BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026988
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SXL4|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2
Length = 1207
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 10/158 (6%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM-INAAG----- 112
+K LEG+ +LL ED VLQR+ ML+K+GA VT V DG+ AV+++ INA
Sbjct: 1038 QKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSINAQAPTEEH 1097
Query: 113 KNHQIQNLHHGSNLET--HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170
K+ + + + + ET NS YDLILMDCQM MDG +AT+ IRR AE T IPI
Sbjct: 1098 KSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRR--AEIGTELHIPI 1155
Query: 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208
+A TA + +E +C GMD +L KP L+ + I+
Sbjct: 1156 VALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTIL 1193
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 30/158 (18%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G +L+V+D V +R+ LKK GA V + G+ A+ + +
Sbjct: 939 KSLLTGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQI------------ 986
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI----PIIAF 173
PH +D MD QM MDG +ATR IR +E E + ++ PI+A
Sbjct: 987 -------------PHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAM 1033
Query: 174 TALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA V EC SGMD +++KP +E L ++ ++
Sbjct: 1034 TADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 1071
>sp|Q9P4U6|TCSB_EMENI Two-component system protein B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tcsB PE=1
SV=2
Length = 1065
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 27/143 (18%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
L+ + L+ ED V Q + +RML VT+VKDG+ A + + N+
Sbjct: 930 LKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVK------------ANM 977
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180
G +DLI MD QM ++DG ++TR+IR++ G S PI+A +A
Sbjct: 978 EEGK--------VFDLIFMDIQMPNLDGIESTRLIRQM------GCSAPIVALSAFSEDS 1023
Query: 181 NERECFNSGMDTFLNKPAQEHLL 203
N ++C NSGMD F++KP + L
Sbjct: 1024 NIKDCMNSGMDMFISKPIRRPAL 1046
>sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium
discoideum GN=dhkJ PE=3 SV=2
Length = 2062
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LL ED AV QR+ IR+L+K G V L ++G AV + L
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQL-------------------- 1770
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD QM G +AT IR+ E E G PIIA TA A + +C
Sbjct: 1771 -----RKFDLILMDVQMPHCGGFEATAQIRK--REHEQGIHTPIIAMTAHALARDRVKCL 1823
Query: 187 NSGMDTFLNKPAQEHLLAAAIVET--IARKSHKFSCDEQAEAQ 227
+GMD +++KP L A I + I++ + + +Q +AQ
Sbjct: 1824 EAGMDDYISKPINPDQLKAMIEKYLFISKSCNSYEQFQQLQAQ 1866
>sp|P48027|GACS_PSESY Sensor protein GacS OS=Pseudomonas syringae pv. syringae GN=gacS
PE=3 SV=1
Length = 907
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
+L+ +GA V V+ G AAV A+ +DL+LMD Q
Sbjct: 675 LLEDMGAEVVAVEGGYAAVNAV-------------------------QQEAFDLVLMDVQ 709
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M MDG +AT IR EAE S+PI+A TA A+ +R SGMD +L KP E
Sbjct: 710 MPGMDGRQATEAIRAWEAE-RNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQ 768
Query: 203 LAAAIVETIARKSHKFSCDEQAEA 226
LA +++ + + Q EA
Sbjct: 769 LAQVVLKWTGLALRNPAPERQNEA 792
>sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
Length = 1176
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 42/158 (26%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+V+D V +R+ LKK GA VT V+ G+AA+ +
Sbjct: 1037 ILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAML---------------------- 1074
Query: 127 ETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEAE----------------TGQSIP 169
PH +D MD QM MDG +ATR +R LE E + +P
Sbjct: 1075 ---KPPHNFDACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVP 1131
Query: 170 IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
I+A TA V EC GMD +++KP +E +L A+
Sbjct: 1132 ILAMTADVIQATHEECMKCGMDGYVSKPFEEEVLYTAV 1169
>sp|Q3S4A7|AHK5_ARATH Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=2 SV=1
Length = 922
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 47/154 (30%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + + M+K+LG + + +G VEA+T +
Sbjct: 780 ILLVEDNKINIMVAKSMMKQLGHTMDIANNG---VEAITAI------------------- 817
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE------AEAETGQSI------------ 168
NS YDL+LMD M +DG KATR+IR E A E G I
Sbjct: 818 ---NSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRP 874
Query: 169 ----PIIAFTALVTADNERECFNSGMDTFLNKPA 198
PIIA TA A++ EC+ +GMD+F++KP
Sbjct: 875 TNRLPIIAMTANTLAESSEECYANGMDSFISKPV 908
>sp|Q86CZ2|DHKK_DICDI Hybrid signal transduction histidine kinase K OS=Dictyostelium
discoideum GN=dhkK PE=1 SV=1
Length = 1213
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 31/183 (16%)
Query: 36 IIPQAEGSSSSCPVNDDVTGVDEKKVLEG-LSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94
I+P EG+ S ++ G K + + VL+ ED + QR+ ++ L+K+G
Sbjct: 1047 ILPLEEGTDQSMQQMNN--GARHKAFPQDCVKVLIAEDNIINQRVAVKFLEKIG------ 1098
Query: 95 KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRV 154
+ AG +++ LE HYDLI MD QM +DG + ++
Sbjct: 1099 -----------IKAEVAGNGNEV--------LEILERQHYDLIFMDFQMPILDGLRCSKT 1139
Query: 155 IRRLEAEAETGQ---SIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
IR E + + SI I TA + +++ CF+ GM+ F++KP Q L +AI I
Sbjct: 1140 IREFEQNHKWNRICPSIFICGLTANTMSTDKKRCFDHGMNHFISKPFQLEQLRSAIEMAI 1199
Query: 212 ARK 214
K
Sbjct: 1200 EHK 1202
>sp|P39928|SLN1_YEAST Osmosensing histidine protein kinase SLN1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SLN1 PE=1 SV=1
Length = 1220
Score = 67.4 bits (163), Expect = 8e-11, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 39 QAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDG 97
Q+ G+++S + T D+ K + +L+VED V Q + RML G + L DG
Sbjct: 1064 QSTGTATSS--RNIPTVKDDDKNETSVKILVVEDNHVNQEVIKRMLNLEGIENIELACDG 1121
Query: 98 EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR 157
+ A + + + T +Y++I MD QM +DG +T++IRR
Sbjct: 1122 QEAFDKVKEL--------------------TSKGENYNMIFMDVQMPKVDGLLSTKMIRR 1161
Query: 158 LEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
+ G + PI+A TA N +EC SGM+ FL+KP + L + E A
Sbjct: 1162 -----DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 1211
>sp|Q54SK5|DHKM_DICDI Hybrid signal transduction histidine kinase M OS=Dictyostelium
discoideum GN=dhkM PE=3 SV=1
Length = 2388
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 24/150 (16%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V +I + +L+K V L K+G+ A+E +
Sbjct: 2263 ILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERIK--------------------- 2301
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
++H+S +DLILMD M MDG +++ R+ E E + +PIIA TA T ++ C
Sbjct: 2302 QSHSS--FDLILMDIHMPVMDGITCSKLTRKFETEHGL-KHLPIIALTADATTGHKNLCL 2358
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
+G + F++KP LL + + + + K
Sbjct: 2359 EAGCNEFMSKPLDYALLISLLKKLVFNKDQ 2388
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQI 117
+ + L G VL+V+D + +++ LKK+G V+ V+ ++ EA+ L+
Sbjct: 979 DDEFLRGKRVLVVDDNFISRKVATGKLKKMG--VSEVEQCDSGKEALRLVTEGL-----T 1031
Query: 118 QNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
Q GS P +D I MDCQM MDG +ATR IR++E G PIIA +
Sbjct: 1032 QREEQGS---VDKLP-FDYIFMDCQMPEMDGYEATREIRKVEKSY--GVRTPIIAVSGHD 1085
Query: 178 TADNE-RECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
E RE +GMD FL+K + A ++ I K H
Sbjct: 1086 PGSEEARETIQAGMDAFLDKSLNQ---LANVIREIESKRH 1122
>sp|Q86AT9|DHKI_DICDI Hybrid signal transduction histidine kinase I OS=Dictyostelium
discoideum GN=dhkI-1 PE=3 SV=1
Length = 1736
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
VL+ ED + Q++ +L K G +T+ KDG+ A++ +H S
Sbjct: 1552 VLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALD-----------------FYHESK- 1593
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+ S YD ILMD QM + G +AT IR E EA G IPIIA TA ++ +
Sbjct: 1594 --NKSILYDCILMDIQMPILSGLEATCAIR--EIEANEGGHIPIIAVTAHAMKGDKEKFL 1649
Query: 187 NSGMDTFLNKPAQEHLLAAAIVETIAR 213
SG+D ++ KP LL I I +
Sbjct: 1650 ESGVDDYVTKPINPKLLYEVINTQICK 1676
>sp|P38889|SKN7_YEAST Transcription factor SKN7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKN7 PE=1 SV=1
Length = 622
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 45/189 (23%)
Query: 23 LQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIR 82
+ L+ +P N++ P A+ N+ VT + +G VLLVED AV ++ +
Sbjct: 349 VSLQLPNLPDQNSLTPNAQ--------NNTVT------LRKGFHVLLVEDDAVSIQLCSK 394
Query: 83 MLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142
L+K G V +V DG +A+ S LE + YDL+LMD
Sbjct: 395 FLRKYGCTVQVVSDGLSAI----------------------STLEKY---RYDLVLMDIV 429
Query: 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202
M ++DG AT ++R + E PIIA T + + GM+ L KP
Sbjct: 430 MPNLDGATATSIVRSFDNET------PIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDD 483
Query: 203 LAAAIVETI 211
L + ++ +
Sbjct: 484 LHSILIRYL 492
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
Length = 1036
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 42/158 (26%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+ +L G +L+V+D V R+ LKK GA V E+ ++A++L+
Sbjct: 884 RNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVC---AESGIKAISLL----------- 929
Query: 119 NLHHGSNLETHNSPH-YDLILMDCQMGSMDGCKATRVIRRLEAEA--------------- 162
PH +D MD QM MDG +ATR IR +E E
Sbjct: 930 -----------KPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENG 978
Query: 163 -ETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ 199
+T +P++A TA V EC GMD +++KP +
Sbjct: 979 NKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFE 1016
>sp|Q869S5|DOKA_DICDI Hybrid signal transduction protein dokA OS=Dictyostelium discoideum
GN=dokA PE=1 SV=1
Length = 1671
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 31/133 (23%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+L+ ED + ++ +R L+KLG + +G A+E +
Sbjct: 1520 ILVAEDNDINIKVVVRQLEKLGYTAIVGINGLKALEII---------------------- 1557
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
S LIL+DCQM MDG + ++R++E TGQ IPIIA TA D++ CF
Sbjct: 1558 ---GSFPICLILLDCQMPQMDGFTCSTILRQIEP---TGQRIPIIAMTA---NDSKDRCF 1608
Query: 187 NSGMDTFLNKPAQ 199
GMD +L+KP +
Sbjct: 1609 EVGMDDYLSKPVR 1621
>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B OS=Dictyostelium
discoideum GN=dhkB PE=1 SV=1
Length = 1969
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 32/138 (23%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED V +I ++LK G + +G AVE +
Sbjct: 1841 ILLVEDNFVNVKIFSKLLKDSGYIFDVAHNGVEAVECV---------------------- 1878
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAE-------AETGQSIPIIAFTALVTA 179
YDLILMDCQM MDG +AT IR LE ++ + I+A TA
Sbjct: 1879 ---KKGAYDLILMDCQMPEMDGFEATTAIRELEKSNLIESPPSKKHSHVVIVALTANSGY 1935
Query: 180 DNERECFNSGMDTFLNKP 197
++++C + GM+ FL KP
Sbjct: 1936 KDKQKCLSVGMNDFLQKP 1953
>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium
discoideum GN=dhkA PE=1 SV=1
Length = 2150
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 25/130 (19%)
Query: 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127
L+VED + +++ ++ KK+ ++ ++G A++ +T
Sbjct: 2028 LIVEDNELNRKVLAQLFKKIDWTISFAENGREALKEIT---------------------- 2065
Query: 128 THNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN 187
+D++ MDCQM +DG + T++IR E E + + I+A +A ++ ++C +
Sbjct: 2066 --GERCFDIVFMDCQMPVLDGFQTTKIIRSKERE-NNWKRMNIVALSAGSSSSFVQDCLD 2122
Query: 188 SGMDTFLNKP 197
SGMD+F+ KP
Sbjct: 2123 SGMDSFMGKP 2132
>sp|Q54W36|DHKH_DICDI Hybrid signal transduction histidine kinase H OS=Dictyostelium
discoideum GN=dhkH PE=3 SV=1
Length = 1378
Score = 57.4 bits (137), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 25/174 (14%)
Query: 34 NNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTL 93
N ++ + + VND ++ + L +++ ED V Q++ R L KLG
Sbjct: 1212 NPLLANYQKKRRNSVVNDTDIPLEMTGIRYPLKIMVAEDSLVNQKVACRFLTKLGY---- 1267
Query: 94 VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR 153
E + ++N Q + H N+E D+ILMD QM +DGC+AT
Sbjct: 1268 ------KKEEIIFVVNGQ------QAIDHIENVEM-----VDVILMDMQMPEVDGCEATT 1310
Query: 154 VIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207
IR TG II TA +++ +C SGM +L KP + +LA +
Sbjct: 1311 RIRM--RYPTTGPH--IIGLTANAFNEDKDKCLLSGMCHYLAKPVKMDILAVEL 1360
>sp|O14002|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak2 PE=3 SV=1
Length = 2310
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 22/159 (13%)
Query: 53 VTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAG 112
V +EK++L+ L+ ED + +++ + L LG V AAV+ + L+
Sbjct: 2167 VLSSEEKEILQKKYALIAEDNLIARKLLTKQLSNLGFQV------HAAVDGVELV----- 2215
Query: 113 KNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172
E Y +I D M DG +A IR E E IP+IA
Sbjct: 2216 -----------KMYEAKQFGFYSVIFADYHMPIRDGAEAVMDIRAYERENNCSTPIPVIA 2264
Query: 173 FTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211
TA + ++ C GM+ +L KP + L A+ E +
Sbjct: 2265 LTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREFV 2303
>sp|Q9P7Q7|MAK1_SCHPO Peroxide stress-activated histidine kinase mak1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak1 PE=3 SV=1
Length = 1639
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG 123
G SVLL ED + ++ R L+++G + DG VE
Sbjct: 1505 GFSVLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVE--------------------- 1543
Query: 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183
+ Y LILMD QM MDG +A IR+ E E + + +PI+A +A
Sbjct: 1544 -EWKREKPNFYSLILMDLQMPVMDGYQACNEIRKYELENDYPK-VPIVALSANALPHVVL 1601
Query: 184 ECFNSGMDTFLNKP 197
C +SG D++L KP
Sbjct: 1602 SCKDSGFDSYLAKP 1615
>sp|Q9ZTP3|EIN4_ARATH Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1
Length = 766
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 31/153 (20%)
Query: 57 DEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQ 116
+ +L GL + L +D V + + R+L+KLG VT V G + A+
Sbjct: 634 NSNSILRGLRITLADDDDVNRTVTKRLLEKLGCEVTAVSSGFECLNAL------------ 681
Query: 117 IQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP-IIAFTA 175
SN+E Y ++++D QM MDG + IR+ G P IIA TA
Sbjct: 682 -------SNVEM----SYRVVILDLQMPEMDGFEVAMKIRKF-----CGHHWPLIIALTA 725
Query: 176 LVTADNERE-CFNSGMDTFLNKPAQEHLLAAAI 207
T D+ RE C GM+ + KP H++A+ +
Sbjct: 726 -STEDHVRERCLQMGMNGMIQKPVLLHVMASEL 757
>sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase L OS=Dictyostelium
discoideum GN=dhkL PE=3 SV=1
Length = 1709
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 86 KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN----LETHNSPHYDLILMDC 141
KL V +V D ++ ++ M+ G ++ ++ G++ + + YD I +D
Sbjct: 1566 KLLGKVLVVDDNHINIQILSKMLQTVG--CEVDSVLSGADALAKINQSSGDSYDAIFLDI 1623
Query: 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
QM MDG + +R IR E + + + IIA TA V +++ +CF++GMD F++KP
Sbjct: 1624 QMPDMDGFQVSRKIREREKKFSLPR-VAIIATTANVFKEDQLKCFDAGMDDFISKP 1678
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 31/136 (22%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+ + +L+V+D + +R+ L LG DG A +N KNH
Sbjct: 823 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDA-------LNVLSKNH------- 868
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
D++L D M +MDG + T+ IR+L G ++P+I TA A+ +
Sbjct: 869 -----------IDIVLSDVNMPNMDGYRLTQRIRQL------GLTLPVIGVTANALAEEK 911
Query: 183 RECFNSGMDTFLNKPA 198
+ C SGMD+ L+KP
Sbjct: 912 QRCLESGMDSCLSKPV 927
>sp|P58662|RCSC_SALTY Sensor protein RcsC OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rcsC PE=3 SV=1
Length = 948
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 36/164 (21%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
+E SS+ P D ++ + +L+V+D + +R+ L LG DG
Sbjct: 805 SEALSSALPTTDKTADSNDD-----MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVD 859
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
A +N KN D++L D M +MDG + T+ IR+L
Sbjct: 860 A-------LNVLSKNA------------------IDIVLSDVNMPNMDGYRLTQRIRQL- 893
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203
G ++P++ TA A+ ++ C SGMD+ L+KP +L
Sbjct: 894 -----GLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVL 932
>sp|Q56128|RCSC_SALTI Sensor protein RcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2
Length = 948
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 36/159 (22%)
Query: 40 AEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99
+E SS+ P D ++ + +L+V+D + +R+ L LG DG
Sbjct: 805 SEALSSALPTTDKTADSNDD-----MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVD 859
Query: 100 AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159
A +N KN D++L D M +MDG + T+ IR+L
Sbjct: 860 A-------LNVLSKNA------------------IDIVLSDVNMPNMDGYRLTQRIRQL- 893
Query: 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198
G ++P++ TA A+ ++ C SGMD+ L+KP
Sbjct: 894 -----GLTLPVVGVTANALAEEKQRCLESGMDSCLSKPV 927
>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia
coli (strain K12) GN=barA PE=1 SV=1
Length = 918
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+DLILMD QM MDG +A +I +L + +T P+IA TA A + + +GM +
Sbjct: 712 FDLILMDIQMPDMDGIRACELIHQLPHQQQT----PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 194 LNKPAQEHLL 203
L KP +E L
Sbjct: 768 LAKPIEEERL 777
>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA
PE=1 SV=1
Length = 918
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+DLILMD QM MDG +A +I +L + +T P+IA TA A + + +GM +
Sbjct: 712 FDLILMDIQMPDMDGIRACELIHQLPHQQQT----PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 194 LNKPAQEHLL 203
L KP +E L
Sbjct: 768 LAKPIEEERL 777
>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O157:H7 GN=barA PE=3 SV=1
Length = 918
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+DLILMD QM MDG +A +I +L + +T P+IA TA A + + +GM +
Sbjct: 712 FDLILMDIQMPDMDGIRACELIHQLPHQQQT----PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 194 LNKPAQEHLL 203
L KP +E L
Sbjct: 768 LAKPIEEERL 777
>sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella
flexneri GN=barA PE=3 SV=1
Length = 918
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
+DLILMD QM MDG +A +I +L + +T P+IA TA A + + +GM +
Sbjct: 712 FDLILMDIQMPDMDGIRACELIHQLPHQRQT----PVIAVTAHAMAGQKEKLLGAGMSDY 767
Query: 194 LNKPAQEHLL 203
L KP +E L
Sbjct: 768 LAKPIEEERL 777
>sp|P0AEC4|ARCB_SHIFL Aerobic respiration control sensor protein ArcB OS=Shigella
flexneri GN=arcB PE=3 SV=1
Length = 778
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L+VLLVED + + +L+KLG V + G+AA
Sbjct: 523 LPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAA--------------------- 561
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
LE YDL+L+D Q+ M G +R + + + P++A TA V D
Sbjct: 562 ----LEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLP---PLVALTANVLKDK 614
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+ E N+GMD L+KP L A I
Sbjct: 615 Q-EYLNAGMDDVLSKPLSVPALTAMI 639
>sp|P0AEC3|ARCB_ECOLI Aerobic respiration control sensor protein ArcB OS=Escherichia coli
(strain K12) GN=arcB PE=1 SV=1
Length = 778
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L+VLLVED + + +L+KLG V + G+AA
Sbjct: 523 LPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAA--------------------- 561
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
LE YDL+L+D Q+ M G +R + + + P++A TA V D
Sbjct: 562 ----LEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLP---PLVALTANVLKDK 614
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+ E N+GMD L+KP L A I
Sbjct: 615 Q-EYLNAGMDDVLSKPLSVPALTAMI 639
>sp|P58363|ARCB_ECO57 Aerobic respiration control sensor protein ArcB OS=Escherichia coli
O157:H7 GN=arcB PE=3 SV=1
Length = 778
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
L L+VLLVED + + +L+KLG V + G+AA
Sbjct: 523 LPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAA--------------------- 561
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181
LE YDL+L+D Q+ M G +R + + + P++A TA V D
Sbjct: 562 ----LEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLP---PLVALTANVLKDK 614
Query: 182 ERECFNSGMDTFLNKPAQEHLLAAAI 207
+ E N+GMD L+KP L A I
Sbjct: 615 Q-EYLNAGMDDVLSKPLSVPALTAMI 639
>sp|A7N6S2|CQSS_VIBHB CAI-1 autoinducer sensor kinase/phosphatase CqsS OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=cqsS PE=1 SV=1
Length = 681
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 28/146 (19%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
++++V+D L++ +L+K G V +DG A+ A+
Sbjct: 564 TIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINAL--------------------- 602
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
N + DLILMD +M MDG +A+R IR + S+PIIA T + +
Sbjct: 603 ----NENNVDLILMDIEMPVMDGVEASRQIR---GSNKAYASVPIIAHTGDSSPITLDKI 655
Query: 186 FNSGMDTFLNKPAQEHLLAAAIVETI 211
+SGM F+ KPA ++ L I I
Sbjct: 656 GSSGMSDFIVKPADKNRLFDKIANWI 681
>sp|Q55E44|DHKE_DICDI Hybrid signal transduction histidine kinase E OS=Dictyostelium
discoideum GN=dhkE PE=3 SV=1
Length = 1699
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 67/132 (50%), Gaps = 25/132 (18%)
Query: 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN 125
+ L+V+D + +++ ++L+++ V+ ++G A++ +T
Sbjct: 1575 NALIVDDTELNRKVLAQLLRRMDWSVSFAENGIEALKEIT-------------------- 1614
Query: 126 LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC 185
+ +D+I MDCQM +DG + T+++R E E + + I+A +A ++ + C
Sbjct: 1615 ----SERCFDIIFMDCQMPILDGFETTKLLRLRELE-NNWKPLNIVALSADSSSSFGQVC 1669
Query: 186 FNSGMDTFLNKP 197
F+ GM+ +L KP
Sbjct: 1670 FDCGMNGYLGKP 1681
>sp|Q9KLK7|LUXQ_VIBCH Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=luxQ PE=1 SV=1
Length = 857
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 38/147 (25%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLVED I +K G V+ V DG A+E
Sbjct: 730 LRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIE---------------------- 767
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
L+ H+ YDL+LMD Q+ +DG + TR I+++ +P++ + TAD E
Sbjct: 768 ELKIHD---YDLVLMDNQLPYLDGVETTRTIKKV-------LHLPVVVYAC--TADGLEE 815
Query: 185 C----FNSGMDTFLNKPAQEHLLAAAI 207
F++G + L KP +E L A+
Sbjct: 816 TRQAFFHAGAEYVLVKPLKEQTLHKAL 842
>sp|Q54Q69|DHKG_DICDI Hybrid signal transduction histidine kinase G OS=Dictyostelium
discoideum GN=dhkG PE=3 SV=1
Length = 3432
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 30/137 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVT--LVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
L +L+VED + I +ML KLG L +G V+ KN +
Sbjct: 3304 LKILIVEDNEMNANIMFKMLAKLGIQCEPHLALNGLEGVKK--------AKNEE------ 3349
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182
YDLI+MD QM M G AT +IR+ E T + PI+A TA
Sbjct: 3350 -----------YDLIIMDIQMPVMCGLTATSLIRKHEG---TKKRTPIVAITASAMNGEM 3395
Query: 183 RECFNSGMDTFLNKPAQ 199
+ +G D +L+KP Q
Sbjct: 3396 SKALAAGCDDYLSKPLQ 3412
>sp|O14283|PRR1_SCHPO Transcription factor prr1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=prr1 PE=1 SV=2
Length = 539
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 31/131 (23%)
Query: 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL 126
+LLVED + +R+ I+ L V + DG AV NA G
Sbjct: 370 ILLVEDDELSRRMTIKFLTSFDCQVDVAVDGIGAVNKA----NAGG-------------- 411
Query: 127 ETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186
+DLILMD + ++DG T +IR+ + + PI+A T+ ++ ++ F
Sbjct: 412 -------FDLILMDFILPNLDGLSVTCLIRQYD------HNTPILAITSNISMNDAVTYF 458
Query: 187 NSGMDTFLNKP 197
N G+ L KP
Sbjct: 459 NHGVTDLLVKP 469
>sp|P87323|MCS4_SCHPO Response regulator mcs4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mcs4 PE=4 SV=1
Length = 522
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 66/171 (38%), Gaps = 47/171 (27%)
Query: 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNL 120
V+ ++VL+VED + Q+I +KK + KDG +EA
Sbjct: 358 VIPPINVLIVEDNIINQKILETFMKKRNISSEVAKDG---LEA----------------- 397
Query: 121 HHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETG-------QSIP---- 169
LE + LILMD Q+ +M G + T+ IRRLE G Q IP
Sbjct: 398 -----LEKWKKKSFHLILMDIQLPTMSGIEVTQEIRRLERLNAIGVGAPKLTQPIPEKDQ 452
Query: 170 -----------IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209
I+A TA + E +G + FL KP L I E
Sbjct: 453 LNENKFQSPVIIVALTASSLMADRNEALAAGCNDFLTKPVSLVWLEKKITE 503
>sp|P37599|CHEV_BACSU Chemotaxis protein CheV OS=Bacillus subtilis (strain 168) GN=cheV
PE=1 SV=1
Length = 303
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 30 VPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGA 89
+P II E S N G DE++ + L ++VED +L R+ LK+ A
Sbjct: 142 LPDYEKIIYDIESDSGVDTYNMHTEGFDERRTDKKL--IIVEDSPLLMRLLQDELKE--A 197
Query: 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGC 149
G + E EA ++N A ET S D+I+ D +M MDG
Sbjct: 198 GYNNIASFENGKEAYEYIMNLAEN-------------ETDLSKQIDMIITDIEMPKMDGH 244
Query: 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197
+ T++++ E +P++ F++L+T D G D ++KP
Sbjct: 245 RLTKLLK----ENPKSSDVPVMIFSSLITDDLRHRGEVVGADEQISKP 288
>sp|Q95PI2|DHKC_DICDI Hybrid signal transduction histidine kinase C OS=Dictyostelium
discoideum GN=dhkC PE=1 SV=1
Length = 1225
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 136 LILMDCQMGSMDGCKATRVIRRLEAEAET--GQSIPIIAFTALVTADNERECFNSGMDTF 193
+I MDC+M M+G + T++IR+ E E+ IIA TA + + + +CF++GM+ F
Sbjct: 1123 IIFMDCEMPKMNGFECTQLIRKREQESLCLLKDRKIIIALTAHINPEIQVKCFDAGMNDF 1182
Query: 194 LNKPAQEHLLAAAIVETIARK 214
++KP + L E I RK
Sbjct: 1183 ISKPFKPQCL-----ELILRK 1198
>sp|P18769|FRZE_MYXXA Gliding motility regulatory protein OS=Myxococcus xanthus GN=frzE
PE=1 SV=1
Length = 777
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 29/132 (21%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
L VLLV+D + + ++K LG V +DGE A ++QN
Sbjct: 659 LRVLLVDDSPIARATEGALVKALGHSVEEAQDGEEAY-------------VKVQN----- 700
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
N+ YDLIL D QM +DG R ++ A A IP+I ++L + +++R
Sbjct: 701 -----NT--YDLILTDVQMPKLDGFSLARRLKSTPAVAR----IPVIILSSLASPEDKRR 749
Query: 185 CFNSGMDTFLNK 196
++G D +L K
Sbjct: 750 GLDAGADAYLVK 761
>sp|Q54SP4|DHKD_DICDI Hybrid signal transduction histidine kinase D OS=Dictyostelium
discoideum GN=dhkD PE=2 SV=1
Length = 1546
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
K +L G+ ++LV+D + ML KLGA + + +A + +++
Sbjct: 1352 KNLLGGIQIMLVDDLEETTHLFSSMLYKLGA--KRIDTFQRVSDAYAFLCDSS------- 1402
Query: 119 NLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT 178
P D+IL D M DG R +R E + PIIA TA V+
Sbjct: 1403 ------------KPQPDIILSDLTMPFEDGYSMVRKLRDREKINTQNKKTPIIALTASVS 1450
Query: 179 ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCD 221
+ ++ + SG D +KP L+ +I+ I + + + D
Sbjct: 1451 SSDKEKVLKSGFDLHCSKPVNFLELSNSILTLIEKYNTTVNID 1493
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194
DLI+ DC M M G + +R E +IPI+ TA + + +G+ ++
Sbjct: 614 DLIVTDCMMPRMSGDEMVEQLR----SDEQFDNIPILLLTAKADENLRIKLLQNGVSDYV 669
Query: 195 NKPAQEHLLAAAIVETIA-RKSHKFSCDEQAEA 226
NKP L A +V + +K+ +F +E + A
Sbjct: 670 NKPFSSEELVARVVNLMTMKKAKQFLQEELSSA 702
>sp|Q9KM66|CQSS_VIBCH CAI-1 autoinducer sensor kinase/phosphatase CqsS OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=cqsS PE=1 SV=1
Length = 686
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQ 118
+K++E L L ++ + R I + K LV D ++ T ++ + +++
Sbjct: 539 RKIIERL--LFEQESLSMNRNVIPLQKSRHERRILVVDDNQSIRTFTAIL-LEQQGYEVV 595
Query: 119 NLHHGSNLETH-NSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177
+ GS + H S + DL+LMD +M ++ G +ATR+IR E E ++IPII +
Sbjct: 596 QANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRNSEHEY---KNIPIIGY---- 648
Query: 178 TADNERECF----NSGMDTFLNKPAQEHLL 203
T DN + SGM+ F+ KPA +L
Sbjct: 649 TGDNSPKTLALVQTSGMNDFIVKPADRDVL 678
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
VD + LE +++ + + R +R ++ L A D EA + ++ AG H
Sbjct: 434 VDAPEELESSNIIAFSNPFLRHRARVRSMRMLVA-----DDHEANRMVLQRLLEKAG--H 486
Query: 116 QIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
++ ++ L+ YD +++D M M+G + +R ++A + P++ +
Sbjct: 487 KVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGM--RYTPVVVLS 544
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
A VT + R C +G FL KP +LAA +++T+A
Sbjct: 545 ADVTPEAIRACEQAGARAFLAKP----VLAAKLLDTLA 578
>sp|Q8D5Z6|LUXQ_VIBVU Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus
(strain CMCP6) GN=luxQ PE=3 SV=1
Length = 857
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+GL VLLVED I +K V V+DG A+E + K H
Sbjct: 732 QGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKL--------KEHA------ 777
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADN 181
+DLILMD Q+ M G +ATR IR ET + PI A TA
Sbjct: 778 -----------FDLILMDNQLPKMGGIEATREIR------ETLKLGTPIYACTADAQEST 820
Query: 182 ERECFNSGMDTFLNKPAQE 200
++E ++G + + KP +E
Sbjct: 821 KQEFLSAGANRVIVKPIKE 839
>sp|Q7MD16|LUXQ_VIBVY Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus
(strain YJ016) GN=luxQ PE=3 SV=1
Length = 857
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHH 122
+GL VLLVED I +K V V+DG A+E + K H
Sbjct: 732 QGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKL--------KEHA------ 777
Query: 123 GSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADN 181
+DLILMD Q+ M G +ATR IR ET + PI A TA
Sbjct: 778 -----------FDLILMDNQLPKMGGIEATREIR------ETLKLGTPIYACTADAQEST 820
Query: 182 ERECFNSGMDTFLNKPAQE 200
++E ++G + + KP +E
Sbjct: 821 KQEFLSAGANRVIVKPIKE 839
>sp|Q02540|COPR_PSEUB Transcriptional activator protein CopR OS=Pseudomonas syringae pv.
tomato GN=copR PE=1 SV=1
Length = 227
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193
YDL+++D M +DG + VIRRL GQ +P++ TA D+ + G D +
Sbjct: 45 YDLLILDVMMPGLDGWE---VIRRLRT---AGQPVPVLFLTARDGVDDRVKGLELGADDY 98
Query: 194 LNKP-AQEHLLAAAIVETIARKSHKFSC 220
L KP A LLA V T+ R+
Sbjct: 99 LVKPFALSELLAR--VRTLLRRGSSLQV 124
>sp|Q01473|RCAC_FREDI Protein RcaC OS=Fremyella diplosiphon GN=rcaC PE=3 SV=2
Length = 651
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124
+ +LLVED VL ++ + L V +VKDGE +GS
Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMG-------------------WTYGS 41
Query: 125 NLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184
E YDLI++D + ++DG + +R A+ G ++PI+ TA + +
Sbjct: 42 TFE------YDLIILDIMLPNLDGIS---LCKRFRAQ---GYTVPILLLTAQDNITAKVQ 89
Query: 185 CFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216
++G D ++ KP L A I + R S+
Sbjct: 90 GLDAGADDYVVKPFDPIELIARIRALLRRGSN 121
>sp|Q9HUI3|ARUS_PSEAE Sensor histidine kinase AruS OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=aruS PE=3
SV=1
Length = 998
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLH 121
+ L VLLVED A+ + + +L++ G V L +D
Sbjct: 747 VSALEVLLVEDVALNREVAQGLLERDGHRVMLAEDA------------------------ 782
Query: 122 HGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRR-LEAEAETGQSIPIIAFTALVTAD 180
G L +DLIL+D + M G + IRR L+ ++ PI AFTA + D
Sbjct: 783 -GPALALCRQRRFDLILLDMHLPGMAGLELCAGIRRQLDG---LNRATPIFAFTASIQPD 838
Query: 181 NERECFNSGMDTFLNKPAQEHLLAAAIVE 209
R F +GM L KP + L A+ E
Sbjct: 839 MVRRYFAAGMQGVLGKPLRMDELRRALGE 867
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 56 VDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115
VD + LE +++ + + R +R ++ L A D EA + ++ AG H
Sbjct: 434 VDAPEELESSNIIAFSNPFLRHRARVRSMRMLVA-----DDHEANRMVLQRLLEKAG--H 486
Query: 116 QIQNLHHGSN-LETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174
++ ++ L+ YD +++D M M+G + +R ++A + P++ +
Sbjct: 487 KVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGM--RYTPVVVLS 544
Query: 175 ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212
A VT + R C +G FL KP ++AA +++T+A
Sbjct: 545 ADVTPEAIRACEQAGARAFLAKP----VVAAKLLDTLA 578
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,032,985
Number of Sequences: 539616
Number of extensions: 3232462
Number of successful extensions: 7301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 7053
Number of HSP's gapped (non-prelim): 327
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)