BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026988
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 47/153 (30%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + + M+K+LG + + +G A+ A+
Sbjct: 11 ILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI---------------------- 48
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE------AEAETGQSI------------ 168
NS YDL+LMD M +DG KATR+IR E A E G I
Sbjct: 49 ---NSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRP 105
Query: 169 ----PIIAFTALVTADNERECFNSGMDTFLNKP 197
PIIA TA A++ EC+ +GMD+F++KP
Sbjct: 106 TNRLPIIAMTANTLAESSEECYANGMDSFISKP 138
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G VL+V+D + +++ LKK+G V+ V+ ++ EA+ L+ Q
Sbjct: 59 LRGKRVLVVDDNFISRKVATGKLKKMG--VSEVEQCDSGKEALRLVTEGL-----TQREE 111
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
GS P +D I MDCQM MDG +ATR IR++E G PIIA +
Sbjct: 112 QGS---VDKLP-FDYIFMDCQMPEMDGYEATREIRKVEKSY--GVRTPIIAVSGHDPGSE 165
Query: 182 E-RECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
E RE +GMD FL+K + A ++ I K H
Sbjct: 166 EARETIQAGMDAFLDKSLNQ---LANVIREIESKRH 198
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 26/149 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ +L+VED V Q + RML G + L DG+ A + +++ L
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFD-------------KVKEL--- 45
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
T +Y++I MD QM +DG +T++IRR + G + PI+A TA N +
Sbjct: 46 ----TSKGENYNMIFMDVQMPKVDGLLSTKMIRR-----DLGYTSPIVALTAFADDSNIK 96
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
EC SGM+ FL+KP + L + E A
Sbjct: 97 ECLESGMNGFLSKPIKRPKLKTILTEFCA 125
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 26/149 (17%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
+ +L+VED V Q + RML G + L DG+ A + +++ L
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFD-------------KVKEL--- 46
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
T +Y++I MD QM +DG +T++IRR + G + PI+A TA N +
Sbjct: 47 ----TSKGENYNMIFMDVQMPKVDGLLSTKMIRR-----DLGYTSPIVALTAFADDSNIK 97
Query: 184 ECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
EC SGM+ FL+KP + L + E A
Sbjct: 98 ECLESGMNGFLSKPIKRPKLKTILTEFCA 126
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ + +L+V+D + +R+ L LG DG A +N KNH
Sbjct: 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDA-------LNVLSKNH------- 173
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
D++L D M +MDG + T+ IR+L G ++P+I TA A+ +
Sbjct: 174 -----------IDIVLSDVNMPNMDGYRLTQRIRQL------GLTLPVIGVTANALAEEK 216
Query: 183 RECFNSGMDTFLNKP 197
+ C SGMD+ L+KP
Sbjct: 217 QRCLESGMDSCLSKP 231
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 31/136 (22%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ + +L+V+D + +R+ L LG DG A +N KNH
Sbjct: 7 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDA-------LNVLSKNH------- 52
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
D++L D M +MDG + T+ IR+L G ++P+I TA A+ +
Sbjct: 53 -----------IDIVLSDVNMPNMDGYRLTQRIRQL------GLTLPVIGVTANALAEEK 95
Query: 183 RECFNSGMDTFLNKPA 198
+ C SGMD+ L+KP
Sbjct: 96 QRCLESGMDSCLSKPV 111
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
LSVL+ ED + + + + L+K +T+V +G A++A +N Q
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY--------QNRQ-------- 54
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D+I+MD QM MDG +A IR E T ++ IIA TA T D++R
Sbjct: 55 ---------FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRA-SIIAITA-DTIDDDRP 103
Query: 185 CFNSGMDTFLNKP 197
+ +D +++KP
Sbjct: 104 --GAELDEYVSKP 114
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 29/131 (22%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLV+D AVL++I LKK G V ++G+ A+E ++
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--------------------- 43
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+P DLI++D M MDG V+++L+ E E + IP+I TA ++E
Sbjct: 44 --EFTP--DLIVLDIMMPVMDGF---TVLKKLQ-EKEEWKRIPVIVLTAKGGEEDESLAL 95
Query: 187 NSGMDTFLNKP 197
+ G + KP
Sbjct: 96 SLGARKVMRKP 106
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
LV + EA + M + ++ + S + N P DLIL+D + G
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP---GGSGI 62
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ I+ L+ E+ T + IP++ TA ++ +G D ++ KP L A I +
Sbjct: 63 QFIKHLKRESMT-RDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 213 RKSH 216
R S
Sbjct: 122 RISQ 125
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
LV + EA + M + ++ + S + N P DLIL+D + G
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWM---LPGGSGI 62
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ I+ L+ E+ T + IP++ TA ++ +G D ++ KP L A I +
Sbjct: 63 QFIKHLKRESMT-RDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 213 RKS 215
R S
Sbjct: 122 RIS 124
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 130 NSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG 189
N P +D++++D + DG + L++ E+G + P++ TAL + + N G
Sbjct: 44 NEP-FDVVILDIXLPVHDGWEI------LKSXRESGVNTPVLXLTALSDVEYRVKGLNXG 96
Query: 190 MDTFLNKPAQEHLLAAAIVETIARKS 215
D +L KP L A + I RKS
Sbjct: 97 ADDYLPKPFDLRELIARVRALIRRKS 122
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
+ +V D V+ + G I LE N+ DL+L+D DG +
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYR-PITAFSGEECLEALNATPPDLVLLDIXXEPXDGWE 64
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210
+ R++ + T + IP++ TA E + S ++ ++ KP H L AI
Sbjct: 65 T---LERIKTDPAT-RDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHV 120
Query: 211 IARKSHKFSCDE 222
+AR+ H + DE
Sbjct: 121 LARR-HSIAADE 131
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 31/151 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ VL+VED+ L + LKK V + DGE E M + +N
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGE---EGMYMALNEP------------- 46
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
+D++++D + DG + + +R E+G + P++ TAL + +
Sbjct: 47 ---------FDVVILDIMLPVHDGWEILKSMR------ESGVNTPVLMLTALSDVEYRVK 91
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215
N G D +L KP L A + I RKS
Sbjct: 92 GLNMGADDYLPKPFDLRELIARVRALIRRKS 122
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150
V +V+D E ++ ++ A G +Q S L DLILMD Q+ + G +
Sbjct: 4 VLIVEDNELNMKLFHDLLEAQG-YETLQTREGLSALSIARENKPDLILMDIQLPEISGLE 62
Query: 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210
T+ ++ E + IP++A TA +E G + +++KP +ET
Sbjct: 63 VTKWLK----EDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPIS----VVHFLET 114
Query: 211 IAR 213
I R
Sbjct: 115 IKR 117
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
YD +++D M M+G + +R ++A + P++ +A VT + R C +G F
Sbjct: 59 YDAVIVDLHMPGMNGLDMLKQLRVMQASGM--RYTPVVVLSADVTPEAIRACEQAGARAF 116
Query: 194 LNKPAQEHLLAAAIVETIA 212
L KP ++AA +++T+A
Sbjct: 117 LAKP----VVAAKLLDTLA 131
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 29/131 (22%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VLLV+D AVL++I LKK G V ++G+ A+E ++
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--------------------- 43
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+P DLI++ M MDG V+++L+ E E + IP+I TA ++E
Sbjct: 44 --EFTP--DLIVLXIMMPVMDGF---TVLKKLQ-EKEEWKRIPVIVLTAKGGEEDESLAL 95
Query: 187 NSGMDTFLNKP 197
+ G + KP
Sbjct: 96 SLGARKVMRKP 106
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
LV + EA + M + ++ + S + N P DLIL++ + G
Sbjct: 6 LVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLEWML---PGGSGI 62
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ I+ L+ E+ T + IP++ TA ++ +G D ++ KP L A I +
Sbjct: 63 QFIKHLKRESMT-RDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 213 RKS 215
R S
Sbjct: 122 RIS 124
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
D+IL+D M MDG V R+L+ + T + IP++ TAL + + SG FL
Sbjct: 48 DIILLDVMMPGMDGFT---VCRKLKDDPTT-RHIPVVLITALDGRGDRIQGLESGASDFL 103
Query: 195 NKPAQEHLLAAAIVETIARKSHKFSCDE--QAEAQDEK 230
KP + +L A V ++ R K DE Q EA +
Sbjct: 104 TKPIDDVMLFAR-VRSLTR--FKLVIDELRQREASGRR 138
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
D+IL+D M MDG V R+L+ + T + IP++ TAL + + SG FL
Sbjct: 47 DIILLDVMMPGMDGFT---VCRKLKDDPTT-RHIPVVLITALDGRGDRIQGLESGASDFL 102
Query: 195 NKPAQEHLLAAAIVETIARKSHKFSCDE--QAEAQDEK 230
KP + +L A V ++ R K DE Q EA +
Sbjct: 103 TKPIDDVMLFAR-VRSLTR--FKLVIDELRQREASGRR 137
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT 192
H DLIL+D + DG V++RL + ++PII TA T + + G D
Sbjct: 81 HPDLILLDLGLPDFDGGD---VVQRLRKNS----ALPIIVLTARDTVEEKVRLLGLGADD 133
Query: 193 FLNKPAQ-EHLLAAAIVETIARKSHKFS 219
+L KP + LLA V+ R S S
Sbjct: 134 YLIKPFHPDELLARVKVQLRQRTSESLS 161
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 91 VTLVKDGEAAVEAMTLMINAAG-KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
+ +V+D E + ++ G + ++N + P DLI+ D M MDG
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLMPEMDGY 67
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA---A 206
+ R L+ + + ++IP+I T L + G D F+ KP ++ +LA+
Sbjct: 68 A---LCRWLKGQPDL-RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKR 123
Query: 207 IVETIARKSHKFS 219
++ + R ++S
Sbjct: 124 LLSGVKRTEERYS 136
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+DQ+ ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D +M +MDG + + IR A + ++P++ TA +N
Sbjct: 50 ---------YGFVISDWKMPNMDGLELLKTIRADGAMS----ALPVLMVTAYAKKENIIA 96
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAQAGASGYVVKP 109
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D++ ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TAL +N
Sbjct: 50 ---------YGFVISDWMMPNMDGLELLKTIR-----ADGAMSALPVLMVTALAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
LV + EA + M + ++ + S + N P DLIL+ + G
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWML---PGGSGI 62
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ I+ L+ E+ T + IP++ TA ++ +G D + KP L A I +
Sbjct: 63 QFIKHLKRESMT-RDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 213 RKS 215
R S
Sbjct: 122 RIS 124
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152
LV + EA + M + ++ + S + N P DLIL+ + G +
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFI 65
Query: 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ +RR E+ T + IP++ TA ++ +G D + KP L A I +
Sbjct: 66 KHLRR---ESMT-RDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 213 RKS 215
R S
Sbjct: 122 RIS 124
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKA 151
L+ D E + + + N + +++ +G LE + D+I++D + +DG +
Sbjct: 5 LIVDDEKPISDI-IKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEV 63
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ IR+ S+PI+ +A + ++ G D ++ KP L A V+ +
Sbjct: 64 AKTIRK-------TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQAR-VKAL 115
Query: 212 ARKSH 216
R+S
Sbjct: 116 LRRSQ 120
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 37/163 (22%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
SVL+VED+ L +L+K G T+V DG AA
Sbjct: 6 SVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAA------------------------- 40
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
L + D++L+D + M G T V ++L A + S+P+I TA + ++
Sbjct: 41 LAEFDRAGADIVLLDLMLPGMSG---TDVCKQLRARS----SVPVIMVTARDSEIDKVVG 93
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQD 228
G D ++ KP L A I + R D+ +E D
Sbjct: 94 LELGADDYVTKPYSARELIARIRAVLRR-----GGDDDSEMSD 131
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A + L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDA-------------LNKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA A+N +
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEADAENIK 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 ALAQAGASGYVVKP 110
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKA 151
LV D E + A L N + +++ H G+ +E DLIL+D + + DG +
Sbjct: 6 LVVDDEKPI-ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEV 64
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
R +R+ +PII TA + ++ G D ++ KP L A + +
Sbjct: 65 CREVRK-------KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117
Query: 212 ARK 214
R+
Sbjct: 118 RRQ 120
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKA 151
LV D E + A L N + +++ H G+ +E DLIL+D + + DG +
Sbjct: 6 LVVDDEKPI-ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEV 64
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
R +R+ +PII TA + ++ G D ++ KP L A + +
Sbjct: 65 CREVRK-------KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117
Query: 212 ARK 214
R+
Sbjct: 118 RRQ 120
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGC 149
+ +V D + E +T+++ G + + + G+ L DL+L+D + M+G
Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAV--IGDGTQALTAVRELRPDLVLLDLMLPGMNGI 65
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
RV+R A++G +PI+ TA + SG D ++ KP
Sbjct: 66 DVCRVLR-----ADSG--VPIVMLTAKTDTVDVVLGLESGADDYIMKP 106
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY-DLILMDCQMGSMDGC 149
V +V+D + + I AG HQ+ + + + + H D+ ++D + DG
Sbjct: 3 VLVVEDNALLRHHLKVQIQDAG--HQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+IRR + S+PI+ TA + ++ E ++G D ++ KP
Sbjct: 61 S---LIRRWRS---NDVSLPILVLTARESWQDKVEVLSAGADDYVTKP 102
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGM 190
S YDLI ++ + DG + IR + + PI+ T + + NSG
Sbjct: 46 SNKYDLIFLEIILSDGDGWTLCKKIRNV-------TTCPIVYXTYINEDQSILNALNSGG 98
Query: 191 DTFLNKPAQEHLLAAAIVETIARKSHKFSCDE 222
D +L KP +L A V+ I R+ + + +E
Sbjct: 99 DDYLIKPLNLEILYAK-VKAILRRXNSYVNNE 129
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 86 KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI-QNLHHGSNLETHNSPHYDLILMDCQMG 144
K+ A + ++ D E E++ + + N ++ Q L+ L+ S DL++ D +
Sbjct: 3 KVSATLLIIDDDEVVRESLAAYLEDS--NFKVLQALNGLQGLQIFESEQPDLVICDLRXP 60
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
+DG + R IR +T PII + + E G +L KP ++
Sbjct: 61 QIDGLELIRRIR------QTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPLED---- 110
Query: 205 AAIVETIARKS 215
A++E R++
Sbjct: 111 LAVLEHSVRRA 121
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D++ ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTARAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 84 LKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI-QNLHHGSNLETHNSPHYDLILMDCQ 142
+ K+ A + ++ D E E++ + + N ++ Q L+ L+ S DL++ D +
Sbjct: 1 MHKVSATLLIIDDDEVVRESLAAYLEDS--NFKVLQALNGLQGLQIFESEQPDLVICDLR 58
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
+DG + R IR +T PII + + E G +L KP ++
Sbjct: 59 XPQIDGLELIRRIR------QTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLED-- 110
Query: 203 LAAAIVETIARKS 215
A++E R++
Sbjct: 111 --LAVLEHSVRRA 121
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D++ ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D +M +MDG + + IR A+ S +P++ TA +N
Sbjct: 50 ---------YGFVISDWRMPNMDGLELLKTIR-----ADGAMSALPVLMVTAHAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
D++++D M MDG I+ A A +I +IA T +T DN G +T
Sbjct: 56 DVVMLDLMMVGMDGFSICHRIKSTPATA----NIIVIAMTGALTDDNVSRIVALGAETCF 111
Query: 195 NKPAQEHLLAAAIVETIARK 214
KP LL I + + +K
Sbjct: 112 GKPLNFTLLEKTIKQLVEQK 131
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D++ ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 50 ---------YGFVISDWMMPNMDGLELLKTIR-----ADGAMSALPVLMVTARAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 98 EAAVEAMTLMINAAGKNHQIQN---LHHGSNLETHNSPH--------YDLILMDCQMGSM 146
EAA + + I +G + Q+ + L + SN HN + YD + G +
Sbjct: 177 EAAYKGCNVYIRISGYSTQVNDQWILTNRSN-AWHNLMYTVSVNLAGYDNVFYYFGEGQI 235
Query: 147 DGCKATRVIR--RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
T +++ R E TG+ P +A A ++ E +N G ++ KP EH
Sbjct: 236 CNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAG 295
Query: 205 AAIVETIARKSHKFSCDEQAEAQD 228
++ +A +K ++ + +D
Sbjct: 296 LTYIKDLAAGKYKLPWEDHMKIKD 319
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 98 EAAVEAMTLMINAAGKNHQIQN---LHHGSNLETHNSPH--------YDLILMDCQMGSM 146
EAA + + I +G + Q+ + L + SN HN + YD + G +
Sbjct: 177 EAAYKGCNVYIRISGYSTQVNDQWILTNRSN-AWHNLMYTVSVNLAGYDNVFYYFGEGQI 235
Query: 147 DGCKATRVIR--RLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
T +++ R E TG+ P +A A ++ E +N G ++ KP EH
Sbjct: 236 CNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAG 295
Query: 205 AAIVETIARKSHKFSCDEQAEAQD 228
++ +A +K ++ + +D
Sbjct: 296 LTYIKDLAAGKYKLPWEDHMKIKD 319
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIRAXXAMS----ALPVLMVTAEAKKENIIA 96
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAQAGASGYVVKP 109
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 46
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 47 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTAEAKKENIIA 93
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 94 AAQAGASGYVVKP 106
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 91 VTLVKDGEAAVEAMTLMINAAG-KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
V +V+D +A + + G + + + L G P DLI++D + DG
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP--DLIILDLGLPDGDGI 61
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ R +R+ A +P+I +A ++ ++G D +L+KP
Sbjct: 62 EFIRDLRQWSA-------VPVIVLSARSEESDKIAALDAGADDYLSKP 102
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 53
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 54 ---------YGFVISDWDMPNMDGLELLKTIRADGAMS----ALPVLMVTAYAKKENIIA 100
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 101 AAQAGASGYVVKP 113
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 32/110 (29%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+VED + +L K G V + GEAAVE ++
Sbjct: 8 ILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS--------------------- 46
Query: 127 ETHNSPHYDLILMDCQMG-SMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175
+ DLILMD ++G MDG + I+++ +P++ TA
Sbjct: 47 ---GGWYPDLILMDIELGEGMDGVQTALAIQQI-------SELPVVFLTA 86
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
T N P D I++D M +DG +R ++ +P+ +A + D+
Sbjct: 48 TENRP--DAIVLDINMPVLDGVSVVTALRAMD------NDVPVCVLSARSSVDDRVAGLE 99
Query: 188 SGMDTFLNKP 197
+G D +L KP
Sbjct: 100 AGADDYLVKP 109
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKA 151
L+ D E + + + N + +++ +G LE + D+I++ + +DG +
Sbjct: 5 LIVDDEKPISDI-IKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILXLMLPEIDGLEV 63
Query: 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
+ IR+ S+PI+ +A + ++ G D ++ KP L A V+ +
Sbjct: 64 AKTIRK-------TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQAR-VKAL 115
Query: 212 ARKSH 216
R+S
Sbjct: 116 LRRSQ 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 46
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 47 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMTTAEAKKENIIA 93
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 94 AAQAGASGYVVKP 106
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 53
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 54 ---------YGFVISDWDMPNMDGLELLKTIRADGAMS----ALPVLMVTARAKKENIIA 100
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 101 AAQAGASGYVVKP 113
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 53
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 54 ---------YGFVISDWDMPNMDGLELLKTIRADGAMS----ALPVLMVTAKAKKENIIA 100
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 101 AAQAGASGYVVKP 113
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D +M +MDG + + IR A+ S +P++ TA +N
Sbjct: 51 ---------YGFVISDWRMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 53
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 54 ---------YGFVISDWDMPNMDGLELLKTIRADGAMS----ALPVLMVTAQAKKENIIA 100
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 101 AAQAGASGYVVKP 113
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTAEAKKENVIA 96
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAQAGASGYVVKP 109
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ I+ D M +MDG + + IR A++ S +P++ TA +N
Sbjct: 50 ---------FGFIISDWNMPNMDGLELLKTIR-----ADSAMSALPVLMVTAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
++TH PH LI+ + M + G + L+ +T SIP+IA + TA E +
Sbjct: 49 VKTH--PH--LIITEANMPKISGMD---LFNSLKKNPQTA-SIPVIALSGRATAKEEAQL 100
Query: 186 FNSGMDTFLNKPAQEHLLAAAI 207
+ G F+ KP L+A I
Sbjct: 101 LDMGFIDFIAKPVNAIRLSARI 122
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ I+ D M +MDG + + IR A++ S +P++ TA +N
Sbjct: 51 ---------FGFIISDWNMPNMDGLELLKTIR-----ADSAMSALPVLMVTAEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTAEAKKENIIA 96
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAQAGASGYVVKP 109
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTAEAKKENIIA 97
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 98 AAQAGASGYVVKP 110
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTAEAKKENIIA 96
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAQAGASGYVVKP 109
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ I+ D M +MDG + + IR A++ S +P++ TA +N
Sbjct: 50 ---------FGFIICDWNMPNMDGLELLKTIR-----ADSAMSALPVLMVTAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGWVVKP 109
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
VL+ ED+A+++ ML++ G + DG+ AVE + LH
Sbjct: 16 VLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVE--------------LAELHKP-- 59
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
DL++MD +M DG A +E + + PI+ TA D
Sbjct: 60 ---------DLVIMDVKMPRRDGIDAA-------SEIASKRIAPIVVLTAFSQRDLVERA 103
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETIAR 213
++G +L KP L AI ++R
Sbjct: 104 RDAGAMAYLVKPFSISDLIPAIELAVSR 131
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
YDLI++D + +G + +R+ A T PI+ T V+ D ++C +G +
Sbjct: 52 YDLIILDIGLPIANGFEVXSAVRKPGANQHT----PIVILTDNVSDDRAKQCXAAGASSV 107
Query: 194 LNKPA 198
++K +
Sbjct: 108 VDKSS 112
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 51
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ TA +N
Sbjct: 52 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 97
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 98 AAAQAGASGYVVKP 111
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ T+ +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTSEAKKENIIA 97
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 98 AAQAGASGYVVKP 110
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ T +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTVEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG--------SNLETHNSPHYDLILMDCQ 142
+ LV+D +A + ++ + +H++ L G E NSP +LIL+D
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPRPNLILLDLN 70
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS 188
+ DG R + AE + + I L T+ NE + S
Sbjct: 71 LPKKDG-------REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIAS 109
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
Y ++ D M +MDG + + IR A + ++P++ T +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIRADGAMS----ALPVLMVTTEAKKENIIA 97
Query: 185 CFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 98 AAQAGASGYVVKP 110
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 27/124 (21%)
Query: 67 VLLVEDQAVLQRIGIRMLKK--LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+LLVED R+ +LK + + +++DG AA+ + G
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQ---------------QQG- 54
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
E NSP +LIL+D + DG R + AE + + I L T+ NE +
Sbjct: 55 --EYENSPRPNLILLDLNLPKKDG-------REVLAEIKQNPDLKRIPVVVLTTSHNEDD 105
Query: 185 CFNS 188
S
Sbjct: 106 VIAS 109
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 87 LGAGVTLVKDGEAAVEAMTL--MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144
+G V +V D AA M L +I AG + + +E + D++ MD M
Sbjct: 1 MGKRVLIVDD--AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMP 58
Query: 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204
M+G A + I +++ A+ II +A+ E +G F+ KP Q +
Sbjct: 59 EMNGIDAIKEIMKIDPNAK------IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVV 112
Query: 205 AAI 207
A+
Sbjct: 113 EAL 115
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ +++Q +G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL----------NKLQAGGYGF 52
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ N P+ MDG + + IR A+ S +P++ TA +N
Sbjct: 53 VISAWNMPN------------MDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE---CFNSGMDT 192
L+L+D + G ++++ E + P++ T T D++RE C++ G +
Sbjct: 62 LVLLDLNLPDXTGIDILKLVK----ENPHTRRSPVVILT---TTDDQREIQRCYDLGANV 114
Query: 193 FLNKPAQEHLLAAAI 207
++ KP A AI
Sbjct: 115 YITKPVNYENFANAI 129
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ A +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVIAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 30/164 (18%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
++LV+D ++ R G R L + G +V + A EA L
Sbjct: 8 IMLVDDHPIV-REGYRRLIERRPGYAVVAEAADAGEAY--------------------RL 46
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+P D+++MD + G +ATR IR+ + A I+ FT + + F
Sbjct: 47 YRETTP--DIVVMDLTLPGPGGIEATRHIRQWDGAAR------ILIFTMHQGSAFALKAF 98
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQAEAQDEK 230
+G ++ K + L AI E I S D E +E+
Sbjct: 99 EAGASGYVTKSSDPAELVQAI-EAILAGRRAMSPDIAQEIAEER 141
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A + L G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDA-------------LNKLQAGG 50
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ T +N
Sbjct: 51 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVTMEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ +++Q +G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL----------NKLQAGGYGF 52
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ N P+ MDG + + IR A+ S +P++ TA +N
Sbjct: 53 VISXWNMPN------------MDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
G + T N D+++ D +M + G R I+++ + +I T DN
Sbjct: 39 GLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPH------MAVIILTGHGDLDNA 92
Query: 183 RECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214
G +L KP L+ AI I RK
Sbjct: 93 ILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ +++Q +G
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL----------NKLQAGGYGF 53
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ N P+ MDG + + IR A+ S +P++ TA +N
Sbjct: 54 VISXWNMPN------------MDGLELLKTIR-----ADGAMSALPVLMVTAEAKKENII 96
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 97 AAAQAGASGYVVKP 110
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ L G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL-------------NKLQAGG 49
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
Y ++ D M +MDG + + IR A+ S +P++ A +N
Sbjct: 50 ---------YGFVISDWNMPNMDGLELLKTIR-----ADGAMSALPVLMVIAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGWVVKP 109
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 88 GAGVTLVKDGEAAVEAMTL--MINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145
G V +V D AA M L +I AG + + +E + D++ MD M
Sbjct: 1 GKRVLIVDD--AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPE 58
Query: 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA 205
M+G A + I +++ A+ II +A+ E +G F+ KP Q +
Sbjct: 59 MNGIDAIKEIMKIDPNAK------IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVE 112
Query: 206 AI 207
A+
Sbjct: 113 AL 114
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 31/139 (22%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L G +L+VED+ V + + LGA L DG A+E
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALE------------------- 45
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
L +P DL++ D M M+G K IR G P++ +A +
Sbjct: 46 ----LLGGFTP--DLMICDIAMPRMNGLKLLEHIR------NRGDQTPVLVISATENMAD 93
Query: 182 ERECFNSGMDTFLNKPAQE 200
+ G++ L KP ++
Sbjct: 94 IAKALRLGVEDVLLKPVKD 112
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 10/110 (9%)
Query: 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY---DLILMDCQMGSMD 147
V +V D V+ +T + + G N I G HY D++ + M MD
Sbjct: 39 VLIVDDSVFTVKQLTQIFTSEGFNI-IDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD 97
Query: 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
G I + A +I +AL ++C G TF+ KP
Sbjct: 98 GITCLSNIMEFDKNAR------VIMISALGKEQLVKDCLIKGAKTFIVKP 141
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+ ++++D + G + R I+ ET +I T L ++ + F +G D +
Sbjct: 44 FHVVVLDVXLPDYSGYEICRXIK------ETRPETWVILLTLLSDDESVLKGFEAGADDY 97
Query: 194 LNKPAQEHLLAAAIVETIAR 213
+ KP +L A + + R
Sbjct: 98 VTKPFNPEILLARVKRFLER 117
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD 191
P+ DLIL+D +M MDG + R A+ +T I +++ A+ + + G D
Sbjct: 59 PNVDLILLDIEMPVMDGMEFLR-----HAKLKTRAKICMLSSVAVSGSPHAARARELGAD 113
Query: 192 TFLNKPA 198
+ KP+
Sbjct: 114 GVVAKPS 120
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+ ++++D + G + R I+ ET +I T L ++ + F +G D +
Sbjct: 44 FHVVVLDVXLPDYSGYEICRXIK------ETRPETWVILLTLLSDDESVLKGFEAGADDY 97
Query: 194 LNKPAQEHLLAAAIVETIAR 213
+ KP +L A + + R
Sbjct: 98 VTKPFNPEILLARVKRFLER 117
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD 191
P+ DLIL++ +M MDG + R A+ +T I ++A A+ + + G D
Sbjct: 59 PNVDLILLNIEMPVMDGMEFLR-----HAKLKTRAKICMLASVAVSGSPHAARARELGAD 113
Query: 192 TFLNKPA 198
+ KP+
Sbjct: 114 GVVAKPS 120
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ +++Q +G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL----------NKLQAGGYGF 52
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ N P+ MDG + + IR A+ S +P++ A +N
Sbjct: 53 VISXWNMPN------------MDGLELLKTIR-----ADGAMSALPVLMVIAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGYVVKP 109
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 30/134 (22%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L L+V+D + ++RI +LK+L G V++ E V+A+ +++Q +G
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKEL--GFNNVEEAEDGVDAL----------NKLQAGGYGF 52
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNER 183
+ N P+ MDG + + IR A+ S +P++ A +N
Sbjct: 53 VISXWNMPN------------MDGLELLKTIR-----ADGAMSALPVLMVIAEAKKENII 95
Query: 184 ECFNSGMDTFLNKP 197
+G ++ KP
Sbjct: 96 AAAQAGASGWVVKP 109
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 115 HQIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAF 173
++I +G L+ S +YDL+++D +M + G + IR+ + +A+ II
Sbjct: 26 YEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAK------IILL 79
Query: 174 TA 175
TA
Sbjct: 80 TA 81
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
+ Q N ++ T P DL+L+D ++ MDG + +++R++ ++I +I
Sbjct: 29 QTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDGIE---ILKRMKV---IDENIRVII 80
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
TA D +E G T KP + A+ + + KS+
Sbjct: 81 MTAYGELDMAQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSN 124
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 25/90 (27%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
L+VL++ED+ + + + LKK+ G L DG+ AV ++ + G
Sbjct: 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVA----ILESCG----------- 48
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATR 153
H D+ + D QM MDG R
Sbjct: 49 ---------HVDIAICDLQMSGMDGLAFLR 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,358,820
Number of Sequences: 62578
Number of extensions: 240003
Number of successful extensions: 563
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 118
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)