: 959 -------------ETSEYDLVLMDVQMPVMGGYEATAVIRK----NPRFKDLPIVAMTAH 1001
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
+ EC N+GM+ +++KP L + +V I K S
Sbjct: 1002 AMRGAKEECLNAGMNDYVSKPIDPAQLFSVLVRWIKPKDRPLSS 1045
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 23/165 (13%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+EGL VL+V+D + + + L L V AA I L
Sbjct: 764 VEGLKVLVVDDNPTAREVLVEQLDSLKFRVMSAPSARAA----------------ISELK 807
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S ++P YDL++MD +M MDG +A+RVIR +A+ + II TA D
Sbjct: 808 RSS---AQDAP-YDLVVMDWKMPEMDGIEASRVIRN---DADLQHAPSIIMVTAFGREDV 860
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEA 226
G++ FL KP L+ I++ + + +A A
Sbjct: 861 MTRAEEVGINGFLMKPVTPSLMFDTIMQVFGHEPSTGTIQRRAAA 905
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
G+ LE S DLIL+D M MDG + + RRL+A+ ET + IP++ + +E
Sbjct: 39 GTALEVVRSRKPDLILLDTTMPDMDGYE---ICRRLKAD-ETTRDIPVLFVYTMHEMGDE 94
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
G ++ KP L+ A I
Sbjct: 95 TRGLELGAADYIAKPVNLSLVKAKI 119
>gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
Length = 1165
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED QR+ +LKK+GA V + +G A +
Sbjct: 1033 ILLAEDGPDNQRLICFLLKKMGAEVDVADNGVIACQKFL-------------------EA 1073
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
ET P YDL+L D QM MDG R R E+G ++PIIA TA +D+ ++C
Sbjct: 1074 ETAGEP-YDLLLTDMQMPEMDGYTLARNFR------ESGATLPIIALTAHAMSDDRQKCL 1126
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
N+G D +L+KP +L I+ + K+ K
Sbjct: 1127 NAGCDDYLSKPINSRILGQTILHWLIVKAEK 1157
>gi|373459707|ref|ZP_09551474.1| GAF sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
gi|371721371|gb|EHO43142.1| GAF sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
Length = 807
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 28/152 (18%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V E+++ +G+ +LL ED + Q++ ++++K + +V +G+ A +A
Sbjct: 678 VIEEQIRQGIRILLAEDNMINQKVARKIIEKKNYALDIVNNGKEAYKAAL---------- 727
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
HYD+ILMD QM MDG +AT+ IR ++ + + IPIIA TA
Sbjct: 728 ---------------RQHYDIILMDVQMPVMDGIEATKKIR---SKLDGHRHIPIIAMTA 769
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ +C +GMD +++KP + L A I
Sbjct: 770 HAMKGDREKCLAAGMDDYISKPIKPDDLYAMI 801
>gi|345863685|ref|ZP_08815894.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125234|gb|EGW55105.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 885
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 26/137 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKK-LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
EG+ VLL ED + + + + MLK+ LG V L +G+ AV+A +
Sbjct: 620 FEGVRVLLAEDNPINRDLALIMLKEHLGCQVELAVNGQEAVDAAS--------------- 664
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+ YDLILMDC M +DG A + IRR E + + + IIA TA V A
Sbjct: 665 ----------AVKYDLILMDCHMPELDGFGAAQEIRRRERQLAVNRPVTIIALTADVQAG 714
Query: 181 NERECFNSGMDTFLNKP 197
+++C +GMD +L+KP
Sbjct: 715 VKQKCNTAGMDGYLSKP 731
>gi|406835512|ref|ZP_11095106.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 925
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 40/185 (21%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E + L +LL +D + Q++ +RML++ G V + DG ++ + +
Sbjct: 659 ETTRIRPLQILLADDNLINQKVAVRMLERQGHTVVVANDGTEVLQILAMQ---------- 708
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+D+ILMD QM M G +AT IR +E E TG +PIIA TA
Sbjct: 709 ---------------SFDVILMDVQMPVMGGFEATARIRAIEEE--TGAHLPIIAMTAHA 751
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLA---------AAIVETIARK----SHKFSCDEQA 224
+ C +GM+ +L+KP + LA A+I ET R + F C E
Sbjct: 752 MKGDRERCLGAGMNDYLSKPIKASELAAVLQSVAVPASIPETATRTMTPATETFDCLELM 811
Query: 225 EAQDE 229
++ DE
Sbjct: 812 KSVDE 816
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 36/154 (23%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GLS L+V+D A +RI MLKK G TLV G A+ A++ +AA N Q
Sbjct: 512 LNGLSALVVDDNATNRRILQEMLKKWGMQPTLVDSGSQALSAIS---HAADTNSMFQ--- 565
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
LIL+D +M M+G + I++ A ++ A ++T+DN
Sbjct: 566 --------------LILVDSEMPGMNGFALSEQIKQARACSK--------AIVMMLTSDN 603
Query: 182 ER----ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+R C + G+ + L KP ++AA ++ +I
Sbjct: 604 QRGDAARCRDLGIKSHLVKP----IMAADLLRSI 633
>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 929
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 29/150 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ L++LL ED Q + +L+K G V + ++G A
Sbjct: 665 MPSLTILLAEDGHANQCLATAVLQKWGHEVDVAENGRIA--------------------- 703
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA----EAETGQSIPIIAFTALV 177
E + + YDLILMD QM MDG +AT+ IR EA EA+ G IPIIA TA
Sbjct: 704 ----FEKYLTSRYDLILMDVQMPEMDGYQATQAIRNHEATSKGEAKRGGHIPIIAMTARA 759
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ C ++GMD +++KP + L A+
Sbjct: 760 MKGDRERCLDAGMDEYVSKPIRRKALYEAM 789
>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 863
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L +L+ ED V RML+K G+ VT VKDG+ EA+ L+
Sbjct: 733 LSSLRILIAEDDTVSSLTCKRMLEKTGSSVTSVKDGK---EALQLLCEKV---------- 779
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+DLILMD QM MDG ATR IR A E SIPIIA TA +
Sbjct: 780 ------------FDLILMDIQMPVMDGVDATRAIREGRA-GEDKASIPIIAMTAYAMTGD 826
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + +GM+ +++KP + L I
Sbjct: 827 KEKFLEAGMNDYISKPVEMETLKEVI 852
>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
11109]
gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
11109]
Length = 1121
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 30/147 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LL ED AV Q++ +R+L +LG +V +G A+EA+
Sbjct: 882 LKILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAV-------------------- 921
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIAFTALVTADNER 183
YD++LMD QM MDG +A+R I+ E G++ P IIA TA +
Sbjct: 922 -----RRQSYDVVLMDVQMPEMDGLEASRRIKL----GEAGRAAPRIIALTADAMQGDRE 972
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVET 210
+C +GMD +L KP + L A+ T
Sbjct: 973 KCLAAGMDDYLTKPIKVEALVDALTRT 999
>gi|421169703|ref|ZP_15627710.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
gi|404525842|gb|EKA36090.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
Length = 925
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 683 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 717
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 718 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 776
Query: 203 LAAAIVE 209
LA +++
Sbjct: 777 LAQVVLK 783
>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
gi|386064653|ref|YP_005979957.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCGM2.S1]
gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
gi|348033212|dbj|BAK88572.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCGM2.S1]
Length = 925
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 683 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 717
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 718 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 776
Query: 203 LAAAIVE 209
LA +++
Sbjct: 777 LAQVVLK 783
>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
gi|416858722|ref|ZP_11913491.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
gi|416875649|ref|ZP_11918807.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
gi|418583609|ref|ZP_13147678.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|418588974|ref|ZP_13152904.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|421155575|ref|ZP_15615050.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|421162461|ref|ZP_15621303.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|421176074|ref|ZP_15633743.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|421182074|ref|ZP_15639559.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|421515550|ref|ZP_15962236.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|424940011|ref|ZP_18355774.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCMG1179]
gi|451987425|ref|ZP_21935583.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudomonas
aeruginosa 18A]
gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
gi|334839207|gb|EGM17900.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
gi|334841748|gb|EGM20370.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
gi|346056457|dbj|GAA16340.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCMG1179]
gi|375047217|gb|EHS39766.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|375052133|gb|EHS44592.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|404349278|gb|EJZ75615.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|404520272|gb|EKA30952.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|404531425|gb|EKA41380.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|404534541|gb|EKA44273.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|404542794|gb|EKA52103.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|451755043|emb|CCQ88106.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudomonas
aeruginosa 18A]
gi|453047953|gb|EME95666.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PA21_ST175]
Length = 925
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 683 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 717
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 718 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 776
Query: 203 LAAAIVE 209
LA +++
Sbjct: 777 LAQVVLK 783
>gi|392985595|ref|YP_006484182.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|419753893|ref|ZP_14280291.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|384399832|gb|EIE46197.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321100|gb|AFM66480.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
Length = 925
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 683 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 717
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 718 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 776
Query: 203 LAAAIVE 209
LA +++
Sbjct: 777 LAQVVLK 783
>gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula]
gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula]
Length = 1269
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 80/175 (45%), Gaps = 48/175 (27%)
Query: 56 VDEKKV--LEGL----SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMIN 109
+D KKV LE L +L+V+D AV +++ +L+K GA VT V G+AA++ +
Sbjct: 1059 IDRKKVSQLENLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAALKVL----- 1113
Query: 110 AAGKNHQIQNLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAE----- 163
PH +D MD QM MDG + TR IR +E E
Sbjct: 1114 --------------------KPPHNFDACFMDLQMPEMDGFEVTRRIRYMENEVNEKIAC 1153
Query: 164 -----------TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ IPI+A TA VT + EC GMD F++KP +E L A+
Sbjct: 1154 GEELAEMFGNISYWHIPILAMTADVTQASNEECKKCGMDDFVSKPFEEEQLYTAV 1208
>gi|197103756|ref|YP_002129133.1| sensory box histidine kinase/response regulator [Phenylobacterium
zucineum HLK1]
gi|196477176|gb|ACG76704.1| sensory box histidine kinase/response regulator [Phenylobacterium
zucineum HLK1]
Length = 788
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VLEGL VL+VED A + I ++L+ LGA V DG VEA A G
Sbjct: 648 VLEGLRVLVVEDNATNRLIATKLLENLGASVETAADGYLGVEAA-----ARGG------- 695
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+DLILMD QM +DG +A R IR L +IPI+A TA V +
Sbjct: 696 -------------FDLILMDVQMPGIDGLEAARRIRALGGNV---AAIPIVALTANVLSH 739
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ +GMD + KP + AA++ IAR S
Sbjct: 740 QRQSYLEAGMDGVVGKP----ISPAALLSEIARLS 770
>gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2]
gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
Length = 651
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRQVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
Length = 916
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 90/202 (44%), Gaps = 37/202 (18%)
Query: 24 QLEFKPVPVTNNI-IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIR 82
QL+ KP P T + E S P ++ +T D ++ +L V+D +
Sbjct: 629 QLQAKP-PCTRKLHKALVEMVSPQRPASEPITIGDTRRP----QILCVDDNPANLLLVQT 683
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+EA + G +DL+ MD Q
Sbjct: 684 LLDDLGAQVTAVDSGYAAIEA----------------IQQGC---------FDLVFMDVQ 718
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IR+ E AE + PIIA TA A+ +R SGMD +L KP E
Sbjct: 719 MPGMDGREATEAIRQWEG-AEGRSATPIIALTAHALANEKRALLQSGMDDYLTKPINERQ 777
Query: 203 LAAAIVETIA-----RKSHKFS 219
LA +++ + SH+ S
Sbjct: 778 LAQVVLKWTGLNLRNQPSHRVS 799
>gi|254228144|ref|ZP_04921573.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
gi|262393930|ref|YP_003285784.1| sensor/response regulator hybrid [Vibrio sp. Ex25]
gi|151939217|gb|EDN58046.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
gi|262337524|gb|ACY51319.1| probable sensor/response regulator hybrid [Vibrio sp. Ex25]
Length = 566
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 78/161 (48%), Gaps = 33/161 (20%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
IP EG + + T E+ L G S+L+V+D + Q I +MLKKL L +
Sbjct: 423 IPLKEGQAQGAAEGELAT--IERSDLAGRSILVVDDIRMNQVIVTQMLKKLDITPDLKAN 480
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G+ A+EA+ KN + Y+LI MDC+M MDG +AT +R
Sbjct: 481 GKEALEAV--------KNKE-----------------YELIFMDCRMPEMDGYEATMYLR 515
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
E G + PIIA TA T + ++C +SGMD L KP
Sbjct: 516 ------ERGFTHPIIALTAGTTIEERQKCIDSGMDDILTKP 550
>gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Bermanella marisrubri]
gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
Length = 908
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 24/159 (15%)
Query: 49 VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
+ D T + K L GL +L+ ED V Q + +L+KLGA ++ +GE
Sbjct: 768 IQRDQTEIISDKPLNGLYILVAEDNEVNQMVIKALLRKLGAESKILDNGEKI-------- 819
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
I +H N HYDLILMDC+M MDG AT+ IR E + I
Sbjct: 820 --------IAEIHRKRN-------HYDLILMDCEMPIMDGFVATKNIRH-EETTHGHKPI 863
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
PI+A TA ++ + SGM+ F++KP ++ L +I
Sbjct: 864 PIVALTAHAMDIHKEQAKQSGMNDFVSKPIKQDELIKSI 902
>gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
sp. 3_1_syn3]
gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
sp. 3_1_syn3]
Length = 1411
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 24/138 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ GL VLLVED V Q + R+L+ G V++ +G+A EA
Sbjct: 1281 ISGLRVLLVEDNEVNQLVAQRILESEGVTVSIAANGKAGWEA------------------ 1322
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
E+ +D + MD QM MDG +ATR IRR + IP+IA TA A +
Sbjct: 1323 ----FESSAPEAFDAVFMDIQMPVMDGYEATRAIRR--SGHARAADIPVIAMTANAFAGD 1376
Query: 182 ERECFNSGMDTFLNKPAQ 199
R C N+GM+ + KP +
Sbjct: 1377 VRRCLNAGMNAHIAKPIE 1394
>gi|386060172|ref|YP_005976694.1| sensor/response regulator hybrid [Pseudomonas aeruginosa M18]
gi|347306478|gb|AEO76592.1| sensor/response regulator hybrid [Pseudomonas aeruginosa M18]
Length = 925
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 683 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 717
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 718 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 776
Query: 203 LAAAIVE 209
LA +++
Sbjct: 777 LAQVVLK 783
>gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|386059499|ref|YP_005976021.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|392984925|ref|YP_006483512.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|416854091|ref|ZP_11910666.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|419755526|ref|ZP_14281881.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|420140534|ref|ZP_14648289.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|421154704|ref|ZP_15614206.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|421161608|ref|ZP_15620546.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|421181297|ref|ZP_15638811.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|424940830|ref|ZP_18356593.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
gi|451984365|ref|ZP_21932619.1| Sensor histidine kinase/response regulator [Pseudomonas aeruginosa
18A]
gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|334844493|gb|EGM23067.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|346057276|dbj|GAA17159.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
gi|347305805|gb|AEO75919.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|384398223|gb|EIE44631.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|392320430|gb|AFM65810.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
DK2]
gi|403246700|gb|EJY60401.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|404521612|gb|EKA32183.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|404539334|gb|EKA48820.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|404544094|gb|EKA53302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|451757982|emb|CCQ85142.1| Sensor histidine kinase/response regulator [Pseudomonas aeruginosa
18A]
gi|453046967|gb|EME94682.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PA21_ST175]
Length = 651
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRQVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
Length = 651
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRQVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
Length = 835
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 28/146 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLV+D V +R+ +ML+KLG V + +G AV+ K+ ++
Sbjct: 711 VLLVDDTPVNRRLAGKMLEKLGLVVDIAVNGREAVD----------KSAELS-------- 752
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLI MDCQM MDG +AT IR EA + PIIA TA ++ + C
Sbjct: 753 -------YDLIFMDCQMPEMDGFEATTRIRSREAGS---AHTPIIAMTASAMPEDRKRCI 802
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIA 212
+ GMD +++KP ++ L + + +A
Sbjct: 803 DVGMDDYISKPVRQDTLRSTVSRWLA 828
>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
gi|452879919|ref|ZP_21956970.1| sensor/response regulator hybrid [Pseudomonas aeruginosa VRFPA01]
gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
gi|452183578|gb|EME10596.1| sensor/response regulator hybrid [Pseudomonas aeruginosa VRFPA01]
Length = 925
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 26/127 (20%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L LGA VT V G AA+E + +DL+ MD Q
Sbjct: 683 LLSDLGAQVTAVDSGYAALEVV-------------------------QRERFDLVFMDVQ 717
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IRR EAE E +P+IA TA ++ +R +GMD +L KP E
Sbjct: 718 MPGMDGRQATEAIRRWEAEREVS-PVPVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQ 776
Query: 203 LAAAIVE 209
LA +++
Sbjct: 777 LAQVVLK 783
>gi|386065441|ref|YP_005980745.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
gi|348034000|dbj|BAK89360.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
Length = 651
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRRVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
Length = 1266
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 29/145 (20%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
KK L+G VL+ ED Q I + +L++ G V +V +G+ AV+A+
Sbjct: 912 KKRLKGFRVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAV-------------- 957
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+D +LMD QM MDG +ATR IR+ +AE + +PIIA TA
Sbjct: 958 -----------RESQFDALLMDIQMPVMDGYEATRQIRK---DAEF-KDLPIIAMTAHAM 1002
Query: 179 ADNERECFNSGMDTFLNKPAQEHLL 203
+E EC +GM+ ++ KP + +L
Sbjct: 1003 KGDEEECLKAGMNGYIPKPVSQDML 1027
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L+GL+VL+V+D Q I +ML+ G V + +A+ +Q L
Sbjct: 766 LQGLNVLVVDDCKDSQNIMEKMLESFGFKVESISSAQAS----------------LQRLR 809
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
ET +P DL++MD M +DG +A+ +IR + ++PII TA
Sbjct: 810 ED---ETRENP-IDLVMMDWLMPGLDGIEASSIIR-----DDLKLNVPIIMMTAFGNETQ 860
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
G++ FL KP + L AI++ +K K
Sbjct: 861 MLYAEKVGVNGFLTKPICQSTLFDAIMDAFGKKRAK 896
>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1210
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 26/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED V + + + ML++LG V + ++G A+ A
Sbjct: 935 ILLAEDSPVNREVAVGMLEQLGYEVEVAENGRQALAAA---------------------- 972
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H+D++LMDCQM MDG AT IRR E A + +PIIA TA + C
Sbjct: 973 ---ERDHFDIVLMDCQMPEMDGLTATGEIRRRET-ASGRRRLPIIALTAHAMQGDREHCL 1028
Query: 187 NSGMDTFLNKP 197
+GMD +L+KP
Sbjct: 1029 TAGMDDYLSKP 1039
>gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 878
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L K G + +G+ A+EA+T
Sbjct: 757 ILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAIT--------------------- 795
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG AT+ IRR E E + + I IIA TA V ++ + CF
Sbjct: 796 ---TGEQFDAILMDCMMPVMDGLTATKEIRRWEKEVGSDK-ITIIALTASVLEEDIQNCF 851
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 852 AAGMDAYLPKPYKSNQL 868
>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
Length = 993
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 37 IPQAEGSSSSCPVNDDVT-GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
+ Q G+ + D++ G + +L G +L+V+D V +R+ LK GA V
Sbjct: 820 LQQVFGTGKTRQFGKDMSNGSSVRSLLCGKKILVVDDNLVNRRVAAGALKNFGADVKCAA 879
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRV 154
G+AA+E + PH +D MD QM MDG +ATR
Sbjct: 880 SGKAALEML-------------------------QYPHDFDACFMDIQMPEMDGFEATRR 914
Query: 155 IRRLEAEA------ETGQS--------IPIIAFTALVTADNERECFNSGMDTFLNKPAQE 200
IR +E EA E+G+ +PI+A TA V +C N GMD +++KP +E
Sbjct: 915 IRMMEREASEQLKSESGEENGKKSEFHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEE 974
Query: 201 HLLAAAIVETIARK 214
L A+ + K
Sbjct: 975 ENLYQAVAKFFKSK 988
>gi|427725989|ref|YP_007073266.1| multi-sensor hybrid histidine kinase [Leptolyngbya sp. PCC 7376]
gi|427357709|gb|AFY40432.1| multi-sensor hybrid histidine kinase [Leptolyngbya sp. PCC 7376]
Length = 837
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
LL ED V Q + + KK G + + +G+ A+E Q+Q+ S +
Sbjct: 711 FLLAEDNQVNQLVMRGLFKKRGLTIEIANNGQEALE-------------QLQS----SAI 753
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ N P YDLI MDCQM MDG +AT++IR +A E Q++PIIA TA + +C
Sbjct: 754 D--NKP-YDLIFMDCQMPVMDGYEATQLIRNGQA-GEQYQAVPIIAITANAMKGDREKCL 809
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+SGM+ +++KP L + E +
Sbjct: 810 SSGMNDYISKPINPQELERVVKEWL 834
>gi|392579684|gb|EIW72811.1| hypothetical protein TREMEDRAFT_26505 [Tremella mesenterica DSM 1558]
Length = 1406
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Query: 7 QAETTSHP--EKLELEHGLQLEFK-PVPV---TNNIIPQAEGSSSSCPVNDDVTGVDEKK 60
+AE TS P KL L+ G+ F P+ + +N +IP E S P D V +
Sbjct: 1160 EAEQTSLPIPVKLCLDFGINSYFTTPLSLHELSNALIPALE--SHQTPSGDSV----KDT 1213
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VL+ +LL ED V Q++ +++L+ G + + +GE A+E K Q+
Sbjct: 1214 VLD---ILLAEDNLVNQKLAVKLLETAGHQIDVADNGEVAIEKY--------KRKQLAR- 1261
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
YD+ILMD M M G +AT IR E EAE PIIA TA
Sbjct: 1262 -----------KPYDVILMDVSMPVMGGMEATGRIREYE-EAEGVFRTPIIALTAHAMIG 1309
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAI 207
++ C ++GM +L KP + L AAI
Sbjct: 1310 DKERCLDAGMTDYLTKPLRRGDLLAAI 1336
>gi|383758337|ref|YP_005437322.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381379006|dbj|BAL95823.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 1071
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 31/155 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+GL LLVED + + +G+ +L++ G V DG AV +
Sbjct: 813 FDGLQALLVEDNDINREVGVELLREHGLEVDTAHDGREAVHCV----------------- 855
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTAD 180
HYD++ MD QM MDG ATR IR L G ++PI+A TA + AD
Sbjct: 856 --------RERHYDIVFMDMQMPVMDGLDATRAIRLLPG----GTALPIVAMTANALPAD 903
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
ER C +GMD + KP +LAA + + R++
Sbjct: 904 RER-CLAAGMDDHVAKPIDPAVLAARLRHWLGREA 937
>gi|365892166|ref|ZP_09430497.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. STM 3809]
gi|365331831|emb|CCE03028.1| putative Sensor histidine kinase with PAS and Response regulator
receiver domains [Bradyrhizobium sp. STM 3809]
Length = 746
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL++L+ ED + + +L KLG + GEAA+++ L +AG
Sbjct: 613 GLAILVAEDNDINALLMRSLLTKLGHHADIAVHGEAALDSW-LAARSAG----------- 660
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+P YDLILMD QM +DG A + IR LEA E G+ PI+A TA ++
Sbjct: 661 -------TP-YDLILMDVQMPRLDGIAAAKRIRALEA-TEAGRRTPILALTANTLVEDRY 711
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
CF +GMD FL KP L A+ A +
Sbjct: 712 ACFEAGMDGFLVKPIDRDKLDEALANLAAAR 742
>gi|345878009|ref|ZP_08829739.1| multi-sensor hybrid histidine kinase [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344224988|gb|EGV51361.1| multi-sensor hybrid histidine kinase [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 891
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 26/137 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKK-LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
EG+ VLL ED + + + + MLK+ LG V L +G+ AV+A +
Sbjct: 626 FEGVRVLLAEDNPINRDLALIMLKEHLGCQVELAVNGQEAVDAAS--------------- 670
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
+ YDLILMDC M +DG A + IRR E + + + IIA TA V A
Sbjct: 671 ----------AVKYDLILMDCHMPELDGFGAAQEIRRRERQLAVNRPVTIIALTADVQAG 720
Query: 181 NERECFNSGMDTFLNKP 197
+++C +GMD +L+KP
Sbjct: 721 VKQKCNTAGMDGYLSKP 737
>gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|418587014|ref|ZP_13151050.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|418592525|ref|ZP_13156395.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|421516246|ref|ZP_15962932.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
gi|375042361|gb|EHS35015.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|375048700|gb|EHS41217.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|404349974|gb|EJZ76311.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
Length = 651
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRRVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|372488556|ref|YP_005028121.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359355109|gb|AEV26280.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 839
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 27/150 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LL ED ++ Q + +L+ G V + DG AV
Sbjct: 711 GTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVAC-------------------- 750
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
LE +P Y L+LMD QM MDG +ATR IRRL +S+PII+ TA ++
Sbjct: 751 --LERGTTP-YALVLMDMQMPGMDGLEATRHIRRLPGM----ESLPIISMTANAFGEDRE 803
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
C +GM+ F+ KP +L A +++ + R
Sbjct: 804 RCLEAGMNDFVPKPVNPEVLYAMLLKWLPR 833
>gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PAb1]
gi|355644508|ref|ZP_09053820.1| hypothetical protein HMPREF1030_02906 [Pseudomonas sp. 2_1_26]
gi|416875746|ref|ZP_11918867.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
gi|334841678|gb|EGM20302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
gi|354829189|gb|EHF13272.1| hypothetical protein HMPREF1030_02906 [Pseudomonas sp. 2_1_26]
Length = 651
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRRVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|451846384|gb|EMD59694.1| hypothetical protein COCSADRAFT_252791 [Cochliobolus sativus ND90Pr]
Length = 1171
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ VL+ ED Q + +RMLK VT+ KDG+ A++ +
Sbjct: 986 VKVLVAEDNKTNQEVVLRMLKLEDVYDVTVAKDGQEALDKVK------------------ 1027
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++E +P Y+LI MD QM ++DG ++TR+IR ++G S PI+A TA N +
Sbjct: 1028 ESME-RQAP-YNLIFMDVQMPNLDGLQSTRLIR------QSGFSAPIVALTAYAEESNVK 1079
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL+KP + L
Sbjct: 1080 ECLESGMDFFLSKPIRRPAL 1099
>gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
Length = 651
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRRVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|381167829|ref|ZP_09877034.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
gi|380682905|emb|CCG41846.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
Length = 1087
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 44/169 (26%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
P+ I+P A+ ++ P L +L+ ED A+ Q++ + +L KLG
Sbjct: 828 PIDTPQTIVPAADFPIATTP----------------LRILVAEDNAINQQVAVGLLAKLG 871
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
+ DG AVE + AAG+ YDL++MD QM +DG
Sbjct: 872 HRADVADDGAEAVERV-----AAGE--------------------YDLVMMDMQMPHIDG 906
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
ATR+IR L A + IIA TA +D+ C +GMD +++KP
Sbjct: 907 LGATRLIRALPAPK---AKVTIIAMTANAMSDDRDTCLAAGMDDYISKP 952
>gi|119718530|ref|YP_925495.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
gi|119539191|gb|ABL83808.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
Length = 1090
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G+ VL+VED V Q + +L+ LG V +V DG AV +T
Sbjct: 828 GIRVLVVEDNQVNQLVAAGLLENLGCTVDVVSDGVEAVRLLT------------------ 869
Query: 124 SNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
PH Y LMDC+M +DG ATR +RR E G+ +PIIA TA
Sbjct: 870 -------RPHEYAAALMDCRMPRLDGFDATRQVRRHEP---VGRRVPIIALTASAMEGER 919
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVE 209
C ++GMD +L KP L I E
Sbjct: 920 ERCLDAGMDDYLTKPVDTAELERVIRE 946
>gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493]
gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493]
Length = 683
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED + QRI ML+++G V + G+ A+E M
Sbjct: 565 MNVLVVEDNLINQRISKIMLEQVGCQVDIAGCGKDAIEKM-------------------- 604
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++ MD + MDG + T+ IR E GQ +PI+A TA V A + +
Sbjct: 605 ------KKHYDMVFMDIGLPDMDGFETTQCIRHNET---PGQRVPIVAMTAHVFAQDRKR 655
Query: 185 CFNSGMDTFLNKP 197
CF+ GMD + KP
Sbjct: 656 CFDVGMDEVMAKP 668
>gi|407689219|ref|YP_006804392.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292599|gb|AFT96911.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 702
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 23/142 (16%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
+ K+ L L+VED + Q + LK++G L ++GE AVE + + GK
Sbjct: 555 IPSKQELSAFKALIVEDNEINQLVIKEQLKEIGIAADLAENGEEAVEKVKSALK--GK-- 610
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
SP Y +ILMDC M MDG +AT++IR + + + IPIIA TA
Sbjct: 611 ---------------SP-YTIILMDCHMPVMDGLEATKLIRSM---GDKARDIPIIALTA 651
Query: 176 LVTADNERECFNSGMDTFLNKP 197
++ +C SGM+ F++KP
Sbjct: 652 NALTGDKEKCLKSGMNDFISKP 673
>gi|372271293|ref|ZP_09507341.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 874
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 29/157 (18%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D + EGL++L+ ED V +++ ++++ GA L +DG +EA+ +G++
Sbjct: 609 DATSITEGLNILIAEDNPVNRKMMEVLMERAGAEYHLCEDGLEVLEALN-----SGQS-- 661
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA-EAETGQSIPIIAFTA 175
+DL+LMD M ++DG TR IR+L +AE IPIIA TA
Sbjct: 662 -----------------FDLVLMDVHMPNLDGLDTTRAIRQLSGPQAE----IPIIAVTA 700
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
A + +C +GMD +L KP + L I T+A
Sbjct: 701 DALAGDREKCLAAGMDDYLTKPVRLSKLQQVIGRTLA 737
>gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
Ellin6076]
gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
Ellin6076]
Length = 1092
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+ ED AV QR+ + G +V +G+ A++A++ M
Sbjct: 970 VLIAEDNAVNQRVARLQVAHCGFDSDVVSNGQEALDALSHM------------------- 1010
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+Y L+LMDCQM MDG ATR +RR E A + +P+IA TA A + C
Sbjct: 1011 ------NYALVLMDCQMPGMDGYAATRELRRRENGA---RHLPVIALTANAFATDREACL 1061
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
+GMD L+KP LAA +
Sbjct: 1062 EAGMDDHLSKPVSLRSLAAIL 1082
>gi|116049556|ref|YP_791640.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421175303|ref|ZP_15632993.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404532594|gb|EKA42472.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
Length = 651
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVR--------------------- 552
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 553 ----SAERQRYDAILMDCRLPVLDGYSATREIR----AQENGRRVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|386399349|ref|ZP_10084127.1| PAS domain S-box [Bradyrhizobium sp. WSM1253]
gi|385739975|gb|EIG60171.1| PAS domain S-box [Bradyrhizobium sp. WSM1253]
Length = 741
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 21/135 (15%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+GLSVL+ ED + + +L KLG V + +GEAA+E+ L ++AG
Sbjct: 607 KGLSVLVAEDNEINALLMRSLLTKLGHRVIIAINGEAALESW-LGASSAG---------- 655
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+P YDL+LMD QM +DG + T+ IR EA A+ G PI+A TA ++
Sbjct: 656 --------TP-YDLVLMDIQMPQLDGIETTKRIRAHEA-AKGGHHTPILALTANTLVEDR 705
Query: 183 RECFNSGMDTFLNKP 197
CF +GM+ FL KP
Sbjct: 706 YACFEAGMNGFLIKP 720
>gi|329896032|ref|ZP_08271268.1| putative sensor protein [gamma proteobacterium IMCC3088]
gi|328921992|gb|EGG29356.1| putative sensor protein [gamma proteobacterium IMCC3088]
Length = 1448
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 29/200 (14%)
Query: 29 PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG 88
P P T+ ++ ++ GS S+ +D ++ K L VL+V+D + ++I L+ G
Sbjct: 1160 PFPTTSELLIKSFGSLSTSEDQEDDRLMETKARKSSLKVLVVDDIEINRKIMSETLRYFG 1219
Query: 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148
L DG +EA +E + ++LI MDCQM MDG
Sbjct: 1220 IECDLASDG---IEA----------------------IEKYKRTSHNLIFMDCQMPRMDG 1254
Query: 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+ATR IR A T IIA TA T + + C NSGM+ + KP H + ++
Sbjct: 1255 LEATRRIREYSATINTEPF--IIAVTAGTTGEEQEACINSGMNLVIEKPFT-HEKISLLI 1311
Query: 209 ETIARKSHKFSCDEQAEAQD 228
E I+ K+ Q EA D
Sbjct: 1312 EEISGKN-DLQLPPQLEATD 1330
>gi|119475524|ref|ZP_01615877.1| sensory box histidine kinase/response regulator [marine gamma
proteobacterium HTCC2143]
gi|119451727|gb|EAW32960.1| sensory box histidine kinase/response regulator [marine gamma
proteobacterium HTCC2143]
Length = 560
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 69/134 (51%), Gaps = 25/134 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVED + Q + + +L+ L V + DG AV AM
Sbjct: 432 LRVLLVEDNVINQEVMVAILRSLKIHVDVANDGFDAV-AM-------------------- 470
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
L+ P +DLILMDCQM ++DG + TR IR + E IPIIA TA T ++ERE
Sbjct: 471 -LKCTELPTFDLILMDCQMPNLDGYETTRRIRSGDV-GELLSKIPIIALTA-NTMNSERE 527
Query: 185 -CFNSGMDTFLNKP 197
C N GM+ +L KP
Sbjct: 528 KCINVGMNEYLTKP 541
>gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
Length = 683
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED + QRI ML+++G V + G+ A+E M
Sbjct: 565 MNVLVVEDNLINQRISKIMLEQVGCQVDIAGCGKDAIEKM-------------------- 604
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++ MD + MDG + T+ IR E GQ +PI+A TA V A + +
Sbjct: 605 ------KKHYDMVFMDIGLPDMDGFETTQCIRHNET---PGQRVPIVAMTAHVFAQDRKR 655
Query: 185 CFNSGMDTFLNKP 197
CF+ GMD + KP
Sbjct: 656 CFDVGMDEVMAKP 668
>gi|302308789|ref|NP_985831.2| AFR284Wp [Ashbya gossypii ATCC 10895]
gi|299790795|gb|AAS53655.2| AFR284Wp [Ashbya gossypii ATCC 10895]
gi|374109062|gb|AEY97968.1| FAFR284Wp [Ashbya gossypii FDAG1]
Length = 1103
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L +L+ ED V Q + RML GA + L DGE A + ++ ++
Sbjct: 976 LRILVAEDNNVNQEVIKRMLHLEGAHNIDLACDGEDAYQKVSALV--------------- 1020
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIR-RLEAEAETGQSIPIIAFTALVTADNE 182
HYDLI MD QM MDG T+++R +L E PI+A TA N
Sbjct: 1021 -----EQGEHYDLIFMDVQMPRMDGLLTTKLLRQKLHYE------YPIVALTAFADDSNI 1069
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVE 209
+EC SGM++FL KP + +L ++E
Sbjct: 1070 KECLESGMNSFLAKPIKRPMLKKILLE 1096
>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1209
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 27/165 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L +LL ED V Q + +R+L + G V V DG AV+A+
Sbjct: 951 LRPLKILLAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALA---------------- 994
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
++DL+LMD QM MDG +ATR+IR E E E P+IA TA +
Sbjct: 995 ---------RENFDLVLMDVQMPVMDGLEATRLIRAREQE-EGLLRTPVIAITAHALKGD 1044
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEA 226
+C +GMD+++ KP ++ L I + S + S +E EA
Sbjct: 1045 REKCLEAGMDSYVQKPIRKADLFKEIKAVLGEHSGR-SQEEMEEA 1088
>gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella
burnetii RSA 331]
gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like
domain/response regulator receiver domain protein
[Coxiella burnetii RSA 331]
Length = 669
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED + QRI ML+++G V + G+ A+E M
Sbjct: 551 MNVLVVEDNLINQRISKIMLEQVGCQVDIAGCGKDAIEKM-------------------- 590
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++ MD + MDG + T+ IR E GQ +PI+A TA V A + +
Sbjct: 591 ------KKHYDMVFMDIGLPDMDGFETTQCIRHNET---PGQRVPIVAMTAHVFAQDRKR 641
Query: 185 CFNSGMDTFLNKP 197
CF+ GMD + KP
Sbjct: 642 CFDVGMDEVMAKP 654
>gi|395761501|ref|ZP_10442170.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum
PAMC 25724]
Length = 966
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 65/145 (44%), Gaps = 25/145 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED V + + ML LG V ++GE A++A
Sbjct: 695 VLLAEDNHVNVEVALAMLDSLGLDVVCARNGEEALQAA---------------------- 732
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ +DLILMDCQM MDG AT IRR E + + +PI+A TA + C
Sbjct: 733 ---QAEDFDLILMDCQMPVMDGFAATAEIRRHEQQCGHARVLPIVAITANALQGDREACL 789
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETI 211
+GMD +L+KP + L I I
Sbjct: 790 AAGMDDYLSKPFTQQDLGHTIARWI 814
>gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001]
Length = 1390
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+VED A+ Q+I + + KLG VT +G+ A+E M AA K +
Sbjct: 1101 IRVLVVEDNAINQQIATKTIMKLGFSVTAAWNGKDALEYM-----AAAKQGK-------- 1147
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
P D+ILMD QM +DG K T ++R Q +PI+A TA ++ +
Sbjct: 1148 ----RAKP--DIILMDVQMPVIDGYKCTHLLRHHVPYKAYLQDVPIVAMTASAIQGDKEK 1201
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE-TIARKSHK 217
C +GMD +L KP + L +V ++A++ +
Sbjct: 1202 CTRAGMDDYLAKPVKSKTLERMLVRWSLAKRPQR 1235
>gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like
domain/response regulator receiver domain protein
[Coxiella burnetii Q321]
gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like
domain/response regulator receiver domain protein
[Coxiella burnetii Q321]
Length = 669
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED + QRI ML+++G V + G+ A+E M
Sbjct: 551 MNVLVVEDNLINQRISKIMLEQVGCQVDIAGCGKDAIEKM-------------------- 590
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++ MD + MDG + T+ IR E GQ +PI+A TA V A + +
Sbjct: 591 ------KKHYDMVFMDIGLPDMDGFETTQCIRHNET---PGQRVPIVAMTAHVFAQDRKR 641
Query: 185 CFNSGMDTFLNKP 197
CF+ GMD + KP
Sbjct: 642 CFDVGMDEVMAKP 654
>gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 1015
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+K L G+SVL+ +D+A+ + + +L + GAGV LV +G AVE +
Sbjct: 887 RKPLAGISVLVADDEAINRLVLEEILIEYGAGVVLVSNGLEAVERV-------------- 932
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+H G + YD++LMD QM MDG +ATR I L E +PIIA TA
Sbjct: 933 -IHDGQD-------AYDVVLMDLQMPEMDGFEATRRIHELLPE------LPIIAQTAHAF 978
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
++ ++CF +GM + KP + L I++ + K
Sbjct: 979 SEERQKCFATGMVDHIAKPIEPEALGKIILQHVLSK 1014
>gi|345892952|ref|ZP_08843761.1| hypothetical protein HMPREF1022_02421 [Desulfovibrio sp. 6_1_46AFAA]
gi|345046757|gb|EGW50637.1| hypothetical protein HMPREF1022_02421 [Desulfovibrio sp. 6_1_46AFAA]
Length = 1542
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 24/138 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ GL VLLVED V Q + R+L+ G V++ +G+A EA
Sbjct: 1412 ISGLHVLLVEDNEVNQLVAQRILESEGVTVSIADNGKAGWEA------------------ 1453
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
E+ +D + MD QM MDG +ATR IRR + IP+IA TA A +
Sbjct: 1454 ----FESSAPEAFDAVFMDIQMPVMDGYEATRAIRR--SGHARAADIPVIAMTANAFAGD 1507
Query: 182 ERECFNSGMDTFLNKPAQ 199
R C N+GM+ + KP +
Sbjct: 1508 VRRCLNAGMNAHIAKPIE 1525
>gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina
ATCC 23134]
gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina
ATCC 23134]
Length = 1075
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 31/144 (21%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K+L+G VLL ED + Q + +L++ G V + +DG+ A+E +
Sbjct: 819 KILQGKKVLLAEDNQMNQFLATTILEEWGVIVEVAEDGKQAIEKFS-------------- 864
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
YDLILMD QM MDG +ATR+IR+ + ++PIIA TA
Sbjct: 865 -----------ENKYDLILMDMQMPIMDGLEATRIIRQ-----QLRSTVPIIALTANAIK 908
Query: 180 DNERECFNSGMDTFLNKP-AQEHL 202
+ + C GM+ +L KP AQ+ L
Sbjct: 909 GDRQRCIEVGMNDYLPKPFAQKDL 932
>gi|424043933|ref|ZP_17781556.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-03]
gi|408888462|gb|EKM26923.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-03]
Length = 856
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + Q+I L K G + +G+ A+EA+T
Sbjct: 735 ILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAIT--------------------- 773
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+D ILMDC M MDG AT+ IRR E E + + I IIA TA V ++ + CF
Sbjct: 774 ---TGEQFDAILMDCMMPVMDGLTATKEIRRWEKEVGSDK-ITIIALTASVLEEDIQNCF 829
Query: 187 NSGMDTFLNKPAQEHLL 203
+GMD +L KP + + L
Sbjct: 830 AAGMDAYLPKPYKSNQL 846
>gi|189197037|ref|XP_001934856.1| osmolarity two-component system protein sln1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980804|gb|EDU47430.1| osmolarity two-component system protein sln1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1161
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 71/141 (50%), Gaps = 29/141 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVE-AMTLMINAAGKNHQIQNLHH 122
+ VL+ ED Q + +RMLK + VT+ KDG+ A++ M M A
Sbjct: 967 VKVLVAEDNKTNQEVVLRMLKLEDVYDVTVAKDGQEALDRVMESMERQA----------- 1015
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
Y+LI MD QM ++DG ++TR+IR ++G S PI+A TA N
Sbjct: 1016 ----------PYNLIFMDVQMPNLDGLQSTRLIR------QSGFSAPIVALTAYAEESNV 1059
Query: 183 RECFNSGMDTFLNKPAQEHLL 203
+EC SGMD FL+KP + L
Sbjct: 1060 KECLESGMDFFLSKPIRRPAL 1080
>gi|392545118|ref|ZP_10292255.1| sensor protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1107
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 23/132 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+LL ED V Q + + ML+KL V +V DG N ++NL
Sbjct: 975 ILLAEDNQVNQIVTVSMLQKLDIESVDVVSDG----------------NEALRNLR---- 1014
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
E S Y L+LMDCQM MDG AT+ IR+ +A ++ I I+A TA +E++C
Sbjct: 1015 -EYQYSEGYSLVLMDCQMPEMDGFHATKAIRKGQA-GKSNTDITIVALTANAMVGDEKKC 1072
Query: 186 FNSGMDTFLNKP 197
+GM+ +L+KP
Sbjct: 1073 LEAGMNDYLSKP 1084
>gi|392551218|ref|ZP_10298355.1| GGDEF domain protein [Pseudoalteromonas spongiae UST010723-006]
Length = 1380
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 30/157 (19%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
+ + + VLLVED V Q + + +LK LG + +G A+ A+ M
Sbjct: 1243 DTTIFNDVHVLLVEDNPVNQMVALSVLKNLGVTADVASNGHDALAALKAM---------- 1292
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
Y I+MDCQM MDG + T I+ EA ++ +IPIIA TA
Sbjct: 1293 -----------DKPSDYAAIIMDCQMPEMDGYETTSKIKSGEA-GKSAANIPIIAMTANA 1340
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+E++C +GMD ++ KP ++ ET+ RK
Sbjct: 1341 MQGDEQKCLAAGMDDYMTKPIEK--------ETVYRK 1369
>gi|410611631|ref|ZP_11322726.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola psychrophila 170]
gi|410168834|dbj|GAC36615.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola psychrophila 170]
Length = 826
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 32/156 (20%)
Query: 49 VNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
VN+D + E K L G +L+V+D + + I ML+ G V ++G+ A+E
Sbjct: 692 VNEDKATIPEAK-LSGY-ILVVDDSDINRIIAQFMLEGFGLTVATAENGQQALE------ 743
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA-EAETGQS 167
+ H +D+ILMDC+M MDG +A+R IR +++ EA
Sbjct: 744 ----------------QFQKHT---FDMILMDCEMPIMDGYEASRTIRDMQSGEARA--- 781
Query: 168 IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
PI+A TA +N ++C +GMD FL+KP E L
Sbjct: 782 -PIVALTANAYQENRKKCEQAGMDDFLSKPIMEEAL 816
>gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
subsp. patens]
gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
subsp. patens]
Length = 725
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 70/151 (46%), Gaps = 44/151 (29%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
S+LL ED V + + MLKKLG + +G A++A+ GK
Sbjct: 586 SLLLAEDNKVNVMVALSMLKKLGLSADVACNGMEAIKAL------QGK------------ 627
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE-------------------AEAETGQ 166
HYDL+LMD M +DG + TR IRR E + AE +
Sbjct: 628 -------HYDLVLMDICMPVLDGLEVTRRIRRYEKLGYWDDESTLKPSGRNPDSTAEKVK 680
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKP 197
IPIIA TA +D E++C +GMD+F+ KP
Sbjct: 681 RIPIIAMTANALSDCEKQCSATGMDSFMTKP 711
>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1199
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED A Q + +L+KLG V L +G+ A+E +
Sbjct: 946 LLLVEDNATNQLVARTILEKLGHTVVLAGNGKEALELL---------------------- 983
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H P DL+LMDCQM MDG +ATR IR EA E + +P++A TA A++
Sbjct: 984 --HMIP-VDLVLMDCQMPVMDGFEATRRIRAGEA-GEQNRLLPVLAMTAHAFAEDRERSR 1039
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
+GMD +L KP Q L+ A+ R
Sbjct: 1040 AAGMDDYLTKPVQLTTLSKAVTTWQGR 1066
>gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
gi|146272574|dbj|BAF58323.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
Length = 2071
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 27/133 (20%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED A+ Q++ L+KLG + +G AVEA +
Sbjct: 1808 ILVAEDFAINQKLIQAQLRKLGLAADVAGNGREAVEAFS--------------------- 1846
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
NS Y L+LMDC+M MDG +ATR IR L EA G+ PIIA TA +C
Sbjct: 1847 --RNS--YALVLMDCRMPVMDGFEATRAIRSL--EALRGRRTPIIATTAAAMPGEREKCL 1900
Query: 187 NSGMDTFLNKPAQ 199
++GMD +L KP +
Sbjct: 1901 SAGMDDYLTKPVR 1913
>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
Length = 1045
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 22/142 (15%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED +V Q + +LKK G + DG A++ + +
Sbjct: 709 VLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTL---------------------I 747
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
++ Y LILMDCQM +DG KAT IR+ +A E ++IPIIA TA + +C
Sbjct: 748 QSELDQPYTLILMDCQMPVLDGYKATAKIRQGDA-GERYKNIPIIAMTANAMKGDREKCL 806
Query: 187 NSGMDTFLNKPAQEHLLAAAIV 208
SGM+ ++ KP +L A+V
Sbjct: 807 QSGMNDYVPKPIDVGVLQKALV 828
>gi|388546627|ref|ZP_10149901.1| putative two-component system sensor kinase [Pseudomonas sp. M47T1]
gi|388275375|gb|EIK94963.1| putative two-component system sensor kinase [Pseudomonas sp. M47T1]
Length = 632
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 31/161 (19%)
Query: 37 IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96
IP A ++ P+ + G D + G VLLVED V Q + ML+ LG V +V D
Sbjct: 487 IPLALSQRATAPLREARPGSDGQGA--GKHVLLVEDNPVNQTVIDAMLRSLGFVVCVVGD 544
Query: 97 GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR 156
G A+ +T P +DL+LMDC++ +DG +ATR IR
Sbjct: 545 GAQAIHEVT------------------------RQP-FDLVLMDCRLPIVDGYEATRRIR 579
Query: 157 RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+L A+ +PIIA TA + C ++GM+ +L KP
Sbjct: 580 QLPEHAD----LPIIALTANALLGDREACLSAGMNDYLAKP 616
>gi|367477236|ref|ZP_09476593.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. ORS 285]
gi|365270448|emb|CCD89061.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. ORS 285]
Length = 850
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+V+D + + +MLK DG AV A +
Sbjct: 585 LRVLVVDDNPTNRLVATKMLKDFDIQTDTACDGAEAVTAASRF----------------- 627
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDLILMD +M MDG +ATR IR A E ++PIIAFTA ++ R
Sbjct: 628 --------NYDLILMDVRMPEMDGFQATRTIR---ARGERRSNVPIIAFTANAFMEDIRA 676
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ F+ KPA++ L AI+ +
Sbjct: 677 CREAGMNDFVVKPARKKALVEAILRVL 703
>gi|417321705|ref|ZP_12108239.1| putative two-component sensor [Vibrio parahaemolyticus 10329]
gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329]
Length = 632
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 28/132 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+VED V QR+ +L++LG V++ GE A++ + H
Sbjct: 505 VLIVEDTEVNQRVVRIILEQLGLKVSVASHGEEALQLC--------REHA---------- 546
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLI MDCQM MDG AT IR + E G +PIIA TA V ++++ CF
Sbjct: 547 -------FDLIFMDCQMPVMDGFIATEQIRDMN---EWGAHVPIIALTANVVKEDQQRCF 596
Query: 187 NSGMDTFLNKPA 198
+GM+ F+ KP
Sbjct: 597 EAGMNEFVAKPV 608
>gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway
5J108-111]
gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway
5J108-111]
Length = 683
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED + QRI ML+++G V + G+ A+E M
Sbjct: 565 MNVLVVEDNLINQRISKIMLEQVGCQVDIAGCGKDAIEKM-------------------- 604
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++ MD + MDG + T+ IR E GQ +PI+A TA V A + +
Sbjct: 605 ------KKHYDMVFMDIGLPDMDGFETTQCIRHNET---PGQRVPIVAMTAHVFAQDRKR 655
Query: 185 CFNSGMDTFLNKP 197
CF+ GMD + KP
Sbjct: 656 CFDVGMDEVMAKP 668
>gi|408375284|ref|ZP_11172957.1| sensor histidine kinase/response regulator [Alcanivorax
hongdengensis A-11-3]
gi|407764879|gb|EKF73343.1| sensor histidine kinase/response regulator [Alcanivorax
hongdengensis A-11-3]
Length = 928
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 33/210 (15%)
Query: 1 MSIGKEQAETTSHPEKLELEHGLQLEFKPV--PVTNNIIPQAEGSSSSCPVNDDVTGVDE 58
M G A T + + + L KPV P ++ + G P DD V +
Sbjct: 729 MLTGIHNAPTATQARNVGIHRVLS---KPVSAPRLRQVLAEELGQKPLSPSRDDSLPVTQ 785
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
L +L+ ED + Q++ ML KLG + +G A
Sbjct: 786 PD--PSLKLLVAEDHHLSQKVIRGMLGKLGLSADIAANGREA------------------ 825
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
LE + YDLILMDC+M MDG +ATR IR+ E +++ ++PI+A TA +
Sbjct: 826 -------LEMASRQRYDLILMDCEMPEMDGFEATRRIRQYE-QSQGLPAVPIVALTAHIL 877
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
++ +GM+ + KP + +L A+V
Sbjct: 878 REHRERSLAAGMNAHIAKPVELSVLRDALV 907
>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
Length = 998
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 34/172 (19%)
Query: 34 NNIIPQA-EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
+++P A E + PVN D + +L LVED + Q++ + L ++G V
Sbjct: 719 QSVVPVAVERRDAPAPVNVARERSDHRLLL------LVEDNLINQKLAVHQLTQMGYAVD 772
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+ +G+ A++A+ + Y L+LMDCQM MDG +AT
Sbjct: 773 VASNGQEALDALATV-------------------------PYALVLMDCQMPVMDGFEAT 807
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
R IR ++E G I I+A TA + C GMD +L+KP + LLA
Sbjct: 808 RRIR--QSEQAGGGHIQIVAMTANAMQGDRERCLEVGMDDYLSKPIRRELLA 857
>gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
Length = 683
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
++VL+VED + QRI ML+++G V + G+ A+E M
Sbjct: 565 MNVLVVEDNLINQRISKIMLEQVGCQVDIAGCGKDAIEKM-------------------- 604
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
HYD++ MD + MDG + T+ IR E GQ +PI+A TA V A + +
Sbjct: 605 ------KKHYDMVFMDIGLPDMDGFETTQCIRHNET---PGQRVPIVAMTAHVFAQDRKR 655
Query: 185 CFNSGMDTFLNKP 197
CF+ GMD + KP
Sbjct: 656 CFDVGMDEVMAKP 668
>gi|78355591|ref|YP_387040.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
gi|78217996|gb|ABB37345.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
Length = 981
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 23/142 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+G+ LLVED + + + + ML+ +G V + GE A+ +
Sbjct: 649 FDGMRALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEALAVL----------------- 691
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
++E + P +D++ MD QM MDG +ATRVIR + + IPIIA TA V +++
Sbjct: 692 --DDVEPPSGPGFDVVFMDIQMPVMDGIEATRVIR----QHPRWRHIPIIAMTAHVMSED 745
Query: 182 ERECFNSGMDTFLNKPAQEHLL 203
+ +GM+ ++ KP +L
Sbjct: 746 RDKALEAGMNDYVTKPVDRMML 767
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED + + RML++LG ++DG A E +
Sbjct: 516 VLLVEDNESNRLVMTRMLERLGYDCDALQDGYTAYERL---------------------- 553
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ YDLIL+D ++ +DG + V+ +L AE + P+ TA
Sbjct: 554 -KRQAALYDLILLDWRLPGVDGLE---VLEKLRAEKQPLP--PVFMMTAFGREAELERAE 607
Query: 187 NSGMDTFLNKPAQEHLLAAAI 207
G+ +FL+KP + L+ AI
Sbjct: 608 ELGVASFLSKPVKLSSLSDAI 628
>gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
Length = 858
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED+ V Q I L+ G VTL +G A
Sbjct: 735 GAKILLVEDEPVNQAIAKEFLQGAGLNVTLANNGRKA----------------------- 771
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
LE S +DLILMD QM MDG +ATR IR L +E +PIIA TA ++
Sbjct: 772 --LELAESRAFDLILMDMQMPVMDGLQATRQIRALPGYSE----VPIIAMTANAFTEDRT 825
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+C +GM+ F+ KP + + + +++ +
Sbjct: 826 KCLLAGMNDFICKPVEPEVFFSMLLKWL 853
>gi|421168726|ref|ZP_15626796.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
gi|404528656|gb|EKA38720.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
Length = 651
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LLVED V Q + ML+ LG VTLV DG AV +
Sbjct: 514 GQEILLVEDNPVNQTVIEAMLRSLGYHVTLVADGIQAVRSA------------------- 554
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YD ILMDC++ +DG ATR IR E G+ +PIIA TA +
Sbjct: 555 ------ERQRYDAILMDCRLPVLDGYSATREIR----AQENGRRVPIIALTANALQGDRE 604
Query: 184 ECFNSGMDTFLNKP 197
C +GM+ +L KP
Sbjct: 605 NCLQAGMNDYLAKP 618
>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1233
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 25/139 (17%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K++ L++LL ED AV Q + R+L KLG VT+ +G +EA+ L N +
Sbjct: 985 KEMRRRLNLLLAEDNAVNQTLATRLLTKLGHTVTVANNG---IEAVQLWQNGS------- 1034
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+D ILMD M M+G ATR IR E + G I I+A TA
Sbjct: 1035 ---------------FDAILMDVDMPEMNGYDATRCIREQEQQLGVGAHIRIVAMTAHAM 1079
Query: 179 ADNERECFNSGMDTFLNKP 197
EC +GMD +L KP
Sbjct: 1080 QGAREECLLNGMDGYLTKP 1098
>gi|288940186|ref|YP_003442426.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288895558|gb|ADC61394.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 892
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
+V G +LLVED+ + + + + ++ L ++G A+E + + H+
Sbjct: 763 QVCAGRRLLLVEDEPINREVTLELIADLELHTDTAENGVEALEYV--------QRHR--- 811
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
YDLILMD QM M G +ATR IRRL + + PI+A TA A
Sbjct: 812 --------------YDLILMDMQMPVMGGLEATRRIRRLPMDTQP----PIVAMTANAFA 853
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
DN+ +C +GM+ FL KP + L A + +R H+
Sbjct: 854 DNQTQCLEAGMNDFLTKPVEPQQLLATLQYWFSRTEHQ 891
>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 1046
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+EK+ +GL++L+ ED + Q++ + +L KLG VTL +GE A+
Sbjct: 751 NEKRFFKGLNILVAEDNVINQKLILNVLNKLGLQVTLANNGEEAL--------------- 795
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+L +N YD+I MD QM M G AT+ I E E IPI+A TA
Sbjct: 796 --HLRQKNN--------YDMIFMDVQMPVMGGIDATKEILTYE-EKNRKHHIPIVALTAN 844
Query: 177 VTADNERECFNSGMDTFLNKP-AQEHL 202
++ + +GMD +L+KP EHL
Sbjct: 845 ALQGDKEKYIKAGMDDYLSKPLVLEHL 871
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 31/149 (20%)
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
+ +D ++ L L +LLVED + Q++G+ L+ LG + +G A+ + L
Sbjct: 1433 SAIDNRE-LASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMVAL------- 1484
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP---- 169
YD++LMDCQM +DG +ATR +RR EA G P
Sbjct: 1485 ------------------KKYDIVLMDCQMPVLDGYEATRELRRREAADAAGNMEPHQKT 1526
Query: 170 -IIAFTALVTADNERECFNSGMDTFLNKP 197
+IA TA + +C +GMD +++KP
Sbjct: 1527 VVIAMTANALKGDREKCLAAGMDDYISKP 1555
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V+ + VL G +L+ D+ ++++ +RM G V V++G MT
Sbjct: 1283 VNLETVLAGRKMLVASDKPTVRKLLVRMAVLWGMEVEEVENG-----WMT---------- 1327
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
I +L+ +L NSP YD++L+D Q+ M + RL Q + T+
Sbjct: 1328 -IASLYKAVSL---NSP-YDIVLVDIQLPEMVAGS----LERLRISEPAMQQTKWVVLTS 1378
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ NSG +L KP + H L + IA
Sbjct: 1379 TNQLAEAKRLVNSGFSGYLTKPVKAHRLFDCLANAIA 1415
>gi|302821913|ref|XP_002992617.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
gi|300139581|gb|EFJ06319.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
Length = 1096
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
+L G +L+V+D V +R+ L+K GA V V+ G A+E +
Sbjct: 972 LLTGKWILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEKL---------------- 1015
Query: 121 HHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
PH +D MD QM MDG +ATR IR E G +PI+A TA V
Sbjct: 1016 ---------EPPHKFDACFMDIQMPEMDGFEATRRIRCFEKRG--GSHVPILAMTADVIQ 1064
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
EC GMD +++KP +E L A+ +
Sbjct: 1065 ATYDECRRCGMDDYVSKPFEEKQLYRAVAK 1094
>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
Length = 944
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 30/152 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +LLVED A Q++ + +L++LG + +G A++A++
Sbjct: 669 LDILLVEDNATNQKLALLVLERLGYRADVALNGRQALQALS------------------- 709
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRR-LEAEAETGQSIPIIAFTALVTADNER 183
YD +LMD QM MDG +ATR IR+ L +A+ +IA TA +
Sbjct: 710 ------QKRYDAVLMDLQMPEMDGLEATRRIRQELPPKAQPW----VIAMTANAMDSDRE 759
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+CF++GMD FL KP + L AA++ R+S
Sbjct: 760 QCFSAGMDDFLGKPIRVEALTAALLRCQPRRS 791
>gi|67901916|ref|XP_681214.1| hypothetical protein AN7945.2 [Aspergillus nidulans FGSC A4]
gi|40740409|gb|EAA59599.1| hypothetical protein AN7945.2 [Aspergillus nidulans FGSC A4]
Length = 676
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K+++G VL VED + Q++ R L+ G VT +G+ EA+ L
Sbjct: 549 KLVKGPRVLFVEDNVINQKVVCRKLRVSGFEVTTANNGQ---EALGLW------------ 593
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+S +D ILMD +M MDG ATR IR +E E G IPI+ TA V
Sbjct: 594 ----------DSDKFDCILMDQEMPVMDGNTATREIRAMEKE--KGSHIPILGVTANVRQ 641
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAI 207
D + + N+GMD ++KP + H L I
Sbjct: 642 DQQADMLNAGMDGIIHKPYKMHELCEKI 669
>gi|428212990|ref|YP_007086134.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428001371|gb|AFY82214.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1811
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 37/167 (22%)
Query: 41 EGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
E S S PV + V + L +LLVED + Q++ + LK LG V++G+ A
Sbjct: 1535 EDSGRSSPVLEPV---------KNLKILLVEDTPINQKVILNQLKVLGYAADCVENGQQA 1585
Query: 101 VEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA 160
++ + YD++LMDC M +DG K T+V+R E
Sbjct: 1586 LDCLA-------------------------EQSYDIVLMDCLMPVLDGYKTTKVVRDREG 1620
Query: 161 EAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ + PIIA TA + +C +GMD +L+KP LAA +
Sbjct: 1621 ---SSRHTPIIAMTANAMKGDREKCLEAGMDDYLSKPVDLDQLAAIL 1664
>gi|358381468|gb|EHK19143.1| hypothetical protein TRIVIDRAFT_50684 [Trichoderma virens Gv29-8]
Length = 1309
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 25/167 (14%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+VED V Q+I R + KLG V+ +G+ EA+ MI A+ +++
Sbjct: 1046 LHILVVEDNPVNQKIATRTIGKLGFQVSATWNGK---EALDYMIGASKGQNKMP------ 1096
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
D+ILMD QM +DG K T ++R Q++PI+A TA + +
Sbjct: 1097 ----------DIILMDVQMPIIDGYKCTHLLRHHLPYKTLVQNVPIVAMTASAIHGDREK 1146
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS------CDEQAE 225
C +GMD +L KP +L ++ + H S C E E
Sbjct: 1147 CTRAGMDDYLPKPVTMKVLEKMLIRWSLTRRHPQSEPPASDCSEMGE 1193
>gi|168047043|ref|XP_001775981.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162672639|gb|EDQ59173.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 436
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 18 ELEHGLQLEFKPVPVTNNIIPQAEGSSSSCP--VNDDVT---GVDEKKVLEG---LSVLL 69
EL G +F NN IP+ EGS+ + P + D++ + +K+L+ L +LL
Sbjct: 253 ELGKGSTFQFCLPLSLNNPIPK-EGSAEASPKVRSPDLSRESSTEMEKLLDSKLHLKILL 311
Query: 70 VEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETH 129
ED A+ Q++ R L+K G V +V DG+ A++ + H
Sbjct: 312 AEDNAINQKVASRQLEKHGHIVRIVGDGQQALDVIC---------------------AQH 350
Query: 130 NSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNS 188
+ +DL+LMD QM MDG AT IR+ AE E G S +PI+ TA + C
Sbjct: 351 DE--FDLVLMDVQMPIMDGLCATEKIRK--AELECGWSRVPILGLTAHAIQGYQDTCLTH 406
Query: 189 GMDTFLNKPAQEHLLAAAIVETIAR 213
GMD +L KP L I + R
Sbjct: 407 GMDGYLGKPFDIQQLLKTIGHILPR 431
>gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio
vulgaris str. Hildenborough]
gi|387154260|ref|YP_005703196.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
Length = 1000
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 32/159 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GL++LLVED V Q +L+K GA VT+ +G+ + A
Sbjct: 869 LHGLNLLLVEDDPVNQLATAGLLRKSGARVTIAANGQEGLAAAL---------------- 912
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR---RLEAEAETGQSIPIIAFTALVT 178
S +D I+MD QM MDG +AT+ +R R A A T P++A TA
Sbjct: 913 ---------SDSFDCIIMDVQMPIMDGIEATQRLRSDGRYTARAAT----PVVAMTAHAL 959
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
+ C SGMDT++ KPA LA AI +I ++ +
Sbjct: 960 EGDREMCLASGMDTYVTKPATLESLAQAIASSIRLRTRR 998
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 32/160 (20%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S + P ++ + +D + L L +LLVED + Q++G+ L+ LG + +G A+
Sbjct: 1424 SQANPTSNRASAIDNRD-LASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALSM 1482
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA--- 160
+ L YD++LMDCQM +DG +AT +R LEA
Sbjct: 1483 VAL-------------------------KKYDIVLMDCQMPVLDGYEATLQLRGLEAADL 1517
Query: 161 ---EAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ E+ Q +IA TA + +C +GMD +++KP
Sbjct: 1518 AAGKMESHQKTVVIAMTANALKGDREKCLAAGMDDYISKP 1557
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 42 GSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAV 101
G ++C VN + VL G +L+ D+ ++++ +RM G V V++G
Sbjct: 1277 GVGTACEVNLET-------VLAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENG---- 1325
Query: 102 EAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE 161
MT I +L+ +L NSP YD++L+D Q+ M + RL
Sbjct: 1326 -WMT-----------IASLYKAVSL---NSP-YDIVLVDIQLPEMVAGS----LERLRIS 1365
Query: 162 AETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
Q + T++ + +SG +L KP + H L + IA
Sbjct: 1366 EPAMQQTKWVVLTSMTQLAEAKRLVDSGFSGYLTKPVKAHRLFDCLANAIA 1416
>gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
Length = 1000
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 32/159 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GL++LLVED V Q +L+K GA VT+ +G+ + A
Sbjct: 869 LHGLNLLLVEDDPVNQLATAGLLRKSGARVTIAANGQEGLAAAL---------------- 912
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIR---RLEAEAETGQSIPIIAFTALVT 178
S +D I+MD QM MDG +AT+ +R R A A T P++A TA
Sbjct: 913 ---------SDSFDCIIMDVQMPIMDGIEATQRLRSDGRYTARAAT----PVVAMTAHAL 959
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
+ C SGMDT++ KPA LA AI +I ++ +
Sbjct: 960 EGDREMCLASGMDTYVTKPATLESLAQAIASSIRLRTRR 998
>gi|33466070|gb|AAQ19474.1| histidine kinase G2 [Emericella nidulans]
gi|259480694|tpe|CBF73574.1| TPA: Histidine kinase G2 [Source:UniProtKB/TrEMBL;Acc:Q6WJ26]
[Aspergillus nidulans FGSC A4]
Length = 659
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
K+++G VL VED + Q++ R L+ G VT +G+ EA+ L
Sbjct: 532 KLVKGPRVLFVEDNVINQKVVCRKLRVSGFEVTTANNGQ---EALGLW------------ 576
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
+S +D ILMD +M MDG ATR IR +E E G IPI+ TA V
Sbjct: 577 ----------DSDKFDCILMDQEMPVMDGNTATREIRAMEKE--KGSHIPILGVTANVRQ 624
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAI 207
D + + N+GMD ++KP + H L I
Sbjct: 625 DQQADMLNAGMDGIIHKPYKMHELCEKI 652
>gi|365881914|ref|ZP_09421197.1| putative Histidine kinase [Bradyrhizobium sp. ORS 375]
gi|365289840|emb|CCD93728.1| putative Histidine kinase [Bradyrhizobium sp. ORS 375]
Length = 846
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
E L +L+ ED + + + R+L + G +V +G AVEA+
Sbjct: 705 EALEILVAEDNDINRNLIARLLARRGYRADMVDNGRDAVEAV------------------ 746
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YDL+LMD QM MDG ATR+IR L +A +P+IA TA A+
Sbjct: 747 -------QRKRYDLVLMDMQMPKMDGVTATRMIRDLGNQA---ADVPVIALTANALANQR 796
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAE 225
C +GMD FL KP + L AI H S E A+
Sbjct: 797 ALCVAAGMDDFLTKPIRPDRLYEAIAYWGRHGRHATSRRETAD 839
>gi|146343763|ref|YP_001208811.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278]
gi|146196569|emb|CAL80596.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. ORS 278]
Length = 850
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+V+D + + +MLK DG AV A +
Sbjct: 585 LRVLVVDDNPTNRLVATKMLKDFDIQTDTACDGAEAVTAASRF----------------- 627
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDLILMD +M MDG +ATR IR A E ++PIIAFTA ++ R
Sbjct: 628 --------NYDLILMDVRMPEMDGFQATRTIR---ARGERRSNVPIIAFTANAFMEDIRA 676
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ F+ KPA++ L AI+ +
Sbjct: 677 CREAGMNDFVVKPARKKALVEAILRVL 703
>gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava]
Length = 896
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL V+D + +L+ +GA V V G AAV A+
Sbjct: 648 VLCVDDNPANLLLVQTLLEDMGAEVVAVDGGYAAVSAV---------------------- 685
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMD QM MDGC+AT IR E E S+PI+A TA A+ +R
Sbjct: 686 ---QQEAFDLVLMDVQMPGMDGCQATEAIRAWETE-RNQTSLPIVALTAHAMANEKRSLL 741
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
SGMD +L KP E LA +++
Sbjct: 742 QSGMDDYLTKPISERQLAQVVLK 764
>gi|302768761|ref|XP_002967800.1| cytokinin receptor [Selaginella moellendorffii]
gi|300164538|gb|EFJ31147.1| cytokinin receptor [Selaginella moellendorffii]
Length = 965
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
+L G +L+V+D V +R+ L+K GA V V+ G A+E +
Sbjct: 841 LLTGKWILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEKL---------------- 884
Query: 121 HHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
PH +D MD QM MDG +ATR IR E G +PI+A TA V
Sbjct: 885 ---------EPPHKFDACFMDIQMPEMDGFEATRRIRCFEKRG--GSHVPILAMTADVIQ 933
Query: 180 DNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
EC GMD +++KP +E L A+ +
Sbjct: 934 ATYDECRRCGMDDYVSKPFEEKQLYRAVAK 963
>gi|365879832|ref|ZP_09419233.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. ORS 375]
gi|365292191|emb|CCD91764.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. ORS 375]
Length = 850
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+V+D + + +MLK DG AV A +
Sbjct: 585 LRVLVVDDNPTNRLVATKMLKDFEIQTDTACDGAEAVTAASRF----------------- 627
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDLILMD +M MDG +ATR IR A E ++PIIAFTA ++ R
Sbjct: 628 --------NYDLILMDVRMPEMDGFQATRTIR---ARGERRSNVPIIAFTANAFMEDIRA 676
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ F+ KPA++ L AI+ +
Sbjct: 677 CREAGMNDFVVKPARKKALVEAILRVL 703
>gi|344344378|ref|ZP_08775241.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
gi|343804048|gb|EGV21951.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
Length = 1289
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 29/161 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VLLVED V Q + +L+ +G V + DG EA+ L +
Sbjct: 912 LRGARVLLVEDNRVNQDVAREILEWVGVRVEVAGDG---AEALALARESV---------- 958
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+DL+LMD QM +DG +ATR +RRL A+T PI+A TA V ++
Sbjct: 959 ------------FDLVLMDIQMPVLDGLEATRRLRRLPGYADT----PILAMTANVFEED 1002
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDE 222
ER C +GM+ L KP L I + + R S + D+
Sbjct: 1003 ERRCLAAGMNGHLAKPIDPDRLYTVIADWLQRPSVAMTRDD 1043
>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
Length = 1763
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 28 KPVPVTNNI--IPQAEGSSSSCPVNDDVTGVDEKKV--LEGLSVLLVEDQAVLQRIGIRM 83
KP+ + + I A G PV +D +K+ L+G +LLVED + Q +
Sbjct: 1379 KPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEF 1438
Query: 84 LKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143
L+++G +++ +G+ A+E + +DL+LMDCQM
Sbjct: 1439 LEQVGVVLSIADNGQIALEKL-------------------------GQQSFDLVLMDCQM 1473
Query: 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
MDG +ATR +R+L AE +P++A TA A ++ C +GM+ + KP + +L
Sbjct: 1474 PVMDGYQATRELRKLPGLAE----LPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGIL 1529
Query: 204 AAAIVETI 211
+++ +
Sbjct: 1530 YQTLLQYL 1537
>gi|375104891|ref|ZP_09751152.1| PAS domain S-box [Burkholderiales bacterium JOSHI_001]
gi|374665622|gb|EHR70407.1| PAS domain S-box [Burkholderiales bacterium JOSHI_001]
Length = 1041
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 31/136 (22%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL VLL ED AV Q + + +L+ G V + +DGE AV
Sbjct: 913 GLRVLLAEDNAVNQEVAVELLRMAGMLVDVAEDGEQAV---------------------- 950
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
++ YDL+LMD QM MDG +ATR +R E G ++PI+A TA D+
Sbjct: 951 ---RMASNQRYDLVLMDVQMPRMDGLQATRRLR------ELGLTLPILAMTANAFNDDRT 1001
Query: 184 ECFNSGMDTFLNKPAQ 199
C +GM+ + KP +
Sbjct: 1002 ACLAAGMNDHVAKPVE 1017
>gi|396461515|ref|XP_003835369.1| hypothetical protein LEMA_P047100.1 [Leptosphaeria maculans JN3]
gi|312211920|emb|CBX92004.1| hypothetical protein LEMA_P047100.1 [Leptosphaeria maculans JN3]
Length = 934
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 22/133 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + +++ L+KLG VT V DG+ A++ +
Sbjct: 802 ILLVEDNPINRKVISLALQKLGYIVTAVCDGQQALDYL-------------------CTS 842
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA-EAETGQSIPIIAFTALVTADNEREC 185
H PH +LMDC M ++DG +ATR IR E +E+ + +PIIA TA + +C
Sbjct: 843 SPHPPPH--ALLMDCMMPNVDGYQATRRIRTDETLFSESVRRLPIIALTASAIKGDREKC 900
Query: 186 FNSGMDTFLNKPA 198
F +G D FL KPA
Sbjct: 901 FEAGFDDFLTKPA 913
>gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
Length = 919
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L V+D A + +L+ LGA V + +G AAV A+
Sbjct: 671 ILCVDDNAANLLLVQTLLEDLGADVLALDNGHAAVRAV---------------------- 708
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S H+DL+LMD QM MDG T IR E ++G +PI+A TA A+ +R
Sbjct: 709 ---QSEHFDLVLMDVQMPGMDGRACTEQIRLWE-NTQSGSPLPIVALTAHAMANEKRALL 764
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
+SGMD +L KP E LA +++
Sbjct: 765 HSGMDDYLTKPISERQLAQVVMK 787
>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
Length = 1513
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 26/140 (18%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LLVED V +++ + ML++LG + +DG A+ A L G
Sbjct: 1252 LLVEDNEVNRQVALGMLRRLGLRADVAEDGLGALRA----------------LEEGD--- 1292
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
YDL+LMD QM MDG + TR IR + A + +PI+A TA + C
Sbjct: 1293 ------YDLVLMDVQMPGMDGVETTRAIRAPGSRARNPR-VPIVAMTAHAMQGDRERCLE 1345
Query: 188 SGMDTFLNKPAQEHLLAAAI 207
+GMD FL+KP LA ++
Sbjct: 1346 AGMDGFLSKPLDFSTLAESL 1365
>gi|363751407|ref|XP_003645920.1| hypothetical protein Ecym_4020 [Eremothecium cymbalariae DBVPG#7215]
gi|356889555|gb|AET39103.1| hypothetical protein Ecym_4020 [Eremothecium cymbalariae DBVPG#7215]
Length = 1125
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 70/146 (47%), Gaps = 26/146 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
VL+ ED V Q + RML+ G + L DGE A+E ++ NL
Sbjct: 978 FKVLVAEDNNVNQEVIKRMLQLEGIYDIELACDGEEALE-------------KVANL--- 1021
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
T+ HY+++ MD QM MDG ATR IR+ E + PI+A TA N +
Sbjct: 1022 ----TNQYDHYNIVFMDVQMPKMDGLIATRNIRK-----ELNYTYPIVALTAFADDSNIK 1072
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVE 209
C SGMD FL+KP + L ++E
Sbjct: 1073 VCLESGMDGFLSKPIKREKLRKILLE 1098
>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1009
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 26/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + Q++ ++ K+G + + +G+ A++A+
Sbjct: 750 ILLVEDNIINQQVAKAVMAKIGINIHVAANGQEALDAL---------------------- 787
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S YDL++MD QM MDG ATR IR +++ A Q IPIIA TA V ++ EC
Sbjct: 788 ---GSIPYDLVVMDIQMPVMDGLTATRKIRAVDSTALNPQ-IPIIAMTARVMKGDQAECL 843
Query: 187 NSGMDTFLNKP 197
+GM+ +L KP
Sbjct: 844 AAGMNDYLTKP 854
>gi|402078664|gb|EJT73929.1| hypothetical protein GGTG_07783 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1479
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+VED A+ Q I + +K+LG V+ V +G+ A+E ++ G
Sbjct: 1136 IHVLVVEDNAINQEIATKTIKRLGFTVSAVWNGKEALE-------------YLEKAQDGQ 1182
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
L D+ILMD QM +DG + T V+R +++PI+A TA + +
Sbjct: 1183 ALRP------DIILMDVQMPVIDGYRCTHVLRHHTPYKAYVKNVPIVAMTASAIQGDREK 1236
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
C +GMD +L KP + +L +V K +
Sbjct: 1237 CRKAGMDDYLAKPVRSQILEKMLVRWAMSKRKR 1269
>gi|358638317|dbj|BAL25614.1| putative hybrid sensor and regulator protein [Azoarcus sp. KH32C]
Length = 1068
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
LS+LLVED + Q++ + + G VTL +G AV+ M
Sbjct: 818 LSILLVEDHPINQKLAAELFEMWGHRVTLAANGHEAVDLFPTM----------------- 860
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
H+D++ MD QM M G +ATR+IR A G+ PIIA TA +++ +
Sbjct: 861 --------HWDIVFMDMQMPVMGGVEATRLIR---ASEPPGRRTPIIAMTASAMSEDRKR 909
Query: 185 CFNSGMDTFLNKP 197
C +GMD + KP
Sbjct: 910 CLEAGMDDHIAKP 922
>gi|323138790|ref|ZP_08073854.1| histidine kinase [Methylocystis sp. ATCC 49242]
gi|322395938|gb|EFX98475.1| histidine kinase [Methylocystis sp. ATCC 49242]
Length = 574
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQN 119
+ L GL+ L+ ED V I R L+KLGA VT ++G AVE + I A
Sbjct: 431 RALAGLNALVAEDNDVNALILTRHLEKLGASVTRARNGAEAVELVRAAIGDA-------- 482
Query: 120 LHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179
SP +D+I+MD M +DG +ATR IR EA A ++ PI+A TA
Sbjct: 483 -----------SPPFDVIVMDLFMPELDGREATRRIRDAEARAGAPRT-PILALTASAQE 530
Query: 180 DNERECFNSGMDTFLNKPAQEHLLA 204
++E +G+D FL KP LA
Sbjct: 531 EDESAARAAGVDAFLTKPVDFSRLA 555
>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 1023
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 37/196 (18%)
Query: 22 GLQLEFKPVPVT--NNIIPQAEGSSSSCPVNDDV--TGVDEKKVLEGLSVLLVEDQAVLQ 77
+Q+ KPV + ++ + A + PV D T D + L G +L+ ED + Q
Sbjct: 622 AIQVLAKPVTPSGLHDALAAALQGARDLPVVQDRVDTPADHGERLRGARILVAEDNEINQ 681
Query: 78 RIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137
+ +++L+ GA VTL ++G A+E + NA YDL+
Sbjct: 682 EVILQLLQATGARVTLAENGREALEQVC--ANA-----------------------YDLV 716
Query: 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
LMD QM MDG +ATR IR A AE + +PI+A TA + R+C +GM+ L KP
Sbjct: 717 LMDVQMPVMDGLEATRAIR---ARAEY-RELPILAMTANAFESDRRQCIEAGMNDHLAKP 772
Query: 198 AQEHLLAAAIVETIAR 213
+ L ET+AR
Sbjct: 773 IEPERL----TETLAR 784
>gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
Length = 865
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G +LL ED+ + Q I +L+++G V DG+ AVE T AG+
Sbjct: 742 GKRILLAEDEPINQEIAQVLLEEVGLTVDFAADGQEAVEKAT-----AGR---------- 786
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
YDLILMD QM +DG +A R IR + A T PI+A TA A+++
Sbjct: 787 ----------YDLILMDMQMPHLDGLEAARQIRLIPEYAAT----PILAMTANAFAEDKA 832
Query: 184 ECFNSGMDTFLNKP 197
CF +GMD F+ KP
Sbjct: 833 RCFMAGMDDFIAKP 846
>gi|171059849|ref|YP_001792198.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170777294|gb|ACB35433.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1087
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 30/165 (18%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S + P+++ + ++ G VLL ED + Q + +L +G V +V DG A
Sbjct: 940 SVAAPLDESEAESELRRRHAGQRVLLAEDNPINQEVARELLASVGLTVDVVADGAGA--- 996
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
L YDL+LMD QM MDG +ATR IR A
Sbjct: 997 ----------------------LAQAQEGRYDLVLMDVQMPGMDGLEATRQIR-----AR 1029
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
G +PIIA TA D+ C ++GM+ + KP LL A ++
Sbjct: 1030 MGHGLPIIAMTANAFGDDRLACLDAGMNAHIGKPVDPALLYATVL 1074
>gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB]
gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB]
Length = 794
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 31/180 (17%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
P + PV D + K G +LL ED+ + + I + +L+ +G V + +DG
Sbjct: 637 PAQVAETQFSPVTD--AEMQLKTNFAGRRILLAEDEPINREITLSLLEDVGLTVDIAEDG 694
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
+EA+ L AG N+ Y L+LMD QM MDG +ATR IRR
Sbjct: 695 ---IEALKL----AGANN------------------YALVLMDMQMPGMDGLEATRSIRR 729
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
L + + I+A TA ++++ C ++GM+ F++KP LL +++ +++ S +
Sbjct: 730 LPVSGD----VLILAMTANAFVEDKQRCLDAGMNDFISKPVDPKLLFNKLLKWLSQGSPR 785
>gi|406895703|gb|EKD40199.1| hypothetical protein ACD_75C00144G0008 [uncultured bacterium]
Length = 564
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 27/155 (17%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VL+G VLL ED+ + + + +L +LG VT V +G AV+ +GK
Sbjct: 321 VLKGAKVLLAEDEHINRVLIETILTQLGVDVTSVDNGREAVKEA-----CSGK------- 368
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
Y L+LMD QM MDG +ATRVIR+ E + G + IIA TA
Sbjct: 369 -------------YQLVLMDVQMEEMDGLEATRVIRK--HERKQGGHLDIIALTAQAMPG 413
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ +C +GMD +L KP + + L + + + R++
Sbjct: 414 DREKCLQAGMDDYLPKPLERNQLIEVLAKFLTRRA 448
>gi|350553739|ref|ZP_08922902.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349790034|gb|EGZ43960.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 918
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 26/133 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED V Q++ + ML+KLG T V G+AA++ ++
Sbjct: 786 VRILLVEDNVVNQQVALGMLRKLGLQATAVNHGQAALDHLS------------------- 826
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDLILMD QM MDG AT+ IR +A + IPIIA TA ++
Sbjct: 827 ------QADYDLILMDVQMPVMDGITATQRIRAASGDAFDPR-IPIIAMTAHAMPSDKEA 879
Query: 185 CFNSGMDTFLNKP 197
C +GM+ +++KP
Sbjct: 880 CLAAGMNDYVSKP 892
>gi|333923713|ref|YP_004497293.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333749274|gb|AEF94381.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 1274
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 31/147 (21%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VLLVED QR+ +L G VTL ++G+ A+E +
Sbjct: 1054 NVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEML--------------------- 1092
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNERE 184
N ++D++LMD QM MDG + TRVIR E +S+PIIA TA + DNE+
Sbjct: 1093 ----NQSNFDIVLMDMQMPVMDGYETTRVIR----SDERYKSLPIIALTAHAMKGDNEK- 1143
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +G D +L KP + +L I + I
Sbjct: 1144 CLAAGCDDYLAKPVKRDILIKTIKKYI 1170
>gi|365889192|ref|ZP_09427904.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. STM 3809]
gi|365335076|emb|CCE00435.1| putative sensor histidine kinase with a response regulator receiver
domain and a phosphotransferase (HPt) domain
[Bradyrhizobium sp. STM 3809]
Length = 850
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+V+D + + +MLK DG AV A +
Sbjct: 585 LRVLVVDDNPTNRLVATKMLKDFEIQTDTACDGTEAVTAASRF----------------- 627
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDLILMD +M MDG +ATR IR A E ++PIIAFTA ++ R
Sbjct: 628 --------NYDLILMDVRMPEMDGFQATRTIR---ARGERRSNVPIIAFTANAFMEDIRA 676
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ F+ KPA++ L AI+ +
Sbjct: 677 CREAGMNDFVVKPARKKALVEAILRVL 703
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 24/199 (12%)
Query: 5 KEQAETTSHPEKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEG 64
K+ T P+ + + L K +P N + + ++ +C + + G ++ E
Sbjct: 911 KQNGFTAYFPKPMTTKDIFNLLTKCLPERNTLHSE---NTQTCTITEKPLGPNDIVWRED 967
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED + Q + LKK+G V + A + L +
Sbjct: 968 IRILLAEDNQINQIVAATTLKKMGISVVDI---------------ATNGKEVLDYLDQKN 1012
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+E Y LILMDCQM MDG +AT +IR EA + +I IIA TA ++ +
Sbjct: 1013 TIEP-----YSLILMDCQMPVMDGYQATTLIRNNEAR-DKANAITIIAMTANAMTGDKTK 1066
Query: 185 CFNSGMDTFLNKPAQEHLL 203
C +SGMD +++KP + +L
Sbjct: 1067 CLDSGMDDYISKPIAQDIL 1085
>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
Length = 1060
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L +L+V+D V +R+ LKK GA V + G+ A+ + +
Sbjct: 919 KSLLTEKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 966
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E EA+ ++ PI+A
Sbjct: 967 -------------PHNFDACFMDIQMPQMDGFEATRQIRMMEIEAKEKTNLEWHLPILAM 1013
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1014 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1051
>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
palustris TIE-1]
gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
palustris TIE-1]
Length = 636
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 48 PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
PV D + + E ++L+ ED + + +L +LG +V DG AVEA
Sbjct: 492 PVQDASSAITH----EAFAILVAEDNDINALLIRALLHRLGHHAEIVGDGRRAVEAWGAA 547
Query: 108 INAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS 167
N +P +DL+LMD QM +DG A R IR LEAE
Sbjct: 548 DNT-------------------GTP-FDLVLMDVQMPILDGLAAARQIRTLEAE-RARSR 586
Query: 168 IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA 205
+PI+A TA A++ C SGMD FL KP LAA
Sbjct: 587 VPILALTANTLAEDREACLESGMDGFLVKPIDPDRLAA 624
>gi|440681989|ref|YP_007156784.1| integral membrane sensor hybrid histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428679108|gb|AFZ57874.1| integral membrane sensor hybrid histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 756
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED V QR+ + LKK+G + +G +E
Sbjct: 639 IKILLAEDNKVNQRVALLYLKKIGYNADIANNG---IEV--------------------- 674
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIAFTALVTADNER 183
LE YD+ILMD QM MDG ATR+IR ++ + P IIA TA ++
Sbjct: 675 -LEILEKQFYDVILMDMQMPEMDGITATRIIR------QSSKPQPWIIAITANALEEDRN 727
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211
CFN+GM+ F+ KP L AAI +++
Sbjct: 728 ACFNAGMNDFITKPILPGELTAAIKKSV 755
>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
Length = 1274
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 31/147 (21%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+VLLVED QR+ +L G VTL ++G+ A+E +
Sbjct: 1054 NVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEML--------------------- 1092
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNERE 184
N ++D++LMD QM MDG + TRVIR E +S+PIIA TA + DNE+
Sbjct: 1093 ----NQSNFDIVLMDMQMPVMDGYETTRVIR----SDERYKSLPIIALTAHAMKGDNEK- 1143
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +G D +L KP + +L I + I
Sbjct: 1144 CLAAGCDDYLAKPVKRDILIKTIKKYI 1170
>gi|429213361|ref|ZP_19204526.1| putative sensor/response regulator hybrid [Pseudomonas sp. M1]
gi|428157843|gb|EKX04391.1| putative sensor/response regulator hybrid [Pseudomonas sp. M1]
Length = 642
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLLVED V Q + ML+ LG VTLV DG AV
Sbjct: 520 GQWVLLVEDNPVNQTVIEAMLRSLGYRVTLVGDGAQAV---------------------- 557
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
T +D ILMDC++ ++G +ATR IR L Q +PIIA TA +
Sbjct: 558 ---RTAERNEFDAILMDCRLPLLNGYEATRQIRALPGR----QQVPIIALTANALQGDRE 610
Query: 184 ECFNSGMDTFLNKP 197
C SGMD +L KP
Sbjct: 611 LCLESGMDDYLAKP 624
>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
Length = 996
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 25/139 (17%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+++ L++LLVED V Q++ + +L+K G TL +G+ EA+ + +A
Sbjct: 747 RELQRSLNILLVEDHPVNQKLALGLLEKWGHQATLANNGQ---EALAIFSESA------- 796
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+DLILMD QM M G +AT IR++E E+ + PIIA TA
Sbjct: 797 ---------------FDLILMDMQMPVMGGLEATLRIRQMELADESRRRTPIIAMTASAM 841
Query: 179 ADNERECFNSGMDTFLNKP 197
+ C GMD +L+KP
Sbjct: 842 QGDREACLGVGMDEYLSKP 860
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +L+V+D A +R+ +L L + G A++ M
Sbjct: 606 LRGRHILVVDDNATNRRVLSGLLAAWDVKTQLAESGAMALDIMRCA-------------- 651
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
ET +D I++D QM +MDG + R +R AE Q P++ ++ +
Sbjct: 652 -----ETS----FDCIILDAQMPAMDGYELARQLR-----AEHPQLPPMLMLSSSAMRGD 697
Query: 182 ERECFNSGMDTFLNKP-AQEHLLAA 205
E+ C +G+D + +KP + E LL+A
Sbjct: 698 EQRCQAAGIDAYFSKPISSEDLLSA 722
>gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS, partial
[Pseudomonas syringae pv. aesculi str. NCPPB 3681]
Length = 841
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL V+D + +L+ +GA V V+ G AAV A+
Sbjct: 669 VLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAV---------------------- 706
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMD QM MDG +AT IR EAE S+PI+A TA A+ +R
Sbjct: 707 ---QQEAFDLVLMDVQMPGMDGRQATEAIRAWEAE-RNQSSLPIVALTAHAMANEKRSLL 762
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQD 228
SGMD +L KP E LA +++ + + Q EA D
Sbjct: 763 QSGMDDYLTKPISERQLAQVVLKWTGLALRTPAPERQNEAPD 804
>gi|410620824|ref|ZP_11331682.1| hypothetical protein GPAL_0175 [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410159707|dbj|GAC27056.1| hypothetical protein GPAL_0175 [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 821
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 31/160 (19%)
Query: 44 SSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103
S C DD K L G VL+V+D + + I ML+ G V + ++G+ A++
Sbjct: 682 SVVCGYADDAVTTSAK--LLG-HVLVVDDSEINRIIAQHMLEDFGLTVAIAENGQEALDQ 738
Query: 104 MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAE 163
+ Q Q +DLILMDC+M MDG +A+R IR +++ E
Sbjct: 739 L-----------QKQT--------------FDLILMDCEMPIMDGYEASRKIRSMQSRDE 773
Query: 164 TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
PI+A TA +N ++C +GMD FL+KP +++L
Sbjct: 774 ---RTPIVALTADAFDENRKKCKEAGMDGFLSKPIMQNVL 810
>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 1052
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 73/160 (45%), Gaps = 36/160 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED V Q++ MLKK G V + +G A+E +
Sbjct: 911 VRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEIL-------------------- 950
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE------------AETGQSIPIIA 172
+ + N H LI MD QM MDG ATR IRRLE+E A T IPIIA
Sbjct: 951 -MASRNGFH--LIFMDVQMPEMDGFTATREIRRLESEHVLKPPQCTDFHASTIARIPIIA 1007
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
TA + C ++GMD ++ KP + + +IVE A
Sbjct: 1008 MTAHAMKGDREACIDAGMDDYITKPIKREGV-FSIVEKWA 1046
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G LLV+D +I LK +G + L+ G V+ + L+ +A G+
Sbjct: 748 LSGKKALLVDDNDTNLKILAAYLKPVGIRLVLLNKG---VDVLPLLESAIGEQDP----- 799
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ----SIPIIAFTALV 177
+D+ + D QM M G + R IR E+ Q S+P++A +++
Sbjct: 800 ------------FDICITDIQMPIMSGYEVARQIRLFESPVSGLQTSIRSLPLMALSSVR 847
Query: 178 TADNERECFNSGMDTFLNKPAQ--------EHLLAAAI 207
D +R C G D FL KP + E +L AA+
Sbjct: 848 GQDAKR-CREVGFDGFLGKPIRRERLYRMLERILGAAV 884
>gi|406999406|gb|EKE17052.1| hypothetical protein ACD_10C00645G0001, partial [uncultured
bacterium]
Length = 546
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 76/171 (44%), Gaps = 46/171 (26%)
Query: 18 ELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQ 77
++ HGL P+P N I P T +D + G VLL ED + Q
Sbjct: 422 KVRHGL----NPIPTLNAIAPSN-------------TELDLRHRHSGARVLLAEDNEINQ 464
Query: 78 RIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137
+ + +L +G V L +G AVE L NA YDLI
Sbjct: 465 EVALELLHDVGLKVDLANNGRQAVEKARL--NA-----------------------YDLI 499
Query: 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS 188
LMD QM MDG +ATR IRRL+A Q++PI+A TA ++++ C +
Sbjct: 500 LMDIQMPEMDGLEATRTIRRLDAR----QTLPILAMTASAFEEDKQACLEA 546
>gi|332530115|ref|ZP_08406065.1| signal transduction histidine kinase-like protein [Hylemonella
gracilis ATCC 19624]
gi|332040588|gb|EGI76964.1| signal transduction histidine kinase-like protein [Hylemonella
gracilis ATCC 19624]
Length = 814
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 64/134 (47%), Gaps = 25/134 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+ ED + Q I +++L++ G VT+ +GE AV L
Sbjct: 564 VLVAEDNEINQAIMVQLLQQAGHAVTVAHNGEQAV-----------------------GL 600
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
T YDLI MD QM +DG +ATR IR E E TGQ I+A TA V ++ C
Sbjct: 601 VTQAETPYDLIFMDMQMPVLDGLQATRRIR--EHEQSTGQRTRIVALTANVLPEDRARCL 658
Query: 187 NSGMDTFLNKPAQE 200
+GMD L KP +
Sbjct: 659 AAGMDGHLGKPIDQ 672
>gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
Length = 917
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 26/143 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL V+D + +L+ +GA V V+ G AAV+A+ L
Sbjct: 669 VLCVDDNPANLLLVQTLLEDMGAKVYAVESGYAAVDAV--------------------KL 708
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+T YDL+LMD QM MDG ++T IR+ E+E G +P++A TA A+ +R
Sbjct: 709 DT-----YDLVLMDVQMPGMDGRQSTEAIRQWESERH-GTPLPVVALTAHAMANEKRALL 762
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
SGMD +L KP E LA +++
Sbjct: 763 QSGMDDYLTKPISERQLAQVVLK 785
>gi|389879451|ref|YP_006381681.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
gi|388530841|gb|AFK56036.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
Length = 1577
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 27/159 (16%)
Query: 51 DDVTGVDEKKV--LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMI 108
DDV + + L G VLLVED A+ Q++ + +L+ G V + DG AA++ +
Sbjct: 1216 DDVRAAATQALPDLRGGRVLLVEDNALNQQVALELLEAAGLVVDVETDGRAALDRLV--- 1272
Query: 109 NAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168
AG P +DL+LMD QM MDG +ATR IR A ++
Sbjct: 1273 --AGPR----------------PPVHDLVLMDLQMPVMDGYEATRAIRATPGLA----NL 1310
Query: 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
PI+A TA A+ + C +GM+ + KP L A +
Sbjct: 1311 PIVAMTAHALAEERQRCLEAGMNDCVTKPVDPERLMAVV 1349
Score = 36.6 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L GL VL+++D + +++ ML+ + V V GEA +EA L
Sbjct: 1081 LRGLHVLVIDDNPLARQVLTGMLEGMAFRVVAVPSGEAGLEA----------------LA 1124
Query: 122 HGSNLETHNSPHYDLILMDCQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G +E P Y L+L+D ++G+ +DG AT + A PI+ TA D
Sbjct: 1125 RGREVE---DP-YSLVLLDWRLGAGLDGL-ATAGLIAQAAAEAGAPVPPIVMITAFGRDD 1179
Query: 181 NERECFNSGMDTFLNKP 197
+ +G+ L KP
Sbjct: 1180 LRQSAEAAGIRAVLGKP 1196
>gi|418022770|ref|ZP_12661756.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|353537772|gb|EHC07328.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1629
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 27/200 (13%)
Query: 15 EKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQA 74
E ++ H + F PVT+ I+ +A ++ + ++ L GL++L+VED
Sbjct: 1236 ESQQIRHVPFVNFLTKPVTSQILAEAVLNAIEGKTMEAHPQPRSQRFLAGLTILVVEDNQ 1295
Query: 75 VLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134
+ +++ +L GA V L E +E ++L++ + +
Sbjct: 1296 LNRQVIDELLSYEGANVVL---AEGGMEGVSLVLESGDL--------------------F 1332
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
D+++MD QM MDG +ATR IR E A ++PI+A TA + + +EC N+GM+ +
Sbjct: 1333 DIVIMDMQMPDMDGLEATRRIRADERFA----ALPILAMTANASQSDRQECLNAGMNDHV 1388
Query: 195 NKPAQEHLLAAAIVETIARK 214
KP LL +I+ + R+
Sbjct: 1389 GKPIDMPLLLPSILRLVGRE 1408
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VL+V+D + I ++L G V G AA+ + ++H+
Sbjct: 1138 LSGYRVLVVDDNELTTEILEKILTGFGCEVETALGGYAALAKVK-------QSHE----- 1185
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S +D++LMD +M +DG + ++R +A +T + + A+ V A++
Sbjct: 1186 --------KSTPFDVVLMDWRMPDLDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAES 1237
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ + + FL KP +LA A++ I K+
Sbjct: 1238 Q-QIRHVPFVNFLTKPVTSQILAEAVLNAIEGKT 1270
>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1102
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL +D + Q++ L K+G V + +G+ A++A+ K Q
Sbjct: 823 ILLADDNDINQKVASTNLIKMGHSVVVANNGKEALDAIV-------KGEQ---------- 865
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
YDLILMD QM MDG +ATR IRR EA A + PI+A TA + +
Sbjct: 866 -------YDLILMDGQMPIMDGMEATRKIRRFEA-AHKVKRTPIVALTAHAMTGDREKFI 917
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
+GMD +L KP Q L I K +S
Sbjct: 918 EAGMDDYLTKPLQRDALTKVIQNVATSKKGSYST 951
>gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
Length = 646
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 28/137 (20%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LLVED + Q++ ML+K+G V + +DGE A L
Sbjct: 516 LLVEDTFINQKVAKLMLEKIGLAVDIAEDGEQA-------------------------LV 550
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
Y +I MDCQM +DG + T ++R A + +PIIA TA V ++++ CF+
Sbjct: 551 LCQQQQYGIIFMDCQMPVLDGFETTEILR---ASDGWTRDVPIIALTANVVVEDKQRCFD 607
Query: 188 SGMDTFLNKPAQEHLLA 204
GM+ FL KP + ++
Sbjct: 608 VGMNDFLAKPVTQQRMS 624
>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1320
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
LE + YDL+LMD QM MDG + R+IRR EA +PI+A TALV + R C
Sbjct: 1098 LEALSRARYDLVLMDGQMPEMDGFETARLIRRGEAGV-LDPHVPIVAMTALVMPGDVRRC 1156
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQD 228
++GM+ +++KP Q H L+ I E H F D + +D
Sbjct: 1157 LDAGMNAYISKPVQPHELSRIIAE------HLFHMDSRRGPKD 1193
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 42/158 (26%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D AV +R+ LKK GA VT V G+AA+ LM+
Sbjct: 1172 ILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAAL----LMLKP---------------- 1211
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEA----ETGQ------------SIP 169
PH +D MD QM MDG KAT+ IRR+E++ ++G+ P
Sbjct: 1212 -----PHNFDACFMDLQMPEMDGFKATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTP 1266
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
I+A TA V N EC GMD ++ KP +E L +A+
Sbjct: 1267 ILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAV 1304
>gi|365895517|ref|ZP_09433626.1| putative sensor histidine kinase with a response regulator receiver
domain [Bradyrhizobium sp. STM 3843]
gi|365423753|emb|CCE06168.1| putative sensor histidine kinase with a response regulator receiver
domain [Bradyrhizobium sp. STM 3843]
Length = 729
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 28/153 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L++L+ ED Q + ++L KLG +V++G AV A+ Q Q+
Sbjct: 599 LNILIAEDNLTNQFVIKKLLDKLGHNYEIVENGVQAVAAV-----------QKQS----- 642
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDLILMD M MDG ATR+IR+L A A + + IIA TA + ++
Sbjct: 643 ---------YDLILMDMMMPEMDGLTATRMIRQLPAPA---RDLYIIALTANAASQDQLA 690
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
C +GM+ F+ KP L+AA++ + A + K
Sbjct: 691 CTEAGMNDFVTKPVTRDRLSAALLRSTAAQQRK 723
>gi|160877439|ref|YP_001556755.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378710652|ref|YP_005275546.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|160862961|gb|ABX51495.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315269641|gb|ADT96494.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
Length = 1629
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 27/200 (13%)
Query: 15 EKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQA 74
E ++ H + F PVT+ I+ +A ++ + ++ L GL++L+VED
Sbjct: 1236 ESQQIRHVPFVNFLTKPVTSQILAEAVLNAIEGKTMEAHPQPRSQRFLAGLTILVVEDNQ 1295
Query: 75 VLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134
+ +++ +L GA V L E +E ++L++ + +
Sbjct: 1296 LNRQVIDELLSYEGANVVL---AEGGMEGVSLVLESGDL--------------------F 1332
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
D+++MD QM MDG +ATR IR E A ++PI+A TA + + +EC N+GM+ +
Sbjct: 1333 DIVIMDMQMPDMDGLEATRRIRADERFA----ALPILAMTANASQSDRQECLNAGMNDHV 1388
Query: 195 NKPAQEHLLAAAIVETIARK 214
KP LL +I+ + R+
Sbjct: 1389 GKPIDMPLLLPSILRLVGRE 1408
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VL+V+D + I ++L G V G AA+ + ++H+
Sbjct: 1138 LSGYRVLVVDDNELTTEILEKILTGFGCEVETALGGYAALAKVK-------QSHE----- 1185
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S +D++LMD +M +DG + ++R +A +T + + A+ V A++
Sbjct: 1186 --------KSTPFDVVLMDWRMPDLDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAES 1237
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ + + FL KP +LA A++ I K+
Sbjct: 1238 Q-QIRHVPFVNFLTKPVTSQILAEAVLNAIEGKT 1270
>gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium
modesticaldum Ice1]
Length = 1200
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 32/205 (15%)
Query: 3 IGKEQAETTSHPEKLELEHGLQLEFKPVPV-TNNIIPQAEGS---SSSCPVNDDVTGVDE 58
+ E+A E L ++ G Q+ + VP+ T +P G+ + + P + D
Sbjct: 1005 LSTEEAVENRKAEALAVKRGAQMTTEAVPLPTTEDMPAKSGALPANRAMPPRPGDSQADL 1064
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ L+G +L+VED Q++ + +LK+LG V G AVEA+
Sbjct: 1065 SR-LDGGEILVVEDNRSNQKLLLLLLKQLGYQGYCVSTGREAVEAVA------------- 1110
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
P + L+LMDCQM MDG +A + IRR AEAE G+ +PIIA TA
Sbjct: 1111 -----------RHP-FSLVLMDCQMPDMDGYEAAQAIRR--AEAEGGRHLPIIAMTANAM 1156
Query: 179 ADNERECFNSGMDTFLNKPAQEHLL 203
N C +GMD + KP + L
Sbjct: 1157 QGNRERCLAAGMDDYTAKPIRPETL 1181
>gi|333909414|ref|YP_004483000.1| integral membrane sensor hybrid histidine kinase [Marinomonas
posidonica IVIA-Po-181]
gi|333479420|gb|AEF56081.1| integral membrane sensor hybrid histidine kinase [Marinomonas
posidonica IVIA-Po-181]
Length = 1057
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 26/143 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED Q + +L G V + ++GE AV M
Sbjct: 935 VLLAEDNLTNQIVARGLLNLYGVEVVIAENGERAVTLAQQMT------------------ 976
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMDCQM MDG +ATR IR+ + ET ++PIIA +A ++ ECF
Sbjct: 977 -------FDLVLMDCQMPVMDGYEATRHIRQFDG-TETPANVPIIALSANAMKGDQDECF 1028
Query: 187 NSGMDTFLNKPAQEHLLAAAIVE 209
++GM+ + KP + L A+ +
Sbjct: 1029 SAGMNDHIAKPVSQDKLVEALTK 1051
>gi|373947584|ref|ZP_09607545.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386326568|ref|YP_006022685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333820713|gb|AEG13379.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373884184|gb|EHQ13076.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1629
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 27/200 (13%)
Query: 15 EKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQA 74
E ++ H + F PVT+ I+ +A ++ + ++ L GL++L+VED
Sbjct: 1236 ESQQIRHVPFVNFLTKPVTSQILAEAVLNAIEGKTMEAHPQPRSQRFLAGLTILVVEDNQ 1295
Query: 75 VLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134
+ +++ +L GA V L E +E ++L++ + +
Sbjct: 1296 LNRQVIDELLSYEGANVVL---AEGGMEGVSLVLESGDL--------------------F 1332
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
D+++MD QM MDG +ATR IR E A ++PI+A TA + + +EC N+GM+ +
Sbjct: 1333 DIVIMDMQMPDMDGLEATRRIRADERFA----ALPILAMTANASQSDRQECLNAGMNDHV 1388
Query: 195 NKPAQEHLLAAAIVETIARK 214
KP LL +I+ + R+
Sbjct: 1389 GKPIDMPLLLPSILRLVGRE 1408
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VL+V+D + I ++L G V G +A+ + ++H+
Sbjct: 1138 LSGYRVLVVDDNELTVEILEKILTGFGCEVETALGGYSALAKVK-------QSHE----- 1185
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S +D++LMD +M +DG + ++R +A +T + + A+ V A++
Sbjct: 1186 --------KSTPFDVVLMDWRMPDLDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAES 1237
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+ + + FL KP +LA A++ I K+
Sbjct: 1238 Q-QIRHVPFVNFLTKPVTSQILAEAVLNAIEGKT 1270
>gi|445497405|ref|ZP_21464260.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
gi|444787400|gb|ELX08948.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
Length = 1020
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 29/154 (18%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
V KVL G+ VLLVED + Q++ +L++ GA V + ++GE EA+ L+
Sbjct: 889 VPGPKVLSGVRVLLVEDNPINQQVARGILEQAGAVVAVGENGE---EALKLL-------- 937
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
+ DL+LMD QM MDG ATR IR E ++P+IA TA
Sbjct: 938 -------------RDGLQCDLVLMDVQMPVMDGFTATRAIR-----GELRMTLPVIAMTA 979
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
V C +GMD F+ KP + A I +
Sbjct: 980 GVMESERERCIAAGMDDFIGKPVDVDQMFATIAK 1013
>gi|428222118|ref|YP_007106288.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427995458|gb|AFY74153.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1752
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 28/145 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED + Q++ MLK+LG V + +G A+E M +
Sbjct: 1633 LRILIAEDNQINQKVASTMLKRLGYDVEIANNGLEALEKMRIY----------------- 1675
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DLI MD QM MDG ATR IR +E I+A TA V+ D E
Sbjct: 1676 --------PFDLIFMDMQMPEMDGLTATRQIR---SEFCLEDQPLIVAMTANVSTDCMEE 1724
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
CF +GMD F+ KP ++ L AI +
Sbjct: 1725 CFAAGMDEFVAKPVRQDDLIKAIAK 1749
>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
Length = 981
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V +R+ LKK GA V G++A++ + L
Sbjct: 842 QSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQL------------ 889
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETG--------QSIP 169
PH +D MD QM MDG +ATR IR +E EA G + IP
Sbjct: 890 -------------PHNFDACFMDIQMPEMDGFEATRRIRTMEVEANKGGLSATEGKRPIP 936
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQE 200
I+A TA V EC GM+ +++KP +E
Sbjct: 937 ILAMTADVIHATYEECLKCGMNGYVSKPFEE 967
>gi|398854922|ref|ZP_10611435.1| CheY-like receiver domain-containing protein [Pseudomonas sp. GM80]
gi|398233238|gb|EJN19173.1| CheY-like receiver domain-containing protein [Pseudomonas sp. GM80]
Length = 137
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 29/141 (20%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EG +VLLVED V Q + ML+ LG V++ DG AV + A G +
Sbjct: 17 EGRNVLLVEDNPVNQTVIEAMLRSLGFTVSVATDGAQAVRS------AEGND-------- 62
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
+++ILMDC++ +DG +ATR IRRL A+ +PIIA TA +
Sbjct: 63 -----------FEVILMDCRLPIIDGYEATRQIRRLPGRAD----VPIIALTANALQGDR 107
Query: 183 RECFNSGMDTFLNKPAQEHLL 203
C ++GM+ +L KP + + L
Sbjct: 108 ETCLSAGMNDYLAKPFKRNDL 128
>gi|121713400|ref|XP_001274311.1| two component histidine kinase 1, putative [Aspergillus clavatus
NRRL 1]
gi|119402464|gb|EAW12885.1| two component histidine kinase 1, putative [Aspergillus clavatus
NRRL 1]
Length = 675
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 79/179 (44%), Gaps = 38/179 (21%)
Query: 33 TNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
T ++ + E S+ S P + E +LLVED + QRI R L+ LG V
Sbjct: 532 TAKLVAETERSNGSSPAD------------ENRHILLVEDNVINQRIVSRKLQSLGFQVV 579
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+G A+EA+ + +D ILMD M MDG AT
Sbjct: 580 EANNGREALEAVY-------------------------ARRFDCILMDQSMPVMDGNAAT 614
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
R IR E E +T IP++ TA V A+ ++E SGMD ++KP + L I E +
Sbjct: 615 RAIREFEKE-KTVDHIPVLGVTANVRAEQQQEMLQSGMDDVIHKPYKMEELTKKIQELL 672
>gi|406888085|gb|EKD34675.1| Sensor protein [uncultured bacterium]
Length = 752
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 45 SSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104
++ P+ D + + L +LLVED+ + + + + +L++ G VT+ +G A+E +
Sbjct: 603 ATIPLEDPALLCNAANGRQPLRILLVEDEYINRVLAVTVLEREGWKVTVAGNGVQALELL 662
Query: 105 TLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
+ +DLILMD QM ++G +ATR IR+ E T
Sbjct: 663 -------------------------DKKCFDLILMDIQMPELNGYEATRTIRK--NEDRT 695
Query: 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G+ +PIIA TA + +C GMD +++KP + L A I
Sbjct: 696 GRHVPIIAMTAYAVKGDREKCLAVGMDGYVSKPIRPDQLHAEI 738
>gi|302414298|ref|XP_003004981.1| signal transduction histidine-protein kinase barA [Verticillium
albo-atrum VaMs.102]
gi|261356050|gb|EEY18478.1| signal transduction histidine-protein kinase barA [Verticillium
albo-atrum VaMs.102]
Length = 1100
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
K V + N +IP E ++ D K E +LL ED V QR+ +++L+K
Sbjct: 875 KAVDLGNGMIPALENRATPSLA-------DNTKSFE---ILLAEDNRVNQRLAVKILEKY 924
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
VT+V +G AVEA+ +D+ILMD QM M
Sbjct: 925 HHVVTVVGNGHEAVEAI-------------------------KRKRFDVILMDVQMPIMG 959
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E EA + ++ PIIA TA + +C + MD +L+KP Q++ L I
Sbjct: 960 GFEATGKIRDYEREAGSHRT-PIIALTAHAMMGDREKCIQAQMDEYLSKPLQQNHLIQTI 1018
Query: 208 VE 209
++
Sbjct: 1019 LK 1020
>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
TrichCH4B]
gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
TrichCH4B]
Length = 770
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
+I QA G +S + D + K+ + + +L+ ED Q + RMLK +T+
Sbjct: 608 VISQALGGEASGN-SRDRSDAGSPKLGKRIKLLMAEDNRTNQVVVTRMLKSENVDITIAA 666
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
+G+ AVE + + P DLILMD M MDG +AT I
Sbjct: 667 NGQEAVE-----------------------MYLRDEP--DLILMDMMMPVMDGLEATEEI 701
Query: 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
RRLE E + +PIIA TA +E C GMD FL+KP ++ A++ET+
Sbjct: 702 RRLENEGDQPH-VPIIALTANALQSHEEACLEVGMDDFLSKPIRKQ----ALLETL---- 752
Query: 216 HKFSCDEQAEA 226
HK+ D +A+A
Sbjct: 753 HKW-YDVRADA 762
>gi|456352054|dbj|BAM86499.1| sensor histidine kinase [Agromonas oligotrophica S58]
Length = 850
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+V+D + + +MLK DG AV A +
Sbjct: 585 LRVLVVDDNPTNRLVATKMLKDFEIQTDTACDGAEAVTAASRF----------------- 627
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+YDLILMD +M MDG +ATR IR A E ++PIIAFTA ++ R
Sbjct: 628 --------NYDLILMDVRMPEMDGFQATRTIR---ARGERRSNVPIIAFTANAFMEDIRA 676
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ F+ KPA++ L AI+ +
Sbjct: 677 CREAGMNDFVVKPARKKALVEAILRVL 703
>gi|449299347|gb|EMC95361.1| hypothetical protein BAUCODRAFT_72144 [Baudoinia compniacensis UAMH
10762]
Length = 1362
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 21/145 (14%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + Q+I ++ +KKLG V V +G+ A++ +
Sbjct: 1056 ILVVEDNPINQQIALKTIKKLGFPVKAVWNGQEALDYL-------------------QQP 1096
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG--QSIPIIAFTALVTADNERE 184
++ +P D+ILMD QM MDG +AT IR QS PI+A TA + +
Sbjct: 1097 DSKENPRPDIILMDVQMPIMDGYRATYTIRNAAPFVSNPEVQSTPIVAMTASAIQGDREK 1156
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
C +GMD +L+KP ++ L +V+
Sbjct: 1157 CQMAGMDDYLSKPVKKPNLEKMLVK 1181
>gi|346979248|gb|EGY22700.1| signal transduction histidine-protein kinase barA [Verticillium
dahliae VdLs.17]
Length = 1109
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
K V + N +IP E ++ + D K E +LL ED V QR+ +++L+K
Sbjct: 884 KAVDLGNGMIPALENRATP-------SLADNTKSFE---ILLAEDNRVNQRLAVKILEKY 933
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
VT+V +G AVEA+ +D+ILMD QM M
Sbjct: 934 HHVVTVVGNGHEAVEAI-------------------------KRKRFDVILMDVQMPIMG 968
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR E EA + ++ PIIA TA + +C + MD +L+KP Q++ L I
Sbjct: 969 GFEATGKIRDYEREAGSHRT-PIIALTAHAMMGDREKCIQAQMDEYLSKPLQQNHLIQTI 1027
Query: 208 VE 209
++
Sbjct: 1028 LK 1029
>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 806
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 17 LELEHGLQLEFKPVPVTNNI----IPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVED 72
+EL HG + K VP + +P S +D D +K L GL +LLVED
Sbjct: 636 VELMHG-NISVKSVPGQGSTFYVDLPLKAAEDSDVSRQEDSQ--DSEKALSGLRILLVED 692
Query: 73 QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132
+ ++L+K G V ++G AVEA
Sbjct: 693 DPANRFAMQKLLQKSGHHVQTAQNGSQAVEAFA-------------------------HS 727
Query: 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF-NSGMD 191
H+D I MD M MDG +ATR IR ++ ++ +PIIA TA T + +RE F SGMD
Sbjct: 728 HFDCIFMDIHMPVMDGVQATRKIRSMQ-DSGIAPKVPIIALTA-YTLNGDREKFLESGMD 785
Query: 192 TFLNKPAQ 199
+L KP Q
Sbjct: 786 EYLGKPVQ 793
>gi|254429063|ref|ZP_05042770.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
gi|196195232|gb|EDX90191.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
Length = 713
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 9 ETTSHPEKLEL--EHGLQLEFKPV--PVTNNIIPQAEGSSSSCPVND-DVTGVDEKKVLE 63
E SH +L +H L + +PV V + + G PV D + +E++ +
Sbjct: 521 EERSHAAVQQLIDKHDLVVLVRPVHRTVLRQGLARLVGLQRQMPVGDAPLQTPEERQRRK 580
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
++LVED V Q + ML KLG V V +GE A+ +
Sbjct: 581 RFRLMLVEDNEVNQLVTRGMLSKLGFQVKTVSNGETALALL------------------- 621
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
P +DL+LMDC M MDG + TR +R +E + + ++ P++A TA +
Sbjct: 622 -----EQEP-FDLVLMDCMMPEMDGFEVTRRLREIEQDKASLRT-PVVAVTANTAEGVQA 674
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
C +GMD FL KP HL A +ET+ R+
Sbjct: 675 RCLAAGMDDFLAKPV--HLDA---LETVLRR 700
>gi|85091348|ref|XP_958858.1| hypothetical protein NCU04615 [Neurospora crassa OR74A]
gi|21622508|emb|CAD37055.1| related to protein histidine kinase [Neurospora crassa]
gi|28920246|gb|EAA29622.1| hypothetical protein NCU04615 [Neurospora crassa OR74A]
Length = 1266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D + + R+LK + VT+ KDG+ A + ++ A N+ H
Sbjct: 1023 LRVLVADDNSTNVEVVSRLLKLEEVYDVTIAKDGQEAYD----LVKA--------NMEH- 1069
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
NL+ +D+I MD QM ++DG ++TR+IR++ G S PI+A TA N +
Sbjct: 1070 -NLQ------FDVIFMDIQMPNLDGLQSTRLIRQM------GYSAPIVALTAFSEESNVK 1116
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL+KP + L
Sbjct: 1117 ECMESGMDEFLSKPIRRPAL 1136
>gi|381157615|ref|ZP_09866849.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380881478|gb|EIC23568.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1502
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 27/151 (17%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ G VLL EDQ + ++I +L+ +G VT DG A+E +T +A
Sbjct: 1122 IRGQRVLLAEDQDINRQIATELLESIGLRVTTANDGREALEHLTAEPDA----------- 1170
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+DL+LMD QM MDG +ATR IR AE +PI+A TA +
Sbjct: 1171 ------------FDLVLMDLQMPVMDGFEATRQIRADARWAE----LPIVAMTAHAMSAE 1214
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ C +GM+ L KP L AA+V IA
Sbjct: 1215 RQRCLAAGMNDHLAKPIDIDALHAALVRWIA 1245
>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
gi|122126078|sp|Q54YZ9.2|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
Length = 2062
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED AV QR+ IR+L+K G V L ++G AV + L
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQL-------------------- 1770
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD QM G +AT IR+ E E G PIIA TA A + +C
Sbjct: 1771 -----RKFDLILMDVQMPHCGGFEATAQIRK--REHEQGIHTPIIAMTAHALARDRVKCL 1823
Query: 187 NSGMDTFLNKPAQEHLLAAAIVET--IARKSHKFSCDEQAEAQ 227
+GMD +++KP L A I + I++ + + +Q +AQ
Sbjct: 1824 EAGMDDYISKPINPDQLKAMIEKYLFISKSCNSYEQFQQLQAQ 1866
>gi|409201880|ref|ZP_11230083.1| sensory transduction histidine kinase [Pseudoalteromonas
flavipulchra JG1]
Length = 676
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGC 149
+ LV D + V M ++N G H I +++G +++ +D++ MDC M MDG
Sbjct: 553 ILLVDDNQINVLVMEKLLNQFGATH-IDKVYNGEQAVKSCQDKTFDIVFMDCVMPIMDGF 611
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
+ATR IRRL E G IIA TA + ++ C+ +GM+ FL+KP Q L A+
Sbjct: 612 EATRSIRRLSKEKRQGPH--IIALTANTSESDKEACYEAGMNNFLSKPIQLDALRGAL 667
>gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
Length = 1482
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 10/174 (5%)
Query: 48 PVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107
PV TG +L+VED + Q++ ML+K G + +G+ AV+ +
Sbjct: 1224 PVTTPPTGRAASMPDRSCKLLVVEDNMINQKVVCTMLRKAGYRFDVAVNGQEAVDMVKAA 1283
Query: 108 INAAG------KNHQIQNLHHGSN--LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
+ A N +++ ++ T + YDLILMDCQM +DG +AT +R+LE
Sbjct: 1284 VETAPIIEEDPSNPDLESQQPSTDDAEPTQSWCPYDLILMDCQMPVLDGYEATIQLRKLE 1343
Query: 160 AEAET--GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
A+ + + +PI+A TA + CF GM +++KP L A + +I
Sbjct: 1344 AKYKPKGARLLPILAMTAEALPQDRARCFECGMTGYISKPISYAQLLAHLKSSI 1397
>gi|42524079|ref|NP_969459.1| sensor/response regulator hybrid [Bdellovibrio bacteriovorus HD100]
gi|39576287|emb|CAE80452.1| probable sensor/response regulator hybrid [Bdellovibrio
bacteriovorus HD100]
Length = 123
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 73/156 (46%), Gaps = 34/156 (21%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
++ L VL+ ED V Q I ML KLG +T+V++G+ AVE +
Sbjct: 1 MKPLHVLVAEDNTVNQLIVRGMLVKLGHNITMVENGKRAVEEL----------------- 43
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ +DLILMDC M MDG AT+ IR +++PIIA TA A+
Sbjct: 44 --------QATAFDLILMDCHMPEMDGFLATQTIR----ANPKFKTLPIIAMTASEIAEE 91
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
+ C GM FL KP L A +E + RK K
Sbjct: 92 KDRCVQVGMTDFLAKP-----LTMATLEAVLRKHSK 122
>gi|358378608|gb|EHK16290.1| hypothetical protein TRIVIDRAFT_196099 [Trichoderma virens Gv29-8]
Length = 1141
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 32/165 (19%)
Query: 45 SSCPVNDDVTGVDEK----KVLEG-LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGE 98
+S P +D T V +K K +G L VL+ +D A + RMLK + V + KDG+
Sbjct: 969 TSSPSKEDQTAVIDKAMANKTGKGKLRVLVADDNATNVEVVSRMLKLEEVYDVAIAKDGQ 1028
Query: 99 AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158
A E ++ A+ + +Q +D+I MD QM ++DG ++TR+IR++
Sbjct: 1029 EAYE----LVKASMEKNQ----------------RFDVIFMDIQMPNVDGLQSTRLIRKM 1068
Query: 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
G PI+A TA N +EC SGMD FL+KP + L
Sbjct: 1069 ------GYLEPIVALTAFSEESNVKECIESGMDEFLSKPIRRPAL 1107
>gi|336473238|gb|EGO61398.1| hypothetical protein NEUTE1DRAFT_77394 [Neurospora tetrasperma FGSC
2508]
gi|350293489|gb|EGZ74574.1| hypothetical protein NEUTE2DRAFT_82032 [Neurospora tetrasperma FGSC
2509]
Length = 1274
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D + + R+LK + VT+ KDG+ A + ++ A N+ H
Sbjct: 1031 LRVLVADDNSTNVEVVSRLLKLEEVYDVTIAKDGQEAYD----LVKA--------NMEH- 1077
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
NL+ +D+I MD QM ++DG ++TR+IR++ G S PI+A TA N +
Sbjct: 1078 -NLQ------FDVIFMDIQMPNLDGLQSTRLIRQM------GYSAPIVALTAFSEESNVK 1124
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL+KP + L
Sbjct: 1125 ECMESGMDEFLSKPIRRPAL 1144
>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
Length = 2062
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED AV QR+ IR+L+K G V L ++G AV + L
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQL-------------------- 1770
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD QM G +AT IR+ E E G PIIA TA A + +C
Sbjct: 1771 -----RKFDLILMDVQMPHCGGFEATAQIRK--REHEQGIHTPIIAMTAHALARDRVKCL 1823
Query: 187 NSGMDTFLNKPAQEHLLAAAIVET--IARKSHKFSCDEQAEAQ 227
+GMD +++KP L A I + I++ + + +Q +AQ
Sbjct: 1824 EAGMDDYISKPINPDQLKAMIEKYLFISKSCNSYEQFQQLQAQ 1866
>gi|367471737|ref|ZP_09471342.1| putative sensor histidine kinase with a response regulator receiver
domain [Bradyrhizobium sp. ORS 285]
gi|365276056|emb|CCD83810.1| putative sensor histidine kinase with a response regulator receiver
domain [Bradyrhizobium sp. ORS 285]
Length = 731
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 79/165 (47%), Gaps = 33/165 (20%)
Query: 38 PQAEGSSSSCPVNDDV----TGVDEKKV-LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
PQ E S P V T V+E+ +E L VL+ ED Q + ++L KLG G
Sbjct: 571 PQPEVEQVSAPEATIVPVGETPVEERPANVEPLKVLVAEDNLTNQFVIKKLLDKLGHGYD 630
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
LV++G AV A+ Q Q+ YDLILMD M MDG AT
Sbjct: 631 LVENGTQAVAAV-----------QKQS--------------YDLILMDMMMPEMDGLTAT 665
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
R+IR L A Q I IIA TA T+ + C ++GM+ F+ KP
Sbjct: 666 RMIRSLPPPA---QDIYIIALTANATSQDHLACTDAGMNDFVTKP 707
>gi|428310395|ref|YP_007121372.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252007|gb|AFZ17966.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1392
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 28/156 (17%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
+ T + K L +LLVED V Q + + L LG V +GE A+ +T
Sbjct: 1118 EATAQNPKPAKSALKILLVEDHEVNQMVTLNQLAMLGFEADCVGNGEEAIAQLT------ 1171
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
+YDL+LMDCQM +DG T+ IRR E + + II
Sbjct: 1172 -------------------QQNYDLVLMDCQMPILDGYDTTQEIRRREG---SERHTTII 1209
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
A TA ++ ++C ++GMD +L+KP + L A I
Sbjct: 1210 ALTAHALPNDRQKCIDAGMDDYLSKPIAQEALGAMI 1245
>gi|410724256|ref|ZP_11363454.1| signal transduction histidine kinase [Clostridium sp. Maddingley
MBC34-26]
gi|410602261|gb|EKQ56742.1| signal transduction histidine kinase [Clostridium sp. Maddingley
MBC34-26]
Length = 706
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 27/147 (18%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
VL + +LLVED + Q++ +LKK G V +G+ A
Sbjct: 458 VLSNVKILLVEDSVINQKLVENILKKQGCQVITANNGKEA-------------------- 497
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
L T DLILMD Q+ +G + T+VIR E+E T + IPIIA TA
Sbjct: 498 -----LNTLKDTKVDLILMDVQLPETNGMEVTKVIR--ESEHYTNEHIPIIALTAFALNG 550
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAI 207
++ +C ++GMD+++ KP ++ L I
Sbjct: 551 DKEKCLSAGMDSYVTKPINKNELFKEI 577
>gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group]
Length = 653
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 40/167 (23%)
Query: 47 CPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
PVND L L +LL+ED + Q++ +++ G + + ++G+ ++ ++
Sbjct: 414 LPVND----------LGRLKILLLEDNRLNQKLAQNVIEGFGFEIDIAENGDQGIKLLS- 462
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
YDL+LMD QM + DG + T IR +E
Sbjct: 463 ------------------------ENQYDLVLMDLQMPARDGYQTTHYIR-----SELKN 493
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
IPIIA TA AD C N+GMD ++ KP ++H L AI + + +
Sbjct: 494 EIPIIAMTAHSLADEHHRCLNAGMDGYVPKPFKQHELLEAIKQALKK 540
>gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
Length = 582
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 26/150 (17%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E L GL VL+VED V +++ ML K+G V +G+ AV+A+
Sbjct: 450 EAPTLAGL-VLIVEDNPVNRKVAQAMLGKMGIQSKSVDNGQEAVDAIA------------ 496
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
Q + +LILMDCQM MDG +AT IRR E A +PI+A TA
Sbjct: 497 QGMRP------------NLILMDCQMPVMDGFEATTQIRRWEM-ANGQPRLPIVALTAGA 543
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAI 207
++ + C +GMD FL KP L+A+I
Sbjct: 544 FEEDRQNCLAAGMDDFLTKPVNMADLSASI 573
>gi|407701218|ref|YP_006826005.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250365|gb|AFT79550.1| response regulator receiver ATP-binding protein [Alteromonas
macleodii str. 'Black Sea 11']
Length = 888
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 30/156 (19%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E+ LEG VLLVED + Q + ML LG + +DG+ AV+
Sbjct: 763 EETSLEG-HVLLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQ--------------- 806
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+ N+P YDLILMD QM MDG +AT+ +R + TG +PII +A
Sbjct: 807 ---------KVENAPQYDLILMDVQMPVMDGYEATKQLRE---KGFTG--VPIIGLSANA 852
Query: 178 TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
++++ ++GM+ +L KP ++ L + + E + +
Sbjct: 853 MKEDKQSAIDAGMNDYLTKPIKQKSLISMLREYLGK 888
>gi|149278863|ref|ZP_01884998.1| sensory box histidine kinase/response regulator [Pedobacter sp.
BAL39]
gi|149230482|gb|EDM35866.1| sensory box histidine kinase/response regulator [Pedobacter sp.
BAL39]
Length = 526
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 37/182 (20%)
Query: 18 ELEHGLQLEFK-PVPVTNNIIPQ-AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAV 75
+L G F+ P +++PQ A +S++ VN + G D + VL+VED +
Sbjct: 354 KLGRGSNFYFRLPFETVKDVLPQTAIPASATTNVNLEDIGRD-------IHVLIVEDNPI 406
Query: 76 LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135
QR+ I++++ G T+ ++G AVE + + YD
Sbjct: 407 NQRLVIKLMEARGYQTTVAENGRIAVEQLA-------------------------ARDYD 441
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195
++LMD QM MDG +AT++IR++ A ++ PI+A TA +C + GM+ +++
Sbjct: 442 IVLMDLQMPEMDGYEATKLIRKMAAPK---KNTPIVAMTAHTIKGELEKCLSIGMNDYIS 498
Query: 196 KP 197
KP
Sbjct: 499 KP 500
>gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
BisB18]
gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
BisB18]
Length = 757
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 48 PVNDDVTGVDEKKVL---EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104
P D T + V +GLS+L+ ED + + +L KLG + DGE A+E+
Sbjct: 605 PAQDPATDAATRPVKPAPQGLSILVAEDNEINALLMRSLLSKLGHRAVITSDGEQALESW 664
Query: 105 TLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAET 164
L ++AG YDL+LMD QM +DG + T+ IR EA
Sbjct: 665 -LAADSAGAA-------------------YDLVLMDIQMPHLDGIETTKRIRAHEA-GHR 703
Query: 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+ PI+A TA ++ CF +GMD FL KP L A+ A +
Sbjct: 704 ARRTPILALTANTLVEDRYACFEAGMDGFLVKPLDRDKLTEALASMQASR 753
>gi|386827454|ref|ZP_10114561.1| putative ATPase [Beggiatoa alba B18LD]
gi|386428338|gb|EIJ42166.1| putative ATPase [Beggiatoa alba B18LD]
Length = 2059
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 28/137 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ L++LLV+D AV +++G+ LKKLG DG ++A+T++
Sbjct: 1927 ISSLNILLVDDNAVNRKVGLLQLKKLGYQADTATDG---LDALTVL-------------- 1969
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
+ +YD++LMD QM MDG +ATR+I E+E IIA TA ++
Sbjct: 1970 --------RAKNYDIVLMDMQMPKMDGLEATRIIIETWQESERPW---IIAMTANAMKED 2018
Query: 182 ERECFNSGMDTFLNKPA 198
+CF +GM ++ KP
Sbjct: 2019 REKCFAAGMQDYITKPV 2035
>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 985
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 34/151 (22%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V +R+ LKK GA V G+AA++ + L
Sbjct: 846 QSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQL------------ 893
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS--------IP 169
PH +D MD QM MDG +ATR+IR +E + G+S +P
Sbjct: 894 -------------PHNFDACFMDIQMPEMDGFEATRLIRMMENKENEGESYAGEGKWHMP 940
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQE 200
I+A TA V EC GMD +++KP +E
Sbjct: 941 ILAMTADVIHATYDECLKCGMDGYVSKPFEE 971
>gi|386778452|gb|AFJ23813.1| GacS [Pseudomonas putida]
Length = 918
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 26/143 (18%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L+ +GA V V +G +AV+A+ + P +DL+LMD Q
Sbjct: 686 LLEGMGAAVVAVDNGFSAVQAV------------------------QDEP-FDLVLMDVQ 720
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDGC T IRR E +++ +PI+A TA A+ +R +SGMD +L KP E
Sbjct: 721 MPGMDGCACTEQIRRWET-SQSSPPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQ 779
Query: 203 LAAAIVETIARKSHKFSCDEQAE 225
LA +++ S D E
Sbjct: 780 LAQVVMKWTGLSLGTPSLDRATE 802
>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
Length = 972
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 29/145 (20%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VLL ED V Q + + +L+ G V + DG AVE A G
Sbjct: 853 GRRVLLAEDNPVNQEVAVALLESAGLEVVVADDGARAVEL------ACG----------- 895
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
SP +DL+LMD QM MDG ATR IR G+++PI+A TA ++
Sbjct: 896 -------SPPFDLVLMDVQMPGMDGLTATRTIRE-----RAGRTLPIVAMTANAFGEDRE 943
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIV 208
C +GMD + KP +L ++
Sbjct: 944 ACLAAGMDDHVAKPVDPAMLYTTLL 968
>gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031]
gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031]
Length = 999
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLL ED V Q++ + ML KLG + +G A++AM
Sbjct: 743 LHVLLAEDSVVNQKVALSMLGKLGCFPDVAANGREAIDAM-------------------- 782
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
YDL+ MDCQM +DG + TR IR+ + IP++A TA + +
Sbjct: 783 -----RQKRYDLVFMDCQMPEIDGYEVTRRIRK-DHSLLCSPDIPVVAMTANAMKGDREK 836
Query: 185 CFNSGMDTFLNKPAQE 200
C ++GMD F+ KP ++
Sbjct: 837 CIDAGMDDFMAKPLKK 852
>gi|375104143|ref|ZP_09750404.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374664874|gb|EHR69659.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 959
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
E+ V + L+ ED AV + + + +L LG L ++G AV+ AA +
Sbjct: 832 ERAVARSVRALVAEDNAVNREVALELLAALGVPADLAENGREAVDM------AAARA--- 882
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
YDLILMD QM MDG +ATR IR+L A T PI+A TA
Sbjct: 883 ----------------YDLILMDMQMPEMDGLQATRAIRQLAVHART----PIVAMTANA 922
Query: 178 TADNERECFNSGMDTFLNKPAQ 199
A++ C +GMD + KP +
Sbjct: 923 FAEDRAACLQAGMDDHIAKPVE 944
>gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS
[Pseudomonas syringae pv. aesculi str. 2250]
gi|422581194|ref|ZP_16656337.1| response regulator, sensor histidine kinase component GacS
[Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS
[Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 917
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L+ +GA V V+ G AAV A+ +DL+LMD Q
Sbjct: 685 LLEDMGAEVVAVEGGYAAVNAV-------------------------QQEAFDLVLMDVQ 719
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IR EAE S+PI+A TA A+ +R SGMD +L KP E
Sbjct: 720 MPGMDGRQATEAIRAWEAE-RNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQ 778
Query: 203 LAAAIVETIARKSHKFSCDEQAEAQD 228
LA +++ + + Q EA D
Sbjct: 779 LAQVVLKWTGLALRTPAPERQNEAPD 804
>gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
DX-1]
gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
DX-1]
Length = 873
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 28/147 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VL+ ED A Q + +ML++ A +T+V DG AV+A +
Sbjct: 628 LRVLIAEDDATNQMVVTKMLQEFAAEITVVSDGTDAVQAAS------------------- 668
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++LMD +M +MDG AT+ IR + +PIIA TA D+ +
Sbjct: 669 ------EREFDVVLMDVRMPNMDGLAATQAIR---GKGNALAKLPIIALTANAFPDDVKV 719
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETI 211
C +GM+ FL KP ++ L AA++ +
Sbjct: 720 CREAGMNDFLAKPLRKPALVAAVLRAL 746
>gi|386815517|ref|ZP_10102735.1| histidine kinase [Thiothrix nivea DSM 5205]
gi|386420093|gb|EIJ33928.1| histidine kinase [Thiothrix nivea DSM 5205]
Length = 448
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 71/146 (48%), Gaps = 28/146 (19%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G VL+VED V Q + ML KLG VTL + G AVE +
Sbjct: 324 GHHVLVVEDHKVNQLVAKGMLTKLGYKVTLAETGFQAVELL------------------- 364
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ +DL+LMD QM M+G +ATR+IR + + +PI+A TA +E+
Sbjct: 365 -----RSQDDFDLVLMDIQMPGMNGVEATRIIRNEFPD----RPLPILALTANAMKGDEQ 415
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVE 209
E +GMD L KP Q LAAA+ E
Sbjct: 416 EYLAAGMDACLTKPIQIVQLAAALRE 441
>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
Length = 1819
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLL ED + QR+ LK+LG LV GE A+E +
Sbjct: 1543 VLLAEDNSANQRLATVQLKRLGYQADLVTTGEQALE-----------------------M 1579
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ Y ILMDCQM MDG +ATR IR E E + IPIIA TA + C
Sbjct: 1580 YMRHPERYLAILMDCQMPVMDGFEATRRIR--EFEHTRQRHIPIIAMTANAMQGDREACI 1637
Query: 187 NSGMDTFLNKPAQEHLLA--AAIVETIARKS 215
+GMD +++KP L A VE R S
Sbjct: 1638 QAGMDDYISKPVSIQRLGEVLAAVERAVRPS 1668
>gi|442610596|ref|ZP_21025307.1| hypothetical protein PALB_22600 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441747813|emb|CCQ11369.1| hypothetical protein PALB_22600 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1110
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 36/193 (18%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKV-------LEGLSVLLVEDQAVLQRIGIRMLKKLGAG 90
P E P N V D K V L+G VLLVED V Q + +L K+G
Sbjct: 943 PMLETLYPLTPANALVMYQDAKSVAPEATAVLKG-HVLLVEDNKVNQIVASNLLSKMGLT 1001
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
++ G A++ + + H+DLILMDCQM +DG +
Sbjct: 1002 FSIANHGLEALDKL------------------------KSDEHFDLILMDCQMPELDGYE 1037
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210
++ IR+ A + +SI IIA TA ++ +C +GMD +L+KP Q L I
Sbjct: 1038 TSKQIRQGNA-GQQRRSIAIIALTANAMVGDKEKCLAAGMDAYLSKPLQYKELVDTIKLW 1096
Query: 211 IARK---SHKFSC 220
+A+ +H +C
Sbjct: 1097 LAKSTPATHSKTC 1109
>gi|398839666|ref|ZP_10596911.1| signal transduction histidine kinase [Pseudomonas sp. GM102]
gi|398112296|gb|EJM02159.1| signal transduction histidine kinase [Pseudomonas sp. GM102]
Length = 633
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 29/135 (21%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EG VLLVED AV + + ML+ LG V++V DG AV +
Sbjct: 513 EGRDVLLVEDNAVNRTVVEAMLRSLGFTVSVVTDGAQAVRSA------------------ 554
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
S +D ILMDC++ +DG +ATR IR+L A+ +PIIA TA +
Sbjct: 555 -------ESRTFDAILMDCRLPVIDGYEATRQIRQLPGCAD----VPIIALTANALQGDR 603
Query: 183 RECFNSGMDTFLNKP 197
C ++GM+ +L KP
Sbjct: 604 ETCLSAGMNDYLAKP 618
>gi|374705727|ref|ZP_09712597.1| histidine kinase [Pseudomonas sp. S9]
Length = 771
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 89/206 (43%), Gaps = 61/206 (29%)
Query: 3 IGKEQAETTSHPEKLE-------LEHGLQLEF--KPVPVTNNIIPQAEGSSSSCPVNDDV 53
+ EQA++ + E+L L H L+ F +P+ + N AE +C
Sbjct: 598 LAPEQAKSLAPLEQLARPMPRKVLYHALERHFHTRPLELKNRAAGHAETDYKAC------ 651
Query: 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGK 113
VLLVED V Q + ML KLG V + DGE A++ ++
Sbjct: 652 -------------VLLVEDNPVNQLVAKGMLIKLGYKVIIANDGEHALKQLS-------- 690
Query: 114 NHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ--SIPII 171
H + DLILMDC M MDG +A+R IR ++GQ +PII
Sbjct: 691 EHAV-----------------DLILMDCNMPIMDGYEASRRIR------QSGQYAGLPII 727
Query: 172 AFTALVTADNERECFNSGMDTFLNKP 197
A TA +D + C +GM +L KP
Sbjct: 728 ALTANALSDERQRCTAAGMSDYLAKP 753
>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
sediminis HAW-EB3]
gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
sediminis HAW-EB3]
Length = 2213
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 55 GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKN 114
G+D K + G VLLVED + Q++ +L+ G VT DG+ A E +
Sbjct: 1865 GLDAAKAIRGTHVLLVEDNDINQQVATELLEMAGLVVTTASDGQEACERV---------- 1914
Query: 115 HQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
+ +D+ILMD QM MDG ATR IR+ E +P+IA T
Sbjct: 1915 ---------------KTELFDVILMDIQMPVMDGYTATRHIRKFSGYEE----LPVIAMT 1955
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
A + +C ++GM+ + KP + AA+V+ +
Sbjct: 1956 ANAMDGDREKCLDAGMNDHIAKPIDPASMFAALVKWV 1992
>gi|367023633|ref|XP_003661101.1| hypothetical protein MYCTH_2300117 [Myceliophthora thermophila ATCC
42464]
gi|347008369|gb|AEO55856.1| hypothetical protein MYCTH_2300117 [Myceliophthora thermophila ATCC
42464]
Length = 1167
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D + + R+LK VT+ KDG+ A E ++ A + +Q+
Sbjct: 997 LRVLVADDNSTNIEVVSRLLKLEDVYDVTIAKDGQEAYE----LVKANMEKNQL------ 1046
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+D+I MD QM ++DG ++TR+IR++ G S PI+A TA N R
Sbjct: 1047 ----------FDVIFMDVQMPNLDGLQSTRLIRKM------GYSAPIVALTAFSEESNVR 1090
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVE 209
EC SGM+ FL+KP + L + +
Sbjct: 1091 ECMESGMNEFLSKPIRRPALKKVLAK 1116
>gi|443897806|dbj|GAC75145.1| WD40 repeat protein [Pseudozyma antarctica T-34]
Length = 1685
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 30/168 (17%)
Query: 55 GVDE---KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
GV E ++ + + +L+ ED + +I ++ LKK+G + KDG AVE +
Sbjct: 1305 GVSENPLQRPRKDIWILVAEDNLINAQIALKTLKKMGFSCKVAKDGLEAVEEV------- 1357
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
GK YDLILMDC M + DG +AT+ +R+ +E+ ++ PII
Sbjct: 1358 GKQP------------------YDLILMDCHMPNCDGYEATKRLRK--SESVDIRTTPII 1397
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS 219
A TA + +C +GM +L+KP + L + +V+ + S + S
Sbjct: 1398 AMTASAIRGDREKCLAAGMSDYLSKPVKSAALESTLVKWLFDPSTRQS 1445
>gi|357633257|ref|ZP_09131135.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357581811|gb|EHJ47144.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 575
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L VED AV G +L+ G + L DG A+E +
Sbjct: 453 ILFVEDDAVNALSGKSLLRTAGFSLDLAMDGREALELL---------------------- 490
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
H+DLILMD Q+ +DG +ATRVIR + E E+ +PIIA TA A + +
Sbjct: 491 ---RQKHFDLILMDIQLPVLDGVEATRVIRSAK-EFESQSRVPIIAMTAYAMAGDREKFL 546
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARK 214
+G D +L+KP L I+ I +K
Sbjct: 547 KAGFDAYLSKPFTMEELNDTILNFIVKK 574
>gi|380092955|emb|CCC09192.1| putative histidine kinase group protein [Sordaria macrospora k-hell]
Length = 1427
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 51 DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110
+DV+ +D KV +L+VED + Q+I I+ +KKLG V +G+ A+E ++ +
Sbjct: 1074 EDVSMLDRSKVF----ILVVEDNEINQQIAIKTIKKLGFEVAAAWNGKEALEYLSEA--S 1127
Query: 111 AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
AGK + D+ILMD QM +DG T ++R + +PI
Sbjct: 1128 AGKKRKP-----------------DIILMDVQMPLIDGYLCTHLLRHHIPYRTYVKDVPI 1170
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS-----CDEQAE 225
+A TA ++ +C +GMD +L+KP + L ++ K S C E E
Sbjct: 1171 VAMTASAIQGDKEKCKRAGMDDYLSKPVKSKTLEKMLLRWCTTKREDLSPATSNCSETGE 1230
>gi|392544011|ref|ZP_10291148.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida JCM
20779]
Length = 1243
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 29/151 (19%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K+ L GLS+L+ EDQ V Q I + +L GA V + +G+ A+E +
Sbjct: 884 KQALNGLSILVAEDQPVNQEIAVEILSSFGAQVAVADNGQEAIEQV-------------- 929
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+S H D++LMD QM MDG AT+ + R+E + T +PI+A TA
Sbjct: 930 -----------HSKHIDIVLMDMQMPVMDGITATQNL-RIEFDKNT---LPILAMTANAM 974
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
++ + C ++GM+ + KP L +I++
Sbjct: 975 EEDIQTCIDAGMNDHVTKPIDVEQLVKSILK 1005
>gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
UW101]
gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
UW101]
Length = 653
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 40/167 (23%)
Query: 47 CPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
PVND L L +LL+ED + Q++ +++ G + + ++G+ ++ ++
Sbjct: 414 LPVND----------LGRLKILLLEDNRLNQKLAQNVIEGFGFEIDIAENGDQGIKLLS- 462
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
YDL+LMD QM + DG + T IR +E
Sbjct: 463 ------------------------ENQYDLVLMDLQMPARDGYQTTHYIR-----SELKN 493
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
IPIIA TA AD C N+GMD ++ KP ++H L AI + + +
Sbjct: 494 EIPIIAMTAHSLADEHHRCLNAGMDGYVPKPFKQHELLEAIKQALKK 540
>gi|358390559|gb|EHK39964.1| hypothetical protein TRIATDRAFT_152868 [Trichoderma atroviride IMI
206040]
Length = 1377
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 21/145 (14%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA-GKNHQIQNLHHG 123
L +L+VED V Q+I R + KLG V+ +G+ EA+ MI A+ G+N +
Sbjct: 1114 LHILVVEDNPVNQKIATRTIGKLGFQVSATWNGK---EALDYMIGASKGQNKKP------ 1164
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
D+ILMD QM +DG K T ++R + Q +PI+A TA +
Sbjct: 1165 -----------DIILMDVQMPIIDGYKCTHLLRHHLPYKKLVQDVPIVAMTASAIQGDRE 1213
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIV 208
+C +GMD +L KP +L ++
Sbjct: 1214 KCTRAGMDDYLPKPVTMKVLEKMLI 1238
>gi|400595315|gb|EJP63120.1| putative histidine kinase HHK6p [Beauveria bassiana ARSEF 2860]
Length = 1379
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q+I R ++KLG VT +G EA+ ++ A+ G N+
Sbjct: 1106 ILVVEDNAVNQKIATRTIRKLGFQVTAAWNGR---EALEYVLGAS----------EGRNV 1152
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ D+ILMD QM +DG K T ++R ++PI+A TA + +C
Sbjct: 1153 KP------DIILMDVQMPIIDGYKCTHLMRHHRPYKGLIHNVPIVAMTASAIQGDREKCK 1206
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQA 224
+GMD +L KP +L ++ + + S ++A
Sbjct: 1207 RAGMDDYLAKPVTMSILERMLIRWCVSRRRESSVADRA 1244
>gi|410635517|ref|ZP_11346128.1| hypothetical protein GLIP_0687 [Glaciecola lipolytica E3]
gi|410144918|dbj|GAC13333.1| hypothetical protein GLIP_0687 [Glaciecola lipolytica E3]
Length = 1184
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+K L+ VLLVED + Q + MLK L L +G A+E +
Sbjct: 1054 RKPLQMPRVLLVEDNIINQAVADEMLKNLNCQTELANNGLEALERLN------------- 1100
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
+ +D++LMDCQM MDG +A+R IR + + +IPI+A TA
Sbjct: 1101 ----------QTAIPFDIVLMDCQMPVMDGYEASRKIRAAQ-DVRFDPNIPIVALTANAM 1149
Query: 179 ADNERECFNSGMDTFLNKP 197
++ +CF +GMD +L KP
Sbjct: 1150 KGDQEKCFAAGMDGYLTKP 1168
>gi|383789521|ref|YP_005474095.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
gi|383106055|gb|AFG36388.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
Length = 642
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 32/164 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ G +L+ ED + QR+ +L+ G V V++G A+
Sbjct: 511 VSGSRILVAEDDRINQRVITAILRAQGCVVETVENGRQAL-------------------- 550
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S LET + YDL+LMD QM MDG +AT++IR A SIPI+A TA + +
Sbjct: 551 --SVLETGD---YDLVLMDLQMPEMDGLQATQIIRD-PASPVRDHSIPIVAVTAFASELD 604
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAE 225
C ++GMD FL KP + AA +++TI + + S D Q E
Sbjct: 605 RTACMDAGMDGFLGKP----ISAAKLLQTI--REYASSGDLQKE 642
>gi|425773115|gb|EKV11487.1| hypothetical protein PDIG_50200 [Penicillium digitatum PHI26]
gi|425782243|gb|EKV20165.1| hypothetical protein PDIP_19440 [Penicillium digitatum Pd1]
Length = 1025
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 36/170 (21%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+PV + N I+P ++ P L++LL ED V Q++ +R+L+K
Sbjct: 866 RPVDLWNGILPALGNRATRTP----------SGYTRSLAILLAEDNDVNQKVAVRILEKF 915
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
VT+V++G AV+ HN YD++LMD QM M
Sbjct: 916 NHNVTVVENGLQAVKE-----------------------AKHN--RYDVVLMDVQMPVMG 950
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G +AT IR+ E ++ PIIA TA + +C +GMD +L+KP
Sbjct: 951 GFEATGNIRQYEKMNGLPRT-PIIALTAHAMLGDRDKCIQAGMDDYLSKP 999
>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
psychrerythraea 34H]
gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
psychrerythraea 34H]
Length = 1683
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 31/151 (20%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +LLVED + Q + + +LK+ V L ++G AVE +
Sbjct: 1338 LSGAKILLVEDNELNQELALELLKQSNIDVELAENGAIAVEKFS---------------- 1381
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
S H+D ILMD QM MDG AT++IR E+ SIPIIA TA +
Sbjct: 1382 ---------SRHFDGILMDLQMPVMDGFTATKIIR------ESDSSIPIIAMTANAMVSD 1426
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ + SGM+ + KP + + A I + ++
Sbjct: 1427 KEKVLASGMNDHITKPINVNTMFATIAKWVS 1457
>gi|406878193|gb|EKD27173.1| CheY-like protein receiver [uncultured bacterium]
Length = 507
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 58 EKKVLEG--LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
E K +G L VLLVED V Q++ +M +K+G + + DG +EA+ ++
Sbjct: 125 EPKNFQGVLLRVLLVEDNEVNQKMMTKMTRKMGIKMDIANDG---IEAIRMI-------- 173
Query: 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
Y LI MD QM MDG +ATR IR L PIIA TA
Sbjct: 174 --------------QEKKYSLIFMDVQMPGMDGYEATRKIRELHINT------PIIATTA 213
Query: 176 LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCD 221
+ ++ C +SGMD ++ KP + H + + + I + K D
Sbjct: 214 HAMSGDKDRCLSSGMDYYIPKPIRRHQIYEIVSKFIGKDILKAKVD 259
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+E ++D + +D +M ++G + R+ + T IA + + D+
Sbjct: 32 IEIFTENNFDFVFIDIRMPKINGYELVESFARMNPDYNT----KFIALSTNIYDDSRNNV 87
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIA 212
NSG D FL KP +E ++A+ + I
Sbjct: 88 LNSGFDAFLLKPVKEMMVASIFAKFIG 114
>gi|386726959|ref|YP_006193285.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus K02]
gi|384094084|gb|AFH65520.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus K02]
Length = 1181
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 31/162 (19%)
Query: 42 GSSSSCPVNDDVTG-VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100
G+ ++ P +D G E+ L G+ VL+ ED V +++ +R+L+KLG ++G A
Sbjct: 1031 GAPAAAPPEEDQAGPAPEESGLYGVRVLVAEDHPVNRQLLLRILEKLGCRADFAENGAEA 1090
Query: 101 VEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRV-IRRLE 159
VEA+ S YD +LMD QM MDG +A R RRL
Sbjct: 1091 VEAVL-------------------------SRPYDAVLMDVQMPVMDGTEAARTPFRRLP 1125
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH 201
E PIIA TA ++ C SGM FL KP ++
Sbjct: 1126 PECVP----PIIAVTAHARPEDREACLRSGMKDFLPKPVRKQ 1163
>gi|358401540|gb|EHK50841.1| hypothetical protein TRIATDRAFT_158454 [Trichoderma atroviride IMI
206040]
Length = 1161
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 27/140 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ +D A + RMLK V + KDG+ A E ++ A+ + +Q
Sbjct: 1003 LRVLVADDNATNVEVVSRMLKLEDVYDVAIAKDGQEAFE----LVKASMEKNQ------- 1051
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+D+I MD QM ++DG ++TR+IR++ G + PI+A TA N +
Sbjct: 1052 ---------RFDVIFMDIQMPNVDGLQSTRLIRKM------GYAAPIVALTAFSEESNVK 1096
Query: 184 ECFNSGMDTFLNKPAQEHLL 203
EC SGMD FL+KP + L
Sbjct: 1097 ECIESGMDEFLSKPIRRPAL 1116
>gi|386289371|ref|ZP_10066501.1| putative sensor/response regulator hybrid [gamma proteobacterium
BDW918]
gi|385277434|gb|EIF41416.1| putative sensor/response regulator hybrid [gamma proteobacterium
BDW918]
Length = 643
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 33/157 (21%)
Query: 46 SCP--VNDDVT--GVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAV 101
SCP ++ D+ + E+ +L G +VL+VED + Q + ++L++ G +G A+
Sbjct: 486 SCPYQISSDLEHHTLQEETLLAGKTVLIVEDNPINQLLVSKILRRWGMTTVTTDNGAEAL 545
Query: 102 EAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE 161
A+ H+D+ILMD QM MDG +AT+ IRR
Sbjct: 546 IAI-------------------------EKQHFDIILMDLQMPVMDGFEATQAIRRHAQY 580
Query: 162 AETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198
T PIIA TA D+ CF GM+ FL+KP
Sbjct: 581 RHT----PIIALTANNFKDDSDYCFRVGMNDFLSKPV 613
>gi|367052679|ref|XP_003656718.1| hypothetical protein THITE_2121766 [Thielavia terrestris NRRL 8126]
gi|347003983|gb|AEO70382.1| hypothetical protein THITE_2121766 [Thielavia terrestris NRRL 8126]
Length = 1311
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 26/145 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LL ED V QR+ +++L+K VT+V +GE AVEA+
Sbjct: 1080 FEILLAEDNTVNQRLAVKILEKYHHVVTVVGNGEEAVEAV-------------------- 1119
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D+ILMD QM M G +AT IR E T Q PIIA TA + +
Sbjct: 1120 -----KRKKFDVILMDVQMPIMGGFEATGKIREYERSLGT-QRTPIIALTAHAMMGDREK 1173
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
C + MD +L+KP Q++ L I++
Sbjct: 1174 CIQAQMDEYLSKPLQQNHLIQTILK 1198
>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
Length = 760
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 37/168 (22%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V +R+ LK GA V G+AA+E +
Sbjct: 612 RSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQF------------ 659
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEA------ETGQS---- 167
PH +D MD QM MDG +ATR IR +E A E G+
Sbjct: 660 -------------PHKFDACFMDIQMPEMDGFEATRRIREMERTANEETNSECGERKSEF 706
Query: 168 -IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+PI+A TA V EC GMD +++KP +E L A+ + K
Sbjct: 707 HLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTK 754
>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867992|ref|ZP_09604390.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470093|gb|EHP30297.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
Length = 1127
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED Q + +L G + +G +EA+ L+ ++A K
Sbjct: 802 VLLVEDNQTNQIVAQGILNSFGLNADVANNG---IEALELLKDSAKK------------- 845
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ---SIPIIAFTALVTADNER 183
YD++LMDCQM +DG TR IR +A+ G+ SIPIIA TA A ++
Sbjct: 846 -------YDVVLMDCQMPELDGYDTTRAIR----DAKAGKAYISIPIIAMTANAMAGDKE 894
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
+C +GMD +L+KP LL + + + + +K
Sbjct: 895 KCSIAGMDDYLSKPLDPELLRSTLAKWLLKK 925
>gi|90021568|ref|YP_527395.1| response regulator receiver domain-containing protein
[Saccharophagus degradans 2-40]
gi|89951168|gb|ABD81183.1| response regulator receiver [Saccharophagus degradans 2-40]
Length = 569
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
LL+E++ +R +R+ + + LV D AV ++ ++ QI+ +G +
Sbjct: 275 LLLENREEQERAIVRVPSENSPKILLVDDN--AVNREVILGILEDEDFQIETAVNGQDAL 332
Query: 128 ---THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
T +S ++DLILMDCQM MDG KATR IR E + + IPIIA TA A ++
Sbjct: 333 AALTRSSLNFDLILMDCQMPVMDGYKATREIRSSEI-LKHYKHIPIIALTANAMAGDKET 391
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARK-----SHKFSCDEQAEAQDE 229
C SGM +L+KP L I + I K + SC+ AQ E
Sbjct: 392 CLASGMSDYLSKPIDGEQLLLIISKWIKPKLEAGNTEPLSCELNTTAQSE 441
>gi|408671578|ref|YP_006870462.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
gi|387857475|gb|AFK05571.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
Length = 1208
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 36/177 (20%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95
I P+ E S + +D KK LS+LL ED + QR+ +++K G + +
Sbjct: 929 IFPKVESSYKDASIEND----SNKKSSRKLSILLCEDNELNQRLAKTIIQKFGFDLDIAV 984
Query: 96 DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155
+GE ++ ++ KNH YDLILMD QM DG + T I
Sbjct: 985 NGEEGLKLLS-------KNH------------------YDLILMDLQMPVKDGYQTTIHI 1019
Query: 156 RR-LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
R L+ E IPIIA TA +++CF GM+ ++ KP ++ L I E +
Sbjct: 1020 RNVLKLE------IPIIAMTAHSLVGEQQKCFEIGMNAYVAKPFKQQELLNKIYEVV 1070
>gi|386394005|ref|ZP_10078786.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Desulfovibrio sp. U5L]
gi|385734883|gb|EIG55081.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Desulfovibrio sp. U5L]
Length = 264
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 27/163 (16%)
Query: 52 DVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAA 111
D G+D+ L L+VL+V+D V + + +L+K G +G A++ M+
Sbjct: 4 DAHGLDQD--LPSLAVLVVDDNDVNRLYMLHLLRKFGHRPATASNGREALDMMS------ 55
Query: 112 GKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171
P +D++LMD Q+ MDG TR++R + +IPI+
Sbjct: 56 ------------------REP-FDVVLMDVQLPDMDGLAVTRIVRAGQCGTANPANIPIL 96
Query: 172 AFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
A TA A++ C +GMD L KP + L AA+ ++ R+
Sbjct: 97 ALTAFAMAEDRERCLEAGMDDHLGKPVRVPELLAAVARSVERR 139
>gi|336276167|ref|XP_003352837.1| histidine kinase group protein [Sordaria macrospora k-hell]
Length = 1333
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 51 DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110
+DV+ +D KV +L+VED + Q+I I+ +KKLG V +G+ A+E ++ +
Sbjct: 1014 EDVSMLDRSKVF----ILVVEDNEINQQIAIKTIKKLGFEVAAAWNGKEALEYLSEA--S 1067
Query: 111 AGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
AGK + D+ILMD QM +DG T ++R + +PI
Sbjct: 1068 AGKKRKP-----------------DIILMDVQMPLIDGYLCTHLLRHHIPYRTYVKDVPI 1110
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFS-----CDEQAE 225
+A TA ++ +C +GMD +L+KP + L ++ K S C E E
Sbjct: 1111 VAMTASAIQGDKEKCKRAGMDDYLSKPVKSKTLEKMLLRWCTTKREDLSPATSNCSETGE 1170
>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
Length = 1049
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT 192
YDLILMD QM MDG +ATR IR E E G+ +PIIA TA A +C GMD
Sbjct: 954 RYDLILMDVQMPEMDGFEATRAIRSWEREHGVGR-VPIIAMTAHAIAGYREQCLEQGMDD 1012
Query: 193 FLNKPAQEHLLAAAIVETIAR 213
+L+KP ++ +L ++T+ R
Sbjct: 1013 YLSKPLKKQVL----LDTVGR 1029
>gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
ATCC 15264]
gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
ATCC 15264]
Length = 663
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 34 NNIIPQAEGSSSSCPVNDDVTGVDEKKVLEG-LSVLLVEDQAVLQRIGIRMLKKLGAGVT 92
++P AE + P D G D +G L +LL ED A + + +L +
Sbjct: 507 RTVLPVAE----TAP---DAAGRDSDGQPDGPLRILLAEDNAANRTLITALLASFDVALD 559
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
+V++G+ AV A+T + YDL+LMD QM MDG AT
Sbjct: 560 MVENGQEAVAAVT-------------------------ARSYDLVLMDMQMPVMDGPTAT 594
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
RVIR A G PI+A +A V + R+C ++GM + KP L AA++E
Sbjct: 595 RVIR---ASGGPGHDTPIVALSANVLPEQIRQCLDAGMQGHVAKPVDPRALMAALIE 648
>gi|410634398|ref|ZP_11345035.1| periplasmic sensor hybrid histidine kinase [Glaciecola arctica
BSs20135]
gi|410146254|dbj|GAC21902.1| periplasmic sensor hybrid histidine kinase [Glaciecola arctica
BSs20135]
Length = 571
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 27/135 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVED + Q + +L L V + DG +EA++L+
Sbjct: 446 LRVLLVEDNFINQEVMTAILNDLEIEVDVANDG---LEALSLL----------------- 485
Query: 125 NLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
H+ P +DLILMDCQM +MDG +ATR IR +A + IPIIA TA T ++ER
Sbjct: 486 ---RHSQPTTFDLILMDCQMPNMDGYEATRRIRAGDA-GDLFSKIPIIALTA-NTMNSER 540
Query: 184 E-CFNSGMDTFLNKP 197
E C +GM+ +L KP
Sbjct: 541 EKCLEAGMNEYLTKP 555
>gi|418940424|ref|ZP_13493789.1| multi-sensor hybrid histidine kinase [Rhizobium sp. PDO1-076]
gi|375052838|gb|EHS49240.1| multi-sensor hybrid histidine kinase [Rhizobium sp. PDO1-076]
Length = 753
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
D ++ L L +LLVED V Q + R L +LG V + DG EA+ L
Sbjct: 485 DSEEDLPRLKILLVEDNRVNQIVATRFLARLGQDVEIANDG---TEAVVL---------- 531
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+DL+LMD QM MDG +ATR R+ AE PIIA TA
Sbjct: 532 ------------ARQQKFDLVLMDMQMPVMDGIEATR---RIIAERGPSAETPIIAMTAN 576
Query: 177 VTADNERECFNSGMDTFLNKP 197
+ D+ R C ++GM F +KP
Sbjct: 577 ASDDDRRRCLDAGMSGFESKP 597
>gi|350532939|ref|ZP_08911880.1| hypothetical protein VrotD_17515 [Vibrio rotiferianus DAT722]
Length = 863
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 32/164 (19%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
AE + ++ P++ V G ++ +L+ ED + Q+I L+K G + +G+
Sbjct: 722 AEIAVNAQPLDQYVAGKHKR-------ILIAEDNLMNQKIASFFLEKAGYDYLITSNGKE 774
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
A++A+T +D ILMDC M MDG AT IRR E
Sbjct: 775 ALDAIT------------------------QGGEFDAILMDCMMPVMDGLTATEEIRRWE 810
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
+ + ++ IIA TA V ++ ++CF++GMD +L KP + H L
Sbjct: 811 DKTKKHKT-TIIALTASVLEEDIQKCFSAGMDAYLPKPYKSHQL 853
>gi|346320308|gb|EGX89909.1| autoinducer 2 sensor kinase/phosphatase luxQ [Cordyceps militaris
CM01]
Length = 1379
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED AV Q+I R ++KLG VT +G A+E ++ + G+N +
Sbjct: 1105 ILVVEDNAVNQKIATRTIRKLGFQVTATWNGREALEY--VLGASEGRNAKP--------- 1153
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
D+ILMD QM +DG K T ++R +PI+A TA + +C
Sbjct: 1154 --------DIILMDVQMPIIDGYKCTHLMRHHRPYKGLIHDVPIVAMTASAIQGDREKCK 1205
Query: 187 NSGMDTFLNKPAQEHLLAAAIVET-IARK------SHKFS-CDEQAE 225
+GMD +L KP +L ++ I+R+ H S C EQ+E
Sbjct: 1206 KAGMDDYLAKPVTMSILERMLIRWCISRRRETPLPDHATSDCSEQSE 1252
>gi|333894329|ref|YP_004468204.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
Length = 956
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+DLILMDCQM MDG +ATR IRR EA E + PIIA TA ++ +CFN+GM+ +
Sbjct: 869 FDLILMDCQMPDMDGFEATRRIRRGEA-GERYVNAPIIALTANAMKGDKEDCFNAGMNDY 927
Query: 194 LNKP 197
L+KP
Sbjct: 928 LSKP 931
>gi|392382751|ref|YP_005031948.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356877716|emb|CCC98562.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1179
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 38/169 (22%)
Query: 47 CPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTL 106
P +TG +++L + ED V ++ + +L++ G V V +G AV A+
Sbjct: 898 TPPGAPLTGTARRRIL------VAEDNPVNLQVTLALLRRAGHAVDSVSNGLEAVNAVAA 951
Query: 107 MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ 166
+ YDL+LMD QM MDG ATR IRR+ A
Sbjct: 952 L-------------------------PYDLVLMDVQMPEMDGLAATRAIRRMGGIA---A 983
Query: 167 SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
+PI+A TA V ++ C +GMD +L KP ++A +++T+AR S
Sbjct: 984 RVPIVAMTANVMEGDQAICLAAGMDDYLPKP----IVADQLLQTVARWS 1028
>gi|326796891|ref|YP_004314711.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
gi|326547655|gb|ADZ92875.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
Length = 1061
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 25/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLVED Q +G ++ G V + ++G+ A+E ++Q+
Sbjct: 934 VLLVEDNHTNQIVGKGIIGLFGVSVDIAQNGQEALE-------------KVQD------- 973
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
Y LI MDCQM MDG +ATR IR+L ++ T S+PI+A +A ++ +C
Sbjct: 974 -----KKYQLIFMDCQMPVMDGYEATREIRKLPVDSATSASVPIVALSANAMKGDDEKCI 1028
Query: 187 NSGMDTFLNKP 197
+GM+ + KP
Sbjct: 1029 QAGMNGHVAKP 1039
>gi|320583017|gb|EFW97233.1| Histidine kinase [Ogataea parapolymorpha DL-1]
Length = 1088
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L VL+ ED V Q + RMLK G VT+ DG A E MT I+
Sbjct: 951 LKVLIAEDNLVNQEVIKRMLKLEGITDVTMACDGIEASELMTEAID-------------- 996
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
N+ YDL+ MD QM +MDG AT+ R E TG PI+A TA N+
Sbjct: 997 ------NNETYDLVFMDVQMPNMDGLSATKYFR--EKLKYTG---PIVALTAFADQSNKD 1045
Query: 184 ECFNSGMDTFLNKP 197
+C +GM FL+KP
Sbjct: 1046 DCLKAGMSGFLSKP 1059
>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1104
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 26/133 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V +++ + +L LG V +G A+ A+
Sbjct: 851 LLLVEDNLVNRKVALSILDNLGFRTDAVSNGLEAISAL---------------------- 888
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
N P YDL+LMDCQM +DG +AT+ IR E+ + IPIIA TA A + +C
Sbjct: 889 --ENLP-YDLVLMDCQMPELDGYEATKRIRSAESRV-LNRGIPIIAMTAHAMAGDREKCI 944
Query: 187 NSGMDTFLNKPAQ 199
GMD +++KP +
Sbjct: 945 ACGMDDYISKPVE 957
>gi|427724830|ref|YP_007072107.1| histidine kinase [Leptolyngbya sp. PCC 7376]
gi|427356550|gb|AFY39273.1| histidine kinase [Leptolyngbya sp. PCC 7376]
Length = 811
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 32/155 (20%)
Query: 44 SSSCPVN-DDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102
++ PVN ++ +D + L L +L+ ED V Q++ + L+KLG + +G+ +E
Sbjct: 671 TAKIPVNTENKNPIDSE--LSTLKILIAEDNIVNQKVAVLTLQKLGYKADIANNGKEVIE 728
Query: 103 AMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEA 162
+ N +YDLILMD QM +DG + T IR +
Sbjct: 729 VI-------------------------NEQNYDLILMDVQMPELDGLQTTEWIR----QK 759
Query: 163 ETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G IIA TA A + +EC N GMD+FL KP
Sbjct: 760 YKGIQPKIIAITANAEARSIQECLNVGMDSFLTKP 794
>gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
gi|167653704|gb|EDR97833.1| response regulator receiver domain protein [Anaerostipes caccae DSM
14662]
Length = 811
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VLL ED + + I + +L+ G K+GE AV+
Sbjct: 681 LAGCRVLLAEDNELNREIAVELLRMAGITADCAKNGEEAVKKFL---------------- 724
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
N YDLILMD QM MDG +AT +IR + + G++IPIIA TA ++
Sbjct: 725 -------ENGEAYDLILMDVQMPVMDGYQATEIIRN--SGQKHGKTIPIIAMTANAFRED 775
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+ +GM+ L KP LL + E A+K H
Sbjct: 776 VMKSDEAGMNRHLAKPIDPELLYQTLAEEAAKKRH 810
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+ HN YD+ L+D ++ ++G + T+ +R + G II TA E
Sbjct: 583 DAHNREQDYDVCLIDWKLPDINGIEVTKRVRNI-----AGPDTTIIIITAYDWMSIEESA 637
Query: 186 FNSGMDTFLNKP 197
N+G D+FL KP
Sbjct: 638 LNTGADSFLAKP 649
>gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 764
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 26/131 (19%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED V Q + L++LG VTLV++G+ AV
Sbjct: 494 ILLAEDNPVNQDVARLNLERLGCRVTLVENGQQAVTVF---------------------- 531
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DL+LMDC+M MDG ATR IR LE + + ++ PIIA TA A + +
Sbjct: 532 ---QENRFDLVLMDCEMPIMDGYTATRTIRDLERQ-QGRRATPIIAVTAHALASHRNKAI 587
Query: 187 NSGMDTFLNKP 197
+GM+ FL+KP
Sbjct: 588 ATGMNDFLSKP 598
>gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
21756]
gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
21756]
Length = 614
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 71/154 (46%), Gaps = 31/154 (20%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G+ +LLVED AV + + ML+ G V DG A VEAM G
Sbjct: 488 GVRLLLVEDNAVNRELVRAMLEPFGVVVETANDGVAGVEAM----------------RQG 531
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+DL+LMD QM DG ATR IR LE G + PIIA TA V +
Sbjct: 532 ---------EFDLVLMDVQMPVKDGLTATREIRALEGA--RGAATPIIAMTANVLPEQVA 580
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217
C +GMD L KP + + ++E +AR S +
Sbjct: 581 NCLAAGMDDHLGKP----ISPSKLLEAVARWSGR 610
>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
Length = 1177
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EG VL+VED V Q++ + ML K G + +G+AA+E +
Sbjct: 906 EGRRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELLA----------------- 948
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YDL+LMDCQM + G +AT +R E A G+ P++A TA
Sbjct: 949 --------RSSYDLVLMDCQMPVLGGYEATGELRAREMSA-GGRRTPVVALTAHAATGER 999
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
+C +GMD +L+KP LA A+
Sbjct: 1000 EKCLAAGMDDYLSKPISRDRLAEAL 1024
>gi|392403459|ref|YP_006440071.1| integral membrane sensor hybrid histidine kinase [Turneriella parva
DSM 21527]
gi|390611413|gb|AFM12565.1| integral membrane sensor hybrid histidine kinase [Turneriella parva
DSM 21527]
Length = 832
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 69/145 (47%), Gaps = 29/145 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L VED AV Q + L+ LG ++L ++G EA+ L N
Sbjct: 708 LRILAVEDDAVNQVVITETLRSLGYEISLAENGR---EAVALAENKI------------- 751
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DLI MD QM M G +AT IR L G + I+A TA +A+N +
Sbjct: 752 ---------FDLIFMDVQMPEMSGIEATERIRALT----DGDRVAIVALTADSSAENRHK 798
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
CF +G+D FL KP L AA+V+
Sbjct: 799 CFAAGIDDFLTKPFSPQNLQAALVK 823
>gi|255941286|ref|XP_002561412.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586035|emb|CAP93776.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1025
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 36/182 (19%)
Query: 28 KPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKL 87
+P+ + N I+P ++ P L++LL ED V Q++ +R+L+K
Sbjct: 866 RPIDLWNGILPALGNRTTRTP----------SGYTRSLAILLAEDNDVNQKVAVRILEKF 915
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
VT+V++G AV+ K H+ YD+ILMD QM M
Sbjct: 916 NHNVTVVENGLQAVK--------EAKRHR-----------------YDVILMDVQMPVMG 950
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
G +AT IR+ E ++ PI+A TA + +C +GMD +L+KP + + I
Sbjct: 951 GFEATGNIRQYEKINGLPRT-PIVALTAHAMLGDRDKCIEAGMDDYLSKPLDSNRMMQTI 1009
Query: 208 VE 209
++
Sbjct: 1010 LK 1011
>gi|416015877|ref|ZP_11563343.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
[Pseudomonas syringae pv. glycinea str. B076]
gi|416026459|ref|ZP_11569908.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
[Pseudomonas syringae pv. glycinea str. race 4]
gi|320324907|gb|EFW80979.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
[Pseudomonas syringae pv. glycinea str. B076]
gi|320329273|gb|EFW85270.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
[Pseudomonas syringae pv. glycinea str. race 4]
Length = 645
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 78/170 (45%), Gaps = 43/170 (25%)
Query: 41 EGSSS------SCPVNDDVTGVDEKKVLEGL-------SVLLVEDQAVLQRIGIRMLKKL 87
EGS S PV+ DV+ VD K L L S+LLVED V + + ML+ L
Sbjct: 481 EGSGSVFTLQIPLPVSRDVS-VDIAKPLSVLDAHGKERSILLVEDNPVNRTVVQAMLRNL 539
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
G V + DG AV + A+ NH LILMDC++ MD
Sbjct: 540 GCKVDVAVDGAEAV------MKASAGNHA-------------------LILMDCRLPVMD 574
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G +ATR IR+L + IPIIA TA + C +GMD +L KP
Sbjct: 575 GYEATRRIRQLSGL----ERIPIIALTANALQGDRDACLQAGMDDYLAKP 620
>gi|392548097|ref|ZP_10295234.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas rubra ATCC
29570]
Length = 1300
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 38/174 (21%)
Query: 38 PQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97
PQ + ++SCP D L GL++L+ EDQ V Q I + +L GA V + +G
Sbjct: 931 PQPQQLNTSCPAQD--------SRLSGLTILVAEDQPVNQEIAVEILSFHGATVAVANNG 982
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
+ A+ A+ S +D++LMD QM MDG +ATR I +
Sbjct: 983 QEALNAV-------------------------QSTTFDIVLMDMQMPVMDGLQATRAIGQ 1017
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAAAIVET 210
L PI+A TA D+ + C ++GM + KP E+++A + T
Sbjct: 1018 LTNTVHP----PILAMTANAMQDDIQTCLDAGMVGHIAKPIDVENMVATILAHT 1067
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 43/153 (28%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
L+V+D A+ + + MLKK G L G+A +E + +N Q
Sbjct: 815 LVVDDNALAREVMAAMLKKFGIASKLFSSGDACIEYV--------RNQQ----------- 855
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
PH+D+ +D M DG I L A++ Q ALVTA RE
Sbjct: 856 ----PHFDIAFIDWHMPQKDGID---TIMELHAQSPASQ-------YALVTAYG-REL-- 898
Query: 188 SGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
G+ K Q+H++++ +++ I S F C
Sbjct: 899 -GL-----KDEQKHIISSILLKPI-NPSSVFDC 924
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 24/199 (12%)
Query: 5 KEQAETTSHPEKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEG 64
K+ T P+ + + L K +P N + + ++ +C + G ++ E
Sbjct: 911 KQNGFTAYFPKPMTTKDIFNLLTKCLPERNTLHSE---NTQTCTITKKPLGPNDIVWRED 967
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LL ED + Q + LKK+G V + A + L +
Sbjct: 968 IRILLAEDNQINQIVAATTLKKMGISVVDI---------------ATNGKEVLDYLDQKN 1012
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+E Y LILMDCQM MDG +AT +IR EA + +I IIA TA ++ +
Sbjct: 1013 TIEP-----YSLILMDCQMPVMDGYQATTLIRNNEAR-DKANAITIIAMTANAMTGDKTK 1066
Query: 185 CFNSGMDTFLNKPAQEHLL 203
C +SGMD +++KP + +L
Sbjct: 1067 CLDSGMDDYISKPIAQDIL 1085
>gi|367018940|ref|XP_003658755.1| hypothetical protein MYCTH_2294928 [Myceliophthora thermophila ATCC
42464]
gi|347006022|gb|AEO53510.1| hypothetical protein MYCTH_2294928 [Myceliophthora thermophila ATCC
42464]
Length = 1326
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 26/145 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LL ED V QR+ +++L+K VT+V +GE AVEA+
Sbjct: 1082 FEILLAEDNTVNQRLAVKILEKYHHVVTVVGNGEEAVEAV-------------------- 1121
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D+ILMD QM M G +AT IR E T Q PIIA TA + +
Sbjct: 1122 -----KRKKFDVILMDVQMPIMGGFEATGKIREYERSLGT-QRTPIIALTAHAMMGDREK 1175
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVE 209
C + MD +L+KP Q++ L I++
Sbjct: 1176 CIQAQMDEYLSKPLQQNHLIQTILK 1200
>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus str. Bath]
Length = 1177
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
EG VL+VED V Q++ + ML K G + +G+AA+E +
Sbjct: 906 EGRRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELLA----------------- 948
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YDL+LMDCQM + G +AT +R E A G+ P++A TA
Sbjct: 949 --------RSSYDLVLMDCQMPVLGGYEATGELRAREMSA-GGRRTPVVALTAHAATGER 999
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAI 207
+C +GMD +L+KP LA A+
Sbjct: 1000 EKCLAAGMDDYLSKPISRDRLAEAL 1024
>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf.
saccharolyticum K10]
Length = 885
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
GL L+VED + + I + + GA V +G+ AVEA
Sbjct: 756 GLRFLIVEDNDLNREIAVTLFSSFGAEVETAVNGKEAVEA-------------------- 795
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
E +DLILMD QM MDG +ATR+IR L + E G+ IPI+A TA ++++
Sbjct: 796 --FEASEPGFFDLILMDVQMPVMDGYEATRIIRSL--DREDGREIPILAMTANAFSEDKA 851
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213
+ GMD ++KP +VE I R
Sbjct: 852 KSMACGMDGHISKPID----LKEVVEKIER 877
>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 1670
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 41/194 (21%)
Query: 16 KLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAV 75
+L L LQ EF V + +IP A+ + V+ ++TG K +LLVED +
Sbjct: 1295 RLSLYAALQGEFNDV--QHMLIPDADVQDA---VDLELTGQSPK-------ILLVEDNEL 1342
Query: 76 LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135
Q++ RML+ +G V + +G A+EA+ S Y
Sbjct: 1343 NQQVARRMLEGMGLDVDVADNGRKALEAL-------------------------ESEPYS 1377
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195
L++MD QM MDG A+R+IR E +++PI+A TA + + F +GM+ L
Sbjct: 1378 LVIMDIQMPEMDGLTASRIIR----SDERYRNLPILAMTAHAMPGDREKSFEAGMNEHLT 1433
Query: 196 KPAQEHLLAAAIVE 209
KP L A+V+
Sbjct: 1434 KPIDPEELKRALVK 1447
>gi|423688271|ref|ZP_17663074.1| two component sensory histidine kinase [Vibrio fischeri SR5]
gi|371492774|gb|EHN68380.1| two component sensory histidine kinase [Vibrio fischeri SR5]
Length = 864
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 25/152 (16%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+EK L +L+VED V Q++ L G + +G+ AVE T
Sbjct: 735 NEKTSLNKEHILIVEDNLVNQKVASLFLGNSGYTFDIANNGQEAVEKFT----------- 783
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176
+S Y++ILMDC M DG AT+ IR++E + + + IPIIA TA
Sbjct: 784 -------------DSEAYNIILMDCMMPVKDGFTATKEIRKVE-KNQKRKKIPIIALTAS 829
Query: 177 VTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+ + +C+ SGMD F+ KP ++ +L I+
Sbjct: 830 ILDQDISKCYESGMDDFIAKPFKKEILLEKIM 861
>gi|345872861|ref|ZP_08824787.1| signal transduction histidine kinase with CheB and CheR activity
[Thiorhodococcus drewsii AZ1]
gi|343917831|gb|EGV28609.1| signal transduction histidine kinase with CheB and CheR activity
[Thiorhodococcus drewsii AZ1]
Length = 1876
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+++ G+ +LL ED + + + + +L G V +DG AVE AG
Sbjct: 1514 RRLHTGVRILLAEDNPINREVALELLSSTGLIVETAEDGVEAVEK-------AGTRD--- 1563
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
Y LILMD QM MDG ATR IR L AE PI+A TA
Sbjct: 1564 ---------------YALILMDVQMPRMDGLAATRAIRALPGWAER----PILAMTANAF 1604
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220
+++ + C GM F+ KP + +L AA++ ++R+ C
Sbjct: 1605 SEDRQACLAVGMQDFVAKPVEPAVLYAALLLWLSREPKAEPC 1646
>gi|422405756|ref|ZP_16482795.1| response regulator receiver:ATP-binding region, partial
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330880822|gb|EGH14971.1| response regulator receiver:ATP-binding region [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 636
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 78/170 (45%), Gaps = 43/170 (25%)
Query: 41 EGSSS------SCPVNDDVTGVDEKKVLEGL-------SVLLVEDQAVLQRIGIRMLKKL 87
EGS S PV+ DV+ VD K L L S+LLVED V + + ML+ L
Sbjct: 481 EGSGSVFTLQIPLPVSRDVS-VDIAKPLSVLDAHGKERSILLVEDNPVNRTVVQAMLRNL 539
Query: 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147
G V + DG AV + A+ NH LILMDC++ MD
Sbjct: 540 GCKVDVAVDGAEAV------MKASAGNHA-------------------LILMDCRLPVMD 574
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G +ATR IR+L + IPIIA TA + C +GMD +L KP
Sbjct: 575 GYEATRRIRQLSGL----ERIPIIALTANALQGDRDACLQAGMDDYLAKP 620
>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 788
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 26/143 (18%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L +L+ ED V G RML+K G VT KDG A++ +T
Sbjct: 661 LRILIAEDDPVSLLSGKRMLEKSGYSVTAAKDGLEALQFLT------------------- 701
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+DLILMD Q+ +MDG ATR IR A E SIPIIA TA ++ +
Sbjct: 702 ------EQDFDLILMDVQLPTMDGVDATRAIREGRA-GEDKASIPIIAMTAYAMTGDKEK 754
Query: 185 CFNSGMDTFLNKPAQEHLLAAAI 207
+GM+ +++KP + L I
Sbjct: 755 FLEAGMNDYISKPVEMETLKEVI 777
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,327,488,772
Number of Sequences: 23463169
Number of extensions: 130081328
Number of successful extensions: 382770
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 31439
Number of HSP's that attempted gapping in prelim test: 339832
Number of HSP's gapped (non-prelim): 41465
length of query: 230
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 92
effective length of database: 9,121,278,045
effective search space: 839157580140
effective search space used: 839157580140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 74 (33.1 bits)