Query 026988
Match_columns 230
No_of_seqs 201 out of 2045
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 7.9E-24 1.7E-28 176.7 16.6 121 65-216 1-121 (229)
2 PRK11091 aerobic respiration c 99.9 4.3E-22 9.3E-27 192.3 19.1 172 1-214 473-646 (779)
3 PRK11466 hybrid sensory histid 99.9 4.9E-22 1.1E-26 194.6 19.1 171 1-214 630-801 (914)
4 PRK10841 hybrid sensory kinase 99.9 1.1E-21 2.5E-26 192.3 21.4 121 63-214 800-920 (924)
5 PRK15347 two component system 99.9 1.4E-21 2.9E-26 191.3 20.6 185 1-212 582-811 (921)
6 TIGR02956 TMAO_torS TMAO reduc 99.9 8.6E-22 1.9E-26 193.7 18.7 172 1-213 651-823 (968)
7 PRK11107 hybrid sensory histid 99.9 1.1E-20 2.3E-25 184.9 20.2 123 63-214 666-788 (919)
8 PRK09959 hybrid sensory histid 99.9 1.1E-20 2.3E-25 190.0 18.6 172 1-213 904-1076(1197)
9 PF00072 Response_reg: Respons 99.8 7.4E-20 1.6E-24 134.7 15.0 111 67-208 1-112 (112)
10 COG4566 TtrR Response regulato 99.8 2.8E-20 6.1E-25 147.3 13.3 122 65-217 5-126 (202)
11 COG2204 AtoC Response regulato 99.8 4.3E-20 9.3E-25 166.3 16.2 123 64-217 4-126 (464)
12 COG4753 Response regulator con 99.8 9.5E-20 2.1E-24 163.9 14.3 118 65-213 2-122 (475)
13 COG3437 Response regulator con 99.8 1.3E-19 2.8E-24 156.3 13.1 124 63-214 13-136 (360)
14 KOG0519 Sensory transduction h 99.8 2E-19 4.3E-24 173.3 15.1 126 58-212 660-785 (786)
15 COG4565 CitB Response regulato 99.8 3.9E-19 8.6E-24 143.3 13.5 121 65-216 1-123 (224)
16 PRK13837 two-component VirA-li 99.8 9.9E-19 2.1E-23 170.2 18.6 172 1-214 643-815 (828)
17 COG0784 CheY FOG: CheY-like re 99.8 8.3E-18 1.8E-22 126.8 16.8 119 63-212 4-125 (130)
18 COG3706 PleD Response regulato 99.8 3.3E-18 7.1E-23 153.0 15.4 131 63-222 131-261 (435)
19 COG2197 CitB Response regulato 99.8 6.1E-18 1.3E-22 139.7 15.8 119 65-214 1-121 (211)
20 PRK13557 histidine kinase; Pro 99.8 2.2E-17 4.9E-22 151.9 18.4 173 1-214 362-536 (540)
21 PRK10046 dpiA two-component re 99.8 3.2E-17 7E-22 136.2 16.6 119 64-213 4-124 (225)
22 PLN03029 type-a response regul 99.8 4.7E-17 1E-21 135.4 15.8 142 63-213 7-148 (222)
23 PRK10816 DNA-binding transcrip 99.7 1.1E-16 2.3E-21 131.5 16.8 119 65-214 1-119 (223)
24 PRK11173 two-component respons 99.7 1.3E-16 2.9E-21 132.5 17.0 119 64-214 3-121 (237)
25 PRK09836 DNA-binding transcrip 99.7 1.6E-16 3.6E-21 130.7 17.0 119 65-214 1-119 (227)
26 PRK10529 DNA-binding transcrip 99.7 2E-16 4.3E-21 129.9 17.1 118 65-214 2-119 (225)
27 PRK10643 DNA-binding transcrip 99.7 3.1E-16 6.6E-21 128.0 17.0 119 65-214 1-119 (222)
28 PRK09468 ompR osmolarity respo 99.7 4.3E-16 9.2E-21 129.4 17.0 120 64-214 5-124 (239)
29 PRK10766 DNA-binding transcrip 99.7 5.8E-16 1.2E-20 126.8 16.7 118 65-214 3-120 (221)
30 PRK10336 DNA-binding transcrip 99.7 6E-16 1.3E-20 126.1 16.7 119 65-214 1-119 (219)
31 PRK10161 transcriptional regul 99.7 7.8E-16 1.7E-20 126.9 16.8 120 65-213 3-122 (229)
32 PRK11083 DNA-binding response 99.7 8.5E-16 1.8E-20 125.8 16.9 120 64-214 3-122 (228)
33 PRK10840 transcriptional regul 99.7 6E-16 1.3E-20 127.4 16.0 122 63-215 2-128 (216)
34 COG3947 Response regulator con 99.7 9.5E-17 2.1E-21 134.9 10.9 119 65-216 1-119 (361)
35 PRK10701 DNA-binding transcrip 99.7 9.2E-16 2E-20 127.6 16.8 117 66-214 3-119 (240)
36 PRK13856 two-component respons 99.7 9.8E-16 2.1E-20 127.8 16.6 117 66-214 3-120 (241)
37 TIGR03787 marine_sort_RR prote 99.7 1.4E-15 2.9E-20 125.1 16.9 118 66-214 2-121 (227)
38 TIGR02154 PhoB phosphate regul 99.7 1.2E-15 2.6E-20 124.6 16.5 121 65-214 3-123 (226)
39 PRK11517 transcriptional regul 99.7 1.4E-15 2.9E-20 124.5 16.8 118 65-214 1-118 (223)
40 PRK10955 DNA-binding transcrip 99.7 1.5E-15 3.3E-20 124.9 16.5 117 65-214 2-118 (232)
41 PRK10430 DNA-binding transcrip 99.7 1.3E-15 2.7E-20 127.7 16.2 117 65-210 2-120 (239)
42 COG4567 Response regulator con 99.7 6.7E-16 1.5E-20 118.2 12.3 114 66-210 11-124 (182)
43 CHL00148 orf27 Ycf27; Reviewed 99.7 2.7E-15 5.8E-20 124.1 17.0 119 64-214 6-124 (240)
44 TIGR01387 cztR_silR_copR heavy 99.7 3.1E-15 6.7E-20 121.7 16.1 118 67-215 1-118 (218)
45 PRK09958 DNA-binding transcrip 99.7 3.2E-15 6.9E-20 120.8 16.1 120 65-215 1-121 (204)
46 TIGR02875 spore_0_A sporulatio 99.7 3.8E-15 8.2E-20 126.2 16.5 121 64-213 2-124 (262)
47 PRK15115 response regulator Gl 99.7 3.5E-15 7.6E-20 135.7 16.0 120 64-214 5-124 (444)
48 PRK10923 glnG nitrogen regulat 99.7 5.8E-15 1.3E-19 135.2 17.1 119 64-213 3-121 (469)
49 PRK09483 response regulator; P 99.6 7.5E-15 1.6E-19 119.7 16.0 120 65-215 2-123 (217)
50 PRK11361 acetoacetate metaboli 99.6 5.7E-15 1.2E-19 134.7 17.0 120 64-214 4-123 (457)
51 PRK10365 transcriptional regul 99.6 4.6E-15 1E-19 134.6 15.3 120 63-213 4-123 (441)
52 PRK14084 two-component respons 99.6 1.1E-14 2.3E-19 122.0 16.1 116 65-213 1-118 (246)
53 PRK09935 transcriptional regul 99.6 1.8E-14 3.9E-19 116.5 16.6 120 64-214 3-124 (210)
54 PRK09581 pleD response regulat 99.6 2.9E-15 6.3E-20 135.1 12.2 122 62-213 153-274 (457)
55 PRK10360 DNA-binding transcrip 99.6 2.6E-14 5.6E-19 114.8 15.3 116 65-214 2-119 (196)
56 PRK10710 DNA-binding transcrip 99.6 4.5E-14 9.8E-19 116.7 17.1 118 65-214 11-128 (240)
57 PRK15479 transcriptional regul 99.6 4.5E-14 9.8E-19 115.0 16.8 119 65-214 1-119 (221)
58 TIGR02915 PEP_resp_reg putativ 99.6 1.6E-14 3.4E-19 131.5 15.4 114 67-213 1-119 (445)
59 PRK09390 fixJ response regulat 99.6 3.6E-14 7.8E-19 113.2 15.3 120 64-214 3-122 (202)
60 TIGR01818 ntrC nitrogen regula 99.6 2.1E-14 4.5E-19 131.3 15.7 116 67-213 1-116 (463)
61 PRK11697 putative two-componen 99.6 4.1E-14 8.8E-19 117.7 15.3 115 65-213 2-118 (238)
62 PRK12555 chemotaxis-specific m 99.6 4.5E-14 9.7E-19 124.3 15.3 117 65-213 1-130 (337)
63 PRK13435 response regulator; P 99.6 1.7E-13 3.8E-18 105.5 15.1 121 62-217 3-125 (145)
64 PRK10100 DNA-binding transcrip 99.6 7.8E-14 1.7E-18 115.6 14.0 117 63-215 9-129 (216)
65 PRK13558 bacterio-opsin activa 99.6 6.5E-14 1.4E-18 133.3 14.6 119 64-213 7-127 (665)
66 PRK10610 chemotaxis regulatory 99.6 6.4E-13 1.4E-17 97.3 16.5 122 63-213 4-126 (129)
67 PRK09581 pleD response regulat 99.5 2E-13 4.3E-18 123.2 16.6 119 66-213 4-122 (457)
68 PRK00742 chemotaxis-specific m 99.5 2.3E-13 5E-18 120.6 16.2 118 63-212 2-132 (354)
69 PRK15369 two component system 99.5 4.4E-13 9.5E-18 107.5 16.1 121 63-214 2-124 (211)
70 PRK11475 DNA-binding transcrip 99.5 2.6E-13 5.6E-18 111.8 13.3 109 77-216 3-118 (207)
71 COG3707 AmiR Response regulato 99.5 1.7E-13 3.8E-18 109.3 11.2 126 63-220 4-130 (194)
72 PRK10651 transcriptional regul 99.5 1.1E-12 2.3E-17 106.2 16.0 120 64-214 6-127 (216)
73 PRK10403 transcriptional regul 99.5 1E-12 2.2E-17 106.1 15.9 119 65-214 7-127 (215)
74 PRK15411 rcsA colanic acid cap 99.5 6.1E-13 1.3E-17 109.6 14.4 119 65-215 1-125 (207)
75 COG2201 CheB Chemotaxis respon 99.5 1.2E-12 2.6E-17 114.3 14.8 103 65-199 2-108 (350)
76 PRK09191 two-component respons 99.5 3.3E-12 7.1E-17 107.6 15.5 117 64-214 137-255 (261)
77 cd00156 REC Signal receiver do 99.4 2.3E-11 5E-16 85.2 13.0 112 68-210 1-112 (113)
78 PRK10693 response regulator of 99.3 1.7E-11 3.7E-16 106.5 13.0 91 93-214 2-93 (303)
79 PRK15029 arginine decarboxylas 99.3 3.7E-11 8E-16 114.9 13.7 114 65-210 1-130 (755)
80 PRK10618 phosphotransfer inter 99.2 2.4E-10 5.2E-15 112.1 12.1 97 1-143 640-737 (894)
81 COG3279 LytT Response regulato 99.1 9E-10 2E-14 92.9 11.6 116 65-213 2-119 (244)
82 PRK11107 hybrid sensory histid 98.7 3.1E-07 6.8E-12 90.3 15.2 164 1-211 486-650 (919)
83 COG3706 PleD Response regulato 98.4 6.4E-07 1.4E-11 80.9 5.9 91 89-212 13-103 (435)
84 PF06490 FleQ: Flagellar regul 98.1 5.8E-05 1.3E-09 55.8 9.8 106 66-210 1-107 (109)
85 smart00448 REC cheY-homologous 97.9 0.00013 2.8E-09 43.4 7.7 55 65-144 1-55 (55)
86 PRK02261 methylaspartate mutas 97.6 0.0079 1.7E-07 46.3 14.9 120 63-213 2-136 (137)
87 cd02071 MM_CoA_mut_B12_BD meth 97.5 0.0067 1.5E-07 45.5 13.1 107 71-208 10-121 (122)
88 PF03709 OKR_DC_1_N: Orn/Lys/A 97.4 0.0013 2.7E-08 49.1 8.9 105 77-212 6-113 (115)
89 TIGR00640 acid_CoA_mut_C methy 97.1 0.043 9.4E-07 41.9 14.1 111 71-212 13-128 (132)
90 cd02067 B12-binding B12 bindin 96.5 0.075 1.6E-06 39.4 11.1 94 71-196 10-109 (119)
91 COG4999 Uncharacterized domain 96.3 0.034 7.4E-07 41.4 7.8 113 61-207 8-121 (140)
92 TIGR01501 MthylAspMutase methy 96.2 0.22 4.7E-06 38.2 12.4 111 71-212 12-133 (134)
93 PRK15399 lysine decarboxylase 96.0 0.1 2.3E-06 50.4 12.1 115 65-212 1-122 (713)
94 PRK15400 lysine decarboxylase 95.8 0.13 2.8E-06 49.8 11.5 115 65-212 1-122 (714)
95 cd02072 Glm_B12_BD B12 binding 95.1 0.92 2E-05 34.5 12.1 106 72-208 11-127 (128)
96 TIGR03815 CpaE_hom_Actino heli 94.4 0.24 5.2E-06 43.3 8.3 68 132-211 18-86 (322)
97 COG2185 Sbm Methylmalonyl-CoA 94.2 2 4.4E-05 33.2 12.8 120 63-213 11-139 (143)
98 PF02310 B12-binding: B12 bind 94.0 0.65 1.4E-05 34.1 8.9 93 72-196 12-111 (121)
99 cd02070 corrinoid_protein_B12- 93.9 1.4 3E-05 35.9 11.5 100 65-196 83-191 (201)
100 PRK09426 methylmalonyl-CoA mut 93.5 2.7 5.8E-05 41.1 14.3 120 62-212 580-708 (714)
101 cd04728 ThiG Thiazole synthase 93.1 4.4 9.6E-05 34.2 13.1 57 149-212 164-225 (248)
102 cd02069 methionine_synthase_B1 93.0 1.9 4E-05 35.7 10.8 101 65-196 89-201 (213)
103 PRK00208 thiG thiazole synthas 92.9 4.7 0.0001 34.1 13.1 57 149-212 164-225 (250)
104 PF02254 TrkA_N: TrkA-N domain 90.8 4.8 0.0001 29.1 10.7 56 131-195 60-115 (116)
105 COG0512 PabA Anthranilate/para 90.6 0.69 1.5E-05 37.5 5.5 78 65-174 2-81 (191)
106 PRK00043 thiE thiamine-phospha 90.1 8.7 0.00019 31.0 12.0 74 131-211 122-208 (212)
107 PF10087 DUF2325: Uncharacteri 90.0 4.9 0.00011 28.6 9.1 29 66-94 1-29 (97)
108 TIGR02370 pyl_corrinoid methyl 89.4 5.8 0.00013 32.2 10.2 98 66-195 86-192 (197)
109 PRK05749 3-deoxy-D-manno-octul 88.7 5.5 0.00012 35.9 10.6 47 166-214 343-389 (425)
110 PRK10558 alpha-dehydro-beta-de 88.1 10 0.00023 32.1 11.2 73 131-208 38-111 (256)
111 PRK10128 2-keto-3-deoxy-L-rham 87.8 12 0.00026 32.0 11.5 73 131-208 37-110 (267)
112 cd02068 radical_SAM_B12_BD B12 87.4 9.9 0.00021 28.2 10.3 103 76-211 4-111 (127)
113 TIGR02311 HpaI 2,4-dihydroxyhe 86.7 16 0.00036 30.8 11.7 76 131-211 31-107 (249)
114 COG0643 CheA Chemotaxis protei 85.9 0.46 1E-05 46.2 2.0 35 3-37 543-578 (716)
115 TIGR03239 GarL 2-dehydro-3-deo 85.9 20 0.00044 30.3 11.8 73 131-208 31-104 (249)
116 PRK10547 chemotaxis protein Ch 85.3 0.5 1.1E-05 45.7 1.9 37 1-37 491-528 (670)
117 PRK12724 flagellar biosynthesi 84.9 32 0.00069 31.6 13.2 107 63-196 251-368 (432)
118 PF01081 Aldolase: KDPG and KH 84.7 13 0.00028 30.3 9.7 91 82-204 3-94 (196)
119 PLN02871 UDP-sulfoquinovose:DA 84.7 12 0.00027 34.1 10.8 68 134-215 332-402 (465)
120 cd02065 B12-binding_like B12 b 83.7 10 0.00022 27.6 8.1 62 71-157 10-75 (125)
121 PRK14974 cell division protein 83.6 31 0.00068 30.6 12.6 63 131-196 220-288 (336)
122 PRK07649 para-aminobenzoate/an 83.5 2 4.4E-05 34.8 4.5 38 67-104 2-39 (195)
123 PRK13566 anthranilate synthase 83.3 6.6 0.00014 38.4 8.6 39 60-98 522-560 (720)
124 PF03602 Cons_hypoth95: Conser 83.3 5 0.00011 32.3 6.6 69 65-156 66-138 (183)
125 TIGR02026 BchE magnesium-proto 82.9 27 0.00059 32.5 12.3 107 73-211 21-136 (497)
126 PRK01130 N-acetylmannosamine-6 82.8 25 0.00054 28.8 10.9 42 148-196 161-202 (221)
127 TIGR03088 stp2 sugar transfera 82.6 19 0.0004 31.5 10.7 67 134-214 273-339 (374)
128 PF03808 Glyco_tran_WecB: Glyc 82.3 11 0.00024 29.8 8.3 73 62-157 46-123 (172)
129 PF07688 KaiA: KaiA domain; I 82.2 9.1 0.0002 32.5 7.8 78 67-176 3-80 (283)
130 cd03820 GT1_amsD_like This fam 82.1 25 0.00054 29.2 11.0 72 133-217 252-323 (348)
131 PRK12726 flagellar biosynthesi 81.9 41 0.00088 30.6 12.4 111 63-196 233-351 (407)
132 PRK08745 ribulose-phosphate 3- 81.7 22 0.00047 29.6 10.0 110 79-211 101-219 (223)
133 PRK05703 flhF flagellar biosyn 81.7 33 0.00071 31.4 12.1 108 63-196 250-366 (424)
134 PRK11889 flhF flagellar biosyn 81.6 43 0.00093 30.7 12.9 111 63-196 268-386 (436)
135 PRK06774 para-aminobenzoate sy 81.4 3 6.5E-05 33.5 4.7 39 67-105 2-40 (191)
136 cd05212 NAD_bind_m-THF_DH_Cycl 80.1 7 0.00015 30.1 6.1 35 61-95 25-59 (140)
137 TIGR01305 GMP_reduct_1 guanosi 79.9 23 0.0005 31.4 9.9 59 131-196 119-178 (343)
138 PRK03958 tRNA 2'-O-methylase; 79.9 29 0.00064 27.8 12.1 61 62-145 29-91 (176)
139 PRK03659 glutathione-regulated 79.6 26 0.00057 33.5 11.2 118 64-197 400-519 (601)
140 PRK10669 putative cation:proto 79.1 49 0.0011 31.2 12.8 130 65-213 418-549 (558)
141 PRK04148 hypothetical protein; 78.5 4.2 9.2E-05 31.1 4.4 99 63-202 16-114 (134)
142 PRK00771 signal recognition pa 78.5 50 0.0011 30.4 12.2 31 64-94 123-156 (437)
143 cd03823 GT1_ExpE7_like This fa 78.3 39 0.00085 28.3 12.3 68 134-214 263-330 (359)
144 TIGR00343 pyridoxal 5'-phospha 78.1 7.1 0.00015 33.7 6.1 64 147-217 184-254 (287)
145 PRK08007 para-aminobenzoate sy 77.7 4.2 9E-05 32.7 4.5 38 67-104 2-39 (187)
146 cd04727 pdxS PdxS is a subunit 77.7 23 0.00049 30.6 9.0 64 147-217 181-251 (283)
147 cd04962 GT1_like_5 This family 76.7 37 0.00079 29.3 10.5 66 134-213 271-336 (371)
148 TIGR00566 trpG_papA glutamine 76.6 5.6 0.00012 31.9 4.9 38 67-104 2-39 (188)
149 PRK06543 nicotinate-nucleotide 76.3 36 0.00078 29.4 10.0 91 66-193 161-262 (281)
150 COG0313 Predicted methyltransf 75.9 27 0.00058 30.1 8.9 95 61-190 27-127 (275)
151 TIGR00693 thiE thiamine-phosph 75.7 29 0.00064 27.6 9.0 57 131-194 114-178 (196)
152 CHL00162 thiG thiamin biosynth 75.7 50 0.0011 28.2 12.8 70 136-212 160-239 (267)
153 COG0742 N6-adenine-specific me 75.6 9 0.0002 31.0 5.8 56 65-144 67-125 (187)
154 PLN02335 anthranilate synthase 75.5 7.1 0.00015 32.3 5.4 35 63-97 17-51 (222)
155 PRK05718 keto-hydroxyglutarate 75.5 44 0.00096 27.5 13.1 95 80-206 8-103 (212)
156 cd06533 Glyco_transf_WecG_TagA 75.4 15 0.00033 29.0 7.1 73 62-157 44-121 (171)
157 PF05690 ThiG: Thiazole biosyn 75.4 26 0.00055 29.6 8.5 99 80-211 115-224 (247)
158 PRK04180 pyridoxal biosynthesi 75.3 10 0.00023 32.8 6.4 69 147-222 190-265 (293)
159 PF00534 Glycos_transf_1: Glyc 75.3 34 0.00073 26.0 10.1 119 63-223 46-168 (172)
160 COG4122 Predicted O-methyltran 75.2 13 0.00028 30.9 6.8 57 66-145 86-144 (219)
161 PF01596 Methyltransf_3: O-met 75.2 21 0.00045 29.2 8.0 58 64-142 70-130 (205)
162 PRK10742 putative methyltransf 75.0 32 0.00069 29.2 9.1 98 63-196 109-218 (250)
163 TIGR01334 modD putative molybd 74.9 14 0.0003 31.9 7.1 68 92-193 193-260 (277)
164 cd03813 GT1_like_3 This family 74.7 53 0.0011 30.2 11.5 70 133-216 370-445 (475)
165 TIGR01425 SRP54_euk signal rec 74.7 68 0.0015 29.5 11.8 44 131-176 180-223 (429)
166 COG2022 ThiG Uncharacterized e 74.2 47 0.001 28.0 9.6 98 79-209 121-229 (262)
167 PF06073 DUF934: Bacterial pro 73.9 24 0.00051 26.1 7.1 70 135-210 19-92 (110)
168 PRK08385 nicotinate-nucleotide 73.9 31 0.00068 29.7 9.0 95 66-193 156-256 (278)
169 PF01861 DUF43: Protein of unk 73.8 21 0.00047 30.1 7.7 88 61-151 42-129 (243)
170 PRK08883 ribulose-phosphate 3- 73.5 51 0.0011 27.3 10.4 107 79-211 97-215 (220)
171 PRK13111 trpA tryptophan synth 73.5 19 0.0004 30.7 7.5 59 148-212 76-140 (258)
172 PRK07896 nicotinate-nucleotide 72.9 22 0.00047 30.9 7.8 69 91-193 203-271 (289)
173 PRK06895 putative anthranilate 72.9 7.3 0.00016 31.2 4.7 32 65-96 2-33 (190)
174 PRK05458 guanosine 5'-monophos 72.7 68 0.0015 28.4 11.2 55 133-194 111-166 (326)
175 TIGR00262 trpA tryptophan synt 72.2 24 0.00051 29.9 7.9 58 148-211 74-137 (256)
176 COG0157 NadC Nicotinate-nucleo 72.2 36 0.00078 29.3 8.8 92 67-193 161-259 (280)
177 PRK05637 anthranilate synthase 72.1 11 0.00024 30.9 5.6 34 65-98 2-35 (208)
178 PLN02591 tryptophan synthase 72.0 20 0.00043 30.4 7.3 58 148-212 66-129 (250)
179 PRK09922 UDP-D-galactose:(gluc 71.9 67 0.0015 28.0 11.9 70 134-216 258-327 (359)
180 cd03818 GT1_ExpC_like This fam 71.4 73 0.0016 28.2 11.7 68 134-215 301-368 (396)
181 PRK15484 lipopolysaccharide 1, 71.1 75 0.0016 28.2 13.1 68 134-214 277-345 (380)
182 PF03102 NeuB: NeuB family; I 70.8 26 0.00057 29.5 7.8 78 74-186 55-132 (241)
183 PRK08091 ribulose-phosphate 3- 70.8 55 0.0012 27.3 9.6 63 133-195 140-206 (228)
184 COG3836 HpcH 2,4-dihydroxyhept 70.7 43 0.00094 28.2 8.7 70 131-205 36-105 (255)
185 smart00052 EAL Putative diguan 70.4 35 0.00075 27.6 8.4 92 79-200 137-239 (241)
186 PRK14098 glycogen synthase; Pr 70.4 70 0.0015 29.7 11.2 70 133-212 381-450 (489)
187 CHL00101 trpG anthranilate syn 70.3 8.4 0.00018 30.9 4.6 32 67-98 2-33 (190)
188 COG0134 TrpC Indole-3-glycerol 70.3 67 0.0015 27.3 10.3 86 78-196 146-236 (254)
189 PRK03562 glutathione-regulated 70.1 64 0.0014 31.0 11.2 114 65-194 401-516 (621)
190 cd03785 GT1_MurG MurG is an N- 70.0 70 0.0015 27.4 11.8 48 166-214 271-325 (350)
191 TIGR01182 eda Entner-Doudoroff 70.0 60 0.0013 26.6 11.9 19 178-197 69-87 (204)
192 cd04724 Tryptophan_synthase_al 69.9 29 0.00062 29.1 7.8 58 148-212 64-127 (242)
193 PRK13125 trpA tryptophan synth 69.6 65 0.0014 26.9 10.6 92 76-196 117-214 (244)
194 cd04729 NanE N-acetylmannosami 69.5 60 0.0013 26.4 11.0 43 147-196 164-206 (219)
195 PRK05670 anthranilate synthase 69.5 9.7 0.00021 30.5 4.7 31 67-97 2-32 (189)
196 PF00448 SRP54: SRP54-type pro 69.4 46 0.001 26.9 8.8 109 64-196 29-149 (196)
197 cd00452 KDPG_aldolase KDPG and 69.0 50 0.0011 26.4 8.8 56 132-196 116-171 (190)
198 cd01948 EAL EAL domain. This d 68.5 29 0.00064 28.0 7.6 92 79-200 136-238 (240)
199 PRK14057 epimerase; Provisiona 68.5 74 0.0016 27.1 10.2 82 133-214 154-244 (254)
200 TIGR03151 enACPred_II putative 68.3 81 0.0018 27.5 10.6 57 132-195 128-189 (307)
201 PRK07428 nicotinate-nucleotide 68.1 26 0.00057 30.3 7.3 68 92-193 201-268 (288)
202 PRK00726 murG undecaprenyldiph 67.8 82 0.0018 27.3 11.8 51 167-218 272-329 (357)
203 cd00429 RPE Ribulose-5-phospha 67.7 61 0.0013 25.8 10.4 60 134-196 128-194 (211)
204 PRK00811 spermidine synthase; 67.5 59 0.0013 27.9 9.5 22 65-86 101-122 (283)
205 PRK11359 cyclic-di-GMP phospho 67.3 75 0.0016 30.9 11.3 103 78-210 681-794 (799)
206 PRK10060 RNase II stability mo 67.2 78 0.0017 30.6 11.2 105 77-211 543-658 (663)
207 cd00564 TMP_TenI Thiamine mono 67.2 58 0.0013 25.4 9.0 56 132-195 114-177 (196)
208 TIGR00959 ffh signal recogniti 67.1 1E+02 0.0023 28.3 11.7 34 63-96 127-163 (428)
209 PRK06731 flhF flagellar biosyn 66.8 82 0.0018 27.0 12.3 110 64-196 103-220 (270)
210 PRK09722 allulose-6-phosphate 66.7 76 0.0016 26.5 10.3 111 79-212 99-220 (229)
211 PRK06978 nicotinate-nucleotide 66.7 25 0.00053 30.6 6.8 65 92-193 210-274 (294)
212 TIGR00007 phosphoribosylformim 66.6 71 0.0015 26.1 11.2 56 133-195 158-217 (230)
213 PRK11840 bifunctional sulfur c 65.7 97 0.0021 27.4 11.7 57 149-212 238-299 (326)
214 PF01729 QRPTase_C: Quinolinat 65.6 28 0.0006 27.6 6.5 69 92-194 85-153 (169)
215 PRK09016 quinolinate phosphori 65.1 31 0.00068 30.0 7.2 66 91-193 212-277 (296)
216 TIGR01815 TrpE-clade3 anthrani 64.9 54 0.0012 32.2 9.6 38 60-97 512-549 (717)
217 PRK13609 diacylglycerol glucos 64.7 98 0.0021 27.1 11.8 63 134-213 274-338 (380)
218 cd03812 GT1_CapH_like This fam 64.4 89 0.0019 26.5 11.4 71 133-218 266-336 (358)
219 PRK07765 para-aminobenzoate sy 64.4 18 0.00038 29.8 5.4 34 65-98 1-34 (214)
220 PF02581 TMP-TENI: Thiamine mo 63.6 54 0.0012 25.9 8.0 55 132-194 114-175 (180)
221 PRK05581 ribulose-phosphate 3- 63.4 78 0.0017 25.5 12.3 76 133-209 131-216 (220)
222 cd04949 GT1_gtfA_like This fam 63.3 1E+02 0.0022 26.7 10.4 68 134-214 279-346 (372)
223 KOG1562 Spermidine synthase [A 63.1 39 0.00084 29.6 7.3 63 66-153 147-215 (337)
224 cd03801 GT1_YqgM_like This fam 63.0 87 0.0019 25.9 11.7 68 134-215 276-343 (374)
225 PRK06106 nicotinate-nucleotide 62.6 31 0.00067 29.8 6.7 65 92-193 199-263 (281)
226 PRK06096 molybdenum transport 62.4 46 0.001 28.8 7.8 69 91-193 193-261 (284)
227 PRK13587 1-(5-phosphoribosyl)- 62.4 91 0.002 26.0 9.8 55 134-195 163-220 (234)
228 TIGR00064 ftsY signal recognit 62.4 99 0.0021 26.4 13.2 112 63-196 99-226 (272)
229 PF14097 SpoVAE: Stage V sporu 62.2 39 0.00085 26.9 6.6 67 67-156 3-78 (180)
230 PRK06843 inosine 5-monophospha 62.0 86 0.0019 28.6 9.7 57 131-194 163-220 (404)
231 CHL00200 trpA tryptophan synth 62.0 39 0.00084 28.8 7.2 56 148-210 79-140 (263)
232 PRK14723 flhF flagellar biosyn 61.9 1.5E+02 0.0032 29.5 11.8 105 65-196 216-332 (767)
233 PRK06559 nicotinate-nucleotide 61.9 30 0.00066 30.0 6.5 90 66-192 169-265 (290)
234 PRK15427 colanic acid biosynth 61.4 1.2E+02 0.0027 27.2 12.5 43 166-212 327-369 (406)
235 PLN02316 synthase/transferase 61.3 1.8E+02 0.0038 30.1 12.6 71 133-213 919-998 (1036)
236 PRK12704 phosphodiesterase; Pr 60.7 12 0.00026 35.3 4.1 46 168-213 250-297 (520)
237 cd04730 NPD_like 2-Nitropropan 60.6 92 0.002 25.4 11.7 57 133-196 122-185 (236)
238 cd03795 GT1_like_4 This family 60.5 1E+02 0.0023 26.0 11.2 72 134-217 264-336 (357)
239 PRK00994 F420-dependent methyl 60.3 1.1E+02 0.0023 26.0 10.8 60 131-197 58-117 (277)
240 TIGR00696 wecB_tagA_cpsF bacte 60.3 33 0.00071 27.4 6.1 71 62-156 46-121 (177)
241 PRK12723 flagellar biosynthesi 60.2 1.3E+02 0.0029 27.2 11.8 107 63-196 205-321 (388)
242 PRK08857 para-aminobenzoate sy 60.0 17 0.00036 29.3 4.4 31 67-97 2-32 (193)
243 TIGR01163 rpe ribulose-phospha 59.8 88 0.0019 24.9 11.1 61 133-196 126-193 (210)
244 COG1927 Mtd Coenzyme F420-depe 59.8 1E+02 0.0022 25.6 10.1 61 131-198 58-118 (277)
245 PRK00748 1-(5-phosphoribosyl)- 59.6 64 0.0014 26.4 8.0 56 133-195 159-219 (233)
246 PRK10867 signal recognition pa 59.6 1.5E+02 0.0031 27.4 11.7 32 64-95 129-163 (433)
247 PRK14099 glycogen synthase; Pr 59.2 1.4E+02 0.003 27.7 10.9 21 190-210 421-441 (485)
248 COG0159 TrpA Tryptophan syntha 58.8 58 0.0013 27.9 7.6 51 148-204 81-137 (265)
249 PRK14722 flhF flagellar biosyn 58.8 1.4E+02 0.003 26.9 10.6 90 65-181 168-261 (374)
250 cd03804 GT1_wbaZ_like This fam 58.5 1.2E+02 0.0026 26.0 10.1 66 134-214 262-327 (351)
251 PF04321 RmlD_sub_bind: RmlD s 58.4 13 0.00028 31.8 3.7 30 65-94 1-30 (286)
252 COG0036 Rpe Pentose-5-phosphat 58.3 1.1E+02 0.0023 25.5 11.9 102 68-194 90-195 (220)
253 COG2200 Rtn c-di-GMP phosphodi 58.1 1.1E+02 0.0024 25.6 11.3 103 76-208 137-250 (256)
254 cd01840 SGNH_hydrolase_yrhL_li 57.8 80 0.0017 23.9 9.0 85 67-176 2-88 (150)
255 PRK10307 putative glycosyl tra 57.6 1.4E+02 0.003 26.5 11.3 45 166-214 330-374 (412)
256 TIGR03590 PseG pseudaminic aci 57.2 1.2E+02 0.0026 25.7 9.6 75 63-176 30-112 (279)
257 TIGR00736 nifR3_rel_arch TIM-b 57.1 1.2E+02 0.0025 25.5 11.2 59 131-195 159-219 (231)
258 PRK00025 lpxB lipid-A-disaccha 57.0 1.3E+02 0.0029 26.2 11.2 28 190-217 318-345 (380)
259 KOG4175 Tryptophan synthase al 56.9 39 0.00084 27.9 5.9 43 163-205 91-139 (268)
260 PRK05096 guanosine 5'-monophos 56.6 1.5E+02 0.0032 26.5 9.9 55 132-193 121-176 (346)
261 TIGR03449 mycothiol_MshA UDP-N 56.4 1.4E+02 0.003 26.2 12.3 68 133-214 302-369 (405)
262 PRK12727 flagellar biosynthesi 56.1 1.6E+02 0.0035 28.1 10.6 55 64-142 380-437 (559)
263 PF00834 Ribul_P_3_epim: Ribul 56.1 30 0.00066 28.2 5.4 64 132-195 126-193 (201)
264 cd05844 GT1_like_7 Glycosyltra 55.5 1.3E+02 0.0029 25.7 12.8 55 148-215 284-338 (367)
265 TIGR03569 NeuB_NnaB N-acetylne 55.2 1.2E+02 0.0027 26.8 9.3 79 73-186 74-152 (329)
266 TIGR01133 murG undecaprenyldip 54.7 1.4E+02 0.003 25.6 11.6 71 133-217 250-325 (348)
267 TIGR00096 probable S-adenosylm 54.6 1.1E+02 0.0025 26.2 8.8 85 62-175 23-109 (276)
268 TIGR03499 FlhF flagellar biosy 54.6 44 0.00096 28.6 6.4 54 64-141 224-280 (282)
269 PRK08005 epimerase; Validated 54.5 94 0.002 25.6 8.0 90 79-195 97-190 (210)
270 PRK07114 keto-hydroxyglutarate 54.2 1.3E+02 0.0028 25.1 13.5 27 177-204 79-105 (222)
271 COG5012 Predicted cobalamin bi 53.9 76 0.0016 26.5 7.3 93 73-197 117-214 (227)
272 PF05582 Peptidase_U57: YabG p 53.9 1.5E+02 0.0032 25.7 11.8 104 66-197 107-227 (287)
273 PRK09490 metH B12-dependent me 53.9 1.2E+02 0.0027 31.8 10.2 98 65-194 752-862 (1229)
274 cd05014 SIS_Kpsf KpsF-like pro 53.8 83 0.0018 22.8 7.2 89 72-198 10-100 (128)
275 PLN02589 caffeoyl-CoA O-methyl 53.8 86 0.0019 26.5 7.9 58 65-142 105-165 (247)
276 PRK09140 2-dehydro-3-deoxy-6-p 53.7 1.2E+02 0.0026 24.7 11.6 62 138-206 38-99 (206)
277 PRK09522 bifunctional glutamin 53.6 30 0.00066 32.7 5.6 33 65-97 2-34 (531)
278 PRK05282 (alpha)-aspartyl dipe 53.5 1.3E+02 0.0029 25.1 9.0 63 64-157 31-99 (233)
279 PF11072 DUF2859: Protein of u 53.5 1E+02 0.0022 23.8 9.3 72 65-174 63-138 (142)
280 COG4981 Enoyl reductase domain 53.5 2.1E+02 0.0046 27.4 11.0 115 82-213 53-174 (717)
281 PRK06015 keto-hydroxyglutarate 53.2 1.3E+02 0.0027 24.7 11.3 85 91-207 9-93 (201)
282 cd01080 NAD_bind_m-THF_DH_Cycl 53.1 78 0.0017 25.0 7.1 38 61-98 41-78 (168)
283 PRK05848 nicotinate-nucleotide 53.0 1.5E+02 0.0032 25.5 10.2 69 92-194 187-255 (273)
284 COG0541 Ffh Signal recognition 52.9 1.9E+02 0.0041 26.7 11.2 79 63-159 127-208 (451)
285 TIGR02855 spore_yabG sporulati 52.8 1.5E+02 0.0033 25.5 10.9 101 65-197 105-226 (283)
286 cd03807 GT1_WbnK_like This fam 52.1 1.4E+02 0.003 24.8 10.5 66 133-214 268-333 (365)
287 PRK10416 signal recognition pa 52.1 1.6E+02 0.0036 25.7 12.3 32 63-94 141-175 (318)
288 PTZ00314 inosine-5'-monophosph 51.9 2E+02 0.0044 26.9 10.7 124 63-195 228-372 (495)
289 cd01573 modD_like ModD; Quinol 51.8 84 0.0018 26.9 7.6 71 91-195 187-257 (272)
290 cd03819 GT1_WavL_like This fam 51.3 1.5E+02 0.0033 25.1 12.1 66 134-212 264-329 (355)
291 cd03114 ArgK-like The function 51.3 83 0.0018 24.0 6.9 35 131-176 89-123 (148)
292 PRK08649 inosine 5-monophospha 51.2 1.9E+02 0.004 26.1 11.9 56 131-195 152-214 (368)
293 TIGR01675 plant-AP plant acid 51.0 61 0.0013 27.1 6.5 32 166-197 135-172 (229)
294 PRK15320 transcriptional activ 50.6 73 0.0016 26.3 6.5 98 66-196 3-102 (251)
295 PRK13143 hisH imidazole glycer 50.6 37 0.00081 27.4 5.1 32 65-96 1-32 (200)
296 PF02882 THF_DHG_CYH_C: Tetrah 50.4 32 0.0007 27.0 4.5 39 61-99 33-71 (160)
297 PRK14607 bifunctional glutamin 50.1 34 0.00073 32.3 5.3 30 66-95 1-31 (534)
298 COG0157 NadC Nicotinate-nucleo 50.1 1E+02 0.0023 26.6 7.7 70 134-210 158-229 (280)
299 PRK14191 bifunctional 5,10-met 50.1 61 0.0013 28.1 6.5 62 61-148 154-215 (285)
300 cd03806 GT1_ALG11_like This fa 50.0 2E+02 0.0042 26.0 11.3 68 134-213 325-392 (419)
301 cd04723 HisA_HisF Phosphoribos 49.9 1.5E+02 0.0032 24.6 9.9 54 135-195 161-217 (233)
302 PRK07695 transcriptional regul 49.4 1.4E+02 0.0029 24.0 10.0 72 132-211 114-197 (201)
303 PTZ00170 D-ribulose-5-phosphat 49.1 1.5E+02 0.0033 24.5 8.6 76 132-212 137-222 (228)
304 PRK03708 ppnK inorganic polyph 49.0 1.7E+02 0.0037 25.1 10.5 108 65-214 1-113 (277)
305 PLN02274 inosine-5'-monophosph 48.8 78 0.0017 29.7 7.5 58 131-195 258-316 (505)
306 PF09456 RcsC: RcsC Alpha-Beta 48.8 96 0.0021 22.1 7.2 89 68-210 3-91 (92)
307 PLN02781 Probable caffeoyl-CoA 48.6 1.1E+02 0.0025 25.2 7.8 57 65-142 94-153 (234)
308 TIGR03765 ICE_PFL_4695 integra 48.4 1.1E+02 0.0023 22.4 9.7 72 66-175 26-101 (105)
309 PRK00278 trpC indole-3-glycero 48.3 1.7E+02 0.0037 24.8 13.6 91 73-195 145-239 (260)
310 TIGR01303 IMP_DH_rel_1 IMP deh 48.3 1.1E+02 0.0023 28.6 8.2 57 131-194 235-292 (475)
311 PLN02366 spermidine synthase 48.2 96 0.0021 27.1 7.5 27 131-157 163-194 (308)
312 PRK03692 putative UDP-N-acetyl 47.9 68 0.0015 27.0 6.3 71 62-156 103-178 (243)
313 COG2247 LytB Putative cell wal 47.8 1.8E+02 0.0038 25.8 8.9 33 62-94 74-106 (337)
314 PF14252 DUF4347: Domain of un 47.7 68 0.0015 25.4 5.9 85 62-158 20-117 (165)
315 PLN02716 nicotinate-nucleotide 47.6 2E+02 0.0042 25.3 9.7 74 92-192 208-286 (308)
316 PF01564 Spermine_synth: Sperm 47.6 36 0.00078 28.6 4.7 67 65-157 101-179 (246)
317 cd00331 IGPS Indole-3-glycerol 47.5 1.5E+02 0.0033 24.0 13.4 43 148-195 158-200 (217)
318 TIGR02082 metH 5-methyltetrahy 47.3 2.2E+02 0.0047 29.9 10.8 99 66-195 734-844 (1178)
319 PRK15490 Vi polysaccharide bio 47.2 2.7E+02 0.0058 26.8 13.3 60 134-207 473-532 (578)
320 PF03328 HpcH_HpaI: HpcH/HpaI 47.2 1.6E+02 0.0034 24.0 11.3 75 131-210 19-106 (221)
321 TIGR00734 hisAF_rel hisA/hisF 47.1 86 0.0019 25.9 6.8 54 135-195 156-212 (221)
322 PLN02476 O-methyltransferase 46.7 1.1E+02 0.0025 26.3 7.6 56 66-142 145-203 (278)
323 cd03115 SRP The signal recogni 46.7 1.3E+02 0.0029 23.1 11.1 96 64-179 28-126 (173)
324 PRK04338 N(2),N(2)-dimethylgua 46.6 1.9E+02 0.0042 26.0 9.4 81 65-180 82-163 (382)
325 PF07279 DUF1442: Protein of u 46.3 1.5E+02 0.0033 24.6 7.9 62 66-156 71-137 (218)
326 cd06279 PBP1_LacI_like_3 Ligan 46.3 1.6E+02 0.0035 24.4 8.5 15 198-212 177-191 (283)
327 cd00532 MGS-like MGS-like doma 46.2 98 0.0021 22.4 6.3 26 71-96 8-33 (112)
328 PRK05752 uroporphyrinogen-III 45.9 1.8E+02 0.0038 24.3 13.7 113 62-210 128-250 (255)
329 PF06283 ThuA: Trehalose utili 45.9 71 0.0015 25.9 6.1 53 66-144 1-63 (217)
330 cd00886 MogA_MoaB MogA_MoaB fa 45.8 44 0.00095 25.7 4.6 30 76-105 21-54 (152)
331 PRK06552 keto-hydroxyglutarate 45.7 1.7E+02 0.0037 24.0 12.5 63 138-205 41-103 (213)
332 cd03825 GT1_wcfI_like This fam 45.7 79 0.0017 26.9 6.7 65 65-154 1-72 (365)
333 PLN02949 transferase, transfer 45.7 2.5E+02 0.0054 25.9 10.7 67 134-212 355-421 (463)
334 cd05013 SIS_RpiR RpiR-like pro 45.6 1.1E+02 0.0024 22.0 9.5 84 66-181 15-101 (139)
335 cd03799 GT1_amsK_like This is 45.6 1.8E+02 0.004 24.4 11.3 46 166-215 284-329 (355)
336 PRK07239 bifunctional uroporph 45.5 2.2E+02 0.0048 25.3 11.8 120 54-208 1-136 (381)
337 TIGR00262 trpA tryptophan synt 45.5 1.9E+02 0.0041 24.5 11.9 41 149-196 187-227 (256)
338 COG0421 SpeE Spermidine syntha 45.5 1.7E+02 0.0037 25.2 8.6 66 66-157 102-178 (282)
339 PRK13170 hisH imidazole glycer 45.4 59 0.0013 26.2 5.5 34 65-98 1-34 (196)
340 COG3967 DltE Short-chain dehyd 45.3 1.8E+02 0.004 24.3 8.3 79 64-175 5-86 (245)
341 PF00497 SBP_bac_3: Bacterial 45.2 1E+02 0.0022 24.0 6.9 54 61-141 107-160 (225)
342 PRK04457 spermidine synthase; 45.0 1.9E+02 0.0041 24.4 11.3 69 63-157 89-165 (262)
343 COG1737 RpiR Transcriptional r 45.0 2E+02 0.0042 24.6 10.4 83 67-182 135-219 (281)
344 PF04672 Methyltransf_19: S-ad 44.9 1.6E+02 0.0034 25.3 8.1 78 64-157 95-178 (267)
345 cd03808 GT1_cap1E_like This fa 44.8 1.8E+02 0.0039 24.0 10.9 68 134-215 264-331 (359)
346 PRK05567 inosine 5'-monophosph 44.7 1.2E+02 0.0026 28.2 8.0 57 131-194 238-295 (486)
347 PLN02823 spermine synthase 44.2 64 0.0014 28.6 5.9 21 65-85 128-148 (336)
348 PRK07764 DNA polymerase III su 44.2 1.1E+02 0.0024 30.6 8.1 77 131-215 118-196 (824)
349 cd01743 GATase1_Anthranilate_S 44.1 32 0.0007 27.2 3.7 33 67-99 1-33 (184)
350 PF01380 SIS: SIS domain SIS d 44.0 1.2E+02 0.0026 21.8 8.0 97 65-201 6-109 (131)
351 TIGR01579 MiaB-like-C MiaB-lik 44.0 2.4E+02 0.0053 25.4 10.3 72 132-210 32-107 (414)
352 TIGR01302 IMP_dehydrog inosine 43.9 1.7E+02 0.0037 26.9 8.9 56 131-193 234-290 (450)
353 COG1091 RfbD dTDP-4-dehydrorha 43.6 63 0.0014 27.9 5.5 58 65-148 1-65 (281)
354 COG0800 Eda 2-keto-3-deoxy-6-p 43.5 1.9E+02 0.0041 23.9 12.1 19 178-197 74-92 (211)
355 TIGR00417 speE spermidine synt 43.4 1.8E+02 0.004 24.5 8.5 27 131-157 143-174 (270)
356 cd04732 HisA HisA. Phosphorib 43.2 97 0.0021 25.3 6.6 53 136-195 163-218 (234)
357 PF00290 Trp_syntA: Tryptophan 43.2 66 0.0014 27.4 5.6 50 148-203 74-129 (259)
358 PRK14178 bifunctional 5,10-met 43.0 66 0.0014 27.8 5.6 42 61-102 149-190 (279)
359 cd01568 QPRTase_NadC Quinolina 43.0 1.2E+02 0.0026 25.9 7.2 69 91-194 185-253 (269)
360 PRK01372 ddl D-alanine--D-alan 42.9 1E+02 0.0022 26.2 6.9 30 76-105 24-53 (304)
361 TIGR01452 PGP_euk phosphoglyco 42.9 1.2E+02 0.0025 25.7 7.2 59 134-202 2-72 (279)
362 cd03794 GT1_wbuB_like This fam 42.8 1.7E+02 0.0037 24.5 8.3 45 166-214 322-366 (394)
363 COG0300 DltE Short-chain dehyd 42.7 2.2E+02 0.0047 24.4 11.3 49 62-110 4-52 (265)
364 PRK06512 thiamine-phosphate py 42.4 1.3E+02 0.0027 24.9 7.1 75 132-214 130-215 (221)
365 cd06292 PBP1_LacI_like_10 Liga 42.4 1.9E+02 0.0041 23.6 8.9 38 132-176 82-131 (273)
366 PRK15128 23S rRNA m(5)C1962 me 42.2 1.1E+02 0.0025 27.6 7.3 54 65-141 244-301 (396)
367 TIGR03704 PrmC_rel_meth putati 41.9 2.1E+02 0.0045 24.0 11.4 28 64-91 110-137 (251)
368 TIGR00888 guaA_Nterm GMP synth 41.8 64 0.0014 25.6 5.1 30 67-96 1-30 (188)
369 cd06346 PBP1_ABC_ligand_bindin 41.8 2.2E+02 0.0047 24.1 11.0 42 131-180 190-231 (312)
370 cd04951 GT1_WbdM_like This fam 41.7 2.1E+02 0.0046 24.1 10.4 63 134-212 263-325 (360)
371 PF10672 Methyltrans_SAM: S-ad 41.5 1E+02 0.0022 26.7 6.5 53 65-141 147-203 (286)
372 PRK13802 bifunctional indole-3 41.5 2.3E+02 0.005 27.9 9.5 90 76-196 148-240 (695)
373 PLN02889 oxo-acid-lyase/anthra 41.2 85 0.0018 31.8 6.7 42 62-103 79-121 (918)
374 COG1908 FrhD Coenzyme F420-red 41.1 51 0.0011 24.8 3.9 28 171-198 35-62 (132)
375 cd04726 KGPDC_HPS 3-Keto-L-gul 41.0 1.8E+02 0.0039 23.0 11.9 57 131-195 124-185 (202)
376 cd00516 PRTase_typeII Phosphor 40.9 2.2E+02 0.0048 24.0 9.4 60 133-193 205-264 (281)
377 TIGR03061 pip_yhgE_Nterm YhgE/ 40.9 76 0.0017 24.5 5.3 42 63-105 42-93 (164)
378 TIGR01684 viral_ppase viral ph 40.8 1.5E+02 0.0031 26.0 7.3 115 65-194 61-189 (301)
379 TIGR03586 PseI pseudaminic aci 40.8 2.6E+02 0.0056 24.7 9.1 81 71-186 73-153 (327)
380 PRK14188 bifunctional 5,10-met 40.5 66 0.0014 28.0 5.3 36 61-96 155-190 (296)
381 PRK01033 imidazole glycerol ph 40.2 2.1E+02 0.0046 24.1 8.3 54 135-195 168-225 (258)
382 CHL00197 carA carbamoyl-phosph 40.1 76 0.0016 28.7 5.7 34 64-99 192-225 (382)
383 TIGR01306 GMP_reduct_2 guanosi 39.9 2.7E+02 0.0058 24.6 9.4 56 134-196 109-165 (321)
384 PF03060 NMO: Nitronate monoox 39.8 2.6E+02 0.0056 24.5 9.4 83 80-195 128-218 (330)
385 PF08415 NRPS: Nonribosomal pe 39.7 45 0.00098 21.2 3.2 34 145-180 3-36 (58)
386 PLN02591 tryptophan synthase 39.7 2.3E+02 0.0051 23.9 11.6 100 66-197 109-219 (250)
387 PRK14175 bifunctional 5,10-met 39.7 1.2E+02 0.0026 26.3 6.6 39 61-99 155-193 (286)
388 TIGR00095 RNA methyltransferas 39.5 2E+02 0.0042 23.0 10.1 69 65-156 73-144 (189)
389 PRK11152 ilvM acetolactate syn 39.3 43 0.00094 22.9 3.2 31 67-97 7-37 (76)
390 PF00977 His_biosynth: Histidi 39.3 2.1E+02 0.0046 23.5 8.0 56 133-195 161-219 (229)
391 cd06273 PBP1_GntR_like_1 This 39.2 2.1E+02 0.0045 23.2 8.7 22 148-176 104-125 (268)
392 cd04722 TIM_phosphate_binding 39.1 1.7E+02 0.0038 22.3 11.0 57 131-194 134-197 (200)
393 PTZ00314 inosine-5'-monophosph 39.1 2.8E+02 0.0062 25.9 9.6 57 131-194 251-308 (495)
394 PF14606 Lipase_GDSL_3: GDSL-l 39.1 44 0.00095 26.9 3.6 40 131-177 57-103 (178)
395 PF13659 Methyltransf_26: Meth 39.0 65 0.0014 22.8 4.4 56 64-144 23-81 (117)
396 PRK03612 spermidine synthase; 38.9 1.6E+02 0.0035 27.7 8.0 27 131-157 371-403 (521)
397 PRK06737 acetolactate synthase 38.9 41 0.00089 23.0 3.0 31 67-97 6-36 (76)
398 PF01408 GFO_IDH_MocA: Oxidore 38.6 1.4E+02 0.0031 21.1 11.1 45 168-212 63-111 (120)
399 TIGR01459 HAD-SF-IIA-hyp4 HAD- 38.2 1.3E+02 0.0029 24.7 6.7 53 132-192 6-67 (242)
400 COG2242 CobL Precorrin-6B meth 38.2 1E+02 0.0022 24.9 5.7 41 62-102 56-98 (187)
401 cd08179 NADPH_BDH NADPH-depend 38.2 1.3E+02 0.0028 26.8 7.0 32 65-96 24-60 (375)
402 PRK07107 inosine 5-monophospha 38.2 2.8E+02 0.0062 26.0 9.4 31 165-195 350-380 (502)
403 TIGR02472 sucr_P_syn_N sucrose 38.2 3E+02 0.0066 24.8 12.0 67 134-214 341-407 (439)
404 TIGR00875 fsa_talC_mipB fructo 38.2 2.3E+02 0.0049 23.3 9.6 48 145-195 137-184 (213)
405 PF00563 EAL: EAL domain; Int 38.0 30 0.00065 27.9 2.7 83 78-191 138-226 (236)
406 COG0167 PyrD Dihydroorotate de 38.0 1.8E+02 0.004 25.5 7.6 55 164-218 238-299 (310)
407 cd03421 SirA_like_N SirA_like_ 37.8 1E+02 0.0022 19.9 4.8 31 65-95 26-56 (67)
408 PLN02605 monogalactosyldiacylg 37.8 2.9E+02 0.0062 24.4 11.1 45 166-213 301-347 (382)
409 cd00331 IGPS Indole-3-glycerol 37.7 2.2E+02 0.0047 23.0 8.0 67 137-210 49-117 (217)
410 KOG1969 DNA replication checkp 37.7 4.3E+02 0.0094 26.4 12.0 138 65-217 326-487 (877)
411 cd06296 PBP1_CatR_like Ligand- 37.6 1.4E+02 0.003 24.3 6.7 11 167-177 117-127 (270)
412 TIGR00511 ribulose_e2b2 ribose 37.5 2.2E+02 0.0047 24.8 8.0 40 62-101 139-179 (301)
413 PF07652 Flavi_DEAD: Flaviviru 37.4 2E+02 0.0043 22.4 7.7 91 62-177 31-136 (148)
414 cd03816 GT1_ALG1_like This fam 37.4 3E+02 0.0066 24.6 12.1 42 166-213 340-381 (415)
415 cd03422 YedF YedF is a bacteri 37.4 1.1E+02 0.0023 20.1 4.8 32 64-95 26-57 (69)
416 TIGR01037 pyrD_sub1_fam dihydr 37.2 2.6E+02 0.0057 23.8 13.0 61 150-217 224-290 (300)
417 PF04131 NanE: Putative N-acet 37.0 1.4E+02 0.003 24.3 6.2 68 88-191 45-114 (192)
418 PRK04128 1-(5-phosphoribosyl)- 36.6 1.8E+02 0.0039 24.1 7.2 52 135-195 158-210 (228)
419 PF13649 Methyltransf_25: Meth 36.5 1E+02 0.0022 21.3 5.0 65 65-156 25-91 (101)
420 smart00852 MoCF_biosynth Proba 36.3 1.3E+02 0.0029 22.3 5.9 17 76-92 19-35 (135)
421 TIGR00308 TRM1 tRNA(guanine-26 36.2 3.2E+02 0.007 24.5 9.2 81 65-179 70-151 (374)
422 COG0190 FolD 5,10-methylene-te 36.0 73 0.0016 27.6 4.7 44 61-104 153-196 (283)
423 PRK08535 translation initiatio 35.7 2.6E+02 0.0057 24.3 8.4 40 62-101 144-184 (310)
424 PRK08335 translation initiatio 35.7 2.6E+02 0.0057 24.0 8.1 40 62-101 133-173 (275)
425 cd04740 DHOD_1B_like Dihydroor 35.7 1.5E+02 0.0032 25.3 6.8 60 149-215 220-285 (296)
426 TIGR00642 mmCoA_mut_beta methy 35.6 4.2E+02 0.0091 25.7 11.1 115 62-211 492-616 (619)
427 COG0352 ThiE Thiamine monophos 35.6 2.5E+02 0.0055 23.1 11.0 53 133-193 124-183 (211)
428 PRK06036 translation initiatio 35.6 1.8E+02 0.004 25.8 7.3 87 62-176 179-268 (339)
429 cd06281 PBP1_LacI_like_5 Ligan 35.5 2.4E+02 0.0053 22.9 8.5 23 148-177 104-126 (269)
430 cd00758 MoCF_BD MoCF_BD: molyb 35.3 78 0.0017 23.6 4.4 19 76-94 20-38 (133)
431 COG0118 HisH Glutamine amidotr 35.1 68 0.0015 26.4 4.2 36 65-100 2-37 (204)
432 PLN02898 HMP-P kinase/thiamin- 35.1 3E+02 0.0065 25.6 9.1 74 131-212 408-496 (502)
433 PRK05286 dihydroorotate dehydr 35.0 90 0.002 27.6 5.4 47 167-213 289-342 (344)
434 PRK14176 bifunctional 5,10-met 35.0 97 0.0021 26.9 5.4 39 61-99 161-199 (287)
435 cd01143 YvrC Periplasmic bindi 35.0 83 0.0018 24.5 4.8 76 124-212 51-126 (195)
436 PF02602 HEM4: Uroporphyrinoge 34.9 2.4E+02 0.0052 22.7 8.9 107 62-204 115-230 (231)
437 TIGR01304 IMP_DH_rel_2 IMP deh 34.9 3.4E+02 0.0074 24.4 9.2 30 166-195 254-283 (369)
438 PRK10537 voltage-gated potassi 34.8 3.5E+02 0.0076 24.5 10.4 115 64-196 240-356 (393)
439 cd08184 Fe-ADH3 Iron-containin 34.4 3.1E+02 0.0067 24.3 8.7 30 65-94 26-55 (347)
440 PRK06124 gluconate 5-dehydroge 34.4 2.5E+02 0.0054 22.7 8.5 35 63-97 10-44 (256)
441 cd06318 PBP1_ABC_sugar_binding 34.4 2.6E+02 0.0056 22.9 8.9 19 78-96 19-37 (282)
442 PRK09776 putative diguanylate 34.3 3.1E+02 0.0068 27.8 9.8 75 129-208 1005-1088(1092)
443 cd04731 HisF The cyclase subun 34.3 2.6E+02 0.0057 23.0 8.0 69 95-195 27-99 (243)
444 COG2179 Predicted hydrolase of 34.3 2.2E+02 0.0048 22.8 6.8 119 63-213 26-156 (175)
445 PRK04302 triosephosphate isome 34.3 2.6E+02 0.0056 22.8 13.5 31 166-196 172-202 (223)
446 TIGR00479 rumA 23S rRNA (uraci 34.1 3.6E+02 0.0077 24.4 10.2 69 65-157 315-385 (431)
447 PRK05653 fabG 3-ketoacyl-(acyl 34.0 2.4E+02 0.0052 22.4 7.6 33 64-96 5-37 (246)
448 COG2089 SpsE Sialic acid synth 33.9 3.4E+02 0.0074 24.1 8.8 87 72-193 87-177 (347)
449 cd06295 PBP1_CelR Ligand bindi 33.8 2.6E+02 0.0057 22.8 8.4 16 198-213 168-183 (275)
450 PRK14994 SAM-dependent 16S rib 33.8 2.6E+02 0.0056 24.2 7.9 84 61-176 34-122 (287)
451 PF01976 DUF116: Protein of un 33.7 90 0.002 24.5 4.6 28 78-105 76-103 (158)
452 TIGR02990 ectoine_eutA ectoine 33.6 2.9E+02 0.0062 23.1 8.3 98 63-194 119-230 (239)
453 PRK11557 putative DNA-binding 33.4 2.9E+02 0.0063 23.1 10.0 84 66-182 130-217 (278)
454 PRK10841 hybrid sensory kinase 33.4 4.5E+02 0.0097 26.7 10.6 79 1-95 635-714 (924)
455 PRK05567 inosine 5'-monophosph 33.4 4E+02 0.0087 24.8 10.4 29 166-194 330-358 (486)
456 PRK01911 ppnK inorganic polyph 33.3 3.2E+02 0.0069 23.6 11.5 58 133-214 64-121 (292)
457 COG2061 ACT-domain-containing 33.2 2.4E+02 0.0052 22.2 6.9 59 65-148 50-128 (170)
458 PF04445 SAM_MT: Putative SAM- 33.2 44 0.00095 28.1 2.9 102 64-196 97-205 (234)
459 cd04726 KGPDC_HPS 3-Keto-L-gul 33.1 2.4E+02 0.0053 22.2 7.5 46 146-197 38-85 (202)
460 PRK00654 glgA glycogen synthas 33.1 3.8E+02 0.0083 24.4 12.7 70 133-212 356-427 (466)
461 TIGR02634 xylF D-xylose ABC tr 33.1 3E+02 0.0065 23.2 8.7 25 148-178 106-130 (302)
462 PLN02460 indole-3-glycerol-pho 33.0 3.5E+02 0.0077 24.1 9.1 94 76-196 218-317 (338)
463 cd08187 BDH Butanol dehydrogen 33.0 1.3E+02 0.0029 26.8 6.3 32 64-95 28-64 (382)
464 TIGR01304 IMP_DH_rel_2 IMP deh 32.9 3.7E+02 0.008 24.2 11.9 55 131-194 153-214 (369)
465 cd03814 GT1_like_2 This family 32.6 2.9E+02 0.0064 23.0 10.5 68 134-215 267-334 (364)
466 PRK01581 speE spermidine synth 32.6 3.4E+02 0.0074 24.5 8.6 27 131-157 224-256 (374)
467 COG1454 EutG Alcohol dehydroge 32.6 3.8E+02 0.0082 24.2 9.8 65 64-156 29-106 (377)
468 COG1922 WecG Teichoic acid bio 32.5 2.4E+02 0.0052 24.0 7.2 65 63-149 107-177 (253)
469 TIGR00735 hisF imidazoleglycer 32.5 3E+02 0.0064 23.0 10.1 52 149-207 188-246 (254)
470 COG4080 SpoU rRNA Methylase fa 32.4 65 0.0014 24.8 3.4 26 80-105 48-73 (147)
471 PRK03522 rumB 23S rRNA methylu 32.3 3.3E+02 0.0072 23.5 10.5 25 65-89 196-220 (315)
472 PRK14190 bifunctional 5,10-met 32.2 1.4E+02 0.003 25.9 5.9 42 61-102 155-196 (284)
473 COG1121 ZnuC ABC-type Mn/Zn tr 32.2 66 0.0014 27.4 3.9 41 130-175 154-197 (254)
474 TIGR01232 lacD tagatose 1,6-di 32.1 2E+02 0.0043 25.5 6.8 43 150-196 228-276 (325)
475 cd08185 Fe-ADH1 Iron-containin 32.1 1.2E+02 0.0027 27.0 5.9 31 65-95 26-61 (380)
476 PRK13608 diacylglycerol glucos 32.1 3.6E+02 0.0079 23.9 11.6 64 133-213 273-338 (391)
477 cd02810 DHOD_DHPD_FMN Dihydroo 32.0 3.1E+02 0.0068 23.1 9.7 40 149-193 230-269 (289)
478 CHL00200 trpA tryptophan synth 32.0 3.2E+02 0.007 23.2 10.1 32 166-197 201-232 (263)
479 PRK14569 D-alanyl-alanine synt 31.9 2.1E+02 0.0045 24.5 7.1 30 75-104 22-52 (296)
480 PLN02778 3,5-epimerase/4-reduc 31.9 2.2E+02 0.0047 24.3 7.2 33 62-94 7-39 (298)
481 PRK14183 bifunctional 5,10-met 31.9 97 0.0021 26.8 4.9 62 61-148 154-215 (281)
482 PF01993 MTD: methylene-5,6,7, 31.9 1.2E+02 0.0027 25.7 5.2 59 131-196 57-115 (276)
483 PRK14172 bifunctional 5,10-met 31.8 1.1E+02 0.0024 26.4 5.2 39 61-99 155-193 (278)
484 PF05768 DUF836: Glutaredoxin- 31.7 1.6E+02 0.0035 19.7 6.5 56 131-208 26-81 (81)
485 cd06329 PBP1_SBP_like_3 Peripl 31.7 3.3E+02 0.0072 23.3 11.6 37 131-175 199-235 (342)
486 PRK13146 hisH imidazole glycer 31.6 1.3E+02 0.0029 24.4 5.5 35 65-99 2-38 (209)
487 PF13407 Peripla_BP_4: Peripla 31.6 2.8E+02 0.006 22.4 9.7 69 77-176 17-89 (257)
488 PF13241 NAD_binding_7: Putati 31.5 84 0.0018 22.3 3.9 36 62-98 5-40 (103)
489 cd01575 PBP1_GntR Ligand-bindi 31.4 2.8E+02 0.006 22.3 9.4 16 198-213 159-174 (268)
490 cd00381 IMPDH IMPDH: The catal 31.4 3.6E+02 0.0078 23.6 10.8 29 167-195 197-225 (325)
491 TIGR00078 nadC nicotinate-nucl 31.3 2.5E+02 0.0053 24.0 7.3 92 66-194 150-248 (265)
492 PRK06182 short chain dehydroge 31.3 2.5E+02 0.0054 23.2 7.3 12 132-143 73-84 (273)
493 PLN02274 inosine-5'-monophosph 31.3 4.5E+02 0.0098 24.7 12.3 30 166-195 350-379 (505)
494 PRK02615 thiamine-phosphate py 31.3 3.8E+02 0.0083 23.9 11.2 73 132-212 259-343 (347)
495 TIGR03128 RuMP_HxlA 3-hexulose 31.2 2.7E+02 0.0059 22.1 13.0 69 133-208 126-203 (206)
496 COG1609 PurR Transcriptional r 31.2 2.4E+02 0.0053 24.6 7.5 49 167-215 175-235 (333)
497 PRK07028 bifunctional hexulose 31.2 4.1E+02 0.0088 24.2 13.1 72 133-212 131-211 (430)
498 TIGR02095 glgA glycogen/starch 31.1 4.1E+02 0.0088 24.2 11.8 23 190-212 414-436 (473)
499 COG1663 LpxK Tetraacyldisaccha 31.1 1.5E+02 0.0032 26.4 5.9 35 87-148 140-174 (336)
500 PLN02939 transferase, transfer 31.0 6.1E+02 0.013 26.1 11.8 70 133-212 856-930 (977)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.92 E-value=7.9e-24 Score=176.66 Aligned_cols=121 Identities=31% Similarity=0.450 Sum_probs=113.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|+..||.|..+.++.+|++.+. .. ||+||+|++||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-------------------------~~-~dlviLD~~lP 54 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-------------------------EQ-PDLVLLDLMLP 54 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------cC-CCEEEEECCCC
Confidence 48999999999999999999999999999999999999987 56 99999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
++||+++|++||+. ....+|||++|+..+..+...++++|||+|++|||++.+|.++|+.++++...
T Consensus 55 ~~dG~~~~~~iR~~-----~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 55 DLDGLELCRRLRAK-----KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CCCHHHHHHHHHhh-----cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 99999999999952 34678999999999999999999999999999999999999999999998753
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.89 E-value=4.3e-22 Score=192.28 Aligned_cols=172 Identities=26% Similarity=0.378 Sum_probs=138.8
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||+++++|..|.|++|+ .+|...... .... ..........+++||+|||++.++..
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~-----~~~~-------~~~~~~~~~~~~~ILivdD~~~~~~~ 540 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAE-----EVED-------AFDEDDMPLPALNILLVEDIELNVIV 540 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccc-----cccc-------ccccccccccccceEEEcCCHHHHHH
Confidence 6899999999999999999999999999 444311100 0000 00111223456899999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~ 159 (230)
+..+|+..||.+..+.++.++++.+. ...||+||+|+.||++||+++++.||+..
T Consensus 541 l~~~L~~~g~~v~~a~~~~eal~~~~-------------------------~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~ 595 (779)
T PRK11091 541 ARSVLEKLGNSVDVAMTGKEALEMFD-------------------------PDEYDLVLLDIQLPDMTGLDIARELRERY 595 (779)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHhh-------------------------cCCCCEEEEcCCCCCCCHHHHHHHHHhcc
Confidence 99999999999999999999999886 66799999999999999999999999632
Q ss_pred hhhhcCCC-ceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 160 AEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 160 ~~~~~~~~-~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.... .|||++|+.... ....+++.|+++||.||++..+|...|.+++...
T Consensus 596 ----~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 596 ----PREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred ----ccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 1134 489999987654 4578899999999999999999999999988644
No 3
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.89 E-value=4.9e-22 Score=194.63 Aligned_cols=171 Identities=24% Similarity=0.339 Sum_probs=142.4
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||++++++..|.|++|+ .+|......+. .. .........+++||||||++.++..
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~-------~~------~~~~~~~~~~~~vLivdD~~~~~~~ 696 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPV-------PK------TVNQAVRLDGLRLLLIEDNPLTQRI 696 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccc-------cc------ccccccccCCcceEEEeCCHHHHHH
Confidence 6899999999999999999999999998 44432111000 00 0011122356799999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~ 159 (230)
+..+|...||.+..+.++.+++..+. ...+||+||+|+.||++||+++++.+|+
T Consensus 697 l~~~L~~~g~~v~~a~~~~~al~~~~------------------------~~~~~Dlvl~D~~mp~~~G~~~~~~lr~-- 750 (914)
T PRK11466 697 TAEMLNTSGAQVVAVGNAAQALETLQ------------------------NSEPFAAALVDFDLPDYDGITLARQLAQ-- 750 (914)
T ss_pred HHHHHHhcCCceEEeCCHHHHHHHHH------------------------cCCCCCEEEEeCCCCCCCHHHHHHHHHh--
Confidence 99999999999999999999999875 1356899999999999999999999986
Q ss_pred hhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 160 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
..+.+|||++|+.........++..|+++||.||++.++|...|..++...
T Consensus 751 ----~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 751 ----QYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred ----hCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 345789999999999999999999999999999999999999999988653
No 4
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.89 E-value=1.1e-21 Score=192.28 Aligned_cols=121 Identities=29% Similarity=0.544 Sum_probs=111.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+++||||||++.++..+..+|+..||.+..+.++.+|++.+. ...||+||+|++
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~-------------------------~~~~DlVl~D~~ 854 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-------------------------KNHIDIVLTDVN 854 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEcCC
Confidence 5679999999999999999999999999999999999999987 667999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+|+|+++++.||+ ....+|||++|+....+....++++|+++||.||++.++|...|.+...+.
T Consensus 855 mP~mdG~el~~~ir~------~~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 855 MPNMDGYRLTQRLRQ------LGLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred CCCCCHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999996 345689999999999999999999999999999999999999998876644
No 5
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.88 E-value=1.4e-21 Score=191.34 Aligned_cols=185 Identities=25% Similarity=0.311 Sum_probs=143.2
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCC----------------CC--------------
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSC----------------PV-------------- 49 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~----------------~~-------------- 49 (230)
|+|++++++.|||+++++|..|.|++|+ .+|......+......... +.
T Consensus 582 L~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (921)
T PRK15347 582 LTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEPLKGELSAPLALHRQLSAWGITCQPGHQNPALLDPELAYL 661 (921)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcccccccccchHHHHHHHHHcCCcccccccchhhcchhhhhc
Confidence 6899999999999999999999999998 5554321111110000000 00
Q ss_pred --------------CCCCCCccccccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhccccc
Q 026988 50 --------------NDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH 115 (230)
Q Consensus 50 --------------~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~ 115 (230)
............+.+++||+|||++.++..+..+|...|+.+..+.++.+|++.+.
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~---------- 731 (921)
T PRK15347 662 PGRLYDLLQQIIQGAPNEPVINLPLQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR---------- 731 (921)
T ss_pred chHHHHHHHHHhhcCCCcccccCCCCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh----------
Confidence 00000000111134579999999999999999999999999999999999999886
Q ss_pred chhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 116 QIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...||+||+|+.||+++|+++++.+|+... ...+++|||++|+..+......+++.|+++||.
T Consensus 732 ---------------~~~~dlil~D~~mp~~~G~~~~~~ir~~~~--~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~ 794 (921)
T PRK15347 732 ---------------QHRFDLVLMDIRMPGLDGLETTQLWRDDPN--NLDPDCMIVALTANAAPEEIHRCKKAGMNHYLT 794 (921)
T ss_pred ---------------cCCCCEEEEeCCCCCCCHHHHHHHHHhchh--hcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 678999999999999999999999986321 123678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 026988 196 KPAQEHLLAAAIVETIA 212 (230)
Q Consensus 196 KP~~~~~L~~~l~~~l~ 212 (230)
||++.++|..++..++.
T Consensus 795 KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 795 KPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987764
No 6
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.88 E-value=8.6e-22 Score=193.74 Aligned_cols=172 Identities=29% Similarity=0.409 Sum_probs=142.4
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||+|++++..|.|++|+ .+|... ........ ........+.+||+|||++.++..
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~-------~~~~~~~~------~~~~~~~~~~~iLvvdd~~~~~~~ 717 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTR-------GKPAEDSA------TLTVIDLPPQRVLLVEDNEVNQMV 717 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCC-------CCcccccc------ccccccccccceEEEcCcHHHHHH
Confidence 6899999999999999999999999998 444321 10000000 001122445699999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~ 159 (230)
+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||...
T Consensus 718 l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvl~D~~mp~~~g~~~~~~ir~~~ 772 (968)
T TIGR02956 718 AQGFLTRLGHKVTLAESGQSALECFH-------------------------QHAFDLALLDINLPDGDGVTLLQQLRAIY 772 (968)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHH-------------------------CCCCCEEEECCCCCCCCHHHHHHHHHhCc
Confidence 99999999999999999999999987 67899999999999999999999999632
Q ss_pred hhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 160 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+ ....+|||++|+.........++..|+++||.||++..+|...|..++..
T Consensus 773 ~---~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 773 G---AKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred c---ccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 2 11228999999999999999999999999999999999999999988754
No 7
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.87 E-value=1.1e-20 Score=184.86 Aligned_cols=123 Identities=34% Similarity=0.488 Sum_probs=112.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++||+|||++.++..+..+|+..|+.+..+.++.+|++.+. ...||+||+|+.
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~-------------------------~~~~dlil~D~~ 720 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAK-------------------------QRPFDLILMDIQ 720 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCC
Confidence 4578999999999999999999999999999999999999886 668999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||++||+++++.||+. ...+.+|||++|+.........+++.|+++|+.||++..+|...|.+++...
T Consensus 721 mp~~~g~~~~~~lr~~----~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 721 MPGMDGIRACELIRQL----PHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred CCCCcHHHHHHHHHhc----ccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 9999999999999963 2346799999999999999999999999999999999999999999887644
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.86 E-value=1.1e-20 Score=190.00 Aligned_cols=172 Identities=27% Similarity=0.373 Sum_probs=141.3
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||++++++..|.|++|+ .+|....... ...... ..........++||||||++..+..
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~---~~~~~~-------~~~~~~~~~~~~iLivdd~~~~~~~ 973 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQV---ATVEAK-------AEQPITLPEKLSILIADDHPTNRLL 973 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchh---cccccc-------cccccccccCceEEEcCCCHHHHHH
Confidence 6899999999999999999999999998 4443211000 000000 0001112345799999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~ 159 (230)
+..+|+..|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.++.
T Consensus 974 l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlil~D~~mp~~~g~~~~~~i~~-- 1026 (1197)
T PRK09959 974 LKRQLNLLGYDVDEATDGVQALHKVS-------------------------MQHYDLLITDVNMPNMDGFELTRKLRE-- 1026 (1197)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHhh-------------------------cCCCCEEEEeCCCCCCCHHHHHHHHHh--
Confidence 99999999999999999999999886 678999999999999999999999985
Q ss_pred hhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 160 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+.+|||++|+..+......+++.|+++||.||++.++|...|+++...
T Consensus 1027 ----~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1027 ----QNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred ----cCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 34568999999999999999999999999999999999999999877653
No 9
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.84 E-value=7.4e-20 Score=134.72 Aligned_cols=111 Identities=32% Similarity=0.501 Sum_probs=104.4
Q ss_pred EEEEeccHHHHHHHHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
||||||++..+..+.+.|+..|+ .+..+.++.+++..+. ...||++++|+.|++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~d~iiid~~~~~ 55 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-------------------------KHPPDLIIIDLELPD 55 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-------------------------HSTESEEEEESSSSS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-------------------------ccCceEEEEEeeecc
Confidence 79999999999999999999999 9999999999999997 667999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
++|.++++.||+. .+.+|+|++|+..+......++++|+++||.||++.++|.++|+
T Consensus 56 ~~~~~~~~~i~~~------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 56 GDGLELLEQIRQI------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SBHHHHHHHHHHH------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ccccccccccccc------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999863 36799999999999999999999999999999999999999875
No 10
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.84 E-value=2.8e-20 Score=147.32 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=112.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.-|.|||||...+..+..+|+..||.+..+.++.+.+.... ...|-|+|+|+.||
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-------------------------~~~pGclllDvrMP 59 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-------------------------LDRPGCLLLDVRMP 59 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-------------------------CCCCCeEEEecCCC
Confidence 47889999999999999999999999999999999988753 56789999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+++|.++.+++.+ .+..+|||++|++.+-....++++.|+.|||.|||+.+.|..+|.+.+.+...+
T Consensus 60 g~sGlelq~~L~~------~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~ 126 (202)
T COG4566 60 GMSGLELQDRLAE------RGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASR 126 (202)
T ss_pred CCchHHHHHHHHh------cCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999986 567899999999999999999999999999999999999999999998864333
No 11
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.84 E-value=4.3e-20 Score=166.26 Aligned_cols=123 Identities=25% Similarity=0.396 Sum_probs=114.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.|
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~-------------------------~~~~~lvl~Di~m 58 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS-------------------------ESPFDLVLLDIRM 58 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-------------------------cCCCCEEEEecCC
Confidence 347999999999999999999999999999999999999997 4479999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|++||+++++.+++ ..+.+|||++|++.+-+....+++.||.+||.|||+.+.|...+.+++......
T Consensus 59 p~~~Gl~ll~~i~~------~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~ 126 (464)
T COG2204 59 PGMDGLELLKEIKS------RDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQ 126 (464)
T ss_pred CCCchHHHHHHHHh------hCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999996 346799999999999999999999999999999999999999999999865443
No 12
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.83 E-value=9.5e-20 Score=163.86 Aligned_cols=118 Identities=21% Similarity=0.403 Sum_probs=108.2
Q ss_pred cEEEEEeccHHHHHHHHHHHH--hcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLK--KLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~--~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+||||||.+.+|+-|++++. ++|+. |..|.||.+|++.+. ..+||+||+|+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-------------------------e~~pDiviTDI 56 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-------------------------ETQPDIVITDI 56 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-------------------------hcCCCEEEEec
Confidence 589999999999999999995 45775 558999999999998 77899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+|||+++++.+++ ..+.+.+|++||+.+-+....++..|+.+||.||++.++|..+|.++...
T Consensus 57 ~MP~mdGLdLI~~ike------~~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 57 NMPGMDGLDLIKAIKE------QSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred CCCCCcHHHHHHHHHH------hCCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 9999999999999996 45678999999999999999999999999999999999999999888763
No 13
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-19 Score=156.27 Aligned_cols=124 Identities=27% Similarity=0.479 Sum_probs=113.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++||+|||.+.++..+...|+..||++..+.+|+++++... ..++|+||+|++
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-------------------------~~~~dlvllD~~ 67 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-------------------------EEPPDLVLLDVR 67 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-------------------------ccCCceEEeecc
Confidence 4579999999999999999999999999999999999998876 556999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+|||.++|++|+++. +.+..+||+++|+..+.+...+++..|+++||.||+++.+|..+++..+..+
T Consensus 68 mp~mdg~ev~~~lk~~~---p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 68 MPEMDGAEVLNKLKAMS---PSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred CCCccHHHHHHHHHhcC---CcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999744 4577899999999999999999999999999999999999999998766544
No 14
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.82 E-value=2e-19 Score=173.28 Aligned_cols=126 Identities=40% Similarity=0.633 Sum_probs=115.4
Q ss_pred ccccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 58 EKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 58 ~~~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
......+.+||+|||++.++++...+|++.|..+..+.+|.+|++.+. ..+.||+|
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~------------------------~~~~y~~i 715 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK------------------------PPHSYDVI 715 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC------------------------CCCcccEE
Confidence 445577899999999999999999999999999999999999999985 25789999
Q ss_pred EEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 138 l~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
|+|++||.|||+++.++||+. ...++|||++|+...+....+|++.|+|+||.|||+.+.|...+.+.+.
T Consensus 716 fmD~qMP~mDG~e~~~~irk~-----~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 716 FMDLQMPEMDGYEATREIRKK-----ERWHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEEcCCcccchHHHHHHHHHh-----hcCCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999999999999999999974 3378999999999999999999999999999999999999999887764
No 15
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=3.9e-19 Score=143.34 Aligned_cols=121 Identities=24% Similarity=0.319 Sum_probs=108.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc-CCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKL-GAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++|||||||+...+.-.+++++. ||. |.++.++++|...+. ...||+||+|+.
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-------------------------~~~pDLILLDiY 55 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-------------------------EFKPDLILLDIY 55 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-------------------------hhCCCEEEEeec
Confidence 47999999999999999999885 775 568999999999998 567899999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
||+.+|++++..+|+ .+.++-||++|+-.+.+.+..+++.|+.|||.|||..+.|.++|.+....+..
T Consensus 56 mPd~~Gi~lL~~ir~------~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 56 MPDGNGIELLPELRS------QHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred cCCCccHHHHHHHHh------cCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 999999999999996 45678899999999999999999999999999999999999999887765433
No 16
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.81 E-value=9.9e-19 Score=170.22 Aligned_cols=172 Identities=20% Similarity=0.176 Sum_probs=139.1
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||++++++..|.|++|+ .+|..... |.. ... ...........+.+||+|||++..+..
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~-~~~------~~~---~~~~~~~~~~~~~~ILvVddd~~~~~~ 712 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKV-PVA------PQA---FFGPGPLPRGRGETVLLVEPDDATLER 712 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCC-CCC------ccc---cCCCcccCCCCCCEEEEEcCCHHHHHH
Confidence 6899999999999999999999999998 44542211 100 000 001111122356799999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~ 159 (230)
+...|...||.+..+.++.++++.+... ...||+||+ .||+++|+++++.++.
T Consensus 713 l~~~L~~~G~~v~~~~s~~~al~~l~~~-----------------------~~~~DlVll--~~~~~~g~~l~~~l~~-- 765 (828)
T PRK13837 713 YEEKLAALGYEPVGFSTLAAAIAWISKG-----------------------PERFDLVLV--DDRLLDEEQAAAALHA-- 765 (828)
T ss_pred HHHHHHHCCCEEEEeCCHHHHHHHHHhC-----------------------CCCceEEEE--CCCCCCHHHHHHHHHh--
Confidence 9999999999999999999999988621 235899999 7999999999999985
Q ss_pred hhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 160 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
..+.+|||++|+.........++..| ++||.||++..+|..+|+.++...
T Consensus 766 ----~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 766 ----AAPTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred ----hCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 34678999999999888999999999 999999999999999999988754
No 17
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.79 E-value=8.3e-18 Score=126.81 Aligned_cols=119 Identities=37% Similarity=0.554 Sum_probs=103.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHHHHHHHhcccccchhccccCCcccccCCC-CccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE-AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP-HYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlvl~D 140 (230)
.+.+||+|||++..+..+...|...|+.+..+.++. +|++.+. .. .||+|++|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-------------------------~~~~~dlii~D 58 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-------------------------ELPQPDLILLD 58 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-------------------------hCCCCCEEEEe
Confidence 457999999999999999999999999999999995 9999987 55 59999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHH-HHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL-LAAAIVETIA 212 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~-L~~~l~~~l~ 212 (230)
++||++||+++++.+|+. .+.+|+|++|+.........++..|+++|+.||+...+ |..++...+.
T Consensus 59 ~~mp~~~G~~~~~~l~~~------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 59 INMPGMDGIELLRRLRAR------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CCCCCCCHHHHHHHHHhC------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 999999999999999962 45678899999888877777799999999999977666 7777775554
No 18
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.79 E-value=3.3e-18 Score=153.04 Aligned_cols=131 Identities=28% Similarity=0.400 Sum_probs=119.4
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
...+||+|||+...+..+.++|...||++..+.++.+|+..+. ..+||+||+|+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~-------------------------e~~~dlil~d~~ 185 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLA-------------------------ELPPDLVLLDAN 185 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHh-------------------------cCCCcEEEEecC
Confidence 4579999999999999999999999999999999999999987 569999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcccchh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDE 222 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~~~~~ 222 (230)
||++||+++++++|+. .....+|||++++..+......+++.|+++|+.||+...+|..++++.+++......+.+
T Consensus 186 mp~~dg~el~~~lr~~----~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~~~L~~ 261 (435)
T COG3706 186 MPDMDGLELCTRLRQL----ERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYERQLRE 261 (435)
T ss_pred CCccCHHHHHHHHhcc----cccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999974 345789999999999999999999999999999999999999999999998765433333
No 19
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.78 E-value=6.1e-18 Score=139.69 Aligned_cols=119 Identities=26% Similarity=0.346 Sum_probs=108.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC-Ce-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG-AG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++|+++||++.++..+..+|...+ +. +..+.|++++++.+. ...||++++|+.
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-------------------------~~~pdvvl~Dl~ 55 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-------------------------ELKPDVVLLDLS 55 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-------------------------hcCCCEEEEcCC
Confidence 379999999999999999998876 66 446777999999865 778999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+++|+++++.|++ ..++++|+++|.+.+......++++|+++|+.|..++++|.++|+.++.+.
T Consensus 56 mP~~~G~e~~~~l~~------~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 56 MPGMDGLEALKQLRA------RGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred CCCCChHHHHHHHHH------HCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999996 356689999999999999999999999999999999999999999998765
No 20
>PRK13557 histidine kinase; Provisional
Probab=99.77 E-value=2.2e-17 Score=151.87 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=139.1
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++.+++.+||.+++++..|.|++|+ .+|......+ .+ +. ..........+.+||+|+|++..+..
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~----~~---~~----~~~~~~~~~~~~~iliv~~~~~~~~~ 430 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAEN----PE---QE----PKARAIDRGGTETILIVDDRPDVAEL 430 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccC----CC---CC----CCCcccccCCCceEEEEcCcHHHHHH
Confidence 5789999999999999999999999998 4443221110 00 00 00011122446799999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-CCHHHHHHHHHHh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-MDGCKATRVIRRL 158 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-~dg~~l~~~lr~~ 158 (230)
+..+|...||.+..+.++.+++..+. ....||+|++|..|++ ++|+++++.+++.
T Consensus 431 l~~~l~~~~~~v~~~~~~~~~~~~~~------------------------~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~ 486 (540)
T PRK13557 431 ARMILEDFGYRTLVASNGREALEILD------------------------SHPEVDLLFTDLIMPGGMNGVMLAREARRR 486 (540)
T ss_pred HHHHHHhcCCeEEEeCCHHHHHHHHh------------------------cCCCceEEEEeccCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999998875 1346999999999997 9999999999862
Q ss_pred hhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 159 ~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.+.+|+|++++..........+..|+.+|+.||++.++|...+..++...
T Consensus 487 ------~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 487 ------QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred ------CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCC
Confidence 35689999999888888888899999999999999999999998877644
No 21
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.76 E-value=3.2e-17 Score=136.17 Aligned_cols=119 Identities=19% Similarity=0.235 Sum_probs=106.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-CCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL-GAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.++||+|||++..+..+...|+.. ++. +..+.++.++++.+. ...||+||+|+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-------------------------~~~pdlvllD~ 58 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-------------------------RFKPGLILLDN 58 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-------------------------hcCCCEEEEeC
Confidence 479999999999999999999874 774 678999999999886 66799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++.+++ ..++.|||++|+..+......+++.|+++|+.||++.++|..+|+++..+
T Consensus 59 ~mp~~~gle~~~~l~~------~~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 124 (225)
T PRK10046 59 YLPDGRGINLLHELVQ------AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 (225)
T ss_pred CCCCCcHHHHHHHHHh------cCCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHH
Confidence 9999999999999985 23457899999999999999999999999999999999999999887553
No 22
>PLN03029 type-a response regulator protein; Provisional
Probab=99.75 E-value=4.7e-17 Score=135.38 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=108.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+++||+|||++..+..+..+|...||.+..+.++.+++..+.....+. .+...-.+. -.......+|+||+|+.
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~---~~p~~~~~~--~~~~~~~~~dlVllD~~ 81 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDR---SNPDTPSVS--PNSHQEVEVNLIITDYC 81 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccc---ccccccccc--ccccccccCCEEEEcCC
Confidence 4579999999999999999999999999999999999999885210000 000000000 00001235789999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
||+++|+++++.|++. .....+|||++|+.........++..|+++||.||++..+|...+...+..
T Consensus 82 mp~~~G~e~l~~ir~~----~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 82 MPGMTGYDLLKKIKES----SSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred CCCCCHHHHHHHHHhc----cccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999852 123568999999999999999999999999999999999997766655543
No 23
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.74 E-value=1.1e-16 Score=131.52 Aligned_cols=119 Identities=25% Similarity=0.345 Sum_probs=109.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-------------------------~~~~dlvild~~l~ 55 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-------------------------EHLPDIAIVDLGLP 55 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------hCCCCEEEEECCCC
Confidence 47999999999999999999999999999999999998876 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ..+.+|+|++|+..+......+++.|+++|+.||++..+|..++..++.+.
T Consensus 56 ~~~g~~l~~~lr~------~~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 56 DEDGLSLIRRWRS------NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CCCHHHHHHHHHh------cCCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999985 335689999999999999999999999999999999999999999888764
No 24
>PRK11173 two-component response regulator; Provisional
Probab=99.74 E-value=1.3e-16 Score=132.51 Aligned_cols=119 Identities=18% Similarity=0.295 Sum_probs=109.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.|
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l 57 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-------------------------ENDINLVIMDINL 57 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-------------------------hCCCCEEEEcCCC
Confidence 358999999999999999999999999999999999999886 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++ ...+|+|++|+..+......++..|+++|+.||++..+|..+++.++++.
T Consensus 58 ~~~~g~~~~~~lr~-------~~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 58 PGKNGLLLARELRE-------QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHhc-------CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999984 24589999999998888889999999999999999999999999988764
No 25
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.74 E-value=1.6e-16 Score=130.74 Aligned_cols=119 Identities=26% Similarity=0.400 Sum_probs=108.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
|+||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.||
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~~~ 55 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-------------------------TGDYDLIILDIMLP 55 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------hCCCCEEEEECCCC
Confidence 47999999999999999999999999999999999988775 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ..+.+|||++|+..+......+++.|+++|+.||++.++|..++..++.+.
T Consensus 56 ~~~g~~~~~~lr~------~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 56 DVNGWDIVRMLRS------ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred CCCHHHHHHHHHh------cCCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999985 335689999999999999999999999999999999999999999888754
No 26
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.73 E-value=2e-16 Score=129.93 Aligned_cols=118 Identities=25% Similarity=0.346 Sum_probs=107.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l~ 56 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-------------------------TRKPDLIILDLGLP 56 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 48999999999999999999999999999999999988765 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ...+|+|++|+..+......++..|+++|+.||++.++|..+++.++.+.
T Consensus 57 ~~~g~~~~~~lr~-------~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 57 DGDGIEFIRDLRQ-------WSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCHHHHHHHHHc-------CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999984 24589999999999999999999999999999999999999999888754
No 27
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.73 E-value=3.1e-16 Score=127.96 Aligned_cols=119 Identities=27% Similarity=0.375 Sum_probs=108.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~d~illd~~~~ 55 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-------------------------SGHYSLVVLDLGLP 55 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEECCCC
Confidence 47999999999999999999999999999999999988876 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.++. ..+.+|+|++|+..+......+++.|+++|+.||++.++|..++..++.+.
T Consensus 56 ~~~g~~~~~~l~~------~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 56 DEDGLHLLRRWRQ------KKYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred CCCHHHHHHHHHh------cCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999985 335689999999999999999999999999999999999999999888654
No 28
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.72 E-value=4.3e-16 Score=129.38 Aligned_cols=120 Identities=25% Similarity=0.352 Sum_probs=109.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||++||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.|
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l 59 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-------------------------RESFHLMVLDLML 59 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCC
Confidence 358999999999999999999999999999999999988876 6679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.++. ..+.+|||++++..+......++..|+++|+.||++.++|..++..++++.
T Consensus 60 ~~~~g~~~~~~lr~------~~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 60 PGEDGLSICRRLRS------QNNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred CCCCHHHHHHHHHh------cCCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999985 235689999999999989999999999999999999999999999988764
No 29
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.71 E-value=5.8e-16 Score=126.84 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=108.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++.....+...|...|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l~ 57 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-------------------------NQHVDLILLDINLP 57 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 58999999999999999999999999999999999998876 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ...+|+|++++..+......+++.|+++|+.||++..+|..++..++++.
T Consensus 58 ~~~g~~~~~~lr~-------~~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 58 GEDGLMLTRELRS-------RSTVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCHHHHHHHHHh-------CCCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999985 13689999999999888899999999999999999999999999888753
No 30
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.71 E-value=6e-16 Score=126.13 Aligned_cols=119 Identities=29% Similarity=0.396 Sum_probs=107.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l~ 55 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-------------------------SAPYDAVILDLTLP 55 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------hCCCCEEEEECCCC
Confidence 47999999999999999999999999999999999988775 55799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ..+.+|+|++|+..+......++..|+++|+.||++.++|..++..++.+.
T Consensus 56 ~~~g~~~~~~i~~------~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 56 GMDGRDILREWRE------KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred CCCHHHHHHHHHh------cCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999985 345689999999999888899999999999999999999999999887653
No 31
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.71 E-value=7.8e-16 Score=126.86 Aligned_cols=120 Identities=25% Similarity=0.394 Sum_probs=108.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+||+|+.||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l~ 57 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-------------------------EPWPDLILLDWMLP 57 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------ccCCCEEEEeCCCC
Confidence 58999999999999999999999999999999999998876 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+++|+++++.+++. ...+.+|+|++|+..+......++++|+++|+.||++..+|..++..++++
T Consensus 58 ~~~g~~~~~~l~~~----~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 58 GGSGIQFIKHLKRE----SMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred CCCHHHHHHHHHhc----cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999852 123568999999999989999999999999999999999999999988875
No 32
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.70 E-value=8.5e-16 Score=125.82 Aligned_cols=120 Identities=22% Similarity=0.332 Sum_probs=108.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||+|||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvl~d~~~ 57 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-------------------------QQPPDLVILDVGL 57 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-------------------------cCCCCEEEEeCCC
Confidence 358999999999999999999999999988999999988775 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+.+|+++++.+++ ..+.+|+|++|+..+......++..|+++|+.||++.++|..++..++.+.
T Consensus 58 ~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 58 PDISGFELCRQLLA------FHPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred CCCCHHHHHHHHHh------hCCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999999999985 235689999999888888889999999999999999999999999887764
No 33
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.70 E-value=6e-16 Score=127.44 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=107.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC-e-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA-G-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~-~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
++++||+|||++..+..+...|+..++ . +..+.++.+++..+. ...||+||+|
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~DlvllD 56 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-------------------------KLDAHVLITD 56 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-------------------------hCCCCEEEEe
Confidence 357999999999999999999988665 3 667899999998876 5679999999
Q ss_pred cCCCC---CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 141 CQMGS---MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 141 ~~mp~---~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+.||+ .+|.++++++++ ..+.+|||++|+..+......+++.|+++|+.||++..+|..+++.++.+..
T Consensus 57 ~~l~~~~~~~g~~~~~~l~~------~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~ 128 (216)
T PRK10840 57 LSMPGDKYGDGITLIKYIKR------HFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CcCCCCCCCCHHHHHHHHHH------HCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCe
Confidence 99999 599999999985 3456899999999999999999999999999999999999999998887544
No 34
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.70 E-value=9.5e-17 Score=134.90 Aligned_cols=119 Identities=24% Similarity=0.387 Sum_probs=105.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++|+||||+......+..+|.+.|+.+..|+...+|++.|. ...||++|+|+.||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-------------------------~~kpDLifldI~mp 55 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-------------------------VFKPDLIFLDIVMP 55 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-------------------------hcCCCEEEEEeecC
Confidence 47999999999999999999999999999999999999998 77899999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
+|+|.+++.++|.+. +.+|||++|++.. .....+....++||.||++++.|..+|.+...+...
T Consensus 56 ~~ngiefaeQvr~i~------~~v~iifIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~ 119 (361)
T COG3947 56 YMNGIEFAEQVRDIE------SAVPIIFISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVEL 119 (361)
T ss_pred CccHHHHHHHHHHhh------ccCcEEEEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccccc
Confidence 999999999999753 5699999999754 444566667799999999999999999988865433
No 35
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.70 E-value=9.2e-16 Score=127.57 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=107.0
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-------------------------~~~~dlvild~~l~~ 57 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-------------------------REQPDLVLLDIMLPG 57 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-------------------------hCCCCEEEEeCCCCC
Confidence 7999999999999999999999999999999999998876 667999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
++|+++++.+++ ....|+|++++..+......++..|+++|+.||++..+|..+++..+++.
T Consensus 58 ~~g~~~~~~ir~-------~~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 58 KDGMTICRDLRP-------KWQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCHHHHHHHHHh-------cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999985 13479999999888888889999999999999999999999999888764
No 36
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.70 E-value=9.8e-16 Score=127.84 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=105.1
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+|++|+.||+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~l~~ 57 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-------------------------SETVDVVVVDLNLGR 57 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-------------------------hCCCCEEEEeCCCCC
Confidence 7999999999999999999999999999999999998876 667999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCC-ChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALV-TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~-~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
++|+++++.++. ...+|+|++|+.. +......+++.|+++|+.||++.++|..+++.++++.
T Consensus 58 ~~g~~l~~~i~~-------~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 58 EDGLEIVRSLAT-------KSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCHHHHHHHHHh-------cCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999984 2358999999854 5666778999999999999999999999999888764
No 37
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.70 E-value=1.4e-15 Score=125.14 Aligned_cols=118 Identities=26% Similarity=0.319 Sum_probs=107.0
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvild~~l~~ 56 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-------------------------QRLPDLAIIDIGLGE 56 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-------------------------hCCCCEEEEECCCCC
Confidence 6999999999999999999999999999999999998876 567999999999997
Q ss_pred --CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 146 --MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 146 --~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.+|+++++.++. ..+.+|+|++|+..+......+++.|+++|+.||++.++|..+++.++++.
T Consensus 57 ~~~~g~~~~~~i~~------~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 57 EIDGGFMLCQDLRS------LSATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred CCCCHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 589999999985 235689999999999999999999999999999999999999999888764
No 38
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.69 E-value=1.2e-15 Score=124.61 Aligned_cols=121 Identities=28% Similarity=0.414 Sum_probs=108.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~d~vi~d~~~~ 57 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-------------------------ERGPDLILLDWMLP 57 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-------------------------hcCCCEEEEECCCC
Confidence 58999999999999999999999999999999999998876 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.++.. ...+.+|||++|+..+......++..|+++|+.||++.++|..++..++.+.
T Consensus 58 ~~~g~~~~~~l~~~----~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 58 GTSGIELCRRLRRR----PETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred CCcHHHHHHHHHcc----ccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999852 1235689999999999888999999999999999999999999999888754
No 39
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.69 E-value=1.4e-15 Score=124.51 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=107.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-------------------------~~~~dlvi~d~~~~ 55 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-------------------------KDDYALIILDIMLP 55 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEECCCC
Confidence 47999999999999999999999999999999999998875 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ...+|+|++|+..+......++..|+++|+.||++.++|..++...+.+.
T Consensus 56 ~~~g~~~~~~l~~-------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 56 GMDGWQILQTLRT-------AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCHHHHHHHHHc-------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999985 13589999999999999999999999999999999999999999888654
No 40
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.69 E-value=1.5e-15 Score=124.94 Aligned_cols=117 Identities=29% Similarity=0.427 Sum_probs=105.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. ..||+|++|+.||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------------------~~~d~vl~d~~~~ 55 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--------------------------DSIDLLLLDVMMP 55 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--------------------------cCCCEEEEeCCCC
Confidence 37999999999999999999999999999999999988763 3599999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.++. ... +|+|++|+..+......+++.|+++|+.||++.++|..+++.++.+.
T Consensus 56 ~~~g~~~~~~l~~------~~~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 56 KKNGIDTLKELRQ------THQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCcHHHHHHHHHh------cCC-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999985 223 89999999988888889999999999999999999999999888754
No 41
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.69 E-value=1.3e-15 Score=127.66 Aligned_cols=117 Identities=23% Similarity=0.336 Sum_probs=101.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc-CCeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKL-GAGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~-g~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++||+|||++..+..+..+|... ++.+ ..+.++.+++..+... ...||+||+|+.
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~-----------------------~~~~DlvilD~~ 58 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS-----------------------DTPIDLILLDIY 58 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc-----------------------CCCCCEEEEecC
Confidence 58999999999999999999864 6754 4778889998877511 356999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
||+++|+++++.+++ ..+.+|||++|+..+......++..|+++|+.||++.++|..+|..+
T Consensus 59 ~p~~~G~eli~~l~~------~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 59 MQQENGLDLLPVLHE------AGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCCCcHHHHHHHHh------hCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999999986 34568999999999999999999999999999999999999999764
No 42
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.68 E-value=6.7e-16 Score=118.18 Aligned_cols=114 Identities=23% Similarity=0.338 Sum_probs=106.7
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
..|+||||+.+.+.|.+.+++.||.|.++.+.++++..++ ...|...++|+.|.+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-------------------------t~~PayAvvDlkL~~ 65 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-------------------------TAPPAYAVVDLKLGD 65 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-------------------------cCCCceEEEEeeecC
Confidence 7899999999999999999999999999999999999987 778999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
.+|+++++.||++ ..+..||++|++.+-.....+.+.|+++||.||-+.+++..++.+.
T Consensus 66 gsGL~~i~~lr~~------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 66 GSGLAVIEALRER------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred CCchHHHHHHHhc------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 9999999999974 4558999999999999999999999999999999999999887654
No 43
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.68 E-value=2.7e-15 Score=124.11 Aligned_cols=119 Identities=29% Similarity=0.442 Sum_probs=108.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-------------------------~~~~d~illd~~~ 60 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-------------------------KEQPDLVILDVMM 60 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeCCC
Confidence 469999999999999999999999999988999999988775 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.++. .+.+|+|++|+..+......++..|+++|+.||++.++|..++..++.+.
T Consensus 61 ~~~~g~~~~~~l~~-------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 61 PKLDGYGVCQEIRK-------ESDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred CCCCHHHHHHHHHh-------cCCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999985 14689999999998888899999999999999999999999999887654
No 44
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.67 E-value=3.1e-15 Score=121.66 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=107.2
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM 146 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~ 146 (230)
||++||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvl~d~~~~~~ 55 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-------------------------KDDYDLIILDVMLPGM 55 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999998876 6679999999999999
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+|+++++.++. ..+.+|||++|+..+......++..|+++|+.||++.++|..+++.++.+..
T Consensus 56 ~g~~~~~~l~~------~~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 56 DGWQILQTLRR------SGKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred CHHHHHHHHHc------cCCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 99999999985 3456899999999999999999999999999999999999999998887543
No 45
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.67 E-value=3.2e-15 Score=120.83 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=107.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
++|+++||++..+..+...|+..|+.+. .+.++.+++..+. ...||+|++|+.|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~~ 55 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-------------------------TLKPDIVIIDVDI 55 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-------------------------ccCCCEEEEeCCC
Confidence 5799999999999999999999999886 6899999998876 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
|+++|+++++.++.. .+..|+|++|+..+......++..|+++|+.||++.++|..+++.++.+..
T Consensus 56 ~~~~g~~~~~~l~~~------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~ 121 (204)
T PRK09958 56 PGVNGIQVLETLRKR------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 (204)
T ss_pred CCCCHHHHHHHHHhh------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCc
Confidence 999999999999852 345789999998888889999999999999999999999999999876543
No 46
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.67 E-value=3.8e-15 Score=126.17 Aligned_cols=121 Identities=18% Similarity=0.276 Sum_probs=105.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-CCeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL-GAGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~-g~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++||+|||++..+..+...|... ++.+ ..+.++.++++.+. ...||+|++|+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-------------------------~~~~DlvllD~ 56 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-------------------------EQQPDVVVLDI 56 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeC
Confidence 468999999999999999999864 4454 47899999999886 66799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++.+++.. ....+|+|++|+.........+++.|+++|+.||++..+|..++..++..
T Consensus 57 ~mp~~dG~~~l~~i~~~~----~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 57 IMPHLDGIGVLEKLNEIE----LSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCCCCCHHHHHHHHHhhc----cccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999998632 22347999999999999999999999999999999999999999988764
No 47
>PRK15115 response regulator GlrR; Provisional
Probab=99.65 E-value=3.5e-15 Score=135.72 Aligned_cols=120 Identities=25% Similarity=0.375 Sum_probs=109.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-------------------------~~~~dlvilD~~l 59 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-------------------------REKVDLVISDLRM 59 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEcCCC
Confidence 469999999999999999999999999999999999999886 6679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++ ..+.+|||++|+..+......++..|+++|+.||++.++|...+..++...
T Consensus 60 p~~~g~~ll~~l~~------~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 60 DEMDGMQLFAEIQK------VQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred CCCCHHHHHHHHHh------cCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999985 345689999999998888999999999999999999999999999887643
No 48
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.65 E-value=5.8e-15 Score=135.22 Aligned_cols=119 Identities=25% Similarity=0.356 Sum_probs=109.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+.+.|...||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-------------------------~~~~DlvllD~~l 57 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-------------------------SKTPDVLLSDIRM 57 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEECCCC
Confidence 358999999999999999999999999999999999999886 6679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
|+++|+++++.++. ..+.+|+|++|+..+......+++.|+++|+.||++..++...+.+++..
T Consensus 58 p~~dgl~~l~~ir~------~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 58 PGMDGLALLKQIKQ------RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred CCCCHHHHHHHHHh------hCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 99999999999985 33568999999999999999999999999999999999999999887764
No 49
>PRK09483 response regulator; Provisional
Probab=99.65 E-value=7.5e-15 Score=119.74 Aligned_cols=120 Identities=28% Similarity=0.355 Sum_probs=107.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc-CCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKL-GAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++||++||++..+..+...|... |+.+. .+.++.+++..+. ...||+||+|+.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~ 56 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-------------------------TNAVDVVLMDMN 56 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeCC
Confidence 48999999999999999999874 78765 7889999988876 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+|+++|+++++.+++ ..+.+|+|++|...+......++..|+++|+.||++.++|..+++.++.+..
T Consensus 57 ~~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~ 123 (217)
T PRK09483 57 MPGIGGLEATRKILR------YTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (217)
T ss_pred CCCCCHHHHHHHHHH------HCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCc
Confidence 999999999999985 3456899999999999899999999999999999999999999998887643
No 50
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.65 E-value=5.7e-15 Score=134.66 Aligned_cols=120 Identities=23% Similarity=0.353 Sum_probs=109.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+|++|+.|
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlillD~~~ 58 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-------------------------DIHPDVVLMDIRM 58 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCC
Confidence 358999999999999999999999999999999999999886 6679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.++. ..+.+|+|++|+..+......+++.|+++|+.||++.++|...+..++...
T Consensus 59 p~~~g~~ll~~i~~------~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 59 PEMDGIKALKEMRS------HETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred CCCCHHHHHHHHHh------cCCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 99999999999985 235689999999999999999999999999999999999999998777644
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.64 E-value=4.6e-15 Score=134.61 Aligned_cols=120 Identities=27% Similarity=0.462 Sum_probs=109.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++||||||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~DlvilD~~ 58 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-------------------------EQVFDLVLCDVR 58 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeCC
Confidence 3479999999999999999999999999999999999999876 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
||+++|+++++.+++ ..+.+|||++|+..+......+++.|+.+|+.||++.+.|..++..++..
T Consensus 59 m~~~~G~~~~~~ir~------~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 59 MAEMDGIATLKEIKA------LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred CCCCCHHHHHHHHHh------hCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999986 24568999999998888999999999999999999999999999887764
No 52
>PRK14084 two-component response regulator; Provisional
Probab=99.64 E-value=1.1e-14 Score=121.98 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=99.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC-C-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG-A-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g-~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++|++|||++..+..+...|...+ + .+..+.++.+++..+. ...||++++|+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-------------------------~~~~dlv~lDi~ 55 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-------------------------INQYDIIFLDIN 55 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-------------------------hcCCCEEEEeCC
Confidence 479999999999999999998865 3 4667899999998876 557999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
||+++|+++++.+++ .....+||++|+... ....+++.|+.+|+.||++.++|..++.++...
T Consensus 56 m~~~~G~~~~~~i~~------~~~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 56 LMDESGIELAAKIQK------MKEPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred CCCCCHHHHHHHHHh------cCCCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999986 234567888887643 466889999999999999999999999988754
No 53
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.64 E-value=1.8e-14 Score=116.50 Aligned_cols=120 Identities=14% Similarity=0.240 Sum_probs=105.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-CCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL-GAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+||++||++..+..+...|... ++.+. .+.++.+++..+. ...||+|++|+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~dlvild~ 57 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-------------------------TRPVDLIIMDI 57 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeC
Confidence 468999999999999999999876 57765 6788888888775 56799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.||+++|.++++.++. ..+.+|||++|+..+......++..|+++|+.||++.++|..++..++.+.
T Consensus 58 ~l~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 58 DLPGTDGFTFLKRIKQ------IQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred CCCCCCHHHHHHHHHH------hCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999985 235589999999988888899999999999999999999999999887764
No 54
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.63 E-value=2.9e-15 Score=135.12 Aligned_cols=122 Identities=21% Similarity=0.313 Sum_probs=107.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
....+||+|||++..+..+.+.|.. .+.+..+.++.+++..+. ..+||+|++|+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-------------------------~~~~d~vi~d~ 206 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-------------------------ETNYDLVIVSA 206 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-------------------------cCCCCEEEecC
Confidence 3456899999999999999999964 577778999999999875 67899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++.+++. ...+.+|+|++|+..+......++..|+++|+.||+++++|...+......
T Consensus 207 ~~p~~~g~~l~~~i~~~----~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 207 NFENYDPLRLCSQLRSK----ERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred CCCCchHhHHHHHHHhc----cccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999852 223679999999999999999999999999999999999999998776653
No 55
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.61 E-value=2.6e-14 Score=114.75 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=102.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc-CCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKL-GAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++||+|||++..+..+.+.|... ++. +..+.++.+++..+. ...||+|++|+.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-------------------------~~~~dlvi~d~~ 56 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-------------------------GRGVQVCICDIS 56 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCC
Confidence 48999999999999999999754 565 567889999998876 667999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+++|+++++.++. .+|||++|+..+......++..|+++|+.||++.++|..+++.++.+.
T Consensus 57 ~~~~~g~~~~~~l~~---------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 57 MPDISGLELLSQLPK---------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred CCCCCHHHHHHHHcc---------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999888752 478999999999999999999999999999999999999999988753
No 56
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.61 E-value=4.5e-14 Score=116.72 Aligned_cols=118 Identities=27% Similarity=0.379 Sum_probs=106.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvl~d~~~~ 65 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-------------------------QTPPDLILLDLMLP 65 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------hCCCCEEEEeCCCC
Confidence 38999999999999999999999999999999999998876 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.++. ...+|++++++.........++..|+++|+.||++..+|..+++.++.+.
T Consensus 66 ~~~g~~~~~~l~~-------~~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 66 GTDGLTLCREIRR-------FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred CCCHHHHHHHHHh-------cCCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9999999999984 23589999999888888889999999999999999999999998887753
No 57
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.61 E-value=4.5e-14 Score=115.01 Aligned_cols=119 Identities=30% Similarity=0.431 Sum_probs=106.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++|+++||++.....+...|...|+.+..+.++.++...+. ...||+|++|+.+|
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~d~vild~~~~ 55 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-------------------------SEMYALAVLDINMP 55 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------hCCCCEEEEeCCCC
Confidence 47999999999999999999999999989999999887765 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.++. ..+.+|+|++|+..+......++..|+++|+.||++..+|...+..++.+.
T Consensus 56 ~~~~~~~~~~i~~------~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 56 GMDGLEVLQRLRK------RGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred CCcHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999985 335689999999888888889999999999999999999999998877654
No 58
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.61 E-value=1.6e-14 Score=131.50 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=103.3
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS- 145 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~- 145 (230)
||||||++..+..+...| .||.+..+.++.++++.+. ...||+||+|+.||+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-------------------------~~~~dlvllD~~mp~~ 53 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-------------------------RHEPAVVTLDLGLPPD 53 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-------------------------hCCCCEEEEeCCCCCC
Confidence 689999999999999888 7899999999999999886 567999999999996
Q ss_pred ----CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 146 ----MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 146 ----~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
++|+++++.+++ ..+.+|||++|+..+.+....+++.|+++|+.||++.++|..+|..++..
T Consensus 54 ~~~~~~g~~~l~~i~~------~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 54 ADGASEGLAALQQILA------IAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred cCCCCCHHHHHHHHHh------hCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 899999999985 34568999999999999999999999999999999999999999877653
No 59
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.61 E-value=3.6e-14 Score=113.25 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=107.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+.+||++||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.|
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~d~ii~d~~~ 57 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-------------------------GLRFGCVVTDVRM 57 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-------------------------cCCCCEEEEeCCC
Confidence 468999999999999999999999999999999998888775 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
++++|+++++.++. ..+.+|+|++++..+......++..|+.+|+.||++...+...+..++...
T Consensus 58 ~~~~~~~~~~~l~~------~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 58 PGIDGIELLRRLKA------RGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred CCCcHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999999985 345689999999888888999999999999999999999999998877754
No 60
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.60 E-value=2.1e-14 Score=131.29 Aligned_cols=116 Identities=21% Similarity=0.338 Sum_probs=106.1
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM 146 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~ 146 (230)
||||||++..+..+.+.|...|+.+..+.++.+++..+. ...||+||+|+.||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~DlVllD~~~p~~ 55 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-------------------------RGQPDLLITDVRMPGE 55 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEcCCCCCC
Confidence 689999999999999999999999999999999998876 5679999999999999
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+|+++++.+++ ..+.+|||++|+..+......++..|+++|+.||++.++|...+..++..
T Consensus 56 ~g~~ll~~l~~------~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 56 DGLDLLPQIKK------RHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CHHHHHHHHHH------hCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999986 24568999999999988899999999999999999999999999887653
No 61
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.60 E-value=4.1e-14 Score=117.72 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=96.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC-e-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA-G-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~-~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++|+||||++..+..+...|+..|. . +..+.++.+++..+. ...||++|+|+.
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-------------------------~~~~dlv~lDi~ 56 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-------------------------RLKPDVVFLDIQ 56 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeCC
Confidence 5899999999999999999998873 3 446789999988876 557999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
||+++|+++++.++. ....+||++|+.. +....+++.|+.+|+.||++.++|..++.++...
T Consensus 57 ~~~~~G~~~~~~l~~-------~~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 57 MPRISGLELVGMLDP-------EHMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCCCCHHHHHHHhcc-------cCCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999988852 1234688888764 4567889999999999999999999999888754
No 62
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.58 E-value=4.5e-14 Score=124.31 Aligned_cols=117 Identities=29% Similarity=0.328 Sum_probs=98.4
Q ss_pred cEEEEEeccHHHHHHHHHHHH-hcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~-~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++||+|||++..+..+.++|. ..++.+. .+.++.++++.+. ...||+|++|+.
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-------------------------~~~pDlVllD~~ 55 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-------------------------AQPPDVILMDLE 55 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-------------------------ccCCCEEEEcCC
Confidence 489999999999999999994 5678775 7899999999886 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCC--hHhHHHHHHcCCCeeEeCCC---------CHHHHHHHHHHHH
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT--ADNERECFNSGMDTFLNKPA---------QEHLLAAAIVETI 211 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~--~~~~~~~~~~G~~~~L~KP~---------~~~~L~~~l~~~l 211 (230)
||+|+|+++++.+++. .++|++++++... .....++++.|+++|+.||+ ..++|...|+.+.
T Consensus 56 mp~~~G~e~l~~l~~~-------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 56 MPRMDGVEATRRIMAE-------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CCCCCHHHHHHHHHHH-------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 9999999999999852 3489999998754 44566889999999999999 5667777777666
Q ss_pred Hh
Q 026988 212 AR 213 (230)
Q Consensus 212 ~~ 213 (230)
..
T Consensus 129 ~~ 130 (337)
T PRK12555 129 RL 130 (337)
T ss_pred hc
Confidence 53
No 63
>PRK13435 response regulator; Provisional
Probab=99.56 E-value=1.7e-13 Score=105.50 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=101.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+..++||++|+++.....+.+.|+..|+.+. .++++.++++.+. ...||++++|
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~dliivd 57 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-------------------------RRQPDVALVD 57 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-------------------------hcCCCEEEEe
Confidence 4467999999999999999999999999876 7888889888775 4579999999
Q ss_pred cCCC-CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 141 CQMG-SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp-~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.++ +.+|+++++.+++ ...+|+|++++..+ ...+...|+++|+.||++..+|...|+.++.+....
T Consensus 58 ~~~~~~~~~~~~~~~l~~-------~~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~ 125 (145)
T PRK13435 58 VHLADGPTGVEVARRLSA-------DGGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVGD 125 (145)
T ss_pred eecCCCCcHHHHHHHHHh-------CCCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCccc
Confidence 9998 5899999988874 23689999987543 245678999999999999999999999888765544
No 64
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.56 E-value=7.8e-14 Score=115.58 Aligned_cols=117 Identities=10% Similarity=0.154 Sum_probs=94.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
...++++|||+|..+..+..+|+. ++. +..+.++.+++..+ . +||+||+|+
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~--------------------------~-~~DvvllDi 60 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDI--------------------------S-SGSIILLDM 60 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccC--------------------------C-CCCEEEEEC
Confidence 345799999999999999999984 454 55677888887753 2 399999999
Q ss_pred CCCCCCHHHHH-HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHH--cCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 142 QMGSMDGCKAT-RVIRRLEAEAETGQSIPIIAFTALVTADNERECFN--SGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 142 ~mp~~dg~~l~-~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~--~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
.||+++|++++ +.++. ..+.++||++|+..+. ...++. .|+.+|+.|+.+.++|.++|+.++.+..
T Consensus 61 ~~p~~~G~~~~~~~i~~------~~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~ 129 (216)
T PRK10100 61 MEADKKLIHYWQDTLSR------KNNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred CCCCccHHHHHHHHHHH------hCCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCc
Confidence 99999999987 55775 3456899999998763 334444 5999999999999999999998887654
No 65
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.55 E-value=6.5e-14 Score=133.31 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=104.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||+|||++..+..+..+|...||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-------------------------~~~~Dlvl~d~~l 61 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-------------------------AGEIDCVVADHEP 61 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-------------------------ccCCCEEEEeccC
Confidence 469999999999999999999999999999999999999876 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHH--HHHHHHHHHHHh
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH--LLAAAIVETIAR 213 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~--~L~~~l~~~l~~ 213 (230)
|+++|++++++++. ..+.+|||++|+..+......++..|+.+|+.||.... .+..++...+..
T Consensus 62 p~~~g~~~l~~l~~------~~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 62 DGFDGLALLEAVRQ------TTAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred CCCcHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999985 34568999999999999999999999999999997643 666666666654
No 66
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.55 E-value=6.4e-13 Score=97.27 Aligned_cols=122 Identities=24% Similarity=0.396 Sum_probs=105.4
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.++|+++++++.....+...|...|+. +..+.++.+++..+. ...||++++|.
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~di~l~d~ 58 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-------------------------AGGFGFVISDW 58 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-------------------------ccCCCEEEEcC
Confidence 3479999999999999999999998884 777889998888765 56799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.+++++|+++++.++.. ...+.+|+++++..........++..|+++|+.||++..++...++.++.+
T Consensus 59 ~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 59 NMPNMDGLELLKTIRAD----GAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred CCCCCCHHHHHHHHHhC----CCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999852 123467999999888888888999999999999999999999999887654
No 67
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.55 E-value=2e-13 Score=123.16 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=107.6
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
+||+|||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||+
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~~~~ 58 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-------------------------REQPDIILLDVMMPG 58 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-------------------------hcCCCEEEEeCCCCC
Confidence 7999999999999999999999999999999999999886 567999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
++|+++++.++.. ...+.+|||++|+..+......++..|+++|+.||++.++|..++..++..
T Consensus 59 ~~g~~l~~~i~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 59 MDGFEVCRRLKSD----PATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred CCHHHHHHHHHcC----cccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999852 123468999999999999999999999999999999999999999887654
No 68
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.54 E-value=2.3e-13 Score=120.55 Aligned_cols=118 Identities=27% Similarity=0.367 Sum_probs=96.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhc-CCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKL-GAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
..++||+|||++..+..+...|... ++.+. .+.++.+++..+. ...||+|++|
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-------------------------~~~~DlVllD 56 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-------------------------KLNPDVITLD 56 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-------------------------hhCCCEEEEe
Confidence 3479999999999999999999876 78776 7899999999876 5679999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCC--hHhHHHHHHcCCCeeEeCCCCH---------HHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT--ADNERECFNSGMDTFLNKPAQE---------HLLAAAIVE 209 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~--~~~~~~~~~~G~~~~L~KP~~~---------~~L~~~l~~ 209 (230)
+.||+++|+++++.|++. .. +|+|++|+... ......+++.|+++|+.||+.. ..|..+++.
T Consensus 57 ~~mp~~dgle~l~~i~~~------~~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~ 129 (354)
T PRK00742 57 VEMPVMDGLDALEKIMRL------RP-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRA 129 (354)
T ss_pred CCCCCCChHHHHHHHHHh------CC-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHH
Confidence 999999999999999852 23 89999997543 3556788999999999999943 445556655
Q ss_pred HHH
Q 026988 210 TIA 212 (230)
Q Consensus 210 ~l~ 212 (230)
...
T Consensus 130 ~~~ 132 (354)
T PRK00742 130 AAR 132 (354)
T ss_pred Hhh
Confidence 543
No 69
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.54 E-value=4.4e-13 Score=107.46 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=104.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhc-CCeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKL-GAGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~-g~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.++||++||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~dlvl~d 56 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-------------------------QLEPDIVILD 56 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-------------------------hcCCCEEEEe
Confidence 3478999999999999999999876 4554 47788888887765 5679999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+.|++++|+++++.+++. .+.+|+|++|+..+......++..|+++|+.||++..+|..++...+.+.
T Consensus 57 ~~~~~~~~~~~~~~l~~~------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 57 LGLPGMNGLDVIPQLHQR------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred CCCCCCCHHHHHHHHHHH------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999852 35689999999988888899999999999999999999999999877653
No 70
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.52 E-value=2.6e-13 Score=111.78 Aligned_cols=109 Identities=8% Similarity=0.041 Sum_probs=89.3
Q ss_pred HHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE---EecCCCCCCHHH
Q 026988 77 QRIGIRMLKK---LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL---MDCQMGSMDGCK 150 (230)
Q Consensus 77 ~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl---~D~~mp~~dg~~ 150 (230)
+..+..+|.. .|+.+..+.+++++++.+. ...||++| +|+.||++||++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-------------------------~~~pd~vl~dl~d~~mp~~~Gl~ 57 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-------------------------RISFSAVIFSLSAMRSERREGLS 57 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-------------------------cCCCCEEEeeccccCCCCCCHHH
Confidence 4566777754 3566778999999999875 56789998 688899999999
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHH-HcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF-NSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~-~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
++++|++ ..+.+|||++|+..++.....++ +.|+++|+.||++.++|..+|+.++.+...
T Consensus 58 ~~~~l~~------~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~ 118 (207)
T PRK11475 58 CLTELAI------KFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQ 118 (207)
T ss_pred HHHHHHH------HCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcc
Confidence 9999986 34568999999987776555544 799999999999999999999999886543
No 71
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-13 Score=109.30 Aligned_cols=126 Identities=23% Similarity=0.244 Sum_probs=104.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..++||++||++..+..+...|...||. |.++.++..+..... ...||+||+|+
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-------------------------~~~pDvVildi 58 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-------------------------RLQPDVVILDI 58 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-------------------------hcCCCEEEEec
Confidence 3469999999999999999999999995 567888888888776 67899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcccc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSC 220 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~~~ 220 (230)
.||..|-.+-..+. ..+...|||++|+++++..+..+.++|+.+|+.||+++..|...|.-...+......+
T Consensus 59 e~p~rd~~e~~~~~-------~~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~~~L 130 (194)
T COG3707 59 EMPRRDIIEALLLA-------SENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEERRAL 130 (194)
T ss_pred CCCCccHHHHHHHh-------hcCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHHHHH
Confidence 99999843333222 2456789999999999999999999999999999999999999887777665554433
No 72
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.51 E-value=1.1e-12 Score=106.24 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=104.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-CCeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL-GAGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~-g~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+||+|||++..+..+.+.|... ++.+ ..+.++.+++..+. ...||+|++|+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~dlvl~d~ 60 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-------------------------SLDPDLILLDL 60 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEeC
Confidence 468999999999999999999765 4554 46889999988876 56799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.+++++|+++++.++. ..+..|+++++...+......++..|+++|+.||++..+|...+..++.+.
T Consensus 61 ~l~~~~~~~~~~~l~~------~~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 61 NMPGMNGLETLDKLRE------KSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred CCCCCcHHHHHHHHHH------hCCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999985 234679999999888888889999999999999999999999999988654
No 73
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.51 E-value=1e-12 Score=106.06 Aligned_cols=119 Identities=26% Similarity=0.379 Sum_probs=103.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHh-cCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKK-LGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+||++|+++..+..+...|.. .++.+. .+.++.+++..+. ...||+|++|+.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~ 61 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-------------------------RLDPDVILLDLN 61 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEecC
Confidence 6899999999999999999975 467765 6889999988775 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+++|+++++.+++ ..+..|+++++..........++..|+++|+.||++..+|..++..++.+.
T Consensus 62 ~~~~~~~~~~~~l~~------~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 127 (215)
T PRK10403 62 MKGMSGLDTLNALRR------DGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGS 127 (215)
T ss_pred CCCCcHHHHHHHHHH------hCCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 999999999999985 234578999998888888889999999999999999999999998876543
No 74
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.50 E-value=6.1e-13 Score=109.56 Aligned_cols=119 Identities=9% Similarity=0.108 Sum_probs=96.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC---eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA---GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.|+||||++..+..++.+|+..++ .+..+.++.+++..+. ...||+||+|+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-------------------------~~~pDlvLlDl 55 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-------------------------SLRPSVVFINE 55 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-------------------------ccCCCEEEEeC
Confidence 4689999999999999999987653 3456789999888775 56799999996
Q ss_pred C--CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe-eEeCCCCHHHHHHHHHHHHHhcc
Q 026988 142 Q--MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT-FLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 142 ~--mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~-~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
. |+..+|.++++.|++ ..+.++||++|+..+..... ++..|... |+.|+.++++|..+|+.++.+..
T Consensus 56 ~~~l~~~~g~~~i~~i~~------~~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~ 125 (207)
T PRK15411 56 DCFIHDASNSQRIKQIIN------QHPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKET 125 (207)
T ss_pred cccCCCCChHHHHHHHHH------HCCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCc
Confidence 6 888899999999986 34568999999987765543 44445544 88999999999999999987654
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-12 Score=114.25 Aligned_cols=103 Identities=27% Similarity=0.462 Sum_probs=91.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC--CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG--AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
+|||+|||.+..|..++++|...+ ..+..+.|+.+|++.+. ...||+|.+|+.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-------------------------~~~PDVi~ld~e 56 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-------------------------KLKPDVITLDVE 56 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-------------------------hcCCCEEEEecc
Confidence 699999999999999999999998 45678899999999998 678999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh--HhHHHHHHcCCCeeEeCCCC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA--DNERECFNSGMDTFLNKPAQ 199 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~--~~~~~~~~~G~~~~L~KP~~ 199 (230)
||.|||++++++|.+ ..++|||++|+.... +...++++.|+.+|+.||..
T Consensus 57 mp~mdgl~~l~~im~-------~~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 57 MPVMDGLEALRKIMR-------LRPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cccccHHHHHHHHhc-------CCCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 999999999999874 367999999886654 56778899999999999973
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.45 E-value=3.3e-12 Score=107.65 Aligned_cols=117 Identities=25% Similarity=0.290 Sum_probs=98.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..+||++||++..+..+...|+..|+.+. .+.++.+++..+. ...||+||+|+.
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-------------------------~~~~dlvi~d~~ 191 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-------------------------KTRPGLILADIQ 191 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-------------------------ccCCCEEEEecC
Confidence 34799999999999999999999999877 6889999998876 567999999999
Q ss_pred CCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+ ++|+++++.++. .. .+|+|++|+..+... .....++.+|+.||++.++|...|.+++...
T Consensus 192 ~~~~~~g~e~l~~l~~------~~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 192 LADGSSGIDAVNDILK------TF-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CCCCCCHHHHHHHHHH------hC-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 995 899999999885 22 689999998765443 3445678889999999999999998877654
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.37 E-value=2.3e-11 Score=85.21 Aligned_cols=112 Identities=36% Similarity=0.525 Sum_probs=97.8
Q ss_pred EEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCC
Q 026988 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147 (230)
Q Consensus 68 LiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~d 147 (230)
+++++++..+..+...+...|+.+..+.+..+++..+. ...||++++|..+++.+
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ii~~~~~~~~~ 55 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-------------------------EEKPDLILLDIMMPGMD 55 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-------------------------hCCCCEEEEecCCCCCc
Confidence 47899999999999999999999988999999888775 56799999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
|.++++.++.. .+.+|+++++..........++..|+.+|+.||++...|...+..+
T Consensus 56 ~~~~~~~l~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 56 GLELLRRIRKR------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred hHHHHHHHHHh------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 99999999852 3568999998877777788889999999999999999998887653
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.34 E-value=1.7e-11 Score=106.54 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=79.2
Q ss_pred EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEE
Q 026988 93 LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIA 172 (230)
Q Consensus 93 ~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ 172 (230)
.+.++.++++.+. ...||+|++|+.||+++|+++++.+++ ....+|||+
T Consensus 2 ~a~~g~~al~~l~-------------------------~~~pDlVL~D~~mp~~~Gle~~~~ir~------~~~~ipiI~ 50 (303)
T PRK10693 2 LAANGVDALELLG-------------------------GFTPDLIICDLAMPRMNGIEFVEHLRN------RGDQTPVLV 50 (303)
T ss_pred EeCCHHHHHHHHh-------------------------cCCCCEEEEeCCCCCCCHHHHHHHHHh------cCCCCcEEE
Confidence 4678888888876 667999999999999999999999986 235689999
Q ss_pred EecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHHhc
Q 026988 173 FTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIARK 214 (230)
Q Consensus 173 ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~~~ 214 (230)
+|+..+......+++.|+++|+.||+ +.++|..++.+.+...
T Consensus 51 lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 51 ISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999 5899999888776543
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.30 E-value=3.7e-11 Score=114.93 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=90.3
Q ss_pred cEEEEEeccHH--------HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCcc
Q 026988 65 LSVLLVEDQAV--------LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYD 135 (230)
Q Consensus 65 ~~iLiVdd~~~--------~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d 135 (230)
|+||+|||+.. .+..+...|+..||.|..+.++++|+..+. . ..||
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~-------------------------~~~~~D 55 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS-------------------------SNEAID 55 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-------------------------hcCCCc
Confidence 47999999995 689999999999999999999999999986 4 5799
Q ss_pred EEEEecCCCCCCHH----HHHHHHHHhhhhhhcCCCceEEEEecCCC--hHhHHHHHHcCCCeeEeCCCCHHHH-HHHHH
Q 026988 136 LILMDCQMGSMDGC----KATRVIRRLEAEAETGQSIPIIAFTALVT--ADNERECFNSGMDTFLNKPAQEHLL-AAAIV 208 (230)
Q Consensus 136 lvl~D~~mp~~dg~----~l~~~lr~~~~~~~~~~~~pii~ls~~~~--~~~~~~~~~~G~~~~L~KP~~~~~L-~~~l~ 208 (230)
+||+|++||+++|+ +++++||+ ....+|||++|+..+ ...-...++. +++|+.+--+-.++ ...|.
T Consensus 56 lVLLD~~LPd~dG~~~~~ell~~IR~------~~~~iPIIlLTar~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 128 (755)
T PRK15029 56 CLMFSYQMEHPDEHQNVRQLIGKLHE------RQQNVPVFLLGDREKALAAMDRDLLEL-VDEFAWILEDTADFIAGRAV 128 (755)
T ss_pred EEEEECCCCCCccchhHHHHHHHHHh------hCCCCCEEEEEcCCcccccCCHHHHHh-hheEEEecCCCHHHHHHHHH
Confidence 99999999999997 89999985 345799999999886 3333333333 77888887554444 33344
Q ss_pred HH
Q 026988 209 ET 210 (230)
Q Consensus 209 ~~ 210 (230)
..
T Consensus 129 ~~ 130 (755)
T PRK15029 129 AA 130 (755)
T ss_pred HH
Confidence 43
No 80
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.16 E-value=2.4e-10 Score=112.10 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=74.9
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||+++++|.+|.|++|+ .+|... ...... ........+.+||+|||++.++..
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~-------~~~~~~--------~~~~~~l~g~~vLlvdD~~~~r~~ 704 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLA-------ADPEVE--------EEEEKLLDGVTVLLDITSEEVRKI 704 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccC-------Cccccc--------ccccccCCCCEEEEEeCCHHHHHH
Confidence 6899999999999999999999999999 444311 100000 011123567899999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+..+|+.+|+.|..+.++ .. ...||+||+|+++
T Consensus 705 l~~~L~~~G~~v~~a~~~------~~-------------------------~~~~Dlvl~D~~~ 737 (894)
T PRK10618 705 VTRQLENWGATCITPDER------LI-------------------------SQEYDIFLTDNPS 737 (894)
T ss_pred HHHHHHHCCCEEEEcCcc------cc-------------------------CCCCCEEEECCCC
Confidence 999999999999988753 11 4569999999994
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=9e-10 Score=92.94 Aligned_cols=116 Identities=24% Similarity=0.330 Sum_probs=95.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC-Ce-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG-AG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++|+++||++..+..+..++.... ++ +..+.++.++++.+. ...||++++|+.
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~fldI~ 56 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ-------------------------GLRPDLVFLDIA 56 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh-------------------------ccCCCeEEEeec
Confidence 589999999999999999998432 22 236889999999887 558999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
||+++|+++.+.|+. ..+..+|+++|++. +....+++..+.+|+.||++.+.|...+......
T Consensus 57 ~~~~~G~ela~~i~~------~~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 57 MPDINGIELAARIRK------GDPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred cCccchHHHHHHhcc------cCCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 999999999999985 24567888999874 4455666888999999999999999999875543
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.72 E-value=3.1e-07 Score=90.33 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=126.5
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||+++++|..|.|++|+ .+|......+. ........+.+.+|+++||++..+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~--------------~~~~~~~~~~g~~ili~d~~~~~~~~ 551 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI--------------IDGLPTDCLAGKRLLYVEPNSAAAQA 551 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc--------------cccCCccccCCCeEEEEeCCHHHHHH
Confidence 6899999999999999999999999998 34431110000 00111223567899999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhh
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~ 159 (230)
+.++|..+|+.+..+.+..+ +. ...||++++|+.||++++...+.......
T Consensus 552 l~~~L~~~g~~v~~~~~~~~----l~-------------------------~~~~d~il~~~~~~~~~~~~~~~~~~~~~ 602 (919)
T PRK11107 552 TLDILSETPLEVTYSPTLSQ----LP-------------------------EAHYDILLLGLPVTFREPLTMLHERLAKA 602 (919)
T ss_pred HHHHHHHCCCEEEEcCCHHH----hc-------------------------cCCCCEEEecccCCCCCCHHHHHHHHHhh
Confidence 99999999999998888776 32 56799999999999887766544333211
Q ss_pred hhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 160 AEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 160 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.....+++++++.........+.+.|+++|+.||++..++...+....
T Consensus 603 ----~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 603 ----KSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----hhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 223456888888888888889999999999999999999998887654
No 83
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.36 E-value=6.4e-07 Score=80.87 Aligned_cols=91 Identities=24% Similarity=0.334 Sum_probs=78.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCc
Q 026988 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168 (230)
Q Consensus 89 ~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~ 168 (230)
+.|..+.++.+++..+. ...||.+++|++||+|+|+++++.+++. ..
T Consensus 13 ~~v~~a~~g~~~l~~~~-------------------------~~~~~~~lld~~m~~~~~~~~~~~lk~~--------~~ 59 (435)
T COG3706 13 KEVATAKKGLIALAILL-------------------------DHKPDYKLLDVMMPGMDGFELCRRLKAE--------PA 59 (435)
T ss_pred hhhhhccchHHHHHHHh-------------------------cCCCCeEEeecccCCcCchhHHHHHhcC--------Cc
Confidence 45666888888888876 7899999999999999999999999852 12
Q ss_pred eEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 169 PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 169 pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.++++|...+........++|++.+++||++...+..+......
T Consensus 60 ~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 60 TVVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred ceEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 38999999999999999999999999999999998887766554
No 84
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.05 E-value=5.8e-05 Score=55.84 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=74.3
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE-ecCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM-DCQMG 144 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~-D~~mp 144 (230)
||||||||..-+..+..+|+=.|+.+..+++.+- ..... ....+.+++ ....+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~-------------------------~~~~~~~~v~~g~~~ 54 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW-------------------------SSPWEACAVILGSCS 54 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh-------------------------hcCCcEEEEEecCch
Confidence 6999999999999999999999999888876433 12221 334444433 33333
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
...+.++.+-+ ..+++|++++......... ..+.+.|..|++..+|.+.|+++
T Consensus 55 --~~~~~l~~l~~------~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 55 --KLAELLKELLK------WAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred --hHHHHHHHHHh------hCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 34555666654 4578999999886655111 11677899999999999999865
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.88 E-value=0.00013 Score=43.42 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=47.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++++++++++.....+.+.+...|+.+..+.+..++...+. ...++++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-------------------------EEKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeccCC
Confidence 37899999999999999999999999888899988888775 45699999998754
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.56 E-value=0.0079 Score=46.27 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCcEEEEE----eccHHHHHHHHHHHHhcCCeEEEEcC---cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 63 EGLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVKD---GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
++.+||+. |.+..-...+..+|+..||+|..... .++..+... ...||
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-------------------------~~~~d 56 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-------------------------ETDAD 56 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCC
Confidence 45678877 88888888999999999999987653 455555554 56899
Q ss_pred EEEEecCCCCC--CHHHHHHHHHHhhhhhhcCCCceEEEEecCC------ChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 136 LILMDCQMGSM--DGCKATRVIRRLEAEAETGQSIPIIAFTALV------TADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 136 lvl~D~~mp~~--dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~------~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
+|.+...|... ...++++.+++. ..+.++ |++.+.. ..+....+.+.|++.++...-+.+++...|
T Consensus 57 ~V~lS~~~~~~~~~~~~~~~~L~~~-----~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l 130 (137)
T PRK02261 57 AILVSSLYGHGEIDCRGLREKCIEA-----GLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDL 130 (137)
T ss_pred EEEEcCccccCHHHHHHHHHHHHhc-----CCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 99999988743 235566777642 122444 4444433 344567889999999999999999999988
Q ss_pred HHHHHh
Q 026988 208 VETIAR 213 (230)
Q Consensus 208 ~~~l~~ 213 (230)
++.++.
T Consensus 131 ~~~~~~ 136 (137)
T PRK02261 131 KKDLNQ 136 (137)
T ss_pred HHHhcc
Confidence 877653
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.46 E-value=0.0067 Score=45.55 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=75.7
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEcC---cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCC
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVKD---GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~d 147 (230)
|.+..-...+..+|+..||+|..... .++..+... ...||+|.+...++...
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-------------------------~~~~d~V~iS~~~~~~~ 64 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-------------------------QEDVDVIGLSSLSGGHM 64 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCEEEEcccchhhH
Confidence 66677777888899999999886543 455555554 56899999988876422
Q ss_pred --HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 026988 148 --GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 148 --g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
--++++.+++ ....-..+++.+....+....+.++|++.|+..--+.++...-|+
T Consensus 65 ~~~~~~~~~L~~------~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 65 TLFPEVIELLRE------LGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 2445666664 223234566666666667788899999999999888888776554
No 88
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=97.45 E-value=0.0013 Score=49.10 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC--CCHHHHHHH
Q 026988 77 QRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS--MDGCKATRV 154 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~--~dg~~l~~~ 154 (230)
...+...|++.|+.+..+.+.++++..+. ....+++|++||. ++ ....++++.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~------------------------~~~~i~avvi~~d-~~~~~~~~~ll~~ 60 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIE------------------------SFTDIAAVVISWD-GEEEDEAQELLDK 60 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHH------------------------CTTTEEEEEEECH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHH------------------------hCCCeeEEEEEcc-cccchhHHHHHHH
Confidence 35678888889999999999999999997 3567899999997 21 124667888
Q ss_pred HHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCC-HHHHHHHHHHHHH
Q 026988 155 IRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAAAIVETIA 212 (230)
Q Consensus 155 lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~-~~~L~~~l~~~l~ 212 (230)
+|+ .+..+||.+++............-.-+++|+...-+ ++.+...|.....
T Consensus 61 i~~------~~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 61 IRE------RNFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp HHH------HSTT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred HHH------hCCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 886 467799999998775555555556668899988754 4555556665543
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.10 E-value=0.043 Score=41.90 Aligned_cols=111 Identities=8% Similarity=0.096 Sum_probs=77.0
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-C
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-M 146 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-~ 146 (230)
|-+..-...+..+|+..||+|.-.. +.++.++... ...+|+|.+...+.. +
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-------------------------e~~adii~iSsl~~~~~ 67 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV-------------------------EADVHVVGVSSLAGGHL 67 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-------------------------HcCCCEEEEcCchhhhH
Confidence 5566666788999999999987543 4566666655 568999999877642 2
Q ss_pred CH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 147 DG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 147 dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.. -++++.|++ .+.....|++-+....+......++|++.|+..--+..++...+...+.
T Consensus 68 ~~~~~~~~~L~~------~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 68 TLVPALRKELDK------LGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred HHHHHHHHHHHh------cCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 22 335566654 2222233555554556677889999999999998899998888877553
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.47 E-value=0.075 Score=39.37 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC-
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM- 146 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~- 146 (230)
|.+..-...+..+|+..||+|.... ..++..+.+. ...||+|.+...+...
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-------------------------~~~pdvV~iS~~~~~~~ 64 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-------------------------EEDADAIGLSGLLTTHM 64 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCEEEEeccccccH
Confidence 5666777889999999999986643 3344455544 5689999998886542
Q ss_pred -CHHHHHHHHHHhhhhhhcCC-CceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 147 -DGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 147 -dg~~l~~~lr~~~~~~~~~~-~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
+..++++.+|+. .+ .+ .|++.+.........+.+.|+|.|+..
T Consensus 65 ~~~~~~i~~l~~~------~~~~~-~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 65 TLMKEVIEELKEA------GLDDI-PVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHHHc------CCCCC-eEEEECCCCChhHHHHHHcCCeEEECC
Confidence 345667777752 23 34 455666555544567889999877764
No 91
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.26 E-value=0.034 Score=41.43 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=76.7
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+.+.+.++||.|........++|...+.+|+.-.+..+ + ....||++++.
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----l-------------------------p~~hYD~~Ll~ 58 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----L-------------------------PPAHYDMMLLG 58 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----c-------------------------Chhhhceeeec
Confidence 367889999999999999999999999988876554322 2 14569999999
Q ss_pred cCCCCCCHHHHHH-HHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 141 CQMGSMDGCKATR-VIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 141 ~~mp~~dg~~l~~-~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
+-.+-.+-..+-+ ++.+. -...+- +|+--........++..+.|+.+||.||+++..|...+
T Consensus 59 vavtfr~n~tm~~~~l~~A----l~mtd~-vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 59 VAVTFRENLTMQHERLAKA----LSMTDF-VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred ccccccCCchHHHHHHHHH----Hhhhcc-eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 9877544433321 22110 011122 22222333445677889999999999999999988733
No 92
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.21 E-value=0.22 Score=38.16 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=74.9
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-C
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-M 146 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-~ 146 (230)
|-+..-...+..+|+..||+|.-.. +.++.++... ...+|+|-+...|.. +
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-------------------------~~~adiVglS~l~~~~~ 66 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-------------------------ETKADAILVSSLYGHGE 66 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCEEEEecccccCH
Confidence 3444555678899999999987653 4555666554 568999999888863 3
Q ss_pred C-HHHHHHHHHHhhhhhhcCCCceEEEEecCC--ChH----hHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 147 D-GCKATRVIRRLEAEAETGQSIPIIAFTALV--TAD----NERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 147 d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~--~~~----~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
. --++.+.+++ .+..-+++++-+.. .++ ....+.+.|++..+...-+.+++...|++.++
T Consensus 67 ~~~~~~~~~l~~------~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 67 IDCKGLRQKCDE------AGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHHHHHHHHH------CCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 2 3446666765 22222446666532 122 23468899999999988899999988887653
No 93
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.04 E-value=0.1 Score=50.44 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=74.8
Q ss_pred cEEEEEeccH-HH-----HHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 65 LSVLLVEDQA-VL-----QRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 65 ~~iLiVdd~~-~~-----~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
++|++|+++- .. .+.|...|++.||.|..+.+..++...+. .....++|+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 56 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE------------------------HNPRICGVI 56 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh------------------------cccceeEEE
Confidence 4677777663 22 45678888999999999999999999876 256789999
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHH
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIA 212 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~ 212 (230)
+|+.-. ..++++.+|+ .+..+||+++........+....-.-.++|+..-- +.+.+...|.+...
T Consensus 57 ~~~~~~---~~~~~~~~~~------~~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 57 FDWDEY---SLDLCSDINQ------LNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred Eecccc---hHHHHHHHHH------hCCCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 996433 3558888886 45679999997755433322222233455555433 23343344444443
No 94
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=95.77 E-value=0.13 Score=49.81 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=73.2
Q ss_pred cEEEEEeccH------HHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 65 LSVLLVEDQA------VLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 65 ~~iLiVdd~~------~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
|+|++|+++. ...+.|...|++.||.|..+.+..++...+. .....++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~------------------------~~~~~~~~~ 56 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE------------------------NNARLCGVI 56 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh------------------------cccceeEEE
Confidence 3567776552 1246688889999999999999999999876 256789999
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHH
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIA 212 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~ 212 (230)
+|+.- ...++++.+|+ .+..+||+++........+....-.-.++|+..-- +.+.+...|.+...
T Consensus 57 ~~~~~---~~~~~~~~~~~------~~~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (714)
T PRK15400 57 FDWDK---YNLELCEEISK------MNENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTD 122 (714)
T ss_pred Eecch---hhHHHHHHHHH------hCCCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHH
Confidence 99643 22457888886 45679999997754333322222222445554332 34444444444443
No 95
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.15 E-value=0.92 Score=34.45 Aligned_cols=106 Identities=16% Similarity=0.090 Sum_probs=70.9
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEE---cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-CC
Q 026988 72 DQAVLQRIGIRMLKKLGAGVTLV---KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-MD 147 (230)
Q Consensus 72 d~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-~d 147 (230)
-+..-...+..+|+..||+|.-. -+.++.++... ...+|+|.+...|.. +.
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-------------------------~~~adiVglS~L~t~~~~ 65 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-------------------------ETDADAILVSSLYGHGEI 65 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCEEEEeccccCCHH
Confidence 34455567888999999998754 34555655554 568999999888864 43
Q ss_pred H-HHHHHHHHHhhhhhhcCCCceEEEEecCC--C----hHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 026988 148 G-CKATRVIRRLEAEAETGQSIPIIAFTALV--T----ADNERECFNSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 148 g-~~l~~~lr~~~~~~~~~~~~pii~ls~~~--~----~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
. -++++.+++. ....++ |++-+.. . .+....+.+.|++.++...-+++++...|+
T Consensus 66 ~~~~~~~~l~~~-----gl~~v~-vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 66 DCKGLREKCDEA-----GLKDIL-LYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred HHHHHHHHHHHC-----CCCCCe-EEEECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 3 4566777652 122444 4444432 1 234566889999999998888888877664
No 96
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=94.36 E-value=0.24 Score=43.31 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=46.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEec-CCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA-LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~-~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
....+|++|..+-. ..+.... + +...++++.+ ..+......++++|+.+||.+|++..+|.+.+.++
T Consensus 18 ~~~~~v~~~~~~~~-------~~~~~~~---p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 18 ARAPLVLVDADMAE-------ACAAAGL---P--RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred ccCCeEEECchhhh-------HHHhccC---C--CCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 34679999865411 1111111 1 2233555544 55678899999999999999999999999999876
Q ss_pred H
Q 026988 211 I 211 (230)
Q Consensus 211 l 211 (230)
.
T Consensus 86 ~ 86 (322)
T TIGR03815 86 D 86 (322)
T ss_pred c
Confidence 3
No 97
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.17 E-value=2 Score=33.15 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=80.0
Q ss_pred CCcEEEEE----eccHHHHHHHHHHHHhcCCeEEE---EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 63 EGLSVLLV----EDQAVLQRIGIRMLKKLGAGVTL---VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
++.|||+. |-+..-...+.+.|...||+|.. ..+.+|+.+..- ....|
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-------------------------~~dv~ 65 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-------------------------EEDVD 65 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-------------------------hcCCC
Confidence 45577665 66777778999999999999875 457777776653 55678
Q ss_pred EEEEecCCC-CCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 136 LILMDCQMG-SMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 136 lvl~D~~mp-~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+|.+...-. .++ ..++.+.+|+. +..--+++.-+.-.+++.....+.|++.++.--....+....+...+..
T Consensus 66 vIgvSsl~g~h~~l~~~lve~lre~------G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 66 VIGVSSLDGGHLTLVPGLVEALREA------GVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred EEEEEeccchHHHHHHHHHHHHHHh------CCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 777654322 122 23455566642 2222224556666677788888999999998778887777766655543
No 98
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=93.97 E-value=0.65 Score=34.06 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=57.9
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcC---cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC-CCC-
Q 026988 72 DQAVLQRIGIRMLKKLGAGVTLVKD---GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM-GSM- 146 (230)
Q Consensus 72 d~~~~~~~l~~~L~~~g~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m-p~~- 146 (230)
-.+.-...+..+|++.||++...+. .++..+.+. ...||+|.+...+ +..
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-------------------------~~~pd~V~iS~~~~~~~~ 66 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-------------------------AERPDVVGISVSMTPNLP 66 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-------------------------HTTCSEEEEEESSSTHHH
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-------------------------cCCCcEEEEEccCcCcHH
Confidence 3456678899999999999987732 244445454 4589999999844 333
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHH--cCCCeeEeC
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN--SGMDTFLNK 196 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~--~G~~~~L~K 196 (230)
...++++.+|+ ..++++| ++-+..-...-...++ .|+|..+.-
T Consensus 67 ~~~~l~~~~k~------~~p~~~i-v~GG~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 67 EAKRLARAIKE------RNPNIPI-VVGGPHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp HHHHHHHHHHT------TCTTSEE-EEEESSSGHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHh------cCCCCEE-EEECCchhcChHHHhccCcCcceecCC
Confidence 34566666664 3344444 4445444444444554 677765543
No 99
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.89 E-value=1.4 Score=35.87 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=66.0
Q ss_pred cEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 65 LSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 65 ~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
.+|++. |.+..=...+..+|+..||+|.... ..++.++.+. ...||+|
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-------------------------~~~~d~v 137 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-------------------------EHKPDIL 137 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCEE
Confidence 477777 7777778889999999999987543 3455666555 6689999
Q ss_pred EEecCCCCC--CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 138 LMDCQMGSM--DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 138 l~D~~mp~~--dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+...|+.. +..++++.+|+. .....++|++=-...+. .-+...|+|.|-.-
T Consensus 138 ~lS~~~~~~~~~~~~~i~~lr~~----~~~~~~~i~vGG~~~~~---~~~~~~GaD~~~~d 191 (201)
T cd02070 138 GLSALMTTTMGGMKEVIEALKEA----GLRDKVKVMVGGAPVNQ---EFADEIGADGYAED 191 (201)
T ss_pred EEeccccccHHHHHHHHHHHHHC----CCCcCCeEEEECCcCCH---HHHHHcCCcEEECC
Confidence 999988753 235566777752 11124555554433333 24567799977653
No 100
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=93.50 E-value=2.7 Score=41.06 Aligned_cols=120 Identities=8% Similarity=0.106 Sum_probs=79.6
Q ss_pred CCCcEEEEE----eccHHHHHHHHHHHHhcCCeEEEE---cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCc
Q 026988 62 LEGLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLV---KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134 (230)
Q Consensus 62 ~~~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (230)
.+..+|++. |.+..-...+..+|...||+|..- .+.+++.+... ...+
T Consensus 580 g~rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-------------------------~~~a 634 (714)
T PRK09426 580 GRRPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-------------------------ENDV 634 (714)
T ss_pred CCCceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-------------------------HcCC
Confidence 334466654 344555567889999999998532 24556666654 5678
Q ss_pred cEEEEecCCCCC--CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 135 DLILMDCQMGSM--DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 135 dlvl~D~~mp~~--dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
|+|.+...+... ..-++++.|++ .+..--.|++.+...+.......+.|+|+|+..-.+..+++..+.+.+.
T Consensus 635 ~ivvlcs~d~~~~e~~~~l~~~Lk~------~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 635 HVVGVSSLAAGHKTLVPALIEALKK------LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CEEEEeccchhhHHHHHHHHHHHHh------cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 998887766432 24467777775 2222112445555345555778899999999999999998888887774
No 101
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.07 E-value=4.4 Score=34.20 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCCHHHHHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~~~L~~~l~~~l~ 212 (230)
.++++.+++. ..+|||+=.+-..+++...+++.|+++++ .|.-++..+..+....+.
T Consensus 164 ~~~I~~I~e~-------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 164 PYNLRIIIER-------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHHh-------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 6778888751 45899999999999999999999999885 454556666666665554
No 102
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=92.96 E-value=1.9 Score=35.65 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred cEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 65 LSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 65 ~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
-+|++. |.+..=...+..+|+..||+|.... ..++.++.+. ...||+|
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~-------------------------~~~~~~V 143 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK-------------------------EHKADII 143 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCEE
Confidence 477777 7778888888999999999998764 3455555555 6689999
Q ss_pred EEecCCCC-CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHH---HHHcCCCeeEeC
Q 026988 138 LMDCQMGS-MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE---CFNSGMDTFLNK 196 (230)
Q Consensus 138 l~D~~mp~-~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~---~~~~G~~~~L~K 196 (230)
.+...|+. +. -.++++.+++ ....++|++=-+..+.+.... +...|+|.|-.-
T Consensus 144 ~lS~~~~~~~~~~~~~i~~L~~------~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 144 GLSGLLVPSLDEMVEVAEEMNR------RGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred EEccchhccHHHHHHHHHHHHh------cCCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 99998874 32 3446666664 234566555443333333322 245799877543
No 103
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.94 E-value=4.7 Score=34.10 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCCHHHHHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~~~L~~~l~~~l~ 212 (230)
.++++.+++. ..+|||+=.+-..+++...+++.|+++++ .|.-++..+..+....+.
T Consensus 164 ~~~i~~i~e~-------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 164 PYNLRIIIEQ-------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred HHHHHHHHHh-------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 6778888751 45899999999999999999999999885 454556666666655554
No 104
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.76 E-value=4.8 Score=29.05 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=35.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
-...+.+++...-. ..-..++..+|++ ++..+|++... +......+...|++..+.
T Consensus 60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~------~~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 60 IEKADAVVILTDDD-EENLLIALLAREL------NPDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp GGCESEEEEESSSH-HHHHHHHHHHHHH------TTTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred ccccCEEEEccCCH-HHHHHHHHHHHHH------CCCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 45688888876522 3345666777763 34477777764 456667778899987653
No 105
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.57 E-value=0.69 Score=37.46 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=53.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC-
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM- 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m- 143 (230)
++||+||+-..+--.|.+++.+.|..+.+..+....+..+. ...||.|++.-.-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-------------------------~~~pd~iviSPGPG 56 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-------------------------ALKPDAIVISPGPG 56 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-------------------------hcCCCEEEEcCCCC
Confidence 58999999999999999999999999988887743334443 4568999987543
Q ss_pred -CCCCHHHHHHHHHHhhhhhhcCCCceEEEEe
Q 026988 144 -GSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174 (230)
Q Consensus 144 -p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls 174 (230)
|...| -....|++ ....+||+-+.
T Consensus 57 ~P~d~G-~~~~~i~~------~~~~~PiLGVC 81 (191)
T COG0512 57 TPKDAG-ISLELIRR------FAGRIPILGVC 81 (191)
T ss_pred ChHHcc-hHHHHHHH------hcCCCCEEEEC
Confidence 22222 12333443 12457888665
No 106
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.09 E-value=8.7 Score=30.95 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=50.1
Q ss_pred CCCccEEEEecCCCCC--------CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CC
Q 026988 131 SPHYDLILMDCQMGSM--------DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KP 197 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~--------dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP 197 (230)
...+|.|.+.-..|.. .|++.++++++. ..++||++..+- +.+....+++.|++.+.. +.
T Consensus 122 ~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 122 AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA------VGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGA 194 (212)
T ss_pred HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh------cCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcC
Confidence 3468999887555533 357888888752 234888888765 678889999999998863 44
Q ss_pred CCHHHHHHHHHHHH
Q 026988 198 AQEHLLAAAIVETI 211 (230)
Q Consensus 198 ~~~~~L~~~l~~~l 211 (230)
-++.+....+...+
T Consensus 195 ~d~~~~~~~l~~~~ 208 (212)
T PRK00043 195 EDPEAAARALLAAF 208 (212)
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555554444
No 107
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.01 E-value=4.9 Score=28.56 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=26.5
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~ 94 (230)
+||||+..+.....+++.+++.|+.....
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 58999998888999999999999998888
No 108
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=89.42 E-value=5.8 Score=32.19 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=61.8
Q ss_pred EEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 66 SVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 66 ~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
+|++. |.+..-...+..+|+..||+|.... ..++.++.+. ...||+|.
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-------------------------~~~pd~v~ 140 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-------------------------KEKPLMLT 140 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-------------------------HcCCCEEE
Confidence 55544 4666667778899999999998654 3355555555 67899999
Q ss_pred EecCCCCC-CH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 139 MDCQMGSM-DG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 139 ~D~~mp~~-dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+...|+.. .. .++++.+|+. .....++ |++-+..-.. .-+.+.|+|.|-.
T Consensus 141 lS~~~~~~~~~~~~~i~~l~~~----~~~~~v~-i~vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 141 GSALMTTTMYGQKDINDKLKEE----GYRDSVK-FMVGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred EccccccCHHHHHHHHHHHHHc----CCCCCCE-EEEEChhcCH--HHHHHhCCcEEeC
Confidence 99988643 32 4456666641 1122344 4444433322 3456789998854
No 109
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=88.72 E-value=5.5 Score=35.86 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=27.3
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
..+|||+-....+......... ..+++..|-+.++|.++|..++...
T Consensus 343 ~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~~~ 389 (425)
T PRK05749 343 FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLTDP 389 (425)
T ss_pred hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhcCH
Confidence 3478885322222222222221 1246666889999999999888644
No 110
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.10 E-value=10 Score=32.15 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=52.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCC-HHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAAAIV 208 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~-~~~L~~~l~ 208 (230)
...||.|++|++-...|--++.+.++... ...++.++=.+..+...+.++++.|+++++.--+. .++..+.+.
T Consensus 38 ~~G~D~v~iD~EHg~~~~~~~~~~i~a~~-----~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 38 LAGFDWLVLDGEHAPNDVSTFIPQLMALK-----GSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred hcCCCEEEEccccCCCCHHHHHHHHHHHh-----hcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 45699999999999888888887777532 22344444445567888999999999999776554 555555444
No 111
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.85 E-value=12 Score=32.01 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=52.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHH-HHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH-LLAAAIV 208 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~-~L~~~l~ 208 (230)
...||.|++|++-...|--++...++.... ..+..++=....+...+.++++.|+++.+.--+... +..+.++
T Consensus 37 ~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~-----~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 37 TSGYDWLLIDGEHAPNTIQDLYHQLQAIAP-----YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HcCCCEEEEccccCCCCHHHHHHHHHHHHh-----cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 445999999999998888888877776432 223344444566788899999999999988776654 4444443
No 112
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=87.38 E-value=9.9 Score=28.17 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCeEEEEc--CcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEEecCCCCC-CHHHH
Q 026988 76 LQRIGIRMLKKLGAGVTLVK--DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILMDCQMGSM-DGCKA 151 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~~~~--~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~D~~mp~~-dg~~l 151 (230)
....+..+|.+.|+.+.... ..++.++.+. . ..||+|.+.+.-+.. ...++
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~-------------------------~~~~pdiv~~S~~~~~~~~~~~~ 58 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIK-------------------------ELLKPDVVGISLMTSAIYEALEL 58 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHH-------------------------HhcCCCEEEEeeccccHHHHHHH
Confidence 44677888988888766554 2233344333 3 689999999865543 35668
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHH-HHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERE-CFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~-~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
++.+|++ .++++|++=-...+ ..... ....++ ||+.+---...+.+.++.+.
T Consensus 59 ~~~ik~~------~p~~~iv~GG~~~t-~~p~~~~~~~~~-D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 59 AKIAKEV------LPNVIVVVGGPHAT-FFPEEILEEPGV-DFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred HHHHHHH------CCCCEEEECCcchh-hCHHHHhcCCCC-CEEEECCcHHHHHHHHHHHH
Confidence 8888864 33455554433322 22223 234455 57776544444555554433
No 113
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=86.73 E-value=16 Score=30.76 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=52.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-CCCCHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-KPAQEHLLAAAIVE 209 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-KP~~~~~L~~~l~~ 209 (230)
...+|.|++|++-...|.-++...++... .....+++= .+..+...+..++..|+++++. |--+.++..+.++.
T Consensus 31 ~~g~D~v~iDlEH~~~~~~~~~~~~~a~~----~~g~~~~VR-v~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 31 GAGFDWLLIDGEHAPNDVRTILSQLQALA----PYPSSPVVR-PAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHH----hcCCCcEEE-CCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 45699999999988888888888776532 112234444 4445677899999999998854 45567776666654
Q ss_pred HH
Q 026988 210 TI 211 (230)
Q Consensus 210 ~l 211 (230)
+-
T Consensus 106 ~~ 107 (249)
T TIGR02311 106 TR 107 (249)
T ss_pred cC
Confidence 44
No 114
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.94 E-value=0.46 Score=46.20 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.5
Q ss_pred cchhhhhhcCCCceeEEcccceeeee-eccCCCCCC
Q 026988 3 IGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNII 37 (230)
Q Consensus 3 I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~ 37 (230)
++|..++.+||++.++|++|+|++|+ .+|.+-.++
T Consensus 543 VVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTLaIi 578 (716)
T COG0643 543 VVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTLAII 578 (716)
T ss_pred HHHHHHHHcCCEEEEEecCCCCeEEEEecCcHHHHh
Confidence 68899999999999999999999999 566544443
No 115
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.87 E-value=20 Score=30.26 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=52.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCC-HHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAAAIV 208 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~-~~~L~~~l~ 208 (230)
...||.|++|++-..+|--++...++... ...++.++=....+...+.++++.|+++++.--++ .++..+.+.
T Consensus 31 ~~G~D~v~iD~EHg~~~~~~~~~~~~a~~-----~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 31 LAGFDWLLLDGEHAPNDVLTFIPQLMALK-----GSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred hcCCCEEEEecccCCCCHHHHHHHHHHHh-----hcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 45699999999999898888888887532 22333444445577888999999999999876655 455555543
No 116
>PRK10547 chemotaxis protein CheA; Provisional
Probab=85.31 E-value=0.5 Score=45.66 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=30.9
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCC
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNII 37 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~ 37 (230)
|+|+++.++.+||+++++|..|.|++|. .+|.+-.++
T Consensus 491 L~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltlai~ 528 (670)
T PRK10547 491 MDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTLAIL 528 (670)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechhhhh
Confidence 6789999999999999999999999998 555444333
No 117
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.86 E-value=32 Score=31.63 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+.+|.+++-|+. ....+..+.+..|..+..+.+..++.+.+. ...+|+||+
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-------------------------~~~~D~VLI 305 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-------------------------RDGSELILI 305 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-------------------------hCCCCEEEE
Confidence 3567888877661 223455555556666655544444444443 457899999
Q ss_pred ecCCCCCC--HHHHHHHHHHhhhhh-hcCCCceEEEEecCCChHhHHHHH----HcCCCee-EeC
Q 026988 140 DCQMGSMD--GCKATRVIRRLEAEA-ETGQSIPIIAFTALVTADNERECF----NSGMDTF-LNK 196 (230)
Q Consensus 140 D~~mp~~d--g~~l~~~lr~~~~~~-~~~~~~pii~ls~~~~~~~~~~~~----~~G~~~~-L~K 196 (230)
|. ++.. ..+.++.+.++.... ...+.-.++++++........... ..|.+++ ++|
T Consensus 306 DT--aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 306 DT--AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred eC--CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 97 3321 123344443322111 011234567777766654443332 3666665 455
No 118
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=84.73 E-value=13 Score=30.31 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=47.9
Q ss_pred HHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhh
Q 026988 82 RMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEA 160 (230)
Q Consensus 82 ~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~ 160 (230)
+.|++.+. -+....+.+++....+..++. . +=++.+.|-.-+.+++++.+++..
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~~g----------------------G--i~~iEiT~~t~~a~~~I~~l~~~~- 57 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALIEG----------------------G--IRAIEITLRTPNALEAIEALRKEF- 57 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHHHT----------------------T----EEEEETTSTTHHHHHHHHHHHH-
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHHHC----------------------C--CCEEEEecCCccHHHHHHHHHHHC-
Confidence 44555543 334445666676666655432 2 224555565567778888777532
Q ss_pred hhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHH
Q 026988 161 EAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204 (230)
Q Consensus 161 ~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~ 204 (230)
+++ +|=.-.-.+.+....+.++|++ |+.-|..-.++.
T Consensus 58 -----p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~ 94 (196)
T PF01081_consen 58 -----PDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVI 94 (196)
T ss_dssp -----TTS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHHH
T ss_pred -----CCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHH
Confidence 223 2323333466778888888888 666664444443
No 119
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=84.72 E-value=12 Score=34.12 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=42.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc---CCCeeEeCCCCHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS---GMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~---G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
.|++++=.. .+.-|..+++-+- ..+|||....... .+.... |-++++..|-+.+++.++|..+
T Consensus 332 aDv~V~pS~-~E~~g~~vlEAmA---------~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~l 397 (465)
T PLN02871 332 GDVFVMPSE-SETLGFVVLEAMA---------SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETL 397 (465)
T ss_pred CCEEEECCc-ccccCcHHHHHHH---------cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 567665322 2333445555443 3488886543222 223344 8889999999999999999988
Q ss_pred HHhcc
Q 026988 211 IARKS 215 (230)
Q Consensus 211 l~~~~ 215 (230)
+....
T Consensus 398 l~~~~ 402 (465)
T PLN02871 398 LADPE 402 (465)
T ss_pred HhCHH
Confidence 86443
No 120
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=83.73 E-value=10 Score=27.63 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=42.8
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEcC---cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC-
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVKD---GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM- 146 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~- 146 (230)
|.++.....+..++++.|+.+..... .++..+.+. ...||+|.+...+...
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-------------------------~~~pdiV~iS~~~~~~~ 64 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-------------------------EEDADVVGLSALSTTHM 64 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-------------------------HcCCCEEEEecchHhHH
Confidence 56677778889999999999886642 233334333 5679999999887653
Q ss_pred CHHHHHHHHHH
Q 026988 147 DGCKATRVIRR 157 (230)
Q Consensus 147 dg~~l~~~lr~ 157 (230)
..++.+..+++
T Consensus 65 ~~~~~~~~~~~ 75 (125)
T cd02065 65 EAMKLVIEALK 75 (125)
T ss_pred HHHHHHHHHHH
Confidence 34555666665
No 121
>PRK14974 cell division protein FtsY; Provisional
Probab=83.62 E-value=31 Score=30.56 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCccEEEEecCCCCC-CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHH--HHH--HcCCCee-EeC
Q 026988 131 SPHYDLILMDCQMGSM-DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER--ECF--NSGMDTF-LNK 196 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~-dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~--~~~--~~G~~~~-L~K 196 (230)
...+|+||+|.- +.+ .-.+++..|+.+... ..++.-++++++....+... ..+ ..+.+.+ |+|
T Consensus 220 ~~~~DvVLIDTa-Gr~~~~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTK 288 (336)
T PRK14974 220 ARGIDVVLIDTA-GRMHTDANLMDELKKIVRV--TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTK 288 (336)
T ss_pred hCCCCEEEEECC-CccCCcHHHHHHHHHHHHh--hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEee
Confidence 346899999985 211 133445555443221 23455566666644433332 222 3677776 555
No 122
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=83.53 E-value=2 Score=34.84 Aligned_cols=38 Identities=13% Similarity=0.379 Sum_probs=31.6
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
||+||....+-..+.++|.+.|+.+.++.+.+..++.+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~ 39 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI 39 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999999999999999999999998887764444444
No 123
>PRK13566 anthranilate synthase; Provisional
Probab=83.31 E-value=6.6 Score=38.45 Aligned_cols=39 Identities=33% Similarity=0.376 Sum_probs=33.9
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.+..+++|||||....+...+.++|++.|+++.++....
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~ 560 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF 560 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC
Confidence 456788999999998889999999999999998887654
No 124
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=83.25 E-value=5 Score=32.25 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=44.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe--E-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG--V-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~--v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+|++||-++.....+++.++..+.. + ....|...++..+.. ....||+|++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-----------------------~~~~fDiIflDP 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-----------------------KGEKFDIIFLDP 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-----------------------CTS-EEEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-----------------------cCCCceEEEECC
Confidence 48999999999999999999998853 3 345566666665531 156899999994
Q ss_pred CCCCCCH-HHHHHHHH
Q 026988 142 QMGSMDG-CKATRVIR 156 (230)
Q Consensus 142 ~mp~~dg-~~l~~~lr 156 (230)
--..... .+++..|.
T Consensus 123 PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 123 PYAKGLYYEELLELLA 138 (183)
T ss_dssp STTSCHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHH
Confidence 2222222 45666665
No 125
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=82.85 E-value=27 Score=32.50 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHhcC-CeEEEEcCc------HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 73 QAVLQRIGIRMLKKLG-AGVTLVKDG------EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 73 ~~~~~~~l~~~L~~~g-~~v~~~~~~------~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
.|.-...+...|++.| ++|...+.- ++..+.+. ...||+|.+-..-+.
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~-------------------------~~~pdvVgis~~t~~ 75 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLR-------------------------AHCPDLVLITAITPA 75 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHH-------------------------hcCcCEEEEecCccc
Confidence 4667788999999999 678776421 22223333 557999999765554
Q ss_pred CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHH-cCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 146 MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN-SGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 146 ~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~-~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.. ..++++.+|+. .+.++||+ -+..-.....+.+. ....||+..--....+.+.+..+.
T Consensus 76 ~~~a~~~~~~~k~~------~P~~~iV~-GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 76 IYIACETLKFARER------LPNAIIVL-GGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred HHHHHHHHHHHHHH------CCCCEEEE-cCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 32 45677777763 34455554 44332333344443 344457777666565665555543
No 126
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.77 E-value=25 Score=28.78 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+++++.+++. ..+||+...+-.+.++...+++.|++.++.=
T Consensus 161 ~~~~i~~i~~~-------~~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 161 DFALLKELLKA-------VGCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHh-------CCCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 46777777751 2589999888888999999999999987543
No 127
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=82.59 E-value=19 Score=31.47 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=42.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++=. ..+.-|..+++-+. ..+|||+.-... ..+....|..+++..|-+.+++..+|..++..
T Consensus 273 adi~v~pS-~~Eg~~~~~lEAma---------~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 273 LDLFVLPS-LAEGISNTILEAMA---------SGLPVIATAVGG----NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred cCEEEecc-ccccCchHHHHHHH---------cCCCEEEcCCCC----cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 56666422 22333555666554 347887643222 23345567789999999999999999988764
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 339 ~ 339 (374)
T TIGR03088 339 P 339 (374)
T ss_pred H
Confidence 3
No 128
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=82.35 E-value=11 Score=29.76 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc--CCeEEEEcCc---HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL--GAGVTLVKDG---EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~--g~~v~~~~~~---~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
.++.+|.++...+.....+...|.+. |.++.-+.++ .+..+.+...|+ ...||+
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~---------------------~~~pdi 104 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN---------------------ASGPDI 104 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH---------------------HcCCCE
Confidence 34679999999999999999999887 4455555554 223333333333 568999
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q 026988 137 ILMDCQMGSMDGCKATRVIRR 157 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr~ 157 (230)
|++-+.+|...-+ +...++
T Consensus 105 v~vglG~PkQE~~--~~~~~~ 123 (172)
T PF03808_consen 105 VFVGLGAPKQERW--IARHRQ 123 (172)
T ss_pred EEEECCCCHHHHH--HHHHHH
Confidence 9999999976643 455543
No 129
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=82.21 E-value=9.1 Score=32.53 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=52.6
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM 146 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~ 146 (230)
|-+.=.++.+...+.++|...-|.+..+.++++.++.+... ...+|++++.....
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~-----------------------~e~iDCLvle~~~~-- 57 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQH-----------------------REQIDCLVLEQSPL-- 57 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCT-----------------------TTT-SEEEEETTST--
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhc-----------------------hhccCEEEEecCCC--
Confidence 44444567777899999988889999999999999988632 56899999987654
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
-..++..+.+ .+.-+|+|++...
T Consensus 58 -~~~~~~~L~e------~g~LLPaVil~~~ 80 (283)
T PF07688_consen 58 -LPPLFNQLYE------QGILLPAVILGSS 80 (283)
T ss_dssp -THHHHHHHHH------CT----EEEES--
T ss_pred -cHHHHHHHHH------cCccccEEEEecC
Confidence 4556777775 5667899999663
No 130
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=82.13 E-value=25 Score=29.17 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=45.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|+++.-... +.-|..+++-+- ..+|+|+....... ......+..+++.++.+.+++.+.|..++.
T Consensus 252 ~ad~~i~ps~~-e~~~~~~~Ea~a---------~G~Pvi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 252 KASIFVLTSRF-EGFPMVLLEAMA---------FGLPVISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred hCCEEEeCccc-cccCHHHHHHHH---------cCCCEEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 36777765544 223455555443 35788764322222 223455568899999999999999999987
Q ss_pred hccCc
Q 026988 213 RKSHK 217 (230)
Q Consensus 213 ~~~~~ 217 (230)
....+
T Consensus 319 ~~~~~ 323 (348)
T cd03820 319 DEELR 323 (348)
T ss_pred CHHHH
Confidence 54433
No 131
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.85 E-value=41 Score=30.64 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+.+|.+|+-|+- ....+..+-+..|+.+..+.+..+..+.+.... ....+|+||+
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~---------------------~~~~~D~VLI 291 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT---------------------YVNCVDHILI 291 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH---------------------hcCCCCEEEE
Confidence 4568888887653 245666677777777777777777666555321 0246899999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHH----HcCCCee-EeC
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF----NSGMDTF-LNK 196 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~----~~G~~~~-L~K 196 (230)
|.-=-.-..-+.+..++.+... ..++..++++++.....+....+ ..+.+.+ ++|
T Consensus 292 DTAGr~~~d~~~l~EL~~l~~~--~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TK 351 (407)
T PRK12726 292 DTVGRNYLAEESVSEISAYTDV--VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITK 351 (407)
T ss_pred ECCCCCccCHHHHHHHHHHhhc--cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEc
Confidence 9841111223344444443211 23344455666544444444332 3556665 555
No 132
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=81.73 E-value=22 Score=29.61 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHH----HHH
Q 026988 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA----TRV 154 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l----~~~ 154 (230)
...+.+++.|..+-.+-+...-++.+... -...|.|++=.--|+..|..+ +++
T Consensus 101 ~~l~~Ir~~g~k~GlalnP~T~~~~i~~~-----------------------l~~vD~VlvMtV~PGf~GQ~fi~~~l~K 157 (223)
T PRK08745 101 RTIQLIKSHGCQAGLVLNPATPVDILDWV-----------------------LPELDLVLVMSVNPGFGGQAFIPSALDK 157 (223)
T ss_pred HHHHHHHHCCCceeEEeCCCCCHHHHHHH-----------------------HhhcCEEEEEEECCCCCCccccHHHHHH
Confidence 34456666677666665554444444433 234777766555677666433 234
Q ss_pred HHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHHHHHHHHHHHH
Q 026988 155 IRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 155 lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~L~~~l~~~l 211 (230)
+++++........-..|-+-+.-+.+.+..+.++|+|-+ +.|.-++.+..+.++..+
T Consensus 158 I~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 158 LRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 433322211111124577888888999999999999944 555445555555555443
No 133
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=81.71 E-value=33 Score=31.41 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+.+|.+|+-|+. ....+..+-+..|+.+..+.+..+....+.. ...+|+||+
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~------------------------~~~~DlVlI 305 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ------------------------LRDCDVILI 305 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH------------------------hCCCCEEEE
Confidence 3578999988773 2344555566677777777777766666652 235899999
Q ss_pred ecCC-CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHH----HHcCCCee-EeC
Q 026988 140 DCQM-GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC----FNSGMDTF-LNK 196 (230)
Q Consensus 140 D~~m-p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~----~~~G~~~~-L~K 196 (230)
|.-- ...+ ...+..++++-.. ...+.-..+++++........+. ...+.+.+ ++|
T Consensus 306 Dt~G~~~~d-~~~~~~L~~ll~~-~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 306 DTAGRSQRD-KRLIEELKALIEF-SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred eCCCCCCCC-HHHHHHHHHHHhc-cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 9742 1222 2222333322111 11122335666665555444332 24566555 555
No 134
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.57 E-value=43 Score=30.72 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+.+|.+++-|+. ....+..+.+..|+.+.++.+..+..+.+....+ ...+|+||+
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~---------------------~~~~DvVLI 326 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE---------------------EARVDYILI 326 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh---------------------ccCCCEEEE
Confidence 4567888887653 3445666666778888777777666555543210 235899999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh----HHHHHHcCCCee-EeC
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN----ERECFNSGMDTF-LNK 196 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~----~~~~~~~G~~~~-L~K 196 (230)
|.-=-...-.+.++.+++.-.. ..++-.++++++.....+ .......+.+.+ |+|
T Consensus 327 DTaGRs~kd~~lm~EL~~~lk~--~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 327 DTAGKNYRASETVEEMIETMGQ--VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred eCccccCcCHHHHHHHHHHHhh--cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 9741111123334444332111 223334555665433322 223334677776 455
No 135
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=81.38 E-value=3 Score=33.53 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=31.6
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
||+||........+..+|...|+.+.++.+..--++.+.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~ 40 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE 40 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH
Confidence 899999999999999999999999998886543334343
No 136
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=80.07 E-value=7 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=32.7
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~ 95 (230)
...+.+|+|++.+....+-+..+|.+.|..+..++
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~ 59 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCD 59 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeC
Confidence 46788999999999999999999999999999998
No 137
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=79.91 E-value=23 Score=31.41 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 131 SPHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
...+|+|++|..-.... -.+.+++||+.+ +. +.|+--.-...+....+..+|+|....-
T Consensus 119 ~~~~d~iviD~AhGhs~~~i~~ik~ir~~~------p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 119 VPQLKFICLDVANGYSEHFVEFVKLVREAF------PE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHhhC------CC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34699999999876544 467788888632 22 3333333667888899999999987544
No 138
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=79.90 E-value=29 Score=27.78 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=49.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcC--CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLG--AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
..-.+++++.+++..++.+.++++.|| |++....+-+++++.+. . ....|.++..
T Consensus 29 fGa~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k-~----------------------~G~vvhLtmy 85 (176)
T PRK03958 29 LGADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWK-D----------------------GGIVVHLTMY 85 (176)
T ss_pred cCCceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHH-h----------------------CCcEEEEEEe
Confidence 334589999999999999999999997 56889999999999886 2 1456788888
Q ss_pred ecCCCC
Q 026988 140 DCQMGS 145 (230)
Q Consensus 140 D~~mp~ 145 (230)
+....+
T Consensus 86 ga~~~~ 91 (176)
T PRK03958 86 GENIQD 91 (176)
T ss_pred cCCccc
Confidence 888765
No 139
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.57 E-value=26 Score=33.49 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=74.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccC--CcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG--SNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dlvl~D~ 141 (230)
..+|+|++-...-+ .+.+.|.+.|+++...+.-.+..+.+++ .+ ......|.. +-+....-.+.+++++-.
T Consensus 400 ~~~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~----~g--~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 400 KPQVIIVGFGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRK----YG--YKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred cCCEEEecCchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHh----CC--CeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 34788888888774 5667777788888888777776666542 11 112222222 223444455778877765
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
.-+ .+-..++..+|+ ..++++|++-+. +..+.....++|++..+.--
T Consensus 473 ~d~-~~n~~i~~~~r~------~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e~ 519 (601)
T PRK03659 473 NEP-EDTMKIVELCQQ------HFPHLHILARAR--GRVEAHELLQAGVTQFSRET 519 (601)
T ss_pred CCH-HHHHHHHHHHHH------HCCCCeEEEEeC--CHHHHHHHHhCCCCEEEccH
Confidence 543 233456677775 345678877664 56778888999999776543
No 140
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.13 E-value=49 Score=31.20 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=75.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCc--ccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN--LETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dlvl~D~~ 142 (230)
-+|+|++-.+.-+ .+.+.|.+.|+++...+.-.+..+.+++ ........|.... +....-.+.|.+++-..
T Consensus 418 ~hiiI~G~G~~G~-~la~~L~~~g~~vvvId~d~~~~~~~~~------~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGS-LLGEKLLAAGIPLVVIETSRTRVDELRE------RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHH------CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3788888888774 5666667778888888776666655542 1122222222222 33334457887777554
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
-.+.+ ..++..+|+. .+..+|++-+. +++......+.|+|..+ -| ...+...+.+.+.+
T Consensus 491 ~~~~~-~~iv~~~~~~------~~~~~iiar~~--~~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l~~ 549 (558)
T PRK10669 491 NGYEA-GEIVASAREK------RPDIEIIARAH--YDDEVAYITERGANQVV-MG--EREIARTMLELLET 549 (558)
T ss_pred ChHHH-HHHHHHHHHH------CCCCeEEEEEC--CHHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHhcC
Confidence 32222 2344555642 34577887664 45666677889999555 33 35555566655554
No 141
>PRK04148 hypothetical protein; Provisional
Probab=78.54 E-value=4.2 Score=31.09 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++.+|+.|+=- .-..+...|.+.|++|..++.-.++.+... ....+++.-|+.
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------------------------~~~~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAK-------------------------KLGLNAFVDDLF 68 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------------------------HhCCeEEECcCC
Confidence 34688888866 323456677788999999998888888776 334689999998
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHH
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~ 202 (230)
-|+++=++-+..|=+++|. ..-.+....-+.+.|++ ++.+|++-+.
T Consensus 69 ~p~~~~y~~a~liysirpp-------------~el~~~~~~la~~~~~~-~~i~~l~~e~ 114 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRPP-------------RDLQPFILELAKKINVP-LIIKPLSGEE 114 (134)
T ss_pred CCCHHHHhcCCEEEEeCCC-------------HHHHHHHHHHHHHcCCC-EEEEcCCCCC
Confidence 8876533222222111110 01112334445567777 7777776554
No 142
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=78.47 E-value=50 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=17.4
Q ss_pred CcEEEEEeccHH---HHHHHHHHHHhcCCeEEEE
Q 026988 64 GLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 64 ~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~ 94 (230)
+.+|++|+-|.. ....+..+....|..+...
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~ 156 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD 156 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEec
Confidence 457777776542 3344555555566655544
No 143
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=78.32 E-value=39 Score=28.35 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=44.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-....+.-|..+++-+. ..+|+|..... ...+....|..+++.++.+.+++..++..++..
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a---------~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA---------AGVPVIASDIG----GMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH---------CCCCEEECCCC----CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 56776543323445556666554 34777764322 234445667789999999999999999998874
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 330 ~ 330 (359)
T cd03823 330 P 330 (359)
T ss_pred h
Confidence 3
No 144
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=78.09 E-value=7.1 Score=33.68 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEE--EEecCCChHhHHHHHHcCCCee-----EeCCCCHHHHHHHHHHHHHhccCc
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPII--AFTALVTADNERECFNSGMDTF-----LNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii--~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
.++++++.+++ ...+||| ...+-.++++...+++.|++++ |.|.-++.....++...+......
T Consensus 184 ~~~elLkei~~-------~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~~~~ 254 (287)
T TIGR00343 184 VPVELLLEVLK-------LGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHYDNP 254 (287)
T ss_pred CCHHHHHHHHH-------hCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHcCCH
Confidence 57888888875 2358998 6677778999999999999988 455557788777777777654433
No 145
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=77.73 E-value=4.2 Score=32.70 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=30.8
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
||+||....+...+.++|.+.|+.+.++.+.+..++.+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~ 39 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADI 39 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999999999999999999999988887754333333
No 146
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=77.66 E-value=23 Score=30.61 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEE--EEecCCChHhHHHHHHcCCCeeE-----eCCCCHHHHHHHHHHHHHhccCc
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPII--AFTALVTADNERECFNSGMDTFL-----NKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii--~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
.++++++.+.+ ...+||| ...+-.++++...+++.|++.++ .+.-++......+...+......
T Consensus 181 ~d~elLk~l~~-------~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~~~ 251 (283)
T cd04727 181 APYELVKETAK-------LGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDP 251 (283)
T ss_pred CCHHHHHHHHH-------hcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcCCH
Confidence 47788888875 1348997 67777799999999999999884 44446777777777777654443
No 147
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.67 E-value=37 Score=29.26 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=43.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++=.. .+.-|..+++-+. ..+|+|+.... ...+....|.++++.+|-+.+++..++..++..
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma---------~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA---------CGVPVVASNAG----GIPEVVKHGETGFLVDVGDVEAMAEYALSLLED 336 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH---------cCCCEEEeCCC----CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 567665433 3334555555543 34788874332 234456677889999999999999999888764
No 148
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=76.58 E-value=5.6 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=30.5
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
||+||........+.++|...|+.+.+..+....++.+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~ 39 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEI 39 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHH
Confidence 89999999999999999999999988877543323333
No 149
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.32 E-value=36 Score=29.41 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=56.4
Q ss_pred EEEEEeccHHHH--------HHHHHHHHhcCC--eE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCc
Q 026988 66 SVLLVEDQAVLQ--------RIGIRMLKKLGA--GV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134 (230)
Q Consensus 66 ~iLiVdd~~~~~--------~~l~~~L~~~g~--~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (230)
.|||=|++-... ..+.+.=...++ .+ ..+.+.+++.+.+. ..+
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~--------------------------~ga 214 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA--------------------------AGV 214 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh--------------------------cCC
Confidence 466666665432 233333333443 33 46889999988874 458
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 135 dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
|+|++|-.-| .+--+++..++ ...++-.|+.-+.+.+......|+|-.
T Consensus 215 DiImLDn~s~-e~l~~av~~~~----------~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 215 DTIMLDNFSL-DDLREGVELVD----------GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred CEEEECCCCH-HHHHHHHHHhC----------CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 9999994322 22222333332 123788899899999999999999833
No 150
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=75.88 E-value=27 Score=30.06 Aligned_cols=95 Identities=16% Similarity=0.241 Sum_probs=59.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCe--EEEE--cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAG--VTLV--KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~~~--~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
.++...++.+||.-..+..+. .+|.. +... .+..+....+..... ...-=.
T Consensus 27 ~L~~~D~iaaEDTR~t~~LL~----~~~I~~~~is~h~hne~~~~~~li~~l~---------------------~g~~va 81 (275)
T COG0313 27 VLKEVDVIAAEDTRVTRKLLS----HLGIKTPLISYHEHNEKEKLPKLIPLLK---------------------KGKSVA 81 (275)
T ss_pred HHhhCCEEEEeccHHHHHHHH----HhCCCCceecccCCcHHHHHHHHHHHHh---------------------cCCeEE
Confidence 456678999999987754444 34442 3333 355555555544332 233347
Q ss_pred EEEecCCCCCC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCC
Q 026988 137 ILMDCQMGSMD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGM 190 (230)
Q Consensus 137 vl~D~~mp~~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~ 190 (230)
++.|..||..+ |+.+++..++ ..++|+.+.+.+. .......+|.
T Consensus 82 lVSDAG~P~ISDPG~~LV~~a~~--------~gi~V~~lPG~sA--~~tAL~~SGl 127 (275)
T COG0313 82 LVSDAGTPLISDPGYELVRAARE--------AGIRVVPLPGPSA--LITALSASGL 127 (275)
T ss_pred EEecCCCCcccCccHHHHHHHHH--------cCCcEEecCCccH--HHHHHHHcCC
Confidence 89999999754 9999999885 3489999887543 3334444553
No 151
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=75.69 E-value=29 Score=27.57 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCccEEEEecCCCC--------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQMGS--------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~--------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
...+|.|.++-..+. ..|++.++++.+. .+.+||+++-+- +.+......+.|++++.
T Consensus 114 ~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~------~~~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 114 AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT------SIDIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh------cCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 346889887765542 2378888887642 234888888665 57888888999999764
No 152
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=75.67 E-value=50 Score=28.18 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=51.6
Q ss_pred EEEEecCCCCCCH-----HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCCHHHHHH
Q 026988 136 LILMDCQMGSMDG-----CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQEHLLAA 205 (230)
Q Consensus 136 lvl~D~~mp~~dg-----~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~~~L~~ 205 (230)
..+|-+.-|-.+| ...++.|++ ..++|||+=.+-..+++...+++.|+|+.+ .|--++.++..
T Consensus 160 ~aVMPlgsPIGSg~Gl~n~~~l~~i~e-------~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~ 232 (267)
T CHL00162 160 ATVMPLGSPIGSGQGLQNLLNLQIIIE-------NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAK 232 (267)
T ss_pred eEEeeccCcccCCCCCCCHHHHHHHHH-------cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHH
Confidence 4556666664443 345666663 356999999999999999999999999884 56677888888
Q ss_pred HHHHHHH
Q 026988 206 AIVETIA 212 (230)
Q Consensus 206 ~l~~~l~ 212 (230)
+++....
T Consensus 233 a~~~AV~ 239 (267)
T CHL00162 233 AMKLAVQ 239 (267)
T ss_pred HHHHHHH
Confidence 7766554
No 153
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=75.56 E-value=9 Score=31.02 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=39.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC--eEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA--GVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.++++||-|......+.+.++..+. .+..+ .|...++..+. ...+||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~------------------------~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG------------------------TREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC------------------------CCCcccEEEeCC
Confidence 4899999999999999999998883 34433 34444444332 123599999996
Q ss_pred CCC
Q 026988 142 QMG 144 (230)
Q Consensus 142 ~mp 144 (230)
--.
T Consensus 123 Py~ 125 (187)
T COG0742 123 PYA 125 (187)
T ss_pred CCc
Confidence 544
No 154
>PLN02335 anthranilate synthase
Probab=75.53 E-value=7.1 Score=32.33 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
+..+||+||........+.+.|.+.|+.+.++...
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~ 51 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRND 51 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECC
Confidence 34699999976777788999999999988887653
No 155
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.50 E-value=44 Score=27.51 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=55.2
Q ss_pred HHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHh
Q 026988 80 GIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158 (230)
Q Consensus 80 l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~ 158 (230)
+.+.|.+.+. .+....+.++++...+..++ ..+++ +.+.|-.-++++.++.+++.
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~----------------------~Gi~~--iEitl~~~~~~~~I~~l~~~ 63 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVA----------------------GGLPV--LEVTLRTPAALEAIRLIAKE 63 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHH----------------------cCCCE--EEEecCCccHHHHHHHHHHH
Confidence 3345555554 45556677888887776542 23443 33444445788888888753
Q ss_pred hhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHH
Q 026988 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206 (230)
Q Consensus 159 ~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~ 206 (230)
.+++ +|-.-.-.+.+....+.++|++ |+.-|....++.+.
T Consensus 64 ------~p~~-~IGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~vi~~ 103 (212)
T PRK05718 64 ------VPEA-LIGAGTVLNPEQLAQAIEAGAQ-FIVSPGLTPPLLKA 103 (212)
T ss_pred ------CCCC-EEEEeeccCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 2232 2333333456778888899988 66666443354443
No 156
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=75.39 E-value=15 Score=28.97 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc--CCeEEEEcCc---HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL--GAGVTLVKDG---EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~--g~~v~~~~~~---~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
.++.+|.+++..+.....+.+.|++. |.++.-..++ .+....+...|+ ...||+
T Consensus 44 ~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~---------------------~~~pdi 102 (171)
T cd06533 44 QKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN---------------------ASGADI 102 (171)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH---------------------HcCCCE
Confidence 34689999999999999998888876 3344432222 111111222222 668999
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q 026988 137 ILMDCQMGSMDGCKATRVIRR 157 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr~ 157 (230)
|++-+.+|...-+ +...++
T Consensus 103 v~vglG~PkQE~~--~~~~~~ 121 (171)
T cd06533 103 LFVGLGAPKQELW--IARHKD 121 (171)
T ss_pred EEEECCCCHHHHH--HHHHHH
Confidence 9999999977643 445543
No 157
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=75.38 E-value=26 Score=29.56 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=58.0
Q ss_pred HHHHHHhcCCeEEEEcCcHHH-HHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCH-----HHHHH
Q 026988 80 GIRMLKKLGAGVTLVKDGEAA-VEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG-----CKATR 153 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~a-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg-----~~l~~ 153 (230)
-.+.|-+.||.|....+.+=. .+.|.+ .. -..+|-+.-|-.+| ...++
T Consensus 115 Aae~Lv~eGF~VlPY~~~D~v~akrL~d------------------------~G--caavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 115 AAEILVKEGFVVLPYCTDDPVLAKRLED------------------------AG--CAAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp HHHHHHHTT-EEEEEE-S-HHHHHHHHH------------------------TT---SEBEEBSSSTTT---SSTHHHHH
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHH------------------------CC--CCEEEecccccccCcCCCCHHHHH
Confidence 356777889998865444332 222321 11 13456666664444 34566
Q ss_pred HHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC-----CCCHHHHHHHHHHHH
Q 026988 154 VIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK-----PAQEHLLAAAIVETI 211 (230)
Q Consensus 154 ~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K-----P~~~~~L~~~l~~~l 211 (230)
.|++. .++|||+=.+-..+.+...+++.|+|++|.- --++-....+.+...
T Consensus 169 ~i~~~-------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV 224 (247)
T PF05690_consen 169 IIIER-------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAV 224 (247)
T ss_dssp HHHHH-------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHh-------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHH
Confidence 66641 2699999999999999999999999999864 445666665555444
No 158
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=75.33 E-value=10 Score=32.77 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEE--EEecCCChHhHHHHHHcCCCeeE-----eCCCCHHHHHHHHHHHHHhccCccc
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPII--AFTALVTADNERECFNSGMDTFL-----NKPAQEHLLAAAIVETIARKSHKFS 219 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii--~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~~~L~~~l~~~l~~~~~~~~ 219 (230)
.++++++.+++ ...+||| ...+-.++++...+++.|++.++ .|.-++.+...++...+........
T Consensus 190 ~~~elL~ei~~-------~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~ 262 (293)
T PRK04180 190 APYELVKEVAE-------LGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYDDPEV 262 (293)
T ss_pred CCHHHHHHHHH-------hCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 47888888875 2358998 66776789999999999999884 4555788888888887776555443
Q ss_pred chh
Q 026988 220 CDE 222 (230)
Q Consensus 220 ~~~ 222 (230)
+.+
T Consensus 263 ~~~ 265 (293)
T PRK04180 263 LAE 265 (293)
T ss_pred HHH
Confidence 333
No 159
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=75.30 E-value=34 Score=26.03 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcH--HHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGE--AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~--~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
....++++++.+.. ..+....+..+. .+....... +..+.+. ..|+++
T Consensus 46 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~---------------------------~~di~v 97 (172)
T PF00534_consen 46 PNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYK---------------------------SSDIFV 97 (172)
T ss_dssp TTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHH---------------------------HTSEEE
T ss_pred CCeEEEEEcccccc-cccccccccccccccccccccccccccccccc---------------------------cceecc
Confidence 45677777744333 335555555444 344444333 4444443 256777
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcc
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~ 218 (230)
+=... +.-|..+++-+- ..+|+|+.- . .........+..+++..+.+.+++..+|..++.......
T Consensus 98 ~~s~~-e~~~~~~~Ea~~---------~g~pvI~~~-~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 98 SPSRN-EGFGLSLLEAMA---------CGCPVIASD-I---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp E-BSS-BSS-HHHHHHHH---------TT-EEEEES-S---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cccccccccccc---------cccceeecc-c---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHH
Confidence 65555 444555666554 346666433 2 223455677789999999999999999999998774444
Q ss_pred cchhh
Q 026988 219 SCDEQ 223 (230)
Q Consensus 219 ~~~~~ 223 (230)
.....
T Consensus 164 ~l~~~ 168 (172)
T PF00534_consen 164 KLGKN 168 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=75.19 E-value=13 Score=30.86 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=42.6
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCe--EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAG--VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
++.-+|-|+...+.-++.+++.|+. +..... .++++.+... ....||+||+|..=
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~----------------------~~~~fDliFIDadK 142 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL----------------------LDGSFDLVFIDADK 142 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc----------------------cCCCccEEEEeCCh
Confidence 8999999999999999999999873 434332 4556665521 15789999999875
Q ss_pred CC
Q 026988 144 GS 145 (230)
Q Consensus 144 p~ 145 (230)
+.
T Consensus 143 ~~ 144 (219)
T COG4122 143 AD 144 (219)
T ss_pred hh
Confidence 43
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=75.17 E-value=21 Score=29.24 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=41.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+-+|.-+|-++.....-++.++..|+ ++.. ..++.+.+..+.. .. ...+||+||+|
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~---~~------------------~~~~fD~VFiD 128 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN---DG------------------EEGQFDFVFID 128 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH---TT------------------TTTSEEEEEEE
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh---cc------------------CCCceeEEEEc
Confidence 34999999999999999999999887 4443 3556666655541 10 02479999999
Q ss_pred cC
Q 026988 141 CQ 142 (230)
Q Consensus 141 ~~ 142 (230)
..
T Consensus 129 a~ 130 (205)
T PF01596_consen 129 AD 130 (205)
T ss_dssp ST
T ss_pred cc
Confidence 85
No 162
>PRK10742 putative methyltransferase; Provisional
Probab=74.98 E-value=32 Score=29.21 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhc------CC----eEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKL------GA----GVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~------g~----~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (230)
.|.+|..||.++.....+..-|... +. ++.+ ..| +++.|... .
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d---a~~~L~~~-----------------------~ 162 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS---SLTALTDI-----------------------T 162 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc---HHHHHhhC-----------------------C
Confidence 3668999999999999999999874 21 2222 223 33333311 3
Q ss_pred CCccEEEEecCCCCCCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 132 PHYDLILMDCQMGSMDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..||+|++|-+.|...- -...+.+|-.+. ++-......+....+++..-.-++.|
T Consensus 163 ~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~----------l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 163 PRPQVVYLDPMFPHKQKSALVKKEMRVFQS----------LVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred CCCcEEEECCCCCCCccccchhhhHHHHHH----------hcCCCCChHHHHHHHHHhcCceEEEe
Confidence 46999999999987442 112333332100 11223345566777777776777777
No 163
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=74.91 E-value=14 Score=31.88 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=47.3
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+.+. ..+|+|++| +|+..+-.+.++.+++. .+ -.++
T Consensus 193 VEv~tleea~ea~~--------------------------~GaDiI~lD-n~~~e~l~~~v~~l~~~------~~-~~~l 238 (277)
T TIGR01334 193 VEADTIEQALTVLQ--------------------------ASPDILQLD-KFTPQQLHHLHERLKFF------DH-IPTL 238 (277)
T ss_pred EECCCHHHHHHHHH--------------------------cCcCEEEEC-CCCHHHHHHHHHHHhcc------CC-CEEE
Confidence 45678888888874 458999999 44444444445544421 12 2467
Q ss_pred EEecCCChHhHHHHHHcCCCee
Q 026988 172 AFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
-.|+.-+.+.+......|+|-+
T Consensus 239 easGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 239 AAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred EEECCCCHHHHHHHHhcCCCEE
Confidence 8888889999999999998854
No 164
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=74.71 E-value=53 Score=30.19 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=44.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc------CCCeeEeCCCCHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS------GMDTFLNKPAQEHLLAAA 206 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~------G~~~~L~KP~~~~~L~~~ 206 (230)
..|++++-.. .+.-|..+++-+- ..+|||. |..... .+.... |..+++..|-+.+++.++
T Consensus 370 ~aDv~vlpS~-~Eg~p~~vlEAma---------~G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~a 435 (475)
T cd03813 370 KLDVLVLTSI-SEGQPLVILEAMA---------AGIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARA 435 (475)
T ss_pred hCCEEEeCch-hhcCChHHHHHHH---------cCCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHH
Confidence 4677776543 3334555655553 3578876 332222 222222 678999999999999999
Q ss_pred HHHHHHhccC
Q 026988 207 IVETIARKSH 216 (230)
Q Consensus 207 l~~~l~~~~~ 216 (230)
|.+++.....
T Consensus 436 i~~ll~~~~~ 445 (475)
T cd03813 436 ILRLLKDPEL 445 (475)
T ss_pred HHHHhcCHHH
Confidence 9998875443
No 165
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=74.67 E-value=68 Score=29.51 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=22.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
...+|+||+|.-=-...--++++.++..... ..+.-.++++.+.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~--~~p~e~lLVlda~ 223 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEA--IQPDNIIFVMDGS 223 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhh--cCCcEEEEEeccc
Confidence 3468999999852111223455555554321 2233445555543
No 166
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=74.24 E-value=47 Score=28.01 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCeEEEEcCcHHHH-HHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCH-----HHHH
Q 026988 79 IGIRMLKKLGAGVTLVKDGEAAV-EAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG-----CKAT 152 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~~~~~al-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg-----~~l~ 152 (230)
.-.++|-+.||.|....+.+=.+ +.|.+ . . -..+|-+--|-.+| ...+
T Consensus 121 ~Aae~Lv~eGF~VlPY~~dD~v~arrLee------------------------~-G-caavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 121 KAAEQLVKEGFVVLPYTTDDPVLARRLEE------------------------A-G-CAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred HHHHHHHhCCCEEeeccCCCHHHHHHHHh------------------------c-C-ceEeccccccccCCcCcCCHHHH
Confidence 34567777899888665443322 22321 1 1 24566666664444 3345
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC-----CCCHHHHHHHHHH
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK-----PAQEHLLAAAIVE 209 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K-----P~~~~~L~~~l~~ 209 (230)
+.|++ ..++|||+=.+-..+.+...+++.|+|..|.- --++-...++...
T Consensus 175 ~iiie-------~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~ 229 (262)
T COG2022 175 EIIIE-------EADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFAL 229 (262)
T ss_pred HHHHH-------hCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHH
Confidence 55653 24799999999999999999999999999864 2344444444443
No 167
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.86 E-value=24 Score=26.06 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=46.4
Q ss_pred cEEEEecCCC---CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC-CCHHHHHHHHHHH
Q 026988 135 DLILMDCQMG---SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP-AQEHLLAAAIVET 210 (230)
Q Consensus 135 dlvl~D~~mp---~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP-~~~~~L~~~l~~~ 210 (230)
.+-++.+..| +.-|+...+.||++.. - .--|--++..-.+...-..++|+|.|..+. .+.+...+.+...
T Consensus 19 ~l~lI~i~FP~F~DGRgfS~ArlLR~r~g-----y-~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~f 92 (110)
T PF06073_consen 19 RLPLIAIDFPKFTDGRGFSQARLLRERYG-----Y-TGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDF 92 (110)
T ss_pred CCCEEEEECCCcCCchHhHHHHHHHHHcC-----C-CCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhC
Confidence 3444555556 4457999999995322 1 123445677778888888999999998885 6666666655443
No 168
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.86 E-value=31 Score=29.71 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=58.7
Q ss_pred EEEEEeccHHHHHHHHHHHHh---cC--C-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 66 SVLLVEDQAVLQRIGIRMLKK---LG--A-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~---~g--~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.||+-|++-... -+.+.+.. .. . -...+.+.+++.+.+. ..+|+|++
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~--------------------------agaDiI~L 208 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK--------------------------AGADIIML 208 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH--------------------------cCcCEEEE
Confidence 377777775544 44444432 22 1 2345788899988875 45899999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
|-..|+ +--++...++.. ...+-..+..|+.-+.+.+....+.|+|.+
T Consensus 209 Dn~~~e-~l~~~v~~l~~~-----~~~~~~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 209 DNMTPE-EIREVIEALKRE-----GLRERVKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred CCCCHH-HHHHHHHHHHhc-----CcCCCEEEEEECCCCHHHHHHHHHcCCCEE
Confidence 965432 222333334321 111234677788889999999999999854
No 169
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=73.76 E-value=21 Score=30.07 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=42.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+.+.+||+|+||...--.+. |....-++.+++--+..++.+...+...+..-.-...+--..+-..-...+|++++|
T Consensus 42 dL~gk~il~lGDDDLtSlA~a--l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 42 DLEGKRILFLGDDDLTSLALA--LTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp -STT-EEEEES-TT-HHHHHH--HHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-
T ss_pred cccCCEEEEEcCCcHHHHHHH--hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeC
Confidence 467889999998876643333 444555788887777788888766655433221122222222333335679999999
Q ss_pred cCCCCCCHHHH
Q 026988 141 CQMGSMDGCKA 151 (230)
Q Consensus 141 ~~mp~~dg~~l 151 (230)
--- ...|+.+
T Consensus 120 PPy-T~~G~~L 129 (243)
T PF01861_consen 120 PPY-TPEGLKL 129 (243)
T ss_dssp --S-SHHHHHH
T ss_pred CCC-CHHHHHH
Confidence 421 2356654
No 170
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=73.54 E-value=51 Score=27.27 Aligned_cols=107 Identities=20% Similarity=0.313 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCH-------HHH
Q 026988 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG-------CKA 151 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg-------~~l 151 (230)
.+.+.+++.|..+..+-+...-++.+...+ ...|.|++=.--|+..| ++-
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l-----------------------~~~D~vlvMtV~PGfgGq~fi~~~lek 153 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIM-----------------------DKVDLILLMSVNPGFGGQSFIPHTLDK 153 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-----------------------HhCCeEEEEEecCCCCCceecHhHHHH
Confidence 444556667776666655544444444332 24666665334465544 445
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHHHHHHHHHHHH
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~L~~~l~~~l 211 (230)
++++++.... .+.++||.+. +.-+.+.+..+.++|++.+ +.+.-++.+....++..+
T Consensus 154 I~~l~~~~~~--~~~~~~I~vd-GGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 154 LRAVRKMIDE--SGRDIRLEID-GGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred HHHHHHHHHh--cCCCeeEEEE-CCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 5566554321 2335666664 4456889999999999966 444445555555555443
No 171
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=73.47 E-value=19 Score=30.69 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCC------ChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALV------TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~------~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.+++++.+|+ ...++|++++|-.+ .+.....+.++|+++.|.-.+..++....+..+-+
T Consensus 76 ~~~~~~~~r~------~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 76 VFELVREIRE------KDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHh------cCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4555666653 34568999998654 33568889999999999977888777666655443
No 172
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.91 E-value=22 Score=30.89 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=46.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
...+.+.+++.+.+. ..+|+|.+| +|+-.+--+.+..++. ..+ -..
T Consensus 203 eVEv~tl~ea~eal~--------------------------~gaDiI~LD-nm~~e~vk~av~~~~~------~~~-~v~ 248 (289)
T PRK07896 203 EVEVDSLEQLDEVLA--------------------------EGAELVLLD-NFPVWQTQEAVQRRDA------RAP-TVL 248 (289)
T ss_pred EEEcCCHHHHHHHHH--------------------------cCCCEEEeC-CCCHHHHHHHHHHHhc------cCC-CEE
Confidence 446788888888874 458999999 4442222333333332 112 246
Q ss_pred EEEecCCChHhHHHHHHcCCCee
Q 026988 171 IAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
+..|+.-+.+.+......|+|.+
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 77888889999999999999844
No 173
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=72.87 E-value=7.3 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=28.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
+|||+||.....-..+.+.|++.|+.+.++..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 69999998888888899999999998887764
No 174
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=72.73 E-value=68 Score=28.35 Aligned_cols=55 Identities=24% Similarity=0.194 Sum_probs=39.6
Q ss_pred CccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 133 HYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 133 ~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.+|+|.+|+..++.+ -.+++++||+ ..+.+|||+= .-.+.+....+.++|++...
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~------~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKK------HLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHh------hCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 469999999998654 4668888885 2344565552 12367788899999999765
No 175
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=72.24 E-value=24 Score=29.94 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.++.++.+|+ ...++|+++++-.+. ......+.++|+++++.-....++....+..+-
T Consensus 74 ~~~~v~~ir~------~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 74 CFELLKKVRQ------KHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHh------cCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 4556666663 224678888877665 567888999999999888777777665554443
No 176
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=72.17 E-value=36 Score=29.35 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=56.1
Q ss_pred EEEEeccHHHHHHHHHHHH----hcCCe--E-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 67 VLLVEDQAVLQRIGIRMLK----KLGAG--V-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~----~~g~~--v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
|||=|++-...--+.+.++ ..+|. + ..+.+.+++.+++. ..+|+|++
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~--------------------------agaDiImL 214 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE--------------------------AGADIIML 214 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH--------------------------cCCCEEEe
Confidence 5555555444333444443 33552 2 35778888888875 46999999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
|-.-| ..--++++.+. ...-.++=.|+.-+.+.+......|+|-+
T Consensus 215 DNm~~-e~~~~av~~l~--------~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 215 DNMSP-EELKEAVKLLG--------LAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred cCCCH-HHHHHHHHHhc--------cCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 95433 12222233221 22345777888889999999999999843
No 177
>PRK05637 anthranilate synthase component II; Provisional
Probab=72.15 E-value=11 Score=30.93 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=29.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.+||++|....+...+.+.|...|+.+.++.+..
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~ 35 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTV 35 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4799999999999999999999999988887653
No 178
>PLN02591 tryptophan synthase
Probab=72.00 E-value=20 Score=30.37 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.+++++.+|+ ..++|+|++|-.+. +.....+.++|+++.|.-.+..++.......+-+
T Consensus 66 ~~~~~~~~r~-------~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 66 VISMLKEVAP-------QLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHhc-------CCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4566666652 24589998887553 3457888999999999998888877766555544
No 179
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=71.92 E-value=67 Score=27.98 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=45.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++--. .+.-|..+++-+. ..+|||..-.... ..+....|.++++..|-+.+++.++|..++..
T Consensus 258 ~d~~v~~s~-~Egf~~~~lEAma---------~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 258 VSALLLTSK-FEGFPMTLLEAMS---------YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred CcEEEECCc-ccCcChHHHHHHH---------cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 466665322 2233556666554 3478875431222 22345668899999999999999999999887
Q ss_pred ccC
Q 026988 214 KSH 216 (230)
Q Consensus 214 ~~~ 216 (230)
...
T Consensus 325 ~~~ 327 (359)
T PRK09922 325 EVK 327 (359)
T ss_pred ccc
Confidence 754
No 180
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=71.39 E-value=73 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=44.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|+.++ ...+..-|+.+++-+- ..+|||.... . -..+....|.++++..|.++++|.++|..++..
T Consensus 301 adv~v~-~s~~e~~~~~llEAmA---------~G~PVIas~~-~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 301 SDVHVY-LTYPFVLSWSLLEAMA---------CGCLVVGSDT-A---PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred CcEEEE-cCcccccchHHHHHHH---------CCCCEEEcCC-C---CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 455544 2345544555555543 4578876432 2 223445667889999999999999999998875
Q ss_pred cc
Q 026988 214 KS 215 (230)
Q Consensus 214 ~~ 215 (230)
..
T Consensus 367 ~~ 368 (396)
T cd03818 367 PA 368 (396)
T ss_pred HH
Confidence 43
No 181
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=71.10 E-value=75 Score=28.15 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=42.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~~l~ 212 (230)
.|++++-....+.-|.-+++-+. ..+|||....... .+....|.++| +..|.+.++|.++|..++.
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma---------~G~PVI~s~~gg~----~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMA---------AGKPVLASTKGGI----TEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHH---------cCCCEEEeCCCCc----HhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 57777643333333444444443 3578877543222 23345677888 5678999999999998886
Q ss_pred hc
Q 026988 213 RK 214 (230)
Q Consensus 213 ~~ 214 (230)
..
T Consensus 344 d~ 345 (380)
T PRK15484 344 DP 345 (380)
T ss_pred CH
Confidence 54
No 182
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=70.79 E-value=26 Score=29.48 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHH
Q 026988 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR 153 (230)
Q Consensus 74 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~ 153 (230)
...-..|.+..++.|..+.+..-..++++.+.. +++-.+-+--.+.+-+.+++
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~---------------------------~~~~~~KIaS~dl~n~~lL~ 107 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEESVDFLEE---------------------------LGVPAYKIASGDLTNLPLLE 107 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH---------------------------HT-SEEEE-GGGTT-HHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH---------------------------cCCCEEEeccccccCHHHHH
Confidence 344467888999999999988888899998863 34445555556677888888
Q ss_pred HHHHhhhhhhcCCCceEEEEecCCChHhHHHHH
Q 026988 154 VIRRLEAEAETGQSIPIIAFTALVTADNERECF 186 (230)
Q Consensus 154 ~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~ 186 (230)
.+.+ ...|||+-|+....+.+..+.
T Consensus 108 ~~A~--------tgkPvIlSTG~stl~EI~~Av 132 (241)
T PF03102_consen 108 YIAK--------TGKPVILSTGMSTLEEIERAV 132 (241)
T ss_dssp HHHT--------T-S-EEEE-TT--HHHHHHHH
T ss_pred HHHH--------hCCcEEEECCCCCHHHHHHHH
Confidence 8864 458999999998887766554
No 183
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=70.78 E-value=55 Score=27.34 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=38.0
Q ss_pred CccEEEEecCCCCCCHHHH----HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 133 HYDLILMDCQMGSMDGCKA----TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l----~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..|.|++=.--|+..|..+ +.+|++++.......--..|-+-+.-+.+....+.++|+|-++.
T Consensus 140 ~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~ 206 (228)
T PRK08091 140 QIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVS 206 (228)
T ss_pred hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 4677666555677666332 33444433222221112457777778889999999999995543
No 184
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=70.67 E-value=43 Score=28.25 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA 205 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~ 205 (230)
..-||.+++|.+-...|.-.++..|+...+ .+..|||=... .....+.+.+..|+..+|.-=++..+=.+
T Consensus 36 ~aGfDwl~iD~EHapnd~~sl~~qL~a~~~----~~~~pvVR~p~-g~~~~Ikq~LD~GAqtlliPmV~s~eqAr 105 (255)
T COG3836 36 TAGFDWLLIDGEHAPNDLQSLLHQLQAVAA----YASPPVVRPPV-GDPVMIKQLLDIGAQTLLIPMVDTAEQAR 105 (255)
T ss_pred hcCCCEEEecccccCccHHHHHHHHHHhhc----cCCCCeeeCCC-CCHHHHHHHHccccceeeeeccCCHHHHH
Confidence 667999999999999999999999986533 35567776554 67888999999999999886665544333
No 185
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=70.39 E-value=35 Score=27.57 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCeEEEEc--CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC---CC--HHHH
Q 026988 79 IGIRMLKKLGAGVTLVK--DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS---MD--GCKA 151 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~--~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~---~d--g~~l 151 (230)
...+.|.+.|+.+..-+ .+...+..+. .-+||.|-+|..+-. .+ ...+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~-------------------------~l~~d~iKld~~~~~~~~~~~~~~~~ 191 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLK-------------------------RLPVDLLKIDKSFVRDLQTDPEDEAI 191 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHH-------------------------hCCCCeEEECHHHHhhhccChhHHHH
Confidence 44566677777765543 3334444444 557999999976532 11 3345
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCH
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQE 200 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~ 200 (230)
++.+.... ....+ -++.++-.+.+....+.+.|++ .|+.||.+.
T Consensus 192 l~~l~~~~----~~~~~-~via~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 192 VQSIIELA----QKLGL-QVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHH----HHCCC-eEEEecCCCHHHHHHHHHcCCCEEeeceeccCCCC
Confidence 55554421 11223 4556777888899999999997 347777654
No 186
>PRK14098 glycogen synthase; Provisional
Probab=70.38 E-value=70 Score=29.71 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=39.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|+.++=- ..+.-|...+.-++ ..+|+|+.......+........+.++|+..|.++++|..+|.+++.
T Consensus 381 ~aDi~l~PS-~~E~~Gl~~lEAma---------~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 381 GLDMLLMPG-KIESCGMLQMFAMS---------YGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred hCCEEEeCC-CCCCchHHHHHHHh---------CCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 367777532 22334555555444 23445544322222222222223678999999999999999988664
No 187
>CHL00101 trpG anthranilate synthase component 2
Probab=70.34 E-value=8.4 Score=30.94 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=28.4
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
||+||........+.+.|...|+.+.++.+..
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~ 33 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDE 33 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCC
Confidence 89999999999999999999999998887654
No 188
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=70.32 E-value=67 Score=27.33 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHH----HH
Q 026988 78 RIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK----AT 152 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~----l~ 152 (230)
..+...-+.+|..+. .++|.+++-.++. .+.-|+-++.-+...++ ..
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~----------------------------~ga~iIGINnRdL~tf~vdl~~t 197 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALK----------------------------LGAKIIGINNRDLTTLEVDLETT 197 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHh----------------------------CCCCEEEEeCCCcchheecHHHH
Confidence 455566677888755 6888888877775 22334444444444332 33
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..|.... ....-+|.-|+-.+.++.......|+++||.=
T Consensus 198 ~~la~~~-----p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 198 EKLAPLI-----PKDVILISESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHhhC-----CCCcEEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 3443221 12355666788888999999999999999874
No 189
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=70.08 E-value=64 Score=31.05 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCc--ccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN--LETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dlvl~D~~ 142 (230)
.+|+|++-...-+ .+.+.|.+.|+.+...+.-.+..+.++. ........|.... +....-.+.+++++-..
T Consensus 401 ~~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~------~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQ-IVGRLLLSSGVKMTVLDHDPDHIETLRK------FGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHh------cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 4788888888774 5567777778888888766666665542 1122233333322 33334557888888764
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
-++. -..++..+|+. .++++|++-+ .+........+.|++...
T Consensus 474 d~~~-n~~i~~~ar~~------~p~~~iiaRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 474 DPQT-SLQLVELVKEH------FPHLQIIARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred CHHH-HHHHHHHHHHh------CCCCeEEEEE--CCHHHHHHHHHCCCCEEe
Confidence 3332 34556667753 4557777655 346677788899999653
No 190
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=70.03 E-value=70 Score=27.42 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCceEEEEecCC----C-hHhHHHHHHcCCCeeEeCCC--CHHHHHHHHHHHHHhc
Q 026988 166 QSIPIIAFTALV----T-ADNERECFNSGMDTFLNKPA--QEHLLAAAIVETIARK 214 (230)
Q Consensus 166 ~~~pii~ls~~~----~-~~~~~~~~~~G~~~~L~KP~--~~~~L~~~l~~~l~~~ 214 (230)
..+|+|++.... . ........+. -.+++..+- +.++|.++|..++...
T Consensus 271 ~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 271 LGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred hCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 357888764211 1 1122233333 456777764 8999999999887643
No 191
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=69.98 E-value=60 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.594 Sum_probs=9.3
Q ss_pred ChHhHHHHHHcCCCeeEeCC
Q 026988 178 TADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 178 ~~~~~~~~~~~G~~~~L~KP 197 (230)
+.+....+.++|++ |+.-|
T Consensus 69 ~~~~a~~a~~aGA~-FivsP 87 (204)
T TIGR01182 69 NPEQLRQAVDAGAQ-FIVSP 87 (204)
T ss_pred CHHHHHHHHHcCCC-EEECC
Confidence 34445555555555 44444
No 192
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.91 E-value=29 Score=29.09 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+++.++.+|+ ...+|+++++-.+. +.....+.++|+++++.-....+++...++.+.+
T Consensus 64 ~~~~~~~vr~-------~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 64 VLELVKEIRK-------KNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHhh-------cCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4555555553 13578888877553 5668888999999998865666665555544443
No 193
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.62 E-value=65 Score=26.89 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCC------HH
Q 026988 76 LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD------GC 149 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~d------g~ 149 (230)
....+.+.+++.|..+..+-+...-.+.+.... .....++++ -.+|+-. -.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~----------------------~~~~~~l~m-sv~~~~g~~~~~~~~ 173 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS----------------------KLSPLFIYY-GLRPATGVPLPVSVE 173 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH----------------------HhCCCEEEE-EeCCCCCCCchHHHH
Confidence 345566777788876655544422222222111 234556666 4445421 23
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
+.++++|+. ....||++=.+-.+.++...+.++|+|.++.-
T Consensus 174 ~~i~~lr~~------~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 174 RNIKRVRNL------VGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred HHHHHHHHh------cCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 455555542 12356554444447888888899999999876
No 194
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=69.53 E-value=60 Score=26.45 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..++.++.+++. ..+||+...+-.+.++...+++.|++.++.-
T Consensus 164 ~~~~~l~~i~~~-------~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 164 PDFELLKELRKA-------LGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCHHHHHHHHHh-------cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 346778888741 2589999998888999999999999988754
No 195
>PRK05670 anthranilate synthase component II; Provisional
Probab=69.47 E-value=9.7 Score=30.46 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.8
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
|||+|.....-..+.++|.+.|+.+.+....
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~ 32 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRND 32 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECC
Confidence 8999999999999999999999998887664
No 196
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.44 E-value=46 Score=26.87 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=58.6
Q ss_pred CcEEEEEecc---HHHHHHHHHHHHhcCCeEEEEcCcHH----HHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 64 GLSVLLVEDQ---AVLQRIGIRMLKKLGAGVTLVKDGEA----AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 64 ~~~iLiVdd~---~~~~~~l~~~L~~~g~~v~~~~~~~~----al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
+.+|.+|--| .-..+.|+.+-+..|..+..+.+..+ +.+.+... ....+|+
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~D~ 86 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF----------------------RKKGYDL 86 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH----------------------HHTTSSE
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH----------------------hhcCCCE
Confidence 4566655433 24557788888888988887764432 22233321 1456999
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH---HHHHH-cCCCee-EeC
Q 026988 137 ILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE---RECFN-SGMDTF-LNK 196 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~---~~~~~-~G~~~~-L~K 196 (230)
||+|..=-...-.+.+..++++... ..+.-.++++++....+.. ...++ .+.+++ ++|
T Consensus 87 vlIDT~Gr~~~d~~~~~el~~~~~~--~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 87 VLIDTAGRSPRDEELLEELKKLLEA--LNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp EEEEE-SSSSTHHHHHHHHHHHHHH--HSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred EEEecCCcchhhHHHHHHHHHHhhh--cCCccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 9999831112234455556554333 2344456666666555443 23333 456755 566
No 197
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=68.97 E-value=50 Score=26.37 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=40.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..+|.|-++- .+.. |.+.++.++. ..+++|++.+-+- +.++....++.|++.+-.-
T Consensus 116 ~Gad~i~~~p-~~~~-g~~~~~~l~~------~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 116 LGADIVKLFP-AEAV-GPAYIKALKG------PFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCCCEEEEcC-Cccc-CHHHHHHHHh------hCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 4578887753 3333 8888888875 2345788877765 8889999999998876443
No 198
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=68.52 E-value=29 Score=27.98 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCeEEEEc--CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-C----CHHHH
Q 026988 79 IGIRMLKKLGAGVTLVK--DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-M----DGCKA 151 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~--~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-~----dg~~l 151 (230)
...+.|.+.|+.+..-+ .+...++.+. ...||.|=+|..+.. + ....+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~-------------------------~~~~d~iKld~~~~~~~~~~~~~~~~ 190 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLK-------------------------RLPVDYLKIDRSFVRDIETDPEDRAI 190 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHH-------------------------hCCCCEEEECHHHHHhHhcChhhHHH
Confidence 34555666777766543 3344444444 557999999976532 1 23445
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCH
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQE 200 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~ 200 (230)
++.+...- ....+ -++.++-.+.+....+...|++ .|+.||...
T Consensus 191 l~~l~~~~----~~~~~-~via~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 191 VRAIIALA----HSLGL-KVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHH----HHCCC-eEEEEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 55554321 11223 4566777888889999999996 346677654
No 199
>PRK14057 epimerase; Provisional
Probab=68.50 E-value=74 Score=27.08 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=50.2
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKAT----RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQEHLL 203 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~----~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~L 203 (230)
..|.|++=.--|+..|..++ .+|++++.-......-..|-+-+.-+.+.+..+.++|+|-+ +.+.-+..+.
T Consensus 154 ~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~ 233 (254)
T PRK14057 154 DVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVEN 233 (254)
T ss_pred hCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHH
Confidence 47777665556777764433 35554333222222124577777788899999999999944 5554456666
Q ss_pred HHHHHHHHHhc
Q 026988 204 AAAIVETIARK 214 (230)
Q Consensus 204 ~~~l~~~l~~~ 214 (230)
...++..+.+.
T Consensus 234 i~~l~~~~~~~ 244 (254)
T PRK14057 234 TRSWRAMFKVA 244 (254)
T ss_pred HHHHHHHHhhc
Confidence 66666555543
No 200
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.30 E-value=81 Score=27.46 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCccEEEEecCCC-----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMG-----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp-----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|.|++.-.-. ...-+.++..+++ ..++|||+--+-.+......++..|+++...
T Consensus 128 ~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~-------~~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 128 AGADAVIAEGMESGGHIGELTTMALVPQVVD-------AVSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred cCCCEEEEECcccCCCCCCCcHHHHHHHHHH-------HhCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 3588888744211 2234778887774 1258999998888999999999999997754
No 201
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.06 E-value=26 Score=30.33 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=43.8
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+++. ..+|+|.+| +|.-.+--++++.++. ..+++| +
T Consensus 201 VEv~tleea~eA~~--------------------------~GaD~I~LD-n~~~e~l~~av~~~~~------~~~~i~-l 246 (288)
T PRK07428 201 VETETLEQVQEALE--------------------------YGADIIMLD-NMPVDLMQQAVQLIRQ------QNPRVK-I 246 (288)
T ss_pred EECCCHHHHHHHHH--------------------------cCCCEEEEC-CCCHHHHHHHHHHHHh------cCCCeE-E
Confidence 35678899988874 458999999 3322222223333332 123454 5
Q ss_pred EEecCCChHhHHHHHHcCCCee
Q 026988 172 AFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
..++.-+.+.+......|+|.+
T Consensus 247 eAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 247 EASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred EEECCCCHHHHHHHHHcCCCEE
Confidence 5566678889999999999955
No 202
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=67.76 E-value=82 Score=27.30 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=30.9
Q ss_pred CceEEEEecC----CCh-HhHHHHHHcCCCeeEeCCCC--HHHHHHHHHHHHHhccCcc
Q 026988 167 SIPIIAFTAL----VTA-DNERECFNSGMDTFLNKPAQ--EHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 167 ~~pii~ls~~----~~~-~~~~~~~~~G~~~~L~KP~~--~~~L~~~l~~~l~~~~~~~ 218 (230)
.+|+|++... ... .......+.|. +++..|-+ ++.|.+++..++.....+.
T Consensus 272 g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 329 (357)
T PRK00726 272 GLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLELLSDPERLE 329 (357)
T ss_pred CCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHHHcCHHHHH
Confidence 4788877531 111 12233344554 67776644 9999999999887654443
No 203
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=67.75 E-value=61 Score=25.82 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=36.7
Q ss_pred ccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 134 YDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
+|.++++...|+.+| .+.++++++..+. ..+++|+++.-+ -+.+....+.+.|++.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~--~~~~~pi~v~GG-I~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPE--NNLNLLIEVDGG-INLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHh--cCCCeEEEEECC-CCHHHHHHHHHcCCCEEEEC
Confidence 688877765555433 3445555543221 123467766555 44688889999999987653
No 204
>PRK00811 spermidine synthase; Provisional
Probab=67.49 E-value=59 Score=27.85 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=15.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHh
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKK 86 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~ 86 (230)
.+|.+||-|+...+..++.+..
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~ 122 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPE 122 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHH
Confidence 3677788777777777777654
No 205
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=67.25 E-value=75 Score=30.89 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCeEEEE--cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-----CCHHH
Q 026988 78 RIGIRMLKKLGAGVTLV--KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-----MDGCK 150 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-----~dg~~ 150 (230)
......|++.|+.+..- .++...+..+. .-+||.|=+|-.+-. .....
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-------------------------~l~~d~iKid~~~~~~~~~~~~~~~ 735 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-------------------------SLPVTEIKIDKSFVDRCLTEKRILA 735 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-------------------------hCCCCEEEECHHHHhhcccChhHHH
Confidence 34455677778777653 45555555554 567999999986521 12344
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCHHHHHHHHHHH
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~~~L~~~l~~~ 210 (230)
+++.+...- ...++. ++..+-.+.+....+.+.|++ .|+.||...++|...|+..
T Consensus 736 ~~~~~~~~~----~~~~i~-via~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 736 LLEAITSIG----QSLNLT-VVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHHH----HHCCCe-EEEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 555554321 112343 455677788888899999998 4688999999999877654
No 206
>PRK10060 RNase II stability modulator; Provisional
Probab=67.19 E-value=78 Score=30.57 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCeEEE--EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC-----CCCHH
Q 026988 77 QRIGIRMLKKLGAGVTL--VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG-----SMDGC 149 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp-----~~dg~ 149 (230)
.....+.|++.|+.+.. +.+|...+..|. .-++|.|=+|-.+- +....
T Consensus 543 ~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~-------------------------~l~~d~iKiD~sfv~~i~~~~~~~ 597 (663)
T PRK10060 543 ALSVIQQFSQLGAQVHLDDFGTGYSSLSQLA-------------------------RFPIDAIKLDQSFVRDIHKQPVSQ 597 (663)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHH-------------------------hCCCCEEEECHHHHhccccCcchH
Confidence 34556667778887665 345566666665 66899999996442 22344
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCHHHHHHHHHHHH
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~~~L~~~l~~~l 211 (230)
.+++.|-..- ....+.+ +..+-.+.+....+.+.|++ .|+.||...+++...+....
T Consensus 598 ~~v~~ii~~a----~~lg~~v-iAeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 598 SLVRAIVAVA----QALNLQV-IAEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred HHHHHHHHHH----HHCCCcE-EEecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 5555554321 1123433 45566778888888899998 45889999999888775443
No 207
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=67.15 E-value=58 Score=25.37 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCccEEEEecCCCC--------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMGS--------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp~--------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|.|+++...|. ..+++.++++++. .++||++..+- +.+......+.|++.+..
T Consensus 114 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 114 LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-------VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 35899988755442 2456777777642 45888888775 568888999999997743
No 208
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=67.11 E-value=1e+02 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=21.3
Q ss_pred CCcEEEEEeccH---HHHHHHHHHHHhcCCeEEEEcC
Q 026988 63 EGLSVLLVEDQA---VLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 63 ~~~~iLiVdd~~---~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
.+.+|++|+-|. .....+..+....|..+..+.+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~ 163 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK 163 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCC
Confidence 467899998773 3344555556666766665543
No 209
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.79 E-value=82 Score=26.97 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=52.0
Q ss_pred CcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.++.+++-|.. ....+....+..|+.+..+.+..+..+.+.... ....+|+||+|
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~---------------------~~~~~D~ViID 161 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK---------------------EEARVDYILID 161 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH---------------------hcCCCCEEEEE
Confidence 345665554432 333445555556666665555544433333210 13469999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh----HHHHHHcCCCee-EeC
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN----ERECFNSGMDTF-LNK 196 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~----~~~~~~~G~~~~-L~K 196 (230)
.-=-.-..-+.++.+++.... ..+.-.++++++.....+ .......+.+++ ++|
T Consensus 162 t~Gr~~~~~~~l~el~~~~~~--~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TK 220 (270)
T PRK06731 162 TAGKNYRASETVEEMIETMGQ--VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 220 (270)
T ss_pred CCCCCcCCHHHHHHHHHHHhh--hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEe
Confidence 742211122334444432211 123334566665544322 233334666666 455
No 210
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=66.67 E-value=76 Score=26.52 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHH----HHH
Q 026988 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA----TRV 154 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l----~~~ 154 (230)
.+.+.+++.|..+-.+-+...-++.+...+ ...|.|++=.--|+..|..+ +.+
T Consensus 99 ~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l-----------------------~~vD~VLvMsV~PGf~GQ~fi~~~l~K 155 (229)
T PRK09722 99 RLIDEIRRAGMKVGLVLNPETPVESIKYYI-----------------------HLLDKITVMTVDPGFAGQPFIPEMLDK 155 (229)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHH-----------------------HhcCEEEEEEEcCCCcchhccHHHHHH
Confidence 344556666666655554444444444332 24676655444588777443 335
Q ss_pred HHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE------eC-CCCHHHHHHHHHHHHH
Q 026988 155 IRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL------NK-PAQEHLLAAAIVETIA 212 (230)
Q Consensus 155 lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L------~K-P~~~~~L~~~l~~~l~ 212 (230)
|++++........-..|-+=+.-+.+.+..+.++|+|-++ .+ .-+..+....++..+.
T Consensus 156 I~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 156 IAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHH
Confidence 5544332112111245677777788899999999999543 33 3345555555555443
No 211
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.66 E-value=25 Score=30.63 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=44.2
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+.+. ..+|+|++|-+-| .+--+.+..++ .-.++
T Consensus 210 VEvetleea~eA~~--------------------------aGaDiImLDnmsp-e~l~~av~~~~----------~~~~l 252 (294)
T PRK06978 210 IEVETLAQLETALA--------------------------HGAQSVLLDNFTL-DMMREAVRVTA----------GRAVL 252 (294)
T ss_pred EEcCCHHHHHHHHH--------------------------cCCCEEEECCCCH-HHHHHHHHhhc----------CCeEE
Confidence 45778888888874 4589999994332 22222233222 12467
Q ss_pred EEecCCChHhHHHHHHcCCCee
Q 026988 172 AFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
-.|+.-+.+.+......|+|-.
T Consensus 253 EaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 253 EVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEECCCCHHHHHHHHhcCCCEE
Confidence 8888889999999999999933
No 212
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=66.56 E-value=71 Score=26.13 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=41.8
Q ss_pred Ccc-EEEEecCCCCC-CH--HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 133 HYD-LILMDCQMGSM-DG--CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 133 ~~d-lvl~D~~mp~~-dg--~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++ +++.|+.--++ .| +++++.+++ ...+|+++-.+-.+.++...++..|+++++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~-------~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVK-------AVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHH-------hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 355 77788764432 22 677777774 2458999999999999999999999998875
No 213
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=65.70 E-value=97 Score=27.40 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIVETIA 212 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~~~l~ 212 (230)
.+.++.+.+ ...+|||+=.+-..+++...+++.|+++.|. |--++-...++.+....
T Consensus 238 p~~i~~~~e-------~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 238 PYTIRLIVE-------GATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHHHHHH-------cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 455666664 2569999999999999999999999998854 55667777666655443
No 214
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=65.63 E-value=28 Score=27.64 Aligned_cols=69 Identities=26% Similarity=0.255 Sum_probs=45.6
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+.+. ..+|+|.+|-.-| .+--++++.++.. .+. ..|
T Consensus 85 VEv~~~ee~~ea~~--------------------------~g~d~I~lD~~~~-~~~~~~v~~l~~~------~~~-v~i 130 (169)
T PF01729_consen 85 VEVENLEEAEEALE--------------------------AGADIIMLDNMSP-EDLKEAVEELREL------NPR-VKI 130 (169)
T ss_dssp EEESSHHHHHHHHH--------------------------TT-SEEEEES-CH-HHHHHHHHHHHHH------TTT-SEE
T ss_pred EEcCCHHHHHHHHH--------------------------hCCCEEEecCcCH-HHHHHHHHHHhhc------CCc-EEE
Confidence 35778888888875 3489999996544 2223344444432 222 678
Q ss_pred EEecCCChHhHHHHHHcCCCeeE
Q 026988 172 AFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
..|+.-+.+.+.+..+.|+|.+-
T Consensus 131 e~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 131 EASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEECCCCHHHHHHHHhcCCCEEE
Confidence 88888899999999999988553
No 215
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=65.06 E-value=31 Score=30.01 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=44.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
...+.+.+++.+.+. ..+|+|++|-.-| -++-+.++.. ..-.+
T Consensus 212 eVEv~sleea~ea~~--------------------------~gaDiI~LDn~s~----e~~~~av~~~-------~~~~~ 254 (296)
T PRK09016 212 EVEVENLDELDQALK--------------------------AGADIIMLDNFTT----EQMREAVKRT-------NGRAL 254 (296)
T ss_pred EEEeCCHHHHHHHHH--------------------------cCCCEEEeCCCCh----HHHHHHHHhh-------cCCeE
Confidence 446788999988885 3589999995443 2222323221 11246
Q ss_pred EEEecCCChHhHHHHHHcCCCee
Q 026988 171 IAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
+..|+.-+.+.+....+.|+|-+
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 77788889999999999999844
No 216
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=64.92 E-value=54 Score=32.22 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=32.0
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
.+..+.+|+|||....+...+.++|.+.|+.+.++...
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~ 549 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHS 549 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECC
Confidence 44567899999988888889999999999998877654
No 217
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=64.72 E-value=98 Score=27.14 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=33.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCC--ChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV--TADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~--~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.|+++++ + .|..+++.+- ..+|+|+..... ..+......+.|+ ...+.+.++|...|..++
T Consensus 274 aD~~v~~---~--gg~t~~EA~a---------~g~PvI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll 336 (380)
T PRK13609 274 TSCMITK---P--GGITLSEAAA---------LGVPVILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALL 336 (380)
T ss_pred ccEEEeC---C--CchHHHHHHH---------hCCCEEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHH
Confidence 5677653 2 2544445443 347877654322 1222222334454 233467889999888887
Q ss_pred Hh
Q 026988 212 AR 213 (230)
Q Consensus 212 ~~ 213 (230)
..
T Consensus 337 ~~ 338 (380)
T PRK13609 337 QD 338 (380)
T ss_pred CC
Confidence 64
No 218
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=64.44 E-value=89 Score=26.54 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=42.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|+.++-... +.-|..+++-+- ..+|||+.......+. ...+ ..|+..+-+++++.++|.+++.
T Consensus 266 ~adi~v~ps~~-E~~~~~~lEAma---------~G~PvI~s~~~~~~~~----i~~~-~~~~~~~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 266 AMDVFLFPSLY-EGLPLVLIEAQA---------SGLPCILSDTITKEVD----LTDL-VKFLSLDESPEIWAEEILKLKS 330 (358)
T ss_pred hcCEEEecccc-cCCCHHHHHHHH---------hCCCEEEEcCCchhhh----hccC-ccEEeCCCCHHHHHHHHHHHHh
Confidence 35677654332 333555655543 3578887544333322 2223 3577777788999999999998
Q ss_pred hccCcc
Q 026988 213 RKSHKF 218 (230)
Q Consensus 213 ~~~~~~ 218 (230)
....+.
T Consensus 331 ~~~~~~ 336 (358)
T cd03812 331 EDRRER 336 (358)
T ss_pred Ccchhh
Confidence 665554
No 219
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=64.39 E-value=18 Score=29.76 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=28.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
++||++|........+...|.+.|+.+..+....
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~ 34 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDD 34 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCC
Confidence 5899999988888888999999999888776543
No 220
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=63.59 E-value=54 Score=25.87 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=37.8
Q ss_pred CCccEEEEecCCCCC-------CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 132 PHYDLILMDCQMGSM-------DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~-------dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
..+|.|++.--.|.. -|++.++++.+. .++||+.+-+- +.++.....+.|++++-
T Consensus 114 ~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~-------~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 114 LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA-------SPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH-------TSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred cCCCEEEECCccCCCCCccccccCHHHHHHHHHh-------CCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 457888888765533 288888877742 34899999885 56778889999999764
No 221
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=63.39 E-value=78 Score=25.52 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=41.4
Q ss_pred CccEEEEecCCCCCCHH----HHHHHHHHhhhhhhcCCCc-eEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHHH
Q 026988 133 HYDLILMDCQMGSMDGC----KATRVIRRLEAEAETGQSI-PIIAFTALVTADNERECFNSGMDTF-----LNKPAQEHL 202 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~----~l~~~lr~~~~~~~~~~~~-pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~ 202 (230)
.+|.++++..-|+.+|. ..+..+++.++.... ..+ +.|++.+--+.+...++.+.|++.+ +.+.-++.+
T Consensus 131 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~-~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 131 LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE-RGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHh-cCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 36777776654554432 233344332222111 122 4566666667788888888999966 445445554
Q ss_pred HHHHHHH
Q 026988 203 LAAAIVE 209 (230)
Q Consensus 203 L~~~l~~ 209 (230)
-.+.+++
T Consensus 210 ~~~~~~~ 216 (220)
T PRK05581 210 AIDSLRA 216 (220)
T ss_pred HHHHHHH
Confidence 4444443
No 222
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=63.33 E-value=1e+02 Score=26.72 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=43.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++= ...+.-|+.+++-+. ..+|||....... .......|.++++..|-+.++|..+|..++..
T Consensus 279 ad~~v~~-S~~Eg~~~~~lEAma---------~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLT-SQSEGFGLSLMEALS---------HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEec-ccccccChHHHHHHh---------CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 4555543 223344555555543 4578887542211 12345668899999999999999999998875
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 346 ~ 346 (372)
T cd04949 346 P 346 (372)
T ss_pred H
Confidence 4
No 223
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=63.07 E-value=39 Score=29.60 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=42.8
Q ss_pred EEEEEeccHHHHHHHHHHHHhc--CC---eE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKL--GA---GV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~--g~---~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.|+++|-|....+.=.+++... || +| ....||...++.+. ..++|+|++
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-------------------------~~~~dVii~ 201 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-------------------------ENPFDVIIT 201 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-------------------------cCCceEEEE
Confidence 4677777776666666666543 44 23 23446666666554 678999999
Q ss_pred ecCCCCCCHHHHHH
Q 026988 140 DCQMGSMDGCKATR 153 (230)
Q Consensus 140 D~~mp~~dg~~l~~ 153 (230)
|..=|.+.+..+.+
T Consensus 202 dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 202 DSSDPVGPACALFQ 215 (337)
T ss_pred ecCCccchHHHHHH
Confidence 99999998876543
No 224
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=63.02 E-value=87 Score=25.92 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=42.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-... +.-|..+++-+. ..+|||+..... .......+-.+++..+.+.+++.+.|..++..
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~---------~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMA---------AGLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred cCEEEecchh-ccccchHHHHHH---------cCCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 5666654433 333444555443 347877654322 22334447788999999999999999988765
Q ss_pred cc
Q 026988 214 KS 215 (230)
Q Consensus 214 ~~ 215 (230)
..
T Consensus 342 ~~ 343 (374)
T cd03801 342 PE 343 (374)
T ss_pred hH
Confidence 43
No 225
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.62 E-value=31 Score=29.82 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=44.3
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+.+. ..+|+|++|-.-| -++-+.+..+ .... ++
T Consensus 199 VEv~tleea~ea~~--------------------------~gaDiI~LDn~s~----e~l~~av~~~------~~~~-~l 241 (281)
T PRK06106 199 VEVDTLDQLEEALE--------------------------LGVDAVLLDNMTP----DTLREAVAIV------AGRA-IT 241 (281)
T ss_pred EEeCCHHHHHHHHH--------------------------cCCCEEEeCCCCH----HHHHHHHHHh------CCCc-eE
Confidence 46789999988874 4589999994432 2333333221 1123 37
Q ss_pred EEecCCChHhHHHHHHcCCCee
Q 026988 172 AFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
..|+.-+.+.+......|+|-+
T Consensus 242 eaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 242 EASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred EEECCCCHHHHHHHHhcCCCEE
Confidence 8888889999999999999843
No 226
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=62.44 E-value=46 Score=28.78 Aligned_cols=69 Identities=12% Similarity=0.259 Sum_probs=47.2
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
...+.+.+++.+++. ..+|+|++| +|+..+--++.+.+++. .+ -.+
T Consensus 193 eVEv~tleqa~ea~~--------------------------agaDiI~LD-n~~~e~l~~av~~~~~~------~~-~~~ 238 (284)
T PRK06096 193 VVEADTPKEAIAALR--------------------------AQPDVLQLD-KFSPQQATEIAQIAPSL------AP-HCT 238 (284)
T ss_pred EEECCCHHHHHHHHH--------------------------cCCCEEEEC-CCCHHHHHHHHHHhhcc------CC-CeE
Confidence 345678888888875 458999999 44433333444444321 12 346
Q ss_pred EEEecCCChHhHHHHHHcCCCee
Q 026988 171 IAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
+-.|+.-+.+.+......|+|-+
T Consensus 239 leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 239 LSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 78888899999999999999854
No 227
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.41 E-value=91 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=43.5
Q ss_pred ccEEEEecCCCCC-CH--HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 134 YDLILMDCQMGSM-DG--CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 134 ~dlvl~D~~mp~~-dg--~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
-.++++|+..-++ .| +++++.+.+ ...+||++-.+-.+.++...+++.|++..+.
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~-------~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVK-------ATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHH-------hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3699999987553 34 667777764 2468999999999999999999999998876
No 228
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=62.39 E-value=99 Score=26.38 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcH---H-HHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 63 EGLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGE---A-AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~---~-al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
.+.+|++++-|.. ....+..+.+..|..+.....+. + ..+.+... ....+|
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~----------------------~~~~~D 156 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA----------------------KARNID 156 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH----------------------HHCCCC
Confidence 3568999986642 34566667777776655443331 1 22222211 145699
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhhhhh----hcCCCceEEEEecCCChHhHHHH---H-HcCCCee-EeC
Q 026988 136 LILMDCQMGSMDGCKATRVIRRLEAEA----ETGQSIPIIAFTALVTADNEREC---F-NSGMDTF-LNK 196 (230)
Q Consensus 136 lvl~D~~mp~~dg~~l~~~lr~~~~~~----~~~~~~pii~ls~~~~~~~~~~~---~-~~G~~~~-L~K 196 (230)
+||+|.-=-....-.++..++++.... ...++-.++++++....+....+ . ..+.+++ ++|
T Consensus 157 ~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 157 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEc
Confidence 999997521112233444444332111 11244566777776544333322 2 2566665 455
No 229
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=62.17 E-value=39 Score=26.94 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=48.0
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEc-------CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVK-------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
||+-|-|...++.++..-++.|.++.+.+ +|++.++++... .+.|=+|.+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a-----------------------~~DPV~VMf 59 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA-----------------------PHDPVLVMF 59 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC-----------------------CCCCEEEEE
Confidence 56777788888889999999999998876 678888888732 445666666
Q ss_pred ec-CCCC-CCHHHHHHHHH
Q 026988 140 DC-QMGS-MDGCKATRVIR 156 (230)
Q Consensus 140 D~-~mp~-~dg~~l~~~lr 156 (230)
|- ...+ ..|-+++..+-
T Consensus 60 DD~G~~g~G~GE~Al~~v~ 78 (180)
T PF14097_consen 60 DDKGFIGEGPGEQALEYVA 78 (180)
T ss_pred eCCCCCCCCccHHHHHHHH
Confidence 64 3443 45666777665
No 230
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.96 E-value=86 Score=28.61 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=40.2
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....|+|.+|..-+. ..-.+++++||+. .++++|| +..-.+.+....+.++|+|...
T Consensus 163 ~aGvDvI~iD~a~g~~~~~~~~v~~ik~~------~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 163 KAHVDILVIDSAHGHSTRIIELVKKIKTK------YPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred hcCCCEEEEECCCCCChhHHHHHHHHHhh------CCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 446999999998874 4556778888752 3445543 3344567788889999999764
No 231
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=61.95 E-value=39 Score=28.84 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
.+++++.+|+ ...+|++++|-.+. +.....+.++|+++++.-....++....+..+
T Consensus 79 ~~~~~~~~r~-------~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNG-------EIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhc-------CCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 4566666652 25689888887643 45688899999999999877777755544443
No 232
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.94 E-value=1.5e+02 Score=29.55 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=59.9
Q ss_pred cEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+|.++.-|.. ..+.+..+-+..|..+.++.+..+..+.+.. ...+|+||+|.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~------------------------~~~~D~VLIDT 271 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA------------------------LGDKHLVLIDT 271 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH------------------------hcCCCEEEEeC
Confidence 47877776653 3356666667778777777787776666652 34679999997
Q ss_pred C-CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHH---HHHHc----CCCee-EeC
Q 026988 142 Q-MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER---ECFNS----GMDTF-LNK 196 (230)
Q Consensus 142 ~-mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~---~~~~~----G~~~~-L~K 196 (230)
- +...|. ++.+.+..+.. ...+.-.++++++....+... +.|.. +.+++ |+|
T Consensus 272 AGRs~~d~-~l~eel~~l~~--~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 272 VGMSQRDR-NVSEQIAMLCG--VGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CCCCccCH-HHHHHHHHHhc--cCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 3 222222 24444443211 123444566776655544333 44432 56655 455
No 233
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.88 E-value=30 Score=30.02 Aligned_cols=90 Identities=16% Similarity=0.062 Sum_probs=55.2
Q ss_pred EEEEEeccHHHHHHHHHHH----HhcCC--eE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 66 SVLLVEDQAVLQRIGIRML----KKLGA--GV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L----~~~g~--~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
.|||=|++-...-.+.+.+ ....+ .+ ..+.+.+++.+.+. ..+|+|+
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~--------------------------agaDiIm 222 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA--------------------------AGADIIM 222 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH--------------------------cCCCEEE
Confidence 4666666654443333333 23332 23 35688888888875 4589999
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT 192 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~ 192 (230)
+|-.-| .+--+++..++ .-.++-.|+.-+.+.+......|+|-
T Consensus 223 LDnmsp-e~l~~av~~~~----------~~~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 223 LDNMSL-EQIEQAITLIA----------GRSRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred ECCCCH-HHHHHHHHHhc----------CceEEEEECCCCHHHHHHHHhcCCCE
Confidence 994332 22222333222 12477788888999999999999993
No 234
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=61.44 E-value=1.2e+02 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=32.5
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..+|||...... ..+....|.++++..|-+.++|.++|..++.
T Consensus 327 ~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVSTLHSG----IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEeCCCC----chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 357887643222 3345667889999999999999999999887
No 235
>PLN02316 synthase/transferase
Probab=61.33 E-value=1.8e+02 Score=30.07 Aligned_cols=71 Identities=14% Similarity=-0.003 Sum_probs=42.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHH---------HHcCCCeeEeCCCCHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC---------FNSGMDTFLNKPAQEHLL 203 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~---------~~~G~~~~L~KP~~~~~L 203 (230)
..|++++=- +.+--|+..+.-++ ..+|+|+.....-.+.+... ...+.++|+..|.++..|
T Consensus 919 aADiflmPS-~~EP~GLvqLEAMa---------~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aL 988 (1036)
T PLN02316 919 GADFILVPS-IFEPCGLTQLTAMR---------YGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGV 988 (1036)
T ss_pred hCcEEEeCC-cccCccHHHHHHHH---------cCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHH
Confidence 467777652 33444665666555 22444443222333333221 112578999999999999
Q ss_pred HHHHHHHHHh
Q 026988 204 AAAIVETIAR 213 (230)
Q Consensus 204 ~~~l~~~l~~ 213 (230)
..+|.+++..
T Consensus 989 a~AL~raL~~ 998 (1036)
T PLN02316 989 DYALNRAISA 998 (1036)
T ss_pred HHHHHHHHhh
Confidence 9999998874
No 236
>PRK12704 phosphodiesterase; Provisional
Probab=60.70 E-value=12 Score=35.28 Aligned_cols=46 Identities=7% Similarity=0.017 Sum_probs=39.2
Q ss_pred ceEEEEecCCChH--hHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 168 IPIIAFTALVTAD--NERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 168 ~pii~ls~~~~~~--~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+|++|+++... ....+++.++.++..||+..+++...++.-+..
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 4678899988766 788899999999999999999999988876653
No 237
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.63 E-value=92 Score=25.42 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=39.6
Q ss_pred CccEEEEecCCCC-------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 133 HYDLILMDCQMGS-------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 133 ~~dlvl~D~~mp~-------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+|.++++-.-++ ...+++++++++. ..+||++.-+-...++..+++..|++.+..-
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4677777543111 1356677777642 2589999888777788999999999977554
No 238
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.46 E-value=1e+02 Score=26.00 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=44.0
Q ss_pred ccEEEEecC-CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 134 YDLILMDCQ-MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 134 ~dlvl~D~~-mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.|++++-.. ..+.-|..+++-+. ..+|||..-.....+.... .|.++++..|-+.+++..+|..++.
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~---------~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMA---------FGKPVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHH---------cCCCEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHH
Confidence 566665322 12334566666554 3478886432222222222 4778899999999999999999987
Q ss_pred hccCc
Q 026988 213 RKSHK 217 (230)
Q Consensus 213 ~~~~~ 217 (230)
.....
T Consensus 332 ~~~~~ 336 (357)
T cd03795 332 DPELR 336 (357)
T ss_pred CHHHH
Confidence 55433
No 239
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=60.28 E-value=1.1e+02 Score=26.02 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
.+.||++|+=.-.|...|-.-.+.+-+ ...+|.|++|............+.|+-.+|.|.
T Consensus 58 ~~~pDf~i~isPN~a~PGP~~ARE~l~-------~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 58 EWKPDFVIVISPNPAAPGPKKAREILK-------AAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred hhCCCEEEEECCCCCCCCchHHHHHHH-------hcCCCEEEEcCCCccchHHHHHhcCCcEEEEec
Confidence 567999888777777778776766643 346899999988777766555566666556553
No 240
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.27 E-value=33 Score=27.42 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=46.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc--CCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL--GAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~--g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
.++.+|.+++..+.....+.+.|++. |.++.... +.++. +.+.+.|+ ...||+
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~-~~i~~~I~---------------------~s~~di 103 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEER-KAALAKIA---------------------RSGAGI 103 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHH-HHHHHHHH---------------------HcCCCE
Confidence 35679999999999999999998876 33443331 11111 22222232 567999
Q ss_pred EEEecCCCCCCHHHHHHHHH
Q 026988 137 ILMDCQMGSMDGCKATRVIR 156 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr 156 (230)
|++-+.+|...-+ +.+.+
T Consensus 104 l~VglG~PkQE~~--~~~~~ 121 (177)
T TIGR00696 104 VFVGLGCPKQEIW--MRNHR 121 (177)
T ss_pred EEEEcCCcHhHHH--HHHhH
Confidence 9999999987754 34444
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.21 E-value=1.3e+02 Score=27.17 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+.+|.+|.-|+. ....+..+.+..|..+..+.+..+....+.. ...+|+||+
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~------------------------~~~~DlVLI 260 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ------------------------SKDFDLVLV 260 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH------------------------hCCCCEEEE
Confidence 3568888876652 3334666666677777777776665555542 346999999
Q ss_pred ecCC-CCCCHHHHHHHHHHhhhhhhcCCC-ceEEEEecCCChHhHHHHH----HcCCCee-EeC
Q 026988 140 DCQM-GSMDGCKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECF----NSGMDTF-LNK 196 (230)
Q Consensus 140 D~~m-p~~dg~~l~~~lr~~~~~~~~~~~-~pii~ls~~~~~~~~~~~~----~~G~~~~-L~K 196 (230)
|.-= ...|... +..+++.... ..++ -.++++++........+.+ ..|.+.+ ++|
T Consensus 261 DTaGr~~~~~~~-l~el~~~l~~--~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 261 DTIGKSPKDFMK-LAEMKELLNA--CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred cCCCCCccCHHH-HHHHHHHHHh--cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEe
Confidence 9842 1234332 3333332211 1222 3567777766655544333 3456665 555
No 242
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=59.99 E-value=17 Score=29.26 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=27.6
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
||+||.....-..+..+|.+.|+.+.++...
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~ 32 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRND 32 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECC
Confidence 8999999999999999999999988877644
No 243
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=59.80 E-value=88 Score=24.93 Aligned_cols=61 Identities=30% Similarity=0.386 Sum_probs=34.7
Q ss_pred CccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 133 HYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+|.++++..-|+.+| ++.+++++++... ...++||++.-+ -+.+....+.+.|++.++.-
T Consensus 126 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~--~~~~~~i~v~GG-I~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 126 DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE--NGLSILIEVDGG-VNDDNARELAEAGADILVAG 193 (210)
T ss_pred hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh--cCCCceEEEECC-cCHHHHHHHHHcCCCEEEEC
Confidence 3577777654444433 3344445432211 123356655554 45788888899999977543
No 244
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=59.77 E-value=1e+02 Score=25.64 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=45.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~ 198 (230)
...||+|+.=--.|...|-...+.+-+ ....|.|+++.-..........+.|+-..|.|+-
T Consensus 58 ~~~pDfvi~isPNpaaPGP~kARE~l~-------~s~~PaiiigDaPg~~vkdeleeqGlGYIivk~D 118 (277)
T COG1927 58 EFNPDFVIYISPNPAAPGPKKAREILS-------DSDVPAIIIGDAPGLKVKDELEEQGLGYIIVKAD 118 (277)
T ss_pred hcCCCEEEEeCCCCCCCCchHHHHHHh-------hcCCCEEEecCCccchhHHHHHhcCCeEEEecCC
Confidence 567999998887888888877776653 3568999998877666666667788776677753
No 245
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=59.61 E-value=64 Score=26.37 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=42.0
Q ss_pred Ccc-EEEEecCCCC-CCH--HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC-CCeeEe
Q 026988 133 HYD-LILMDCQMGS-MDG--CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG-MDTFLN 195 (230)
Q Consensus 133 ~~d-lvl~D~~mp~-~dg--~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G-~~~~L~ 195 (230)
.++ +++.|...-+ ..| +++++.+++ ..++|+|.-.+-.+.++...+++.| +++++.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~-------~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAA-------AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHH-------hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 355 7888876533 234 678888874 1348999999989999999999988 998865
No 246
>PRK10867 signal recognition particle protein; Provisional
Probab=59.59 E-value=1.5e+02 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=20.1
Q ss_pred CcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEc
Q 026988 64 GLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 64 ~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~ 95 (230)
+.+|++|+-|.. ....+..+.+..|..+....
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC
Confidence 678999887742 23345555666777666543
No 247
>PRK14099 glycogen synthase; Provisional
Probab=59.24 E-value=1.4e+02 Score=27.72 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCeeEeCCCCHHHHHHHHHHH
Q 026988 190 MDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 190 ~~~~L~KP~~~~~L~~~l~~~ 210 (230)
.++++..|.+.++|..+|.++
T Consensus 421 ~~G~l~~~~d~~~La~ai~~a 441 (485)
T PRK14099 421 ATGVQFSPVTADALAAALRKT 441 (485)
T ss_pred CceEEeCCCCHHHHHHHHHHH
Confidence 578999999999999999874
No 248
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.83 E-value=58 Score=27.89 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLLA 204 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L~ 204 (230)
-+++++.+|+ .+..+|+++++-.+. ......+.++|+++.|.--+.+++-.
T Consensus 81 ~lel~~~~r~------~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 81 TLELVEEIRA------KGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHh------cCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 4566666664 457799999987654 24466889999999999766555433
No 249
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.77 E-value=1.4e+02 Score=26.93 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=50.5
Q ss_pred cEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+|.++..|.. ..+.+..+.+..|..+..+.+..+....+.. ...+|+||+|.
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~------------------------l~~~DlVLIDT 223 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE------------------------LRNKHMVLIDT 223 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH------------------------hcCCCEEEEcC
Confidence 46766665553 3456666666677777777776665555542 34579999998
Q ss_pred C-CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh
Q 026988 142 Q-MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181 (230)
Q Consensus 142 ~-mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~ 181 (230)
- +...|.. +.+.+..+... ..+.-.++++++....+.
T Consensus 224 aG~~~~d~~-l~e~La~L~~~--~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 224 IGMSQRDRT-VSDQIAMLHGA--DTPVQRLLLLNATSHGDT 261 (374)
T ss_pred CCCCcccHH-HHHHHHHHhcc--CCCCeEEEEecCccChHH
Confidence 5 3333332 33444332111 112234777777665544
No 250
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=58.48 E-value=1.2e+02 Score=26.03 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=42.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-.. +.-|.-+++-+. ..+|||........ +....|-.+++..|-+.++|.++|..++..
T Consensus 262 ad~~v~ps~--e~~g~~~~Eama---------~G~Pvi~~~~~~~~----e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 262 ARAFLFPAE--EDFGIVPVEAMA---------SGTPVIAYGKGGAL----ETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CCEEEECCc--CCCCchHHHHHH---------cCCCEEEeCCCCCc----ceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 566665433 333444544443 35788876432222 234456778999999999999999998876
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 327 ~ 327 (351)
T cd03804 327 E 327 (351)
T ss_pred c
Confidence 5
No 251
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=58.44 E-value=13 Score=31.84 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=27.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~ 94 (230)
|||||++.+-.+-..+.+.|+..|+++...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe
Confidence 699999999999999999999999888776
No 252
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=58.33 E-value=1.1e+02 Score=25.51 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=64.2
Q ss_pred EEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCC
Q 026988 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147 (230)
Q Consensus 68 LiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~d 147 (230)
+-+|..+.. ..+.+.+++.|...-++=+...-++.+... -...|+|++=.--|+..
T Consensus 90 ~H~E~~~~~-~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~-----------------------l~~vD~VllMsVnPGfg 145 (220)
T COG0036 90 FHAEATEHI-HRTIQLIKELGVKAGLVLNPATPLEALEPV-----------------------LDDVDLVLLMSVNPGFG 145 (220)
T ss_pred EEeccCcCH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHH-----------------------HhhCCEEEEEeECCCCc
Confidence 455533333 455666677777776665555555555433 34588888766668777
Q ss_pred HH----HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 148 GC----KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 148 g~----~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
|- +.+.+||+.+.-... ..-..|-+-+.-+.+.+..+..+|+|-+.
T Consensus 146 GQ~Fi~~~l~Ki~~lr~~~~~-~~~~~IeVDGGI~~~t~~~~~~AGad~~V 195 (220)
T COG0036 146 GQKFIPEVLEKIRELRAMIDE-RLDILIEVDGGINLETIKQLAAAGADVFV 195 (220)
T ss_pred ccccCHHHHHHHHHHHHHhcc-cCCeEEEEeCCcCHHHHHHHHHcCCCEEE
Confidence 73 345566655443222 11456777888889999999999999553
No 253
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=58.05 E-value=1.1e+02 Score=25.63 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCeEE--EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-----CCH
Q 026988 76 LQRIGIRMLKKLGAGVT--LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-----MDG 148 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-----~dg 148 (230)
....+.+.|++.|+++. -+.+|-..+..+. .-+||.|=+|-.+-. ...
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~-------------------------~l~~d~iKID~~fi~~i~~~~~~ 191 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLK-------------------------RLPPDILKIDRSFVRDLETDARD 191 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHh-------------------------hCCCCeEEECHHHHhhcccCcch
Confidence 34556677777887654 3566777777776 678999999986532 223
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~~~L~~~l~ 208 (230)
..+++.|-.+- ....+ -++.-+-.+.+......+.|++ .|+.||...+++...+.
T Consensus 192 ~~iv~~iv~la----~~l~~-~vvaEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 192 QAIVRAIVALA----HKLGL-TVVAEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHHHHHH----HHCCC-EEEEeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 34555554321 11223 3344555677788888999999 45889999877766554
No 254
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=57.85 E-value=80 Score=23.85 Aligned_cols=85 Identities=5% Similarity=0.035 Sum_probs=47.2
Q ss_pred EEEEeccHHHH--HHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 67 VLLVEDQAVLQ--RIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 67 iLiVdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
|++++|+-... ..+.+.+-..-.+..+..+...++..+...... ...+|+|++-+.--
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~--------------------~~~~d~vvi~lGtN 61 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKDS--------------------GKLRKTVVIGLGTN 61 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHHc--------------------CCCCCeEEEEecCC
Confidence 56777776664 234444433323344455667777777644321 34689999877655
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
+..-.+-++.|.+ . ..+..+|++++..
T Consensus 62 d~~~~~nl~~ii~---~--~~~~~~ivlv~~~ 88 (150)
T cd01840 62 GPFTKDQLDELLD---A--LGPDRQVYLVNPH 88 (150)
T ss_pred CCCCHHHHHHHHH---H--cCCCCEEEEEECC
Confidence 5433333344432 1 2234678888775
No 255
>PRK10307 putative glycosyl transferase; Provisional
Probab=57.64 E-value=1.4e+02 Score=26.50 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=30.0
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
..+|||........ ...... + ++++..|-+.++|..+|..++...
T Consensus 330 ~G~PVi~s~~~g~~--~~~~i~-~-~G~~~~~~d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 330 SGRNVVATAEPGTE--LGQLVE-G-IGVCVEPESVEALVAAIAALARQA 374 (412)
T ss_pred cCCCEEEEeCCCch--HHHHHh-C-CcEEeCCCCHHHHHHHHHHHHhCH
Confidence 45788776533221 111222 3 789999999999999999887644
No 256
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=57.21 E-value=1.2e+02 Score=25.73 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCcEEEEE-eccHHHHHHHHHHHHhcCCeEEEEcCc-------HHHHHHHHHHHHhcccccchhccccCCcccccCCCCc
Q 026988 63 EGLSVLLV-EDQAVLQRIGIRMLKKLGAGVTLVKDG-------EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134 (230)
Q Consensus 63 ~~~~iLiV-dd~~~~~~~l~~~L~~~g~~v~~~~~~-------~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (230)
.+..|.++ .+++.. +.+.+++.|+.+....+. ++..+.+. ...|
T Consensus 30 ~g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~-------------------------~~~~ 81 (279)
T TIGR03590 30 QGAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLE-------------------------EEKF 81 (279)
T ss_pred CCCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHH-------------------------hcCC
Confidence 34566544 333332 346778889988776542 23444443 4579
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 135 dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
|+|++|.. ..+. +..+.++. ...+++++...
T Consensus 82 d~vV~D~y--~~~~-~~~~~~k~--------~~~~l~~iDD~ 112 (279)
T TIGR03590 82 DILIVDHY--GLDA-DWEKLIKE--------FGRKILVIDDL 112 (279)
T ss_pred CEEEEcCC--CCCH-HHHHHHHH--------hCCeEEEEecC
Confidence 99999986 2232 23444543 12466666654
No 257
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=57.09 E-value=1.2e+02 Score=25.46 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=44.4
Q ss_pred CCCccEEEEecCCCCC--CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQMGSM--DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~--dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
....|.|.+|...++. -.++.++.+++ ....+|||..-+-.+.++..+.++.|++.+..
T Consensus 159 ~aGad~i~Vd~~~~g~~~a~~~~I~~i~~------~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 159 DDGFDGIHVDAMYPGKPYADMDLLKILSE------EFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HcCCCEEEEeeCCCCCchhhHHHHHHHHH------hcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 4468888889777764 24778888875 22248999988888889999999999997743
No 258
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=56.98 E-value=1.3e+02 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.6
Q ss_pred CCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 190 MDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 190 ~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+..++.+..++++|.+.+..++.....+
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 345 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLADGARR 345 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhcCHHHH
Confidence 3557778899999999999888755443
No 259
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.89 E-value=39 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=34.0
Q ss_pred hcCCCceEEEEecCC------ChHhHHHHHHcCCCeeEeCCCCHHHHHH
Q 026988 163 ETGQSIPIIAFTALV------TADNERECFNSGMDTFLNKPAQEHLLAA 205 (230)
Q Consensus 163 ~~~~~~pii~ls~~~------~~~~~~~~~~~G~~~~L~KP~~~~~L~~ 205 (230)
+.+-.+|||+++-+. ....+..+.++|+++||.-.+.+++-..
T Consensus 91 ~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 91 PQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred ccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 356789999998654 4566788899999999998888877554
No 260
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=56.55 E-value=1.5e+02 Score=26.49 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 132 PHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
..+|+|++|..-.... -.+.+++||+. .++++| +.-.-...+-......+|+|..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~------~P~~~v-IaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREA------WPDKTI-CAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHh------CCCCcE-EEecccCHHHHHHHHHcCCCEE
Confidence 4699999999876544 36677888753 334443 3333445667778889999964
No 261
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=56.41 E-value=1.4e+02 Score=26.22 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=44.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|+.++-.. .+.-|..+++-+. ..+|||+....... .....|.++++..|-+.+++.++|.+++.
T Consensus 302 ~ad~~v~ps~-~E~~g~~~lEAma---------~G~Pvi~~~~~~~~----e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 302 AADVVAVPSY-NESFGLVAMEAQA---------CGTPVVAARVGGLP----VAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred hCCEEEECCC-CCCcChHHHHHHH---------cCCCEEEecCCCcH----hhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 3567665432 3344555655554 35788875433222 33456788899999999999999998886
Q ss_pred hc
Q 026988 213 RK 214 (230)
Q Consensus 213 ~~ 214 (230)
..
T Consensus 368 ~~ 369 (405)
T TIGR03449 368 DP 369 (405)
T ss_pred CH
Confidence 43
No 262
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.12 E-value=1.6e+02 Score=28.07 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=34.0
Q ss_pred CcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|.+++-|.. ....+..+-...|+.+..+.+..+....+.. ...+|+||+|
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~------------------------l~~~DLVLID 435 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER------------------------LRDYKLVLID 435 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH------------------------hccCCEEEec
Confidence 357777775541 1234444445566667777666666666652 2458999999
Q ss_pred cC
Q 026988 141 CQ 142 (230)
Q Consensus 141 ~~ 142 (230)
.-
T Consensus 436 Ta 437 (559)
T PRK12727 436 TA 437 (559)
T ss_pred CC
Confidence 75
No 263
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.06 E-value=30 Score=28.21 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCccEEEEecCCCCCCHHH----HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMGSMDGCK----ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~----l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...|.|++=.--|+..|-. .+++|++++.-......-..|.+=+.-+.+.+..+.++|++-+..
T Consensus 126 ~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 126 DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVA 193 (201)
T ss_dssp CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEE
T ss_pred hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3578776655557766633 344544433332222223466677777888999999999997764
No 264
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=55.51 E-value=1.3e+02 Score=25.65 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
|..+++-+. ..+|||...... ..+....|-.+++..|-+.+++.++|.+++....
T Consensus 284 ~~~~~EA~a---------~G~PvI~s~~~~----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 284 PVVLLEAQA---------SGVPVVATRHGG----IPEAVEDGETGLLVPEGDVAALAAALGRLLADPD 338 (367)
T ss_pred chHHHHHHH---------cCCCEEEeCCCC----chhheecCCeeEEECCCCHHHHHHHHHHHHcCHH
Confidence 555555553 357888643322 2233455677899999999999999998877543
No 265
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=55.17 E-value=1.2e+02 Score=26.75 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHH
Q 026988 73 QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152 (230)
Q Consensus 73 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~ 152 (230)
.......|.+..++.|..+.+..-..++++.+. . +++-++-+--.++.-+.|+
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~-------------------------~--~~v~~~KIaS~~~~n~pLL 126 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLE-------------------------D--LGVPRFKIPSGEITNAPLL 126 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-------------------------h--cCCCEEEECcccccCHHHH
Confidence 444567788888999999888888888888886 2 3333555566677778888
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHH
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~ 186 (230)
+.+.+ ...|||+-|+..+.+.+..+.
T Consensus 127 ~~~A~--------~gkPvilStGmatl~Ei~~Av 152 (329)
T TIGR03569 127 KKIAR--------FGKPVILSTGMATLEEIEAAV 152 (329)
T ss_pred HHHHh--------cCCcEEEECCCCCHHHHHHHH
Confidence 88864 357999999998877655543
No 266
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=54.70 E-value=1.4e+02 Score=25.57 Aligned_cols=71 Identities=8% Similarity=0.104 Sum_probs=40.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCC---ChHhHHHHHHcCCCeeEeCCC--CHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV---TADNERECFNSGMDTFLNKPA--QEHLLAAAI 207 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~---~~~~~~~~~~~G~~~~L~KP~--~~~~L~~~l 207 (230)
..|++++. ++ +..+++.+. ..+|+|++.... ......+....+-.+++..|- +.++|.+++
T Consensus 250 ~ad~~v~~---~g--~~~l~Ea~~---------~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i 315 (348)
T TIGR01133 250 AADLVISR---AG--ASTVAELAA---------AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEAL 315 (348)
T ss_pred hCCEEEEC---CC--hhHHHHHHH---------cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHH
Confidence 46787762 11 334445443 357888763211 111122334445667777664 499999999
Q ss_pred HHHHHhccCc
Q 026988 208 VETIARKSHK 217 (230)
Q Consensus 208 ~~~l~~~~~~ 217 (230)
..++......
T Consensus 316 ~~ll~~~~~~ 325 (348)
T TIGR01133 316 LKLLLDPANL 325 (348)
T ss_pred HHHHcCHHHH
Confidence 9888654433
No 267
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=54.57 E-value=1.1e+02 Score=26.23 Aligned_cols=85 Identities=7% Similarity=0.023 Sum_probs=48.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
++...+++.||-......+..+--........-.|..+....+..... ...-=+++.|.
T Consensus 23 L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~---------------------~g~~valvSDA 81 (276)
T TIGR00096 23 LACVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLE---------------------IGNNIAVSSDA 81 (276)
T ss_pred HHhCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHH---------------------cCCcEEEEecC
Confidence 455678888888777555444322111122222344333333332211 22335889999
Q ss_pred CCCCCC--HHHHHHHHHHhhhhhhcCCCceEEEEec
Q 026988 142 QMGSMD--GCKATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 142 ~mp~~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
.||..+ |+.+++..++ ..++|+.+-+
T Consensus 82 G~P~ISDPG~~LV~~~~~--------~~i~v~~ipG 109 (276)
T TIGR00096 82 GPPLISDPGHLLVACREK--------ANIIVVPLPG 109 (276)
T ss_pred CCCCcCCccHHHHHHHHH--------CCCeEEcCCh
Confidence 999765 8999998885 2367776643
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.57 E-value=44 Score=28.63 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=35.5
Q ss_pred CcEEEEEeccHH---HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAV---LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~---~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|.+|+-|+. ....+..+-+..|+.+..+.+..+....+.. ...+|+||+|
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~------------------------~~~~d~vliD 279 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR------------------------LRDKDLILID 279 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH------------------------ccCCCEEEEe
Confidence 368888887762 2345555556667777777776665555542 2358999999
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 280 t 280 (282)
T TIGR03499 280 T 280 (282)
T ss_pred C
Confidence 5
No 269
>PRK08005 epimerase; Validated
Probab=54.55 E-value=94 Score=25.59 Aligned_cols=90 Identities=9% Similarity=0.041 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHH----HH
Q 026988 79 IGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT----RV 154 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~----~~ 154 (230)
...+.+++.|..+-.+=+...-++.+...+ ...|.|++=.--|+..|..++ ++
T Consensus 97 ~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l-----------------------~~vD~VlvMsV~PGf~GQ~f~~~~~~K 153 (210)
T PRK08005 97 EILADIRAIGAKAGLALNPATPLLPYRYLA-----------------------LQLDALMIMTSEPDGRGQQFIAAMCEK 153 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHH-----------------------HhcCEEEEEEecCCCccceecHHHHHH
Confidence 455666667777666655544444444332 247877765666877774443 46
Q ss_pred HHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 155 IRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 155 lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+++++... ... -|-+-+.-+.+.+..+.++|+|.++.
T Consensus 154 I~~l~~~~---~~~-~I~VDGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 154 VSQSREHF---PAA-ECWADGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred HHHHHHhc---ccC-CEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 65543221 112 37777888889999999999995543
No 270
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.24 E-value=1.3e+02 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=15.5
Q ss_pred CChHhHHHHHHcCCCeeEeCCCCHHHHH
Q 026988 177 VTADNERECFNSGMDTFLNKPAQEHLLA 204 (230)
Q Consensus 177 ~~~~~~~~~~~~G~~~~L~KP~~~~~L~ 204 (230)
.+.+....+.++|++ |+.-|....++.
T Consensus 79 l~~e~a~~a~~aGA~-FiVsP~~~~~v~ 105 (222)
T PRK07114 79 VDAATAALYIQLGAN-FIVTPLFNPDIA 105 (222)
T ss_pred cCHHHHHHHHHcCCC-EEECCCCCHHHH
Confidence 345566667777777 555554444433
No 271
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=53.91 E-value=76 Score=26.50 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC-CCCH
Q 026988 73 QAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG-SMDG 148 (230)
Q Consensus 73 ~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp-~~dg 148 (230)
+..=...+..+|+..||++.-.. ..++.++... ...||+|-+..-|. -|.+
T Consensus 117 HdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~-------------------------e~k~d~v~~SalMTttm~~ 171 (227)
T COG5012 117 HDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAK-------------------------ELKPDLVSMSALMTTTMIG 171 (227)
T ss_pred HHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHH-------------------------HcCCcEEechHHHHHHHHH
Confidence 34445567888899999887553 2345555555 56799999988886 3555
Q ss_pred H-HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 149 C-KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 149 ~-~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
. +++..|++ .+-.-|++++.+-. +-...-+-+.|+|.|-.-+
T Consensus 172 ~~~viE~L~e------eGiRd~v~v~vGGA-pvtq~~a~~iGAD~~~~dA 214 (227)
T COG5012 172 MKDVIELLKE------EGIRDKVIVMVGGA-PVTQDWADKIGADAYAEDA 214 (227)
T ss_pred HHHHHHHHHH------cCCccCeEEeecCc-cccHHHHHHhCCCccCcCH
Confidence 4 36677775 45556777775533 2233345678888776543
No 272
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=53.86 E-value=1.5e+02 Score=25.72 Aligned_cols=104 Identities=13% Similarity=0.277 Sum_probs=62.1
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe---c
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD---C 141 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D---~ 141 (230)
+||-+|-|+.-+....+.-+++|..+. .+-.-.+--+.+..+. ....||++++= -
T Consensus 107 kVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll---------------------~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 107 KVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL---------------------EEYRPDILVITGHDG 165 (287)
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH---------------------HHcCCCEEEEeCchh
Confidence 999999999999888888899988654 2333333333332221 15689987752 1
Q ss_pred C------CCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 142 Q------MGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 142 ~------mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
. ..+++. .+..+..|+..|+ . =-+|++++-+++ ..+..+++||+ |-.-|
T Consensus 166 ~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~----~-D~LVIfAGACQS-~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 166 YLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPN----L-DDLVIFAGACQS-HFEALLEAGAN-FASSP 227 (287)
T ss_pred hhcCCCChhhhhhhhccHHHHHHHHHHHhcCCC----c-ccEEEEcchhHH-HHHHHHHcCcc-ccCCc
Confidence 1 111221 3445555543332 1 246667775654 56788999998 55544
No 273
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=53.85 E-value=1.2e+02 Score=31.77 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=63.9
Q ss_pred cEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 65 LSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 65 ~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
-+||+. |-+..=...+.-+|+..||+|.-.. ..++.++... ...+|+|
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~-------------------------e~~~diV 806 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAK-------------------------EENADII 806 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-------------------------HhCCCEE
Confidence 377777 7777778888899999999998764 3345555554 5689999
Q ss_pred EEecCCC-CCCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHh----HHHHHHcCCCeeE
Q 026988 138 LMDCQMG-SMDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADN----ERECFNSGMDTFL 194 (230)
Q Consensus 138 l~D~~mp-~~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~----~~~~~~~G~~~~L 194 (230)
.+...|. .+.. .++++.|++ .+..+||++=-+..+... +..-+ .|++.|-
T Consensus 807 gLS~L~t~s~~~m~~~i~~L~~------~g~~v~v~vGGa~~s~~~ta~~i~~~y-~gad~y~ 862 (1229)
T PRK09490 807 GLSGLITPSLDEMVHVAKEMER------QGFTIPLLIGGATTSKAHTAVKIAPNY-SGPVVYV 862 (1229)
T ss_pred EEcCcchhhHHHHHHHHHHHHh------cCCCCeEEEEeeccchhhhhhhhhhcc-cCCcEEe
Confidence 9998885 3443 446777775 345677776655444333 11112 2777664
No 274
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=53.80 E-value=83 Score=22.80 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC--CHH
Q 026988 72 DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM--DGC 149 (230)
Q Consensus 72 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~--dg~ 149 (230)
........+...|...|..+....+.......+. ...+-|++|+ +..++. +-.
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~------------------------~~~~~d~vi~-iS~sG~t~~~~ 64 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPTEALHGDLG------------------------MVTPGDVVIA-ISNSGETDELL 64 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccchhhccccC------------------------cCCCCCEEEE-EeCCCCCHHHH
Confidence 4445566778888888888877765532221111 1123344443 344443 345
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA 198 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~ 198 (230)
++++..|+ ..+|+|.+|+..+..... .++..|.-|.
T Consensus 65 ~~~~~a~~--------~g~~vi~iT~~~~s~la~-----~ad~~l~~~~ 100 (128)
T cd05014 65 NLLPHLKR--------RGAPIIAITGNPNSTLAK-----LSDVVLDLPV 100 (128)
T ss_pred HHHHHHHH--------CCCeEEEEeCCCCCchhh-----hCCEEEECCC
Confidence 56666654 358999999977655433 3666666553
No 275
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=53.76 E-value=86 Score=26.46 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=39.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
-+|.-+|-++.....-++.++..|+ .+. ...++.+.+..+.... .....||+||+|.
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~--------------------~~~~~fD~iFiDa 164 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDG--------------------KYHGTFDFIFVDA 164 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhcc--------------------ccCCcccEEEecC
Confidence 4899999999999989999998885 343 3344444444432100 0025799999998
Q ss_pred C
Q 026988 142 Q 142 (230)
Q Consensus 142 ~ 142 (230)
.
T Consensus 165 d 165 (247)
T PLN02589 165 D 165 (247)
T ss_pred C
Confidence 7
No 276
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=53.70 E-value=1.2e+02 Score=24.70 Aligned_cols=62 Identities=8% Similarity=0.168 Sum_probs=31.6
Q ss_pred EEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHH
Q 026988 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206 (230)
Q Consensus 138 l~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~ 206 (230)
++.+.+-.-++.+.++.+++..+ ..+ +|=.-.-.+.+....+.++|++ |+.-|..-.++.+.
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~~-----~~~-~iGaGTV~~~~~~~~a~~aGA~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKALG-----DRA-LIGAGTVLSPEQVDRLADAGGR-LIVTPNTDPEVIRR 99 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHcC-----CCc-EEeEEecCCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 44455555566666776664211 111 1212222345667777888887 55556444444433
No 277
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=53.56 E-value=30 Score=32.66 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
++||+||....+-..+.+.|...|+.+.++.+.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~ 34 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNH 34 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECC
Confidence 489999999999999999999999988887653
No 278
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=53.51 E-value=1.3e+02 Score=25.10 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=44.7
Q ss_pred CcEEEEE------eccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 64 GLSVLLV------EDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 64 ~~~iLiV------dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
+.+|++| +|.........+.+.+.|+.+......++..+.+. ..|+|
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~---------------------------~ad~I 83 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE---------------------------NAEAI 83 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh---------------------------cCCEE
Confidence 4577776 34455556788999999999888887776665554 46777
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q 026988 138 LMDCQMGSMDGCKATRVIRR 157 (230)
Q Consensus 138 l~D~~mp~~dg~~l~~~lr~ 157 (230)
++ ++.|-+.+++.+++
T Consensus 84 ~v----~GGnt~~l~~~l~~ 99 (233)
T PRK05282 84 FV----GGGNTFQLLKQLYE 99 (233)
T ss_pred EE----CCccHHHHHHHHHH
Confidence 76 57777777776654
No 279
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=53.48 E-value=1e+02 Score=23.79 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=46.4
Q ss_pred cEEEEEeccHHHHHHHHHH---HHhcCCeEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 65 LSVLLVEDQAVLQRIGIRM---LKKLGAGVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~---L~~~g~~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.-+.+|+||+..+..|++. |++.+-.-.++ -...+++..|++. -+.
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l-------------------------apg----- 112 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL-------------------------APG----- 112 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH-------------------------cCC-----
Confidence 4588999999999999754 44555432333 2445677777643 133
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEe
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls 174 (230)
+.|--.+|-++.+++. ..|-|+++..
T Consensus 113 l~l~P~sgddLA~rL~--------l~HYPvLIt~ 138 (142)
T PF11072_consen 113 LPLLPVSGDDLARRLG--------LSHYPVLITA 138 (142)
T ss_pred CeecCCCHHHHHHHhC--------CCcccEEeec
Confidence 3444578999999884 3566777654
No 280
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=53.45 E-value=2.1e+02 Score=27.37 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=76.3
Q ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC--CCHHHHHHHHHHhh
Q 026988 82 RMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS--MDGCKATRVIRRLE 159 (230)
Q Consensus 82 ~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~--~dg~~l~~~lr~~~ 159 (230)
......||-...+.-|.-.-+.+...+++. ...++......++.+++|-.|-. .-|-.++++.|+
T Consensus 53 AAaAnAGhwaELAGGGq~t~e~~~~~i~ql-----------~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara-- 119 (717)
T COG4981 53 AAAANAGHWAELAGGGQVTEEIFTNAIEQL-----------VSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARA-- 119 (717)
T ss_pred HHHhcCCceeeecCCcccCHHHHHHHHHHH-----------HhccCCCccceeeEEEechHHhhhcCChHHHHHHHHh--
Confidence 344456787777776655445554444432 11233334567999999998864 568889999985
Q ss_pred hhhhcCCCceEEEEecCC-ChH----hHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 160 AEAETGQSIPIIAFTALV-TAD----NERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 160 ~~~~~~~~~pii~ls~~~-~~~----~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.+..+--+++++-- +.+ .+......|+...-.||=+.+++.+.|+-.-..
T Consensus 120 ----~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~ 174 (717)
T COG4981 120 ----SGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKAN 174 (717)
T ss_pred ----cCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcC
Confidence 56667777776643 332 344555668888899999999999888755443
No 281
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.22 E-value=1.3e+02 Score=24.69 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
+....+.++++...+..++ ..+. .+.+.|..-+.++.++.+++. .+++.
T Consensus 9 Vir~~~~~~a~~ia~al~~----------------------gGi~--~iEit~~tp~a~~~I~~l~~~------~~~~~- 57 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAA----------------------GGLP--AIEITLRTPAALDAIRAVAAE------VEEAI- 57 (201)
T ss_pred EEEcCCHHHHHHHHHHHHH----------------------CCCC--EEEEeCCCccHHHHHHHHHHH------CCCCE-
Confidence 4445677778777776543 2223 566677677789999998852 22332
Q ss_pred EEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 171 IAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
|=.-.-.+.+....+.++|++ |+.-|....++.+.-
T Consensus 58 vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~a 93 (201)
T PRK06015 58 VGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAAA 93 (201)
T ss_pred EeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 222233467788999999999 888886666555543
No 282
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=53.13 E-value=78 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=31.2
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.+.+.+|||++-....-..+.+.|.+.|..+.+++.-.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 36788999999999887888999988998877766543
No 283
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.96 E-value=1.5e+02 Score=25.48 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=44.3
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+.+. ..+|+|.+|-. +--++-+.++.+ . ...++ ..+
T Consensus 187 VEv~tleea~~A~~--------------------------~GaDiI~LDn~----~~e~l~~~v~~~-~--~~~~~-~~i 232 (273)
T PRK05848 187 IECESLEEAKNAMN--------------------------AGADIVMCDNM----SVEEIKEVVAYR-N--ANYPH-VLL 232 (273)
T ss_pred EEeCCHHHHHHHHH--------------------------cCCCEEEECCC----CHHHHHHHHHHh-h--ccCCC-eEE
Confidence 45778889988875 45899998843 322222222211 0 01223 357
Q ss_pred EEecCCChHhHHHHHHcCCCeeE
Q 026988 172 AFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
..|+.-+++...+..+.|+|.+-
T Consensus 233 eAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 233 EASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred EEECCCCHHHHHHHHHcCCCEEE
Confidence 77877899999999999999553
No 284
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.92 E-value=1.9e+02 Score=26.73 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=44.3
Q ss_pred CCcEEEEEecc---HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQ---AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~---~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+.++++|--| |...+.|+.+-++.|..+....+..+.++...+..+.+ ....+|+||+
T Consensus 127 ~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a------------------k~~~~DvvIv 188 (451)
T COG0541 127 KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA------------------KEEGYDVVIV 188 (451)
T ss_pred cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH------------------HHcCCCEEEE
Confidence 56677777644 56667777777777766665544444444443333222 2556899999
Q ss_pred ecCCCCCCHHHHHHHHHHhh
Q 026988 140 DCQMGSMDGCKATRVIRRLE 159 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~ 159 (230)
|.-=-..---+++..++++.
T Consensus 189 DTAGRl~ide~Lm~El~~Ik 208 (451)
T COG0541 189 DTAGRLHIDEELMDELKEIK 208 (451)
T ss_pred eCCCcccccHHHHHHHHHHH
Confidence 97421111234555555543
No 285
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=52.77 E-value=1.5e+02 Score=25.55 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=61.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcH----HHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGE----AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~----~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
-+||-+|-|+.-+....+.-++.|..+. .+-.-. ....++. ...||++++
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~-------------------------~~~PDIlVi 159 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIE-------------------------EVRPDILVI 159 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHH-------------------------HhCCCEEEE
Confidence 3999999999999888888888887654 222222 2333333 568998775
Q ss_pred e---cCC------CCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 140 D---CQM------GSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 140 D---~~m------p~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
= -.. .+++. .+.++..|+..|+ .=-+|++++-+++ ..+..+++||+ |-.-|
T Consensus 160 TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~-----~D~LVIFAGACQS-~yEall~AGAN-FASSP 226 (283)
T TIGR02855 160 TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPS-----LDQLVIFAGACQS-HFESLIRAGAN-FASSP 226 (283)
T ss_pred eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCC-----cccEEEEcchhHH-HHHHHHHcCcc-ccCCc
Confidence 2 111 11121 3344455543221 1246777776654 56778999998 55554
No 286
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=52.14 E-value=1.4e+02 Score=24.85 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=39.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|++++-... +.-|..+++-+- ..+|+|+.-. ... ...... .+++.++-+.+++.+.+..++.
T Consensus 268 ~adi~v~ps~~-e~~~~~~~Ea~a---------~g~PvI~~~~-~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~ 331 (365)
T cd03807 268 ALDVFVLSSLS-EGFPNVLLEAMA---------CGLPVVATDV-GDN---AELVGD--TGFLVPPGDPEALAEAIEALLA 331 (365)
T ss_pred hCCEEEeCCcc-ccCCcHHHHHHh---------cCCCEEEcCC-CCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHh
Confidence 35777764443 333445555443 3478776322 221 122222 6788999999999999998887
Q ss_pred hc
Q 026988 213 RK 214 (230)
Q Consensus 213 ~~ 214 (230)
..
T Consensus 332 ~~ 333 (365)
T cd03807 332 DP 333 (365)
T ss_pred Ch
Confidence 53
No 287
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=52.13 E-value=1.6e+02 Score=25.72 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=18.6
Q ss_pred CCcEEEEEeccHHH---HHHHHHHHHhcCCeEEEE
Q 026988 63 EGLSVLLVEDQAVL---QRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 63 ~~~~iLiVdd~~~~---~~~l~~~L~~~g~~v~~~ 94 (230)
.+.+|++++-|..- ...+..+....+..+...
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 45688888876532 234455555666665544
No 288
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=51.94 E-value=2e+02 Score=26.87 Aligned_cols=124 Identities=11% Similarity=0.092 Sum_probs=64.9
Q ss_pred CCcEE-EEEeccHHHHHHHHHHHHhcCCeEEEEcC----cHHHHHHHHHHHHhcccccchhcccc--CCcccccCCCCcc
Q 026988 63 EGLSV-LLVEDQAVLQRIGIRMLKKLGAGVTLVKD----GEAAVEAMTLMINAAGKNHQIQNLHH--GSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~i-LiVdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~al~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d 135 (230)
.+++| ..|...+.....+..+++ .|.++.+++. ...+++.+++.....+. ..+-+.+. .+........-.|
T Consensus 228 GrL~Vgaavg~~~~~~~~~~~l~~-ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~-~~v~aG~V~t~~~a~~~~~aGad 305 (495)
T PTZ00314 228 GQLLVGAAISTRPEDIERAAALIE-AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPH-VDIIAGNVVTADQAKNLIDAGAD 305 (495)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCCchHHHHHHHHHHhhCCC-ceEEECCcCCHHHHHHHHHcCCC
Confidence 34455 466666666555555554 5777766542 23345555554433221 11112111 1222222344567
Q ss_pred EEEEec--------------CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 136 LILMDC--------------QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 136 lvl~D~--------------~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.|.+.+ ..|. +..+..+.+. .....+|||.=-+-....++..++.+||+.+..
T Consensus 306 ~I~vg~g~Gs~~~t~~~~~~g~p~---~~ai~~~~~~----~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 306 GLRIGMGSGSICITQEVCAVGRPQ---ASAVYHVARY----ARERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred EEEECCcCCcccccchhccCCCCh---HHHHHHHHHH----HhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 775533 2232 2333333221 012347888777888899999999999997754
No 289
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=51.85 E-value=84 Score=26.90 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=45.5
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
-..+.+.+++.+.+. ..+|.|.+|-..|. +--++.+.++. ..+++|+
T Consensus 187 gVev~t~eea~~A~~--------------------------~gaD~I~ld~~~p~-~l~~~~~~~~~------~~~~i~i 233 (272)
T cd01573 187 VVEVDSLEEALAAAE--------------------------AGADILQLDKFSPE-ELAELVPKLRS------LAPPVLL 233 (272)
T ss_pred EEEcCCHHHHHHHHH--------------------------cCCCEEEECCCCHH-HHHHHHHHHhc------cCCCceE
Confidence 345778888777653 45899999955453 11233443442 1235776
Q ss_pred EEEecCCChHhHHHHHHcCCCeeEe
Q 026988 171 IAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+++-+ -+.+.+....+.|++.+..
T Consensus 234 ~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 234 AAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEECC-CCHHHHHHHHHcCCcEEEE
Confidence 65554 5788999999999997643
No 290
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=51.32 E-value=1.5e+02 Score=25.06 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=42.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.|++++=..-++.-|..+++.+- ..+|+|+... .. ..+....+..+++..|-+.+++..+|...+.
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a---------~G~PvI~~~~-~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQA---------MGRPVIASDH-GG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHh---------cCCCEEEcCC-CC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 66766543234455666666553 3578876432 22 2344566778999999999999999975554
No 291
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=51.27 E-value=83 Score=24.03 Aligned_cols=35 Identities=6% Similarity=0.217 Sum_probs=21.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
...||+||+|. ++.+. .....++ ..+..||+++..
T Consensus 89 ~~~~D~iiIDt--aG~~~-~~~~~~~--------~Ad~~ivv~tpe 123 (148)
T cd03114 89 AAGFDVIIVET--VGVGQ-SEVDIAS--------MADTTVVVMAPG 123 (148)
T ss_pred hcCCCEEEEEC--CccCh-hhhhHHH--------hCCEEEEEECCC
Confidence 34799999999 55442 2233343 244667777765
No 292
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.19 E-value=1.9e+02 Score=26.06 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCccEEEEecCC-------CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQM-------GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~m-------p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
....|+|.++..- +..+-.++.+.+++ ..+|||. ..-.+.+....+++.|+|.+..
T Consensus 152 eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~--------~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 152 EAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE--------LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred HCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH--------CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4568999996532 22244555555553 2578876 4445677788888999998744
No 293
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=51.02 E-value=61 Score=27.09 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=22.0
Q ss_pred CCceEEEEecCCChH---hHHHHHHcCCCee---EeCC
Q 026988 166 QSIPIIAFTALVTAD---NERECFNSGMDTF---LNKP 197 (230)
Q Consensus 166 ~~~pii~ls~~~~~~---~~~~~~~~G~~~~---L~KP 197 (230)
....|+++|++.... ......+.|+.+| +.|+
T Consensus 135 ~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 135 LGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 346799999997654 3445567888754 6665
No 294
>PRK15320 transcriptional activator SprB; Provisional
Probab=50.60 E-value=73 Score=26.32 Aligned_cols=98 Identities=9% Similarity=-0.070 Sum_probs=64.5
Q ss_pred EEEEEeccHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKL--GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~--g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.|+|-+++=.+.-.+..++++. |..+.++.+-...+..++ ..||.+++=.--
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~--------------------------~~p~a~lil~l~ 56 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLS--------------------------DMPDAGLILALN 56 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHh--------------------------hCCCceEEEeeC
Confidence 5778888888888889988875 557777777666666664 457776665544
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
|..--+ +...+++ ..++-||++++..---.+..-..-.|+-+|+.|
T Consensus 57 p~eh~~-lf~~l~~------~l~~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 57 PHEHVY-LFHALLT------RLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred chhHHH-HHHHHHH------HcCCCceEEEecceeehhhhhhhhhcchhHHHH
Confidence 544333 3344554 234578999987655545545556777777766
No 295
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=50.56 E-value=37 Score=27.37 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=28.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
++|+|+|-.--+...+.+.|+..|+.+....+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~ 32 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD 32 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC
Confidence 58999999988889999999999999888865
No 296
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=50.43 E-value=32 Score=27.03 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=30.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
...+++|++|......-.=+..+|.+.|..|..+..-..
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~ 71 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK 71 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC
Confidence 367889999999999999999999999999999876543
No 297
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=50.15 E-value=34 Score=32.31 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=26.1
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCe-EEEEc
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAG-VTLVK 95 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~ 95 (230)
+||+||....+-..+.++|.+.|+. +.+..
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~ 31 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVR 31 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEEC
Confidence 4899999999999999999999985 66663
No 298
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=50.07 E-value=1e+02 Score=26.57 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=47.2
Q ss_pred ccEEEE-ecCCCCC-CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 134 YDLILM-DCQMGSM-DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 134 ~dlvl~-D~~mp~~-dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
.|.|++ |-+..-. +--+.+++.|+ ..++.+.|=+-. .+.+...+++++|+|-.+.-.++++++.+++..+
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~------~~~~~~kIEVEv-esle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARA------AAPFTKKIEVEV-ESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHH------hCCCCceEEEEc-CCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 455554 4333222 22346677775 234455444433 5678889999999999999999999999999875
No 299
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.06 E-value=61 Score=28.05 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=48.1
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
...+.+|+||+.....-.-+..+|...|..|.++.+-..-+... ....|+|+.-
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~--------------------------~~~ADIvV~A 207 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFY--------------------------TQNADIVCVG 207 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHH--------------------------HHhCCEEEEe
Confidence 46788999999999999999999999999999987765544322 2347888888
Q ss_pred cCCCCCCH
Q 026988 141 CQMGSMDG 148 (230)
Q Consensus 141 ~~mp~~dg 148 (230)
..-|+.-.
T Consensus 208 vG~p~~i~ 215 (285)
T PRK14191 208 VGKPDLIK 215 (285)
T ss_pred cCCCCcCC
Confidence 87776544
No 300
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=49.97 E-value=2e+02 Score=25.97 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=38.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|+.+.= ...+.-|+-+++-+- ..+|+|+.........+......|..+++.. +++++.++|.+++..
T Consensus 325 adv~v~~-s~~E~Fgi~~lEAMa---------~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 325 ASIGLHT-MWNEHFGIGVVEYMA---------AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred CeEEEEC-CccCCcccHHHHHHH---------cCCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 5666552 333444666666554 3466775543222222211111577888864 899999999998874
No 301
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=49.86 E-value=1.5e+02 Score=24.56 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=42.4
Q ss_pred cEEEEecCCCCC-CH--HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 135 DLILMDCQMGSM-DG--CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 135 dlvl~D~~mp~~-dg--~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++++|+..-++ .| +++++.+.+ ...+|+++-.+-.+.++...++..|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~-------~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAA-------RADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHH-------hcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 489999977542 33 566777764 2468999999999999999999999998875
No 302
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.43 E-value=1.4e+02 Score=23.97 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=45.5
Q ss_pred CCccEEEEecCCCC-------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCC
Q 026988 132 PHYDLILMDCQMGS-------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQ 199 (230)
Q Consensus 132 ~~~dlvl~D~~mp~-------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~ 199 (230)
..+|.+++....|. ..|++.++.+.+ ..++||+++-+- +.++...+...|++.+ +.+.-+
T Consensus 114 ~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~-------~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~ 185 (201)
T PRK07695 114 NGADYVVYGHVFPTDCKKGVPARGLEELSDIAR-------ALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSAN 185 (201)
T ss_pred cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH-------hCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCC
Confidence 35677776543221 236677777764 235899988776 7888999999999876 233334
Q ss_pred HHHHHHHHHHHH
Q 026988 200 EHLLAAAIVETI 211 (230)
Q Consensus 200 ~~~L~~~l~~~l 211 (230)
+.+....+++.+
T Consensus 186 p~~~~~~~~~~~ 197 (201)
T PRK07695 186 PYSKAKRYAESI 197 (201)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 303
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=49.11 E-value=1.5e+02 Score=24.47 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCccEE-EEecCCCCCCHHHH----HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHH
Q 026988 132 PHYDLI-LMDCQMGSMDGCKA----TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQEH 201 (230)
Q Consensus 132 ~~~dlv-l~D~~mp~~dg~~l----~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~ 201 (230)
...|.| ++..+ |+.+|..+ +.++++++.. ... ..|.+.+.-+.+....+.++|++.+ +.+.-++.
T Consensus 137 ~~vD~Vl~m~v~-pG~~gq~~~~~~~~ki~~~~~~---~~~-~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~ 211 (228)
T PTZ00170 137 DLVDMVLVMTVE-PGFGGQSFMHDMMPKVRELRKR---YPH-LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRK 211 (228)
T ss_pred chhhhHHhhhcc-cCCCCcEecHHHHHHHHHHHHh---ccc-CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHH
Confidence 345654 34443 66665322 3455443322 112 3477788888899999999999954 55544566
Q ss_pred HHHHHHHHHHH
Q 026988 202 LLAAAIVETIA 212 (230)
Q Consensus 202 ~L~~~l~~~l~ 212 (230)
+-...++..+.
T Consensus 212 ~~~~~i~~~~~ 222 (228)
T PTZ00170 212 QAIELLRESVQ 222 (228)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 304
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.98 E-value=1.7e+02 Score=25.05 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=57.3
Q ss_pred cEEEEEe-----ccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 65 LSVLLVE-----DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 65 ~~iLiVd-----d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
|||.+|- +.......+.++|++.|+.+.+..+..+........ .........+|+|++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~-----------------~~~~~~~~~~d~vi~ 63 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEE-----------------DVLPLEEMDVDFIIA 63 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccc-----------------ccccccccCCCEEEE
Confidence 4566662 223345567778888898888764322211100000 000001235777766
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
-+.|| .+++.++ . ....+||+.+... -.+|+. .++++++...+..++...
T Consensus 64 ----iGGDG-TlL~a~~-~-----~~~~~pi~gIn~G-------------~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 64 ----IGGDG-TILRIEH-K-----TKKDIPILGINMG-------------TLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred ----EeCcH-HHHHHHH-h-----cCCCCeEEEEeCC-------------CCCccc-cCCHHHHHHHHHHHHcCC
Confidence 36677 2333343 1 2246888877642 224444 467888888888887653
No 305
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=48.84 E-value=78 Score=29.72 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=38.8
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
....|+|.+|..-.. ..-++.+++||+. .+.++||+ .+-.+.+....+.++|+|....
T Consensus 258 ~ag~d~i~iD~~~g~~~~~~~~i~~ik~~------~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 258 KAGVDVVVLDSSQGDSIYQLEMIKYIKKT------YPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHHHHHh------CCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 446999999995322 2235788888863 33344443 3345677888999999997743
No 306
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=48.75 E-value=96 Score=22.07 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=51.9
Q ss_pred EEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCC
Q 026988 68 LLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMD 147 (230)
Q Consensus 68 LiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~d 147 (230)
.+.=.|......|.++|...|+.|.... +++ ...-|++|+|.....
T Consensus 3 wL~irNa~Le~yL~~lL~~~G~~v~~y~-~q~-------------------------------~~~~DvlItD~~~~~-- 48 (92)
T PF09456_consen 3 WLAIRNAYLESYLQRLLSYHGFQVQRYE-GQQ-------------------------------PDADDVLITDYEPQV-- 48 (92)
T ss_dssp EEE---HHHHHHHHHHHCTTTEEEEE-S-S-----------------------------------TT-EEEEESS-S---
T ss_pred EEEehhHHHHHHHHHHHHHCCcEEEEec-CCC-------------------------------CCCCcEEEECCCccc--
Confidence 4444677788899999999999988876 422 235799999986531
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
..+---.|.+++... ....+.....++.-...+.+|...|.++
T Consensus 49 ----------------~~~~~a~I~~s~~hi----G~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 49 ----------------AWPGRAVIRFSRRHI----GPPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp -------------------SSEEEEEESS-S----SS--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred ----------------CCcceEEEEEchHhC----CCccccCCCcEEeccCCHHHHHHHHHHh
Confidence 112234666666432 2334555677888888888888777664
No 307
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=48.60 E-value=1.1e+02 Score=25.25 Aligned_cols=57 Identities=16% Similarity=0.371 Sum_probs=39.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe--EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG--VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
-+|.-+|-++......++.++..|+. +. ...++.+.+..+... .....||+|++|.
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~---------------------~~~~~fD~VfiDa 152 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN---------------------DPKPEFDFAFVDA 152 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC---------------------CCCCCCCEEEECC
Confidence 38999999999999999999998863 33 334555555444210 0024799999997
Q ss_pred C
Q 026988 142 Q 142 (230)
Q Consensus 142 ~ 142 (230)
.
T Consensus 153 ~ 153 (234)
T PLN02781 153 D 153 (234)
T ss_pred C
Confidence 5
No 308
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=48.44 E-value=1.1e+02 Score=22.45 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEEEEeccHHHHHHHHHH---HHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 66 SVLLVEDQAVLQRIGIRM---LKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~---L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
-+.+|+||+..+..|++. |++.+.. ..+--+..+++..|++. -|. +
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l-------------------------apg-----l 75 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL-------------------------APG-----L 75 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH-------------------------cCC-----C
Confidence 578999999999999754 4445442 22222445677777643 122 3
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEec
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
.|--.+|-++.+++. ..+-|+++...
T Consensus 76 ~l~P~sgddLa~rL~--------l~hYPvLit~t 101 (105)
T TIGR03765 76 PLLPVSGDDLAERLG--------LRHYPVLITAT 101 (105)
T ss_pred cccCCCHHHHHHHhC--------CCcccEEEecC
Confidence 455678999999884 25567776543
No 309
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=48.32 E-value=1.7e+02 Score=24.76 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec-C--CCCCCH
Q 026988 73 QAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC-Q--MGSMDG 148 (230)
Q Consensus 73 ~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~-~--mp~~dg 148 (230)
++.....+.+..+..|..+. .+.+.+++..+.. ..+|+|-+.- . --..|
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--------------------------~gadiIgin~rdl~~~~~d- 197 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--------------------------LGAPLIGINNRNLKTFEVD- 197 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--------------------------cCCCEEEECCCCcccccCC-
Confidence 34444555556666777643 4667776655442 3466665431 1 11112
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
++....+....+ ...++|..++-.+.++...+.+.|++.++.
T Consensus 198 ~~~~~~l~~~~p-----~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 198 LETTERLAPLIP-----SDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred HHHHHHHHHhCC-----CCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 555555553111 135899999999999999999999998754
No 310
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=48.31 E-value=1.1e+02 Score=28.58 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=39.7
Q ss_pred CCCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....|.|++|..-+... -.+++++||+ ..+++|||+ -.-.+.+....+.++|++.+-
T Consensus 235 ~aGVd~i~~D~a~g~~~~~~~~i~~i~~------~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQVKMISAIKAVRA------LDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HhCCCEEEEeCCCCCcHHHHHHHHHHHH------HCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 44689999999885433 3567777775 335577776 224567778888999998653
No 311
>PLN02366 spermidine synthase
Probab=48.20 E-value=96 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=17.4
Q ss_pred CCCccEEEEecCCCCCCH-----HHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDG-----CKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg-----~~l~~~lr~ 157 (230)
...||+||+|..-|.... .++.+.+++
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 457999999987664322 345666554
No 312
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=47.89 E-value=68 Score=27.02 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc-CCeEEEEcCc----HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL-GAGVTLVKDG----EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~-g~~v~~~~~~----~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
..+.+|.+++..+...+.+.+.|++. |.++.-+.+| ++. +.+.+.|+ ...||+
T Consensus 103 ~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~-~~i~~~I~---------------------~s~~di 160 (243)
T PRK03692 103 KEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQR-QALFERIH---------------------ASGAKI 160 (243)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHH-HHHHHHHH---------------------hcCCCE
Confidence 34689999999999888888888654 4454433322 222 22222222 668999
Q ss_pred EEEecCCCCCCHHHHHHHHH
Q 026988 137 ILMDCQMGSMDGCKATRVIR 156 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr 156 (230)
|++-+.+|...-+ +.+.+
T Consensus 161 l~VglG~PkQE~~--~~~~~ 178 (243)
T PRK03692 161 VTVAMGSPKQEIF--MRDCR 178 (243)
T ss_pred EEEECCCcHHHHH--HHHHH
Confidence 9999999987654 44444
No 313
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=47.82 E-value=1.8e+02 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~ 94 (230)
+..-.|||++.....-......|+..|+.|.-.
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 445589999999999999999999999977654
No 314
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=47.65 E-value=68 Score=25.35 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcC-C-eEEEEcCcHHH----------HHHHHHHHHhcccccchhccccCCccccc
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLG-A-GVTLVKDGEAA----------VEAMTLMINAAGKNHQIQNLHHGSNLETH 129 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g-~-~v~~~~~~~~a----------l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (230)
.++..|+++|.+..-...+.+.|.... + .+..+..|... .+.+...... -..|...
T Consensus 20 ~~~~~v~~ld~~~d~~~qI~~~L~~~~~i~~lhivsHG~~G~l~LG~~~l~~~~L~~~~~~------------l~~w~~~ 87 (165)
T PF14252_consen 20 PPGVEVVILDPSRDGLEQIAQALAGYQNIDALHIVSHGSPGALQLGNTWLSAETLEQYADE------------LAQWGQA 87 (165)
T ss_pred cCCCEEEEEeCCCchHHHHHHHHhcCCCCceEEEEcCCCcceEEECCceeCHHHHHHHHHH------------HHHHHHH
Confidence 456788899988888888888888754 3 23333333211 0111100000 0001111
Q ss_pred CCCCccEEEEecCCCC-CCHHHHHHHHHHh
Q 026988 130 NSPHYDLILMDCQMGS-MDGCKATRVIRRL 158 (230)
Q Consensus 130 ~~~~~dlvl~D~~mp~-~dg~~l~~~lr~~ 158 (230)
....-|+.|.-|+... ..|-+++++|.++
T Consensus 88 L~~~~~IlLyGC~vaag~~G~~fv~~L~~l 117 (165)
T PF14252_consen 88 LADDGDILLYGCNVAAGEEGQEFVQRLAQL 117 (165)
T ss_pred hCCCCcEEEEcCccCcchhHHHHHHHHHHH
Confidence 2456789999998864 5799999999864
No 315
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=47.64 E-value=2e+02 Score=25.30 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=45.7
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC--CCC---CCHHHHHHHHHHhhhhhhcCC
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ--MGS---MDGCKATRVIRRLEAEAETGQ 166 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~--mp~---~dg~~l~~~lr~~~~~~~~~~ 166 (230)
..+.+.+++.+.+... ......+|+|++|-. -|+ .+--++-+.++.+ .
T Consensus 208 VEv~tleea~ea~~~~--------------------~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~-------~ 260 (308)
T PLN02716 208 VETRTLEEVKEVLEYL--------------------SDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI-------N 260 (308)
T ss_pred EEECCHHHHHHHHHhc--------------------ccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh-------C
Confidence 4577888888887410 001256899999955 122 1333333333321 1
Q ss_pred CceEEEEecCCChHhHHHHHHcCCCe
Q 026988 167 SIPIIAFTALVTADNERECFNSGMDT 192 (230)
Q Consensus 167 ~~pii~ls~~~~~~~~~~~~~~G~~~ 192 (230)
....+-.|+.-+.+.+......|+|-
T Consensus 261 ~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 261 GRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCE
Confidence 12347888888999999999999983
No 316
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=47.64 E-value=36 Score=28.59 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=42.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC-----CeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCC-CccEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG-----AGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP-HYDLI 137 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlv 137 (230)
.+|-+||=|+...+..++.+.... -++. ...||...++.. .. .||+|
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--------------------------~~~~yDvI 154 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--------------------------QEEKYDVI 154 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS--------------------------SST-EEEE
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc--------------------------cCCcccEE
Confidence 478888988888888888776431 1333 455555544432 33 79999
Q ss_pred EEecCCCCCCH-----HHHHHHHHH
Q 026988 138 LMDCQMGSMDG-----CKATRVIRR 157 (230)
Q Consensus 138 l~D~~mp~~dg-----~~l~~~lr~ 157 (230)
++|..-|...+ .++.+.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred EEeCCCCCCCcccccCHHHHHHHHh
Confidence 99998876543 466666654
No 317
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=47.45 E-value=1.5e+02 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
++++++.+++.. ...+|++...+-.+.++..++...|+++++.
T Consensus 158 ~~~~~~~l~~~~-----~~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 158 DLNTTERLAPLI-----PKDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CHHHHHHHHHhC-----CCCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 356677776421 1357999999998999999999999998854
No 318
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.30 E-value=2.2e+02 Score=29.90 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=64.4
Q ss_pred EEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 66 SVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 66 ~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
+|++. |-+..=...+.-+|+..||+|.-.. ..++.++... ...+|+|-
T Consensus 734 kVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~-------------------------e~~~diVg 788 (1178)
T TIGR02082 734 KIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAK-------------------------DHNADVIG 788 (1178)
T ss_pred eEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-------------------------HhCCCEEE
Confidence 77776 6777777788888999999998664 3455555554 56899999
Q ss_pred EecCCC-CCCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHH---HHHcCCCeeEe
Q 026988 139 MDCQMG-SMDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE---CFNSGMDTFLN 195 (230)
Q Consensus 139 ~D~~mp-~~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~---~~~~G~~~~L~ 195 (230)
+...|. .+.. .++++.|++ .+..+||++=-+..+...... ....|++.|-.
T Consensus 789 LS~Lmt~t~~~m~~vi~~L~~------~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 789 LSGLITPSLDEMKEVAEEMNR------RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred EcCcccccHHHHHHHHHHHHh------cCCCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 998885 3443 446777775 344577776655444444322 12238776643
No 319
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.19 E-value=2.7e+02 Score=26.76 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=37.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
.|+.++-. ..+.-|..+++-+- ..+|||....... .+....|.++|+.+|.+...+...+
T Consensus 473 ADVfVlPS-~~EGfp~vlLEAMA---------~GlPVVATdvGG~----~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 473 MNVFILFS-RYEGLPNVLIEAQM---------VGVPVISTPAGGS----AECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred CCEEEEcc-cccCccHHHHHHHH---------hCCCEEEeCCCCc----HHHcccCCcEEEECCCChhhHHHHH
Confidence 57776632 23444566666554 3578885543322 3445578999999998876666554
No 320
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=47.18 E-value=1.6e+02 Score=24.02 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=42.0
Q ss_pred CCCccEEEEecCCCC---------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHH---HHHcCCCeeEeCCC
Q 026988 131 SPHYDLILMDCQMGS---------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE---CFNSGMDTFLNKPA 198 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~---------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~---~~~~G~~~~L~KP~ 198 (230)
...+|.|++|+.-.. .+-.+++..++.. ......+++=....+.....+ +...|+++++.-=+
T Consensus 19 ~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~-----~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~v 93 (221)
T PF03328_consen 19 ASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAA-----RAAGSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKV 93 (221)
T ss_dssp TTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHH-----TTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT-
T ss_pred hcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccc-----ccccccceecCCCCCcchhhhhhhhcccCCCeeecccc
Confidence 678999999998654 2223334443321 112234444444445555555 89999998855444
Q ss_pred -CHHHHHHHHHHH
Q 026988 199 -QEHLLAAAIVET 210 (230)
Q Consensus 199 -~~~~L~~~l~~~ 210 (230)
+.+++...+..+
T Consensus 94 es~~~~~~~~~~~ 106 (221)
T PF03328_consen 94 ESAEDARQAVAAL 106 (221)
T ss_dssp -SHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 455655554433
No 321
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=47.15 E-value=86 Score=25.86 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=42.5
Q ss_pred cEEEEecCCCC-CCH--HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 135 DLILMDCQMGS-MDG--CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 135 dlvl~D~~mp~-~dg--~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+|++|+.--+ +.| +++++.+.+ ...+|+++--+-.+.++...+...|+++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~-------~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLE-------LSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHh-------hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 58999998654 333 678888874 2458999988888999999999999998875
No 322
>PLN02476 O-methyltransferase
Probab=46.69 E-value=1.1e+02 Score=26.29 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCe--EEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAG--VTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~--v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
+|.-+|-++.....-++.++..|+. +.. ..++.+.+..+. .+ .....||+||+|..
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~---~~------------------~~~~~FD~VFIDa~ 203 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI---QN------------------GEGSSYDFAFVDAD 203 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH---hc------------------ccCCCCCEEEECCC
Confidence 6899999999999999999999874 433 344444444332 10 01247999999976
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=46.66 E-value=1.3e+02 Score=23.08 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=44.9
Q ss_pred CcEEEEEeccHHH---HHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVL---QRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|++++-|..- ...+..+.+..|..+.......+..+.+...... .....+|+||+|
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~d~viiD 89 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEH------------------AREENFDVVIVD 89 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHH------------------HHhCCCCEEEEE
Confidence 5689999876432 2334444555666655543332222222111110 014568999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~ 179 (230)
..--..---+.+..++...+. ......++++.+....
T Consensus 90 t~g~~~~~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 90 TAGRLQIDENLMEELKKIKRV--VKPDEVLLVVDAMTGQ 126 (173)
T ss_pred CcccchhhHHHHHHHHHHHhh--cCCCeEEEEEECCCCh
Confidence 842211112344555443221 2234455566554433
No 324
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=46.63 E-value=1.9e+02 Score=26.02 Aligned_cols=81 Identities=17% Similarity=0.068 Sum_probs=49.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+|..+|-++...+.+++.++..+..-..+..++ +...+.. ...||+|++|- |
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~D-a~~~l~~------------------------~~~fD~V~lDP--~ 134 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKD-ANALLHE------------------------ERKFDVVDIDP--F 134 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhh-HHHHHhh------------------------cCCCCEEEECC--C
Confidence 3789999999999999988887776422222221 2222220 23599999996 3
Q ss_pred CCCHHHHHHH-HHHhhhhhhcCCCceEEEEecCCChH
Q 026988 145 SMDGCKATRV-IRRLEAEAETGQSIPIIAFTALVTAD 180 (230)
Q Consensus 145 ~~dg~~l~~~-lr~~~~~~~~~~~~pii~ls~~~~~~ 180 (230)
+ .+..++.. ++.. .+--++.+|+.+...
T Consensus 135 G-s~~~~l~~al~~~-------~~~gilyvSAtD~~~ 163 (382)
T PRK04338 135 G-SPAPFLDSAIRSV-------KRGGLLCVTATDTAP 163 (382)
T ss_pred C-CcHHHHHHHHHHh-------cCCCEEEEEecCchh
Confidence 3 34456555 5542 224688888655443
No 325
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=46.34 E-value=1.5e+02 Score=24.59 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCe--EE--EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAG--VT--LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~--v~--~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
|++.|-+++..+....+.|...|.. +. +.+..++++..+ ...|++++|+
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~---------------------------~~iDF~vVDc 123 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL---------------------------KGIDFVVVDC 123 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc---------------------------cCCCEEEEeC
Confidence 5565555555567777777766652 23 222233444332 3689999999
Q ss_pred CCCCCCHH-HHHHHHH
Q 026988 142 QMGSMDGC-KATRVIR 156 (230)
Q Consensus 142 ~mp~~dg~-~l~~~lr 156 (230)
.. .|-. ++++.++
T Consensus 124 ~~--~d~~~~vl~~~~ 137 (218)
T PF07279_consen 124 KR--EDFAARVLRAAK 137 (218)
T ss_pred Cc--hhHHHHHHHHhc
Confidence 84 3333 4555544
No 326
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.28 E-value=1.6e+02 Score=24.38 Aligned_cols=15 Identities=13% Similarity=-0.039 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHH
Q 026988 198 AQEHLLAAAIVETIA 212 (230)
Q Consensus 198 ~~~~~L~~~l~~~l~ 212 (230)
.+.+.....+.+++.
T Consensus 177 ~~~~~~~~~~~~~l~ 191 (283)
T cd06279 177 NDRASGEEAARELLD 191 (283)
T ss_pred CchHHHHHHHHHHHc
Confidence 344555556666654
No 327
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=46.19 E-value=98 Score=22.35 Aligned_cols=26 Identities=8% Similarity=-0.132 Sum_probs=15.4
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
|.+......+.+.|...||.+.....
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~AT~g 33 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLFATGG 33 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEEECcH
Confidence 33444445566666678888764433
No 328
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=45.93 E-value=1.8e+02 Score=24.27 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc---------CcHHHHHHHHHHHHhcccccchhccccCCcccccCCC
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK---------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (230)
..+.+||++=.+. -+..+.+.|.+.|+.|..+. +..+..+.+. ..
T Consensus 128 ~~~~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~-------------------------~~ 181 (255)
T PRK05752 128 VPDPRVLIMRGEG-GRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVE-------------------------AE 181 (255)
T ss_pred CCCCEEEEEccCc-cHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHH-------------------------hC
Confidence 3567898887764 45679999999998765432 1223334443 45
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVET 210 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~~ 210 (230)
.+|.|++= ++-.+-..+............+++++++. .....+.+.|+... ..+-.+.+.|.++|.+.
T Consensus 182 ~~d~v~ft------S~~~~~~~~~~~~~~~~~~~~~~~~~ig~----~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~~ 250 (255)
T PRK05752 182 RLNGLVVS------SGQGFEHLQQLAGADWPELARLPLFVPSP----RVAEQARAAGAQTVVDCRGASAAALLAALRRQ 250 (255)
T ss_pred CCCEEEEC------CHHHHHHHHHHhChhHHHhcCceEEEeCH----HHHHHHHHcCCCceeeCCCCChHHHHHHHHhc
Confidence 68887774 33222222221111101134577777754 44556678898655 57677888888887754
No 329
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=45.87 E-value=71 Score=25.93 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=34.0
Q ss_pred EEEEEecc---------HHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 66 SVLLVEDQ---------AVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 66 ~iLiVdd~---------~~~~~~l~~~L~-~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
||||+... +.....+.++|+ ..++.|.+..+.+..-.. .-..+|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~--------------------------~L~~~D 54 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPE--------------------------NLKGYD 54 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHH--------------------------CHCT-S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChh--------------------------HhcCCC
Confidence 56666544 357778899998 778999888774432110 023699
Q ss_pred EEEEecCCC
Q 026988 136 LILMDCQMG 144 (230)
Q Consensus 136 lvl~D~~mp 144 (230)
+|++.....
T Consensus 55 vvv~~~~~~ 63 (217)
T PF06283_consen 55 VVVFYNTGG 63 (217)
T ss_dssp EEEEE-SSC
T ss_pred EEEEECCCC
Confidence 999988875
No 330
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.85 E-value=44 Score=25.71 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCeEE---EEcCcHHHH-HHHH
Q 026988 76 LQRIGIRMLKKLGAGVT---LVKDGEAAV-EAMT 105 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~---~~~~~~~al-~~l~ 105 (230)
+...+.++|+++|+++. .+.|..+.+ +.+.
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~ 54 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALI 54 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHH
Confidence 45678899999998654 334444433 3344
No 331
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.73 E-value=1.7e+02 Score=24.05 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=30.7
Q ss_pred EEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHH
Q 026988 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAA 205 (230)
Q Consensus 138 l~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~ 205 (230)
++.+.|-.-+.++.++.+++..+. .+++ +|=.-.-.+.+....+.++|++ |+.-|....++.+
T Consensus 41 ~iEit~~~~~a~~~i~~l~~~~~~---~p~~-~vGaGTV~~~~~~~~a~~aGA~-FivsP~~~~~v~~ 103 (213)
T PRK06552 41 AIEVTYTNPFASEVIKELVELYKD---DPEV-LIGAGTVLDAVTARLAILAGAQ-FIVSPSFNRETAK 103 (213)
T ss_pred EEEEECCCccHHHHHHHHHHHcCC---CCCe-EEeeeeCCCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 444444445566666666642110 0112 1222222355666777777777 6666644444443
No 332
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=45.71 E-value=79 Score=26.85 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=38.8
Q ss_pred cEEEEEecc------HHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 65 LSVLLVEDQ------AVLQRIGIRMLKKLGAGVTLVKDGEA-AVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 65 ~~iLiVdd~------~~~~~~l~~~L~~~g~~v~~~~~~~~-al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
|+||++-.. ......+.+.|.+.|++|.++..... ....+. ...||+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~-------------------------~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIE-------------------------IINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChh-------------------------cccCCEE
Confidence 466666433 34666788888899998876654443 222222 5689999
Q ss_pred EEecCCCCCCHHHHHHH
Q 026988 138 LMDCQMGSMDGCKATRV 154 (230)
Q Consensus 138 l~D~~mp~~dg~~l~~~ 154 (230)
.+-......-.+..+..
T Consensus 56 h~~~~~~~~~~~~~~~~ 72 (365)
T cd03825 56 HLHWIHGGFLSIEDLSK 72 (365)
T ss_pred EEEccccCccCHHHHHH
Confidence 88654444334333333
No 333
>PLN02949 transferase, transferring glycosyl groups
Probab=45.65 E-value=2.5e+02 Score=25.94 Aligned_cols=67 Identities=15% Similarity=0.001 Sum_probs=37.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.++.+. ....+.-|+-+++-+- ..+|+|+........++..-...|..+|+.. +.+++.++|.+++.
T Consensus 355 a~~~v~-~s~~E~FGivvlEAMA---------~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 355 AVAGLH-SMIDEHFGISVVEYMA---------AGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLR 421 (463)
T ss_pred CcEEEe-CCccCCCChHHHHHHH---------cCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHh
Confidence 345443 3334555766666553 3467776643222212111112255677764 78999999998886
No 334
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=45.65 E-value=1.1e+02 Score=21.98 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=49.5
Q ss_pred EEEEEe--ccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc-EEEEecC
Q 026988 66 SVLLVE--DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD-LILMDCQ 142 (230)
Q Consensus 66 ~iLiVd--d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-lvl~D~~ 142 (230)
+|++.. ........+...|...|..+....+.......... ...-| +|++...
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~i~iS~~ 70 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAAN------------------------LTPGDVVIAISFS 70 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHc------------------------CCCCCEEEEEeCC
Confidence 566555 44556667788888888888887776555443321 12223 3444443
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~ 181 (230)
--..+..++++.+++ ..+++|++|+..+...
T Consensus 71 g~~~~~~~~~~~a~~--------~g~~iv~iT~~~~~~l 101 (139)
T cd05013 71 GETKETVEAAEIAKE--------RGAKVIAITDSANSPL 101 (139)
T ss_pred CCCHHHHHHHHHHHH--------cCCeEEEEcCCCCChh
Confidence 223334556666654 3589999999766433
No 335
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=45.60 E-value=1.8e+02 Score=24.42 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
..+|+|..-. .. .......+..+++.+|-+.+++.++|..++....
T Consensus 284 ~G~Pvi~~~~-~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 284 MGLPVISTDV-SG---IPELVEDGETGLLVPPGDPEALADAIERLLDDPE 329 (355)
T ss_pred cCCCEEecCC-CC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4578876322 22 2334566778899999999999999998876543
No 336
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=45.51 E-value=2.2e+02 Score=25.29 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCccccccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEE-----------cCcHHHHHHHHHHHHhcccccchhcccc
Q 026988 54 TGVDEKKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV-----------KDGEAAVEAMTLMINAAGKNHQIQNLHH 122 (230)
Q Consensus 54 ~~~~~~~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~-----------~~~~~al~~l~~~~~~~~~~~~~~~~~~ 122 (230)
....+..++.+.+|+|--.. ....+.+.|++.|+.+..+ ...++++..+.
T Consensus 1 ~~~~~~~pL~g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~----------------- 61 (381)
T PRK07239 1 MAQADSAPLAGFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALI----------------- 61 (381)
T ss_pred CCCCCCCCCCCcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHH-----------------
Q ss_pred CCcccccCCCCccEEEEecCCCCCCHHH-HHHHHHHhhhh---hhcCCCceEEEEecCCChHhHHHHHHcCCC-eeEeCC
Q 026988 123 GSNLETHNSPHYDLILMDCQMGSMDGCK-ATRVIRRLEAE---AETGQSIPIIAFTALVTADNERECFNSGMD-TFLNKP 197 (230)
Q Consensus 123 ~~~~~~~~~~~~dlvl~D~~mp~~dg~~-l~~~lr~~~~~---~~~~~~~pii~ls~~~~~~~~~~~~~~G~~-~~L~KP 197 (230)
...||.|++ ...+|.+ +.+.+++.... ......++++++- +.....+.+.|+. ++.+..
T Consensus 62 --------~~~~d~vvf----TS~ngv~~~~~~l~~~~~~~~~~~~l~~~~i~aVG----~~Ta~aL~~~G~~~~~~p~~ 125 (381)
T PRK07239 62 --------AAPPDIVVA----TTGIGFRGWVEAADGWGLADELLEALSSARLLARG----PKATGAIRAAGLREEWSPAS 125 (381)
T ss_pred --------cCCCCEEEE----eChHHHHHHHHHHHHcCChHHHHHHHcCCeEEEEC----ccHHHHHHHcCCCCccCCCC
Q ss_pred CCHHHHHHHHH
Q 026988 198 AQEHLLAAAIV 208 (230)
Q Consensus 198 ~~~~~L~~~l~ 208 (230)
++.+.|.+.+.
T Consensus 126 ~~~e~L~~~l~ 136 (381)
T PRK07239 126 ESSAEVLEYLL 136 (381)
T ss_pred CccHHHHHHHh
No 337
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.51 E-value=1.9e+02 Score=24.47 Aligned_cols=41 Identities=7% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+.++++|+ . ...||++=-+-.+.+....+.+.|+|.++.-
T Consensus 187 ~~~i~~lr~---~----~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 187 NELVKRLKA---Y----SAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHh---h----cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 455666654 1 2457776455556889999999999999886
No 338
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=45.50 E-value=1.7e+02 Score=25.22 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=40.8
Q ss_pred EEEEEeccHHHHHHHHHHHHhcC--C---eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLG--A---GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g--~---~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
+|.+||=|+...+.-++.|.... . ++. ...||.+-++.. ...+|+||+
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~--------------------------~~~fDvIi~ 155 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC--------------------------EEKFDVIIV 155 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC--------------------------CCcCCEEEE
Confidence 67778878877777777776543 1 222 334444433321 347999999
Q ss_pred ecCCCCCC-----HHHHHHHHHH
Q 026988 140 DCQMGSMD-----GCKATRVIRR 157 (230)
Q Consensus 140 D~~mp~~d-----g~~l~~~lr~ 157 (230)
|..-|..- ..++.+.+++
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~ 178 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRR 178 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHH
Confidence 99988322 2566666654
No 339
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.40 E-value=59 Score=26.15 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=28.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
|+|+|||-.--+...+.+.|++.|+.+.++.+.+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~ 34 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPD 34 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHH
Confidence 5799999777777788889999999999998763
No 340
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=45.26 E-value=1.8e+02 Score=24.29 Aligned_cols=79 Identities=11% Similarity=0.189 Sum_probs=57.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE--EEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL--ILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl--vl~D~ 141 (230)
+-.|||-+.-.-+-..+.+-+.+.|-.|.+|.--++.++... ...|++ .++|+
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~-------------------------~~~p~~~t~v~Dv 59 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAK-------------------------AENPEIHTEVCDV 59 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHH-------------------------hcCcchheeeecc
Confidence 457888888888888889999999999999988888888776 334544 55554
Q ss_pred CCCCCCHH-HHHHHHHHhhhhhhcCCCceEEEEec
Q 026988 142 QMGSMDGC-KATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 142 ~mp~~dg~-~l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
.+.++. +++++++. ..+.+-|++--+
T Consensus 60 --~d~~~~~~lvewLkk------~~P~lNvliNNA 86 (245)
T COG3967 60 --ADRDSRRELVEWLKK------EYPNLNVLINNA 86 (245)
T ss_pred --cchhhHHHHHHHHHh------hCCchheeeecc
Confidence 466654 47899986 345566766543
No 341
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=45.17 E-value=1e+02 Score=23.97 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=40.9
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+++.+|.++.+.... ..+.+.... +.++..+.+.+++++++. ....|+++.|
T Consensus 107 dl~~~~i~~~~g~~~~-~~l~~~~~~-~~~~~~~~~~~~~~~~l~-------------------------~g~~d~~i~~ 159 (225)
T PF00497_consen 107 DLKGKRIGVVRGSSYA-DYLKQQYPS-NINIVEVDSPEEALEALL-------------------------SGRIDAFIVD 159 (225)
T ss_dssp GGTTSEEEEETTSHHH-HHHHHHTHH-TSEEEEESSHHHHHHHHH-------------------------TTSSSEEEEE
T ss_pred hhcCcccccccchhHH-HHhhhhccc-hhhhcccccHHHHHHHHh-------------------------cCCeeeeecc
Confidence 3567788888886633 455554433 578888999999999997 7889999997
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 160 ~ 160 (225)
T PF00497_consen 160 E 160 (225)
T ss_dssp H
T ss_pred c
Confidence 4
No 342
>PRK04457 spermidine synthase; Provisional
Probab=45.04 E-value=1.9e+02 Score=24.41 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=42.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcC--CeEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLG--AGVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g--~~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
...+|..||-++......++.+...+ .++.+ ..|+.+.+... ...||+|++
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--------------------------~~~yD~I~~ 142 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--------------------------RHSTDVILV 142 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--------------------------CCCCCEEEE
Confidence 35688999999988888888775432 24433 34555444321 357999999
Q ss_pred ecCCCC-----CCHHHHHHHHHH
Q 026988 140 DCQMGS-----MDGCKATRVIRR 157 (230)
Q Consensus 140 D~~mp~-----~dg~~l~~~lr~ 157 (230)
|..-+. ....++++.+++
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHH
Confidence 973221 223466666654
No 343
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=45.02 E-value=2e+02 Score=24.57 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=55.7
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM 146 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~ 146 (230)
++-+.-.-.....+...|...|..+....|....+..+. .-.++-|++=+...+.
T Consensus 135 ~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~-------------------------~~~~~Dv~i~iS~sG~ 189 (281)
T COG1737 135 FFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLA-------------------------LLTPGDVVIAISFSGY 189 (281)
T ss_pred EEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHH-------------------------hCCCCCEEEEEeCCCC
Confidence 334557777888899999999999999988887774443 3345544444555443
Q ss_pred --CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH
Q 026988 147 --DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182 (230)
Q Consensus 147 --dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~ 182 (230)
+-.++++..++ ...|||.+|........
T Consensus 190 t~e~i~~a~~ak~--------~ga~vIaiT~~~~spla 219 (281)
T COG1737 190 TREIVEAAELAKE--------RGAKVIAITDSADSPLA 219 (281)
T ss_pred cHHHHHHHHHHHH--------CCCcEEEEcCCCCCchh
Confidence 34556666654 45899999998555443
No 344
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=44.95 E-value=1.6e+02 Score=25.34 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=44.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccC-CCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHN-SPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~D 140 (230)
..||++||.||.....-+.+|....- ...+-.|..+--..|..- .-..+.. ..+..++++.
T Consensus 95 ~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p----------------~~~~~lD~~rPVavll~~ 158 (267)
T PF04672_consen 95 DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHP----------------EVRGLLDFDRPVAVLLVA 158 (267)
T ss_dssp T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSH----------------HHHCC--TTS--EEEECT
T ss_pred CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCH----------------HHHhcCCCCCCeeeeeee
Confidence 46999999999999999999987643 444555655555544310 0011112 3455666666
Q ss_pred c--CCCC-CCHHHHHHHHHH
Q 026988 141 C--QMGS-MDGCKATRVIRR 157 (230)
Q Consensus 141 ~--~mp~-~dg~~l~~~lr~ 157 (230)
+ .+++ .+..++++.++.
T Consensus 159 vLh~v~D~~dp~~iv~~l~d 178 (267)
T PF04672_consen 159 VLHFVPDDDDPAGIVARLRD 178 (267)
T ss_dssp -GGGS-CGCTHHHHHHHHHC
T ss_pred eeccCCCccCHHHHHHHHHH
Confidence 6 4465 677888888886
No 345
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=44.81 E-value=1.8e+02 Score=24.02 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=41.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-... +.-|..+++-+- ..+|+|+... .. .......|..+++..+-+.+++.+++..++..
T Consensus 264 adi~i~ps~~-e~~~~~~~Ea~~---------~G~Pvi~s~~-~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 264 ADVFVLPSYR-EGLPRVLLEAMA---------MGRPVIATDV-PG---CREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred ccEEEecCcc-cCcchHHHHHHH---------cCCCEEEecC-CC---chhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 5666654332 233455555443 3478876432 22 22334456788999999999999999987765
Q ss_pred cc
Q 026988 214 KS 215 (230)
Q Consensus 214 ~~ 215 (230)
..
T Consensus 330 ~~ 331 (359)
T cd03808 330 PE 331 (359)
T ss_pred HH
Confidence 43
No 346
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=44.73 E-value=1.2e+02 Score=28.24 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....|++++|..-.. .+-++.+++|++ ..+++||++ -.-.+.+....+.++|++.+-
T Consensus 238 ~agvdvivvD~a~g~~~~vl~~i~~i~~------~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 238 EAGVDVLVVDTAHGHSEGVLDRVREIKA------KYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HhCCCEEEEECCCCcchhHHHHHHHHHh------hCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 446889999986443 334667777775 234577776 444567788899999999663
No 347
>PLN02823 spermine synthase
Probab=44.17 E-value=64 Score=28.57 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=14.2
Q ss_pred cEEEEEeccHHHHHHHHHHHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLK 85 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~ 85 (230)
.+|.+||=|+...+..++.+.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~ 148 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLT 148 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcc
Confidence 367777777777776666664
No 348
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=44.17 E-value=1.1e+02 Score=30.61 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=49.0
Q ss_pred CCCccEEEEe-cCCCCCCHHH-HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 026988 131 SPHYDLILMD-CQMGSMDGCK-ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 131 ~~~~dlvl~D-~~mp~~dg~~-l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
...+.++|+| .+|-...++. |++.|.+ ...++.+|++|.. .+.+...+..-+.-|-.++++.++|...|.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEE------pP~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~ 189 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEE------PPEHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLE 189 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhC------CCCCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHH
Confidence 3467888888 4444444554 3444442 2245666777643 333555556556778888899999999998
Q ss_pred HHHHhcc
Q 026988 209 ETIARKS 215 (230)
Q Consensus 209 ~~l~~~~ 215 (230)
+.+....
T Consensus 190 ~il~~EG 196 (824)
T PRK07764 190 RICAQEG 196 (824)
T ss_pred HHHHHcC
Confidence 8876544
No 349
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=44.08 E-value=32 Score=27.17 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=27.0
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
|||+|.-......+.+.|++.|+++........
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~ 33 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEI 33 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCC
Confidence 588888888888899999999998887766544
No 350
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=43.98 E-value=1.2e+02 Score=21.80 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred cEEEEEe--ccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH-HHHHHHhcccccchhccccCCcccccCCCCc-c-EEEE
Q 026988 65 LSVLLVE--DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA-MTLMINAAGKNHQIQNLHHGSNLETHNSPHY-D-LILM 139 (230)
Q Consensus 65 ~~iLiVd--d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d-lvl~ 139 (230)
.+|+++. ..-.....+...|.+.|..+....+..+.... +. ...+ | +|++
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~d~vi~i 60 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLE-------------------------NLDPDDLVIII 60 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGG-------------------------GCSTTEEEEEE
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcc-------------------------cccccceeEee
Confidence 3666665 45556667777787777777777666663332 21 1123 3 3334
Q ss_pred ecCCCCCC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHH
Q 026988 140 DCQMGSMD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH 201 (230)
Q Consensus 140 D~~mp~~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~ 201 (230)
. .++.+ -.+.++.+++ ...++|++|+......... +|..|.-|...+
T Consensus 61 s--~sg~~~~~~~~~~~ak~--------~g~~vi~iT~~~~~~l~~~-----ad~~l~~~~~~~ 109 (131)
T PF01380_consen 61 S--YSGETRELIELLRFAKE--------RGAPVILITSNSESPLARL-----ADIVLYIPTGEE 109 (131)
T ss_dssp E--SSSTTHHHHHHHHHHHH--------TTSEEEEEESSTTSHHHHH-----SSEEEEEESSCG
T ss_pred e--ccccchhhhhhhHHHHh--------cCCeEEEEeCCCCCchhhh-----CCEEEEecCCCc
Confidence 3 44433 3445555543 4589999998776655433 355555554443
No 351
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=43.95 E-value=2.4e+02 Score=25.37 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=42.2
Q ss_pred CCccEEEEecCCCCC----CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSM----DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~----dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
..+|+|++..--.-. ..++.++.+++ .++..+ |++++..-...-.........+++.-+-....+.+.+
T Consensus 32 ~~aD~v~intctv~~~a~~~~~~~i~~~k~------~~p~~~-vvvgGc~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll 104 (414)
T TIGR01579 32 DKADVYIINTCTVTAKADSKARRAIRRARR------QNPTAK-IIVTGCYAQSNPKELADLKDVDLVLGNKEKDKINKLL 104 (414)
T ss_pred ccCCEEEEeccccchHHHHHHHHHHHHHHh------hCCCcE-EEEECCccccCHHHHhcCCCCcEEECCCCHHHHHHHH
Confidence 358999998654332 25666776664 233444 5555544333334445555556888877777777666
Q ss_pred HHH
Q 026988 208 VET 210 (230)
Q Consensus 208 ~~~ 210 (230)
...
T Consensus 105 ~~~ 107 (414)
T TIGR01579 105 SLG 107 (414)
T ss_pred HHH
Confidence 543
No 352
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=43.93 E-value=1.7e+02 Score=26.90 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=39.2
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 131 SPHYDLILMDCQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
...+|+|.+|..-.. ....+.+++||+ ..+++||++ ..-.+.+....+.++|++.+
T Consensus 234 ~aG~d~I~vd~a~g~~~~~~~~i~~i~~------~~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 234 KAGVDVIVIDSSHGHSIYVIDSIKEIKK------TYPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred HhCCCEEEEECCCCcHhHHHHHHHHHHH------hCCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 345899999986543 345667777775 234677776 33456778888999999976
No 353
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=43.62 E-value=63 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=41.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEc-------CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK-------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~-------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
|+|||.+.+-.+-..|.+.|. .++++...+ |.+...+.++ ..+||+|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~-------------------------~~~PDvV 54 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIR-------------------------ETRPDVV 54 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHH-------------------------hhCCCEE
Confidence 469999999999999999988 456666543 4444555554 5679999
Q ss_pred EEecCCCCCCH
Q 026988 138 LMDCQMGSMDG 148 (230)
Q Consensus 138 l~D~~mp~~dg 148 (230)
|--.-+..-|.
T Consensus 55 In~AAyt~vD~ 65 (281)
T COG1091 55 INAAAYTAVDK 65 (281)
T ss_pred EECcccccccc
Confidence 97666655443
No 354
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=43.51 E-value=1.9e+02 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.615 Sum_probs=9.9
Q ss_pred ChHhHHHHHHcCCCeeEeCC
Q 026988 178 TADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 178 ~~~~~~~~~~~G~~~~L~KP 197 (230)
+.+...++..+|++ |+.-|
T Consensus 74 ~~~q~~~a~~aGa~-fiVsP 92 (211)
T COG0800 74 NPEQARQAIAAGAQ-FIVSP 92 (211)
T ss_pred CHHHHHHHHHcCCC-EEECC
Confidence 34455555556655 44444
No 355
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=43.36 E-value=1.8e+02 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=16.7
Q ss_pred CCCccEEEEecCCCCCC-----HHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMD-----GCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-----g~~l~~~lr~ 157 (230)
...||+|++|..-|... ..++++.+++
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKK 174 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHH
Confidence 45799999998655322 2345555543
No 356
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.21 E-value=97 Score=25.28 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=38.8
Q ss_pred EEEEecCCCCC---CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 136 LILMDCQMGSM---DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 136 lvl~D~~mp~~---dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+++.|+..-+. ..+++++.+++ ...+||+.-.+-.+.++...+++.|+++++.
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~-------~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAA-------ATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHH-------hcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 56677654322 23677777774 2358999999888889999999999998764
No 357
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=43.16 E-value=66 Score=27.41 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLL 203 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L 203 (230)
.+++++.+|+ ....+|++++|-.+. +.....+.++|++++|.--+..++-
T Consensus 74 ~~~~~~~ir~------~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~ 129 (259)
T PF00290_consen 74 IFELVKEIRK------KEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEES 129 (259)
T ss_dssp HHHHHHHHHH------HCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGH
T ss_pred HHHHHHHHhc------cCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHH
Confidence 3556666663 356799999998543 3456778899999999986666543
No 358
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.99 E-value=66 Score=27.76 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=35.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
...+.+|+|++.+...-+-+..+|...|..|.++.+-...+.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~ 190 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK 190 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH
Confidence 467889999999999999999999999999998877655443
No 359
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.95 E-value=1.2e+02 Score=25.88 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=43.9
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
...+.+.+++.+.+. ..+|.|.+|-.-| +-++.+.+.. ...+++|
T Consensus 185 ~vev~t~eea~~A~~--------------------------~gaD~I~ld~~~~-----e~l~~~v~~i---~~~~~i~- 229 (269)
T cd01568 185 EVEVETLEEAEEALE--------------------------AGADIIMLDNMSP-----EELKEAVKLL---KGLPRVL- 229 (269)
T ss_pred EEecCCHHHHHHHHH--------------------------cCCCEEEECCCCH-----HHHHHHHHHh---ccCCCeE-
Confidence 346678888887764 3589999987544 2223222210 0113455
Q ss_pred EEEecCCChHhHHHHHHcCCCeeE
Q 026988 171 IAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
|..++.-+.+.+....+.|++.+-
T Consensus 230 i~asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 230 LEASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 455666788999999999999664
No 360
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=42.95 E-value=1e+02 Score=26.22 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 76 LQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
.-..+.+.|++.|+++..+....+.+..+.
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~ 53 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLK 53 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhc
Confidence 446788889999999988876666666554
No 361
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=42.94 E-value=1.2e+02 Score=25.74 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=36.3
Q ss_pred ccEEEEecC---------CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh---HhHHHHHHcCCCeeEeCCCCHH
Q 026988 134 YDLILMDCQ---------MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA---DNERECFNSGMDTFLNKPAQEH 201 (230)
Q Consensus 134 ~dlvl~D~~---------mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~---~~~~~~~~~G~~~~L~KP~~~~ 201 (230)
++++++|+. .|+ ..++++.+++ ..++++++|++... .........|++.--.+++++.
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~g--a~e~l~~L~~--------~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~ 71 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPG--APELLDRLAR--------AGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA 71 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcC--HHHHHHHHHH--------CCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH
Confidence 567777774 222 4677777774 35799999986532 3344566788764444455544
Q ss_pred H
Q 026988 202 L 202 (230)
Q Consensus 202 ~ 202 (230)
.
T Consensus 72 ~ 72 (279)
T TIGR01452 72 L 72 (279)
T ss_pred H
Confidence 4
No 362
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=42.76 E-value=1.7e+02 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
..+|+|+.......+ ....+-.+++..+-+.+++.+.|..++...
T Consensus 322 ~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 322 AGKPVLASVDGESAE----LVEEAGAGLVVPPGDPEALAAAILELLDDP 366 (394)
T ss_pred CCCcEEEecCCCchh----hhccCCcceEeCCCCHHHHHHHHHHHHhCh
Confidence 347777654433222 233345678899889999999999988543
No 363
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=42.69 E-value=2.2e+02 Score=24.41 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=39.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHh
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~ 110 (230)
..+.++||-+-..=+-..+.+.|.+.||++..+.--++-++.+...+++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4566899999998899999999999999988887778877777765543
No 364
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=42.44 E-value=1.3e+02 Score=24.91 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=50.2
Q ss_pred CCccEEEEecCCC------CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCH
Q 026988 132 PHYDLILMDCQMG------SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQE 200 (230)
Q Consensus 132 ~~~dlvl~D~~mp------~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~ 200 (230)
..+|.|.+.--.+ .--|.++++++.+ ...+||+.+-+- +.++...+.++|++++ +.+.-++
T Consensus 130 ~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~-------~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~~dp 201 (221)
T PRK06512 130 LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAE-------MIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDAHDP 201 (221)
T ss_pred cCCCEEEECCCCCCCCCCCCCCChHHHHHHHH-------hCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCH
Confidence 4567776654331 1237788877764 245999999875 6778889999999977 4555566
Q ss_pred HHHHHHHHHHHHhc
Q 026988 201 HLLAAAIVETIARK 214 (230)
Q Consensus 201 ~~L~~~l~~~l~~~ 214 (230)
.+-...+...+...
T Consensus 202 ~~a~~~~~~~~~~~ 215 (221)
T PRK06512 202 PLAVAQANALLDEK 215 (221)
T ss_pred HHHHHHHHHHHhhc
Confidence 66556666666543
No 365
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.36 E-value=1.9e+02 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=20.2
Q ss_pred CCccEEEEecCCCC---C-----C----HHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 132 PHYDLILMDCQMGS---M-----D----GCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 132 ~~~dlvl~D~~mp~---~-----d----g~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
...-+|++|..+++ . | |..+++.+.+ . .+-.|+++++.
T Consensus 82 ~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~------~-g~~~i~~i~~~ 131 (273)
T cd06292 82 RGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVA------L-GHRRIGFASGP 131 (273)
T ss_pred CCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHH------C-CCceEEEEeCC
Confidence 34557777765543 1 1 3445555542 2 35667777654
No 366
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=42.18 E-value=1.1e+02 Score=27.64 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=37.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe---EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG---VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+|.-||-++......++.+...|+. +. ...|..+.+..+.. ....||+|++|
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-----------------------~~~~fDlVilD 300 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-----------------------RGEKFDVIVMD 300 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-----------------------cCCCCCEEEEC
Confidence 37899999999999999988887763 33 33455544433321 13479999999
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
-
T Consensus 301 P 301 (396)
T PRK15128 301 P 301 (396)
T ss_pred C
Confidence 4
No 367
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=41.89 E-value=2.1e+02 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=19.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeE
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGV 91 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v 91 (230)
+.+|..+|-++......++.+...|.++
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~ 137 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTV 137 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEE
Confidence 4577888888888777777776666443
No 368
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=41.83 E-value=64 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.2
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
|++||....+...+.+.|++.|+.+.....
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~ 30 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPN 30 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeC
Confidence 589999999999999999999998877643
No 369
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.79 E-value=2.2e+02 Score=24.13 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=26.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~ 180 (230)
...||+|++-.. ..++..+++.+++ .+-..+++..++...+.
T Consensus 190 ~~~pd~v~~~~~--~~~~~~~~~~~~~------~G~~~~~~~~~~~~~~~ 231 (312)
T cd06346 190 AGGPDALVVIGY--PETGSGILRSAYE------QGLFDKFLLTDGMKSDS 231 (312)
T ss_pred hcCCCEEEEecc--cchHHHHHHHHHH------cCCCCceEeeccccChH
Confidence 567999987643 3377777777775 23356666655544443
No 370
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=41.75 E-value=2.1e+02 Score=24.06 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=36.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.|++++-... +.-|..+++-+. ..+|+|+.-.....+.. .- .+++..|.+.+++.+++..++.
T Consensus 263 ad~~v~~s~~-e~~~~~~~Ea~a---------~G~PvI~~~~~~~~e~i----~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 263 ADLFVLSSAW-EGFGLVVAEAMA---------CELPVVATDAGGVREVV----GD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred hceEEecccc-cCCChHHHHHHH---------cCCCEEEecCCChhhEe----cC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5666654332 223555655553 34677753221111111 11 5678889999999999999874
No 371
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=41.51 E-value=1e+02 Score=26.70 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=32.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe---E-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG---V-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~---v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+|+-||-+.......++.+.-.|+. + ....|.-+.+..++ ....||+||+|
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~------------------------~~~~fD~IIlD 202 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK------------------------KGGRFDLIILD 202 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH------------------------HTT-EEEEEE-
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh------------------------cCCCCCEEEEC
Confidence 37899999999999998888877753 2 23445544444433 14589999999
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
-
T Consensus 203 P 203 (286)
T PF10672_consen 203 P 203 (286)
T ss_dssp -
T ss_pred C
Confidence 5
No 372
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=41.45 E-value=2.3e+02 Score=27.87 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC-CCCCC-HHHHH
Q 026988 76 LQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ-MGSMD-GCKAT 152 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~-mp~~d-g~~l~ 152 (230)
....+.+..++.|.++. .+.|.+|+-..+. ..+++|=++-. +-... ..+..
T Consensus 148 ~l~~l~~~a~~lGme~LvEvh~~~el~~a~~--------------------------~ga~iiGINnRdL~tf~vd~~~t 201 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVETHTREEIERAIA--------------------------AGAKVIGINARNLKDLKVDVNKY 201 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh--------------------------CCCCEEEEeCCCCccceeCHHHH
Confidence 44566677778888755 6888888877764 23555533332 22111 24445
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+|...-| ....+|.-|+-.+.++...+.+.|+|++|.=
T Consensus 202 ~~L~~~ip-----~~~~~VsESGI~~~~d~~~l~~~G~davLIG 240 (695)
T PRK13802 202 NELAADLP-----DDVIKVAESGVFGAVEVEDYARAGADAVLVG 240 (695)
T ss_pred HHHHhhCC-----CCcEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 55553221 2355566688888999999999999999763
No 373
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=41.20 E-value=85 Score=31.83 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL-GAGVTLVKDGEAAVEA 103 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~ 103 (230)
+.-++||+||.-..+-..|.++|... |..+.++.+.+-.++.
T Consensus 79 ~~~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~ 121 (918)
T PLN02889 79 LEFVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEE 121 (918)
T ss_pred cccceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHH
Confidence 44579999999999999999999987 8888777665433333
No 374
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=41.09 E-value=51 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=23.9
Q ss_pred EEEecCCChHhHHHHHHcCCCeeEeCCC
Q 026988 171 IAFTALVTADNERECFNSGMDTFLNKPA 198 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~L~KP~ 198 (230)
++.|++.++..+.+++.-|+|+.+.--.
T Consensus 35 v~CsGrvn~~fvl~Al~~GaDGV~v~GC 62 (132)
T COG1908 35 VMCSGRVNPEFVLKALRKGADGVLVAGC 62 (132)
T ss_pred eeccCccCHHHHHHHHHcCCCeEEEecc
Confidence 4669999999999999999999887543
No 375
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=40.96 E-value=1.8e+02 Score=22.98 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCCccEEEEecCC-C----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQM-G----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~m-p----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
....|.+.+...- + ...+.+.++.+++. .++||++.-+- +.+....+.+.|++.+..
T Consensus 124 ~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 124 KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-------LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-------cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 3457887774211 1 23455666666531 35777766654 588999999999997743
No 376
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=40.95 E-value=2.2e+02 Score=24.03 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=36.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
.+|.|.+|-.-|+ ++-.....++.+..-+....+-.+|++|+.-+.+.+......|+|-|
T Consensus 205 ~~d~irlDs~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Sggi~~~~i~~~~~~gvd~~ 264 (281)
T cd00516 205 GADGIRLDSGSPE-ELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVF 264 (281)
T ss_pred CCCEEEeCCCChH-HHHHHHHHHHHHHhhhhcCCCceEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 4999999976552 22233333332111112233345778888888888988888987754
No 377
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=40.95 E-value=76 Score=24.55 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=27.6
Q ss_pred CCcEEEEEeccHHH---------HHHHHHHHHhcC-CeEEEEcCcHHHHHHHH
Q 026988 63 EGLSVLLVEDQAVL---------QRIGIRMLKKLG-AGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 63 ~~~~iLiVdd~~~~---------~~~l~~~L~~~g-~~v~~~~~~~~al~~l~ 105 (230)
..++|.|||.|... -+.+.+.|+... +.+.. .+.++|.+.+.
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~ 93 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLA 93 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhH
Confidence 46788999877654 355556665543 44443 47888888887
No 378
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=40.84 E-value=1.5e+02 Score=26.00 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=61.9
Q ss_pred cEEEEE-eccHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLV-EDQAVLQRIGIRMLKK--LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiV-dd~~~~~~~l~~~L~~--~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.++.. ||-..+|..++..++. .|+..+..... .....|.+..-+. +....... ....-...|.+|++|+
T Consensus 61 ~~~~~~~D~m~~~R~~~k~~~k~~~lGh~~vl~~~~-~~y~~L~EW~v~~-----~~~v~~l~-~~~~~~~~~kvIvFDL 133 (301)
T TIGR01684 61 LQVFSCADDMVDLRAHLKTAFKTSYFGHTFVLFHKP-AMYACLNEWYVFE-----LEEIYNLN-LPSKVFEPPHVVVFDL 133 (301)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcccccceEEEecCCc-cHHHHHHHHHccc-----Hhhhhhcc-ccccccccceEEEEec
Confidence 345544 5556777778777764 46554444332 2333343331100 00000000 0122245688999998
Q ss_pred CCC---C--------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 142 QMG---S--------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 142 ~mp---~--------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.=. + -.-.++++.+++ ..+++.+.|+.............|.+.|+
T Consensus 134 DgTLi~~~~~v~irdPgV~EaL~~Lke--------kGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 134 DSTLITDEEPVRIRDPRIYDSLTELKK--------RGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred CCCCcCCCCccccCCHHHHHHHHHHHH--------CCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 421 1 123466677764 35788899887766666666778888765
No 379
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.80 E-value=2.6e+02 Score=24.72 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=57.4
Q ss_pred eccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHH
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCK 150 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~ 150 (230)
+-.......|.+..++.|..+.+..-..+.++.+. . +++-++-+.-.+++-+.
T Consensus 73 el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~-------------------------~--~~v~~~KI~S~~~~n~~ 125 (327)
T TIGR03586 73 HTPWEWHKELFERAKELGLTIFSSPFDETAVDFLE-------------------------S--LDVPAYKIASFEITDLP 125 (327)
T ss_pred hCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHH-------------------------H--cCCCEEEECCccccCHH
Confidence 44555666788889999998887777777778775 2 23335555556677788
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHH
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~ 186 (230)
|++.+.+ ...|||+-|+..+.+.+..+.
T Consensus 126 LL~~va~--------~gkPvilstG~~t~~Ei~~Av 153 (327)
T TIGR03586 126 LIRYVAK--------TGKPIIMSTGIATLEEIQEAV 153 (327)
T ss_pred HHHHHHh--------cCCcEEEECCCCCHHHHHHHH
Confidence 8888864 357999999988776655543
No 380
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.48 E-value=66 Score=28.01 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=32.3
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
...+.+|.+|......-.-+..+|.+.|+.|.++++
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~ 190 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHS 190 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence 467889999999999999999999999999999963
No 381
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.20 E-value=2.1e+02 Score=24.05 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=39.8
Q ss_pred cEEEEecCCCC-CC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHH-HcCCCeeEe
Q 026988 135 DLILMDCQMGS-MD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECF-NSGMDTFLN 195 (230)
Q Consensus 135 dlvl~D~~mp~-~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~-~~G~~~~L~ 195 (230)
.+++.|+.--+ +. -+++++.+++ ...+|||.--+-.+.++...++ ..|+++.+.
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~-------~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRN-------ALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHh-------hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 47888776433 23 3667777764 2568999999999999999998 799997643
No 382
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=40.12 E-value=76 Score=28.72 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
+.+|++||-.- ..-+.+.|.+.|+.+.++.+...
T Consensus 192 ~~~I~viD~g~--k~ni~~~L~~~G~~v~vvp~~~~ 225 (382)
T CHL00197 192 QLKIIVIDFGV--KYNILRRLKSFGCSITVVPATSP 225 (382)
T ss_pred CCEEEEEECCc--HHHHHHHHHHCCCeEEEEcCCCC
Confidence 57999999953 34588888889999988865433
No 383
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=39.87 E-value=2.7e+02 Score=24.61 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=39.6
Q ss_pred ccEEEEecCCCCC-CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 134 YDLILMDCQMGSM-DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 134 ~dlvl~D~~mp~~-dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.|+|++|..-... .-++.+++||+.. +.|.|+.-.-...+....+.++|++.+..-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~-------p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL-------PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC-------CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 7999999866543 3466777777521 245555554667888999999999988644
No 384
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=39.84 E-value=2.6e+02 Score=24.48 Aligned_cols=83 Identities=20% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe-cCCC-----CC-CHHHH
Q 026988 80 GIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD-CQMG-----SM-DGCKA 151 (230)
Q Consensus 80 l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D-~~mp-----~~-dg~~l 151 (230)
+.+.++..|..+. .+.+.++|...++ ..+|.|++- ..-. +. +-+.|
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~--------------------------~G~D~iv~qG~eAGGH~g~~~~~~~~L 181 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAK--------------------------AGADAIVAQGPEAGGHRGFEVGSTFSL 181 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHH--------------------------TT-SEEEEE-TTSSEE---SSG-HHHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhh--------------------------cCCCEEEEeccccCCCCCccccceeeH
Confidence 4456777787654 6788888877664 348887765 2221 11 24666
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+..+++. ..+|||.--+-.+......++..|+++...
T Consensus 182 ~~~v~~~-------~~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 182 LPQVRDA-------VDIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHH--------SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred HHHHhhh-------cCCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 7777642 348999998888999999999999998754
No 385
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=39.74 E-value=45 Score=21.18 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChH
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~ 180 (230)
..+|.++++.+.+. ........|||+-|......
T Consensus 3 ~~sGv~vlRel~r~--~~~~~~~~PVVFTS~Lg~~~ 36 (58)
T PF08415_consen 3 SFSGVEVLRELARR--GGGRAAVMPVVFTSMLGVDD 36 (58)
T ss_pred cccHHHHHHHHHHh--cCCCCCcCCEEEeCCCCCCc
Confidence 35799999999875 12355678999988766543
No 386
>PLN02591 tryptophan synthase
Probab=39.69 E-value=2.3e+02 Score=23.92 Aligned_cols=100 Identities=7% Similarity=0.040 Sum_probs=60.8
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEE--cCc-HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE-e-
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLV--KDG-EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM-D- 140 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~--~~~-~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~-D- 140 (230)
-+++.|-..+....+...+++.|.....+ .+. ++=+..+.. .....|-+ -
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~-------------------------~~~gFIY~Vs~ 163 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE-------------------------ASEGFVYLVSS 163 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-------------------------hCCCcEEEeeC
Confidence 46777777677777888888888764433 333 222333331 12222221 1
Q ss_pred cCCCC------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 141 CQMGS------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 141 ~~mp~------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
..-.+ .+-.+.++++|+ ..++||++=.+-.+.++..+..+.|+|+.+.-.
T Consensus 164 ~GvTG~~~~~~~~~~~~i~~vk~-------~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 164 TGVTGARASVSGRVESLLQELKE-------VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCcCCCcCCchhHHHHHHHHHh-------cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 11111 112445666664 356899987787788999999999999998863
No 387
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.68 E-value=1.2e+02 Score=26.33 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=34.0
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
.+.+.+|+||+.....-+-+..+|...|..|+++.+-..
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~ 193 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK 193 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence 477889999999998889999999999999998887543
No 388
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=39.48 E-value=2e+02 Score=22.98 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=43.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe--EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG--VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+|..||.++.....+++.++..++. +. ...|..+++..+.. ....+|+|++|-
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-----------------------~~~~~dvv~~DP 129 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-----------------------KPTFDNVIYLDP 129 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------------------cCCCceEEEECc
Confidence 37999999999999999999888763 33 33344344332210 022489999997
Q ss_pred CCCCCCHHHHHHHHH
Q 026988 142 QMGSMDGCKATRVIR 156 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr 156 (230)
-.....-.+++..+.
T Consensus 130 Py~~~~~~~~l~~l~ 144 (189)
T TIGR00095 130 PFFNGALQALLELCE 144 (189)
T ss_pred CCCCCcHHHHHHHHH
Confidence 665433444555554
No 389
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=39.32 E-value=43 Score=22.86 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=27.5
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
-++|++.|-....+..++...||++...+-+
T Consensus 7 si~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~ 37 (76)
T PRK11152 7 TIKARFRPEVLERVLRVVRHRGFQVCSMNMT 37 (76)
T ss_pred EEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence 4689999999999999999999998877655
No 390
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=39.28 E-value=2.1e+02 Score=23.53 Aligned_cols=56 Identities=23% Similarity=0.365 Sum_probs=41.1
Q ss_pred CccEEEEecCCCC-CCH--HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 133 HYDLILMDCQMGS-MDG--CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 133 ~~dlvl~D~~mp~-~dg--~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
--.++++|+.--+ +.| +++++.+++. ..+|+|.--+-.+.++...+.+.|+++.+.
T Consensus 161 ~~~ii~tdi~~dGt~~G~d~~~~~~l~~~-------~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 161 AGEIILTDIDRDGTMQGPDLELLKQLAEA-------VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp -SEEEEEETTTTTTSSS--HHHHHHHHHH-------HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CcEEEEeeccccCCcCCCCHHHHHHHHHH-------cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3458999997654 444 5566777642 258999999988999999999999998875
No 391
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=39.23 E-value=2.1e+02 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
|..+++.+.+ . .+-.|.++++.
T Consensus 104 ~~~~~~~l~~------~-g~~~i~~i~~~ 125 (268)
T cd06273 104 GRLAARHLIA------L-GHRRIAMIFGP 125 (268)
T ss_pred HHHHHHHHHH------C-CCCeEEEEecc
Confidence 4445555543 2 23467777653
No 392
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=39.08 E-value=1.7e+02 Score=22.25 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=38.7
Q ss_pred CCCccEEEEecCCCCCCHH-------HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQMGSMDGC-------KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~-------~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....|.+.++...+...+. ..+..++ ....+||+...+-...+....+.+.|++.+.
T Consensus 134 ~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~ 197 (200)
T cd04722 134 EAGVDEVGLGNGGGGGGGRDAVPIADLLLILAK-------RGSKVPVIAGGGINDPEDAAEALALGADGVI 197 (200)
T ss_pred HcCCCEEEEcCCcCCCCCccCchhHHHHHHHHH-------hcCCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 3457888888777654321 2233332 2346899998888777888899999998765
No 393
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=39.06 E-value=2.8e+02 Score=25.93 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=37.6
Q ss_pred CCCccEEEEecCCCCC-CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQMGSM-DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~-dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....|+|.+|..-... ..++.+++||+. .+.++|++ -.-.+.+....+.++|++.+.
T Consensus 251 ~ag~d~i~id~a~G~s~~~~~~i~~ik~~------~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 251 EAGVDVLVVDSSQGNSIYQIDMIKKLKSN------YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HCCCCEEEEecCCCCchHHHHHHHHHHhh------CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 4468999999853222 236788888852 23456555 233456788889999999663
No 394
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.06 E-value=44 Score=26.85 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCCccEEEEecCCCCCC-------HHHHHHHHHHhhhhhhcCCCceEEEEecCC
Q 026988 131 SPHYDLILMDCQMGSMD-------GCKATRVIRRLEAEAETGQSIPIIAFTALV 177 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-------g~~l~~~lr~~~~~~~~~~~~pii~ls~~~ 177 (230)
.-++|++++|+..- ++ -..+++.||+ .++..||++++...
T Consensus 57 ~~~a~~~~ld~~~N-~~~~~~~~~~~~fv~~iR~------~hP~tPIllv~~~~ 103 (178)
T PF14606_consen 57 EIDADLIVLDCGPN-MSPEEFRERLDGFVKTIRE------AHPDTPILLVSPIP 103 (178)
T ss_dssp HS--SEEEEEESHH-CCTTTHHHHHHHHHHHHHT------T-SSS-EEEEE---
T ss_pred cCCCCEEEEEeecC-CCHHHHHHHHHHHHHHHHH------hCCCCCEEEEecCC
Confidence 34579999998532 22 2345667774 56789999999643
No 395
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=39.02 E-value=65 Score=22.76 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=37.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
..++..+|=++......+..+...+. ++.+ ..|..+....+. ...+|+|++|
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-------------------------~~~~D~Iv~n 77 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-------------------------DGKFDLIVTN 77 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------------------TT-EEEEEE-
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------------------CceeEEEEEC
Confidence 36899999999999999999988765 3443 344444332222 5689999999
Q ss_pred cCCC
Q 026988 141 CQMG 144 (230)
Q Consensus 141 ~~mp 144 (230)
.-..
T Consensus 78 pP~~ 81 (117)
T PF13659_consen 78 PPYG 81 (117)
T ss_dssp -STT
T ss_pred CCCc
Confidence 7654
No 396
>PRK03612 spermidine synthase; Provisional
Probab=38.94 E-value=1.6e+02 Score=27.66 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=17.3
Q ss_pred CCCccEEEEecCCCCCCH------HHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDG------CKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg------~~l~~~lr~ 157 (230)
...||+|++|..-|...+ -++.+.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~ 403 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKR 403 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHH
Confidence 457999999976654322 245656554
No 397
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=38.91 E-value=41 Score=23.00 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=27.5
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
-++|++.|-....+..++...||++...+-+
T Consensus 6 si~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 6 SLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 4689999999999999999999998877655
No 398
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.55 E-value=1.4e+02 Score=21.12 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=30.5
Q ss_pred ceEEEEecCC--ChHhHHHHHHcCCCeeEeCCC--CHHHHHHHHHHHHH
Q 026988 168 IPIIAFTALV--TADNERECFNSGMDTFLNKPA--QEHLLAAAIVETIA 212 (230)
Q Consensus 168 ~pii~ls~~~--~~~~~~~~~~~G~~~~L~KP~--~~~~L~~~l~~~l~ 212 (230)
+-+++++... ..+....+++.|.+=++-||+ +.+++.+.+...-+
T Consensus 63 ~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 63 VDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp ESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3344444333 345678899999999999997 77777766654443
No 399
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=38.24 E-value=1.3e+02 Score=24.68 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=34.2
Q ss_pred CCccEEEEecCC-------CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH--HHHHHcCCCe
Q 026988 132 PHYDLILMDCQM-------GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE--RECFNSGMDT 192 (230)
Q Consensus 132 ~~~dlvl~D~~m-------p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~--~~~~~~G~~~ 192 (230)
..++++++|+.= +--...++++++++ ...++.++|+....... ......|...
T Consensus 6 ~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~--------~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIA--------QGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred hcCCEEEEecccccccCCccCccHHHHHHHHHH--------CCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 458899999832 11234667888874 35789999886654322 4456677764
No 400
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=38.24 E-value=1e+02 Score=24.94 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCe-EE-EEcCcHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAG-VT-LVKDGEAAVE 102 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~-v~-~~~~~~~al~ 102 (230)
.+..+|.-+|-++...+.+++.+.+.|+. +. +..++-+++.
T Consensus 56 ~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 56 GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 45679999999999999999999999974 33 3445555544
No 401
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=38.23 E-value=1.3e+02 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=23.6
Q ss_pred cEEEEEeccHHHH-----HHHHHHHHhcCCeEEEEcC
Q 026988 65 LSVLLVEDQAVLQ-----RIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 65 ~~iLiVdd~~~~~-----~~l~~~L~~~g~~v~~~~~ 96 (230)
.|+|||-|..... ..+...|+..|+.+..+.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~ 60 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEG 60 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCC
Confidence 5889998876544 5678888888887776643
No 402
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.23 E-value=2.8e+02 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 165 GQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 165 ~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+..+|||+=.+-....++..++.+||+....
T Consensus 350 g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 350 GVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred CCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 3458999999999999999999999997754
No 403
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=38.18 E-value=3e+02 Score=24.79 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=42.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++--. .+.-|..+++-+- ..+|||+....... +....|.++|+..|-++++|.++|.+++..
T Consensus 341 ~Dv~v~pS~-~E~fg~~~lEAma---------~G~PvV~s~~gg~~----eiv~~~~~G~lv~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 341 RGIFVNPAL-TEPFGLTLLEAAA---------CGLPIVATDDGGPR----DIIANCRNGLLVDVLDLEAIASALEDALSD 406 (439)
T ss_pred CCEEecccc-cCCcccHHHHHHH---------hCCCEEEeCCCCcH----HHhcCCCcEEEeCCCCHHHHHHHHHHHHhC
Confidence 366554221 2333555665554 34788766543322 334567889999999999999999988864
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 407 ~ 407 (439)
T TIGR02472 407 S 407 (439)
T ss_pred H
Confidence 3
No 404
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=38.16 E-value=2.3e+02 Score=23.35 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+.||+++++.++++... .+.+.+ |+..+.-+.....++..+|++.+-.
T Consensus 137 g~dg~~~v~~~~~~~~~--~~~~tk-IlaAS~r~~~~v~~~~~~G~d~vTi 184 (213)
T TIGR00875 137 GGDGMKLIEEVKTIFEN--HAPDTE-VIAASVRHPRHVLEAALIGADIATM 184 (213)
T ss_pred CCCHHHHHHHHHHHHHH--cCCCCE-EEEeccCCHHHHHHHHHcCCCEEEc
Confidence 46899999988876432 344566 5555666788888889999995543
No 405
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=37.97 E-value=30 Score=27.86 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeEEEE--cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-C---CHHHH
Q 026988 78 RIGIRMLKKLGAGVTLV--KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-M---DGCKA 151 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-~---dg~~l 151 (230)
..+.+ |.+.|+.+..- ..+...+..+. .-.||.|-+|..+.. + ....+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~-------------------------~l~~~~ikld~~~~~~~~~~~~~~~ 191 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLA-------------------------SLPPDYIKLDGSLVRDLSDEEAQSL 191 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHH-------------------------HHCGSEEEEEHHGHTTTTSHHHHHH
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhh-------------------------hcccccceeecccccccchhhHHHH
Confidence 34444 77789877643 34444555554 346999999997652 2 23344
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD 191 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~ 191 (230)
++.+...- ....+ -++.++-.+.+....+.+.|++
T Consensus 192 l~~l~~~~----~~~~~-~via~gVe~~~~~~~l~~~G~~ 226 (236)
T PF00563_consen 192 LQSLINLA----KSLGI-KVIAEGVESEEQLELLKELGVD 226 (236)
T ss_dssp HHHHHHHH----HHTT--EEEEECE-SHHHHHHHHHTTES
T ss_pred HHHHHHHh----hcccc-ccceeecCCHHHHHHHHHcCCC
Confidence 55444321 11233 5556777888899999999998
No 406
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=37.97 E-value=1.8e+02 Score=25.49 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=46.0
Q ss_pred cCCCceEEEEecCCChHhHHHHHHcCCC------eeEeC-CCCHHHHHHHHHHHHHhccCcc
Q 026988 164 TGQSIPIIAFTALVTADNERECFNSGMD------TFLNK-PAQEHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 164 ~~~~~pii~ls~~~~~~~~~~~~~~G~~------~~L~K-P~~~~~L~~~l~~~l~~~~~~~ 218 (230)
....+|||-+.+-.+.++..+.+.+||+ .++.+ |.-..++.+.|.+.+..+....
T Consensus 238 ~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~s 299 (310)
T COG0167 238 LGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFES 299 (310)
T ss_pred cCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCCC
Confidence 3457999999999999999999999997 55777 8888999999999888765543
No 407
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.78 E-value=1e+02 Score=19.90 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=24.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~ 95 (230)
-.+.|+-|++....-+..+++..||.+....
T Consensus 26 ~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~ 56 (67)
T cd03421 26 GEIEVLVDNEVAKENVSRFAESRGYEVSVEE 56 (67)
T ss_pred CEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence 3556677778888899999999999985443
No 408
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=37.75 E-value=2.9e+02 Score=24.38 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCceEEEEecCCC--hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 166 QSIPIIAFTALVT--ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 166 ~~~pii~ls~~~~--~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+|+|+...... ........+.|+. ++ +-++++|...|..++..
T Consensus 301 ~g~PvI~~~~~pgqe~gn~~~i~~~g~g-~~--~~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 301 RGLPIILNGYIPGQEEGNVPYVVDNGFG-AF--SESPKEIARIVAEWFGD 347 (382)
T ss_pred cCCCEEEecCCCccchhhHHHHHhCCce-ee--cCCHHHHHHHHHHHHcC
Confidence 4589998763211 1222223345553 33 36889999999888764
No 409
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=37.68 E-value=2.2e+02 Score=22.99 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=41.5
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE--eCCCCHHHHHHHHHHH
Q 026988 137 ILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL--NKPAQEHLLAAAIVET 210 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L--~KP~~~~~L~~~l~~~ 210 (230)
-++|...--...++.++.+++. ..+||++...-.+......+.++|++..+ ..-+..+.+...+...
T Consensus 49 ~v~~~~~~~~g~~~~~~~i~~~-------v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 49 SVLTEPKYFQGSLEDLRAVREA-------VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEeCccccCCCHHHHHHHHHh-------cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 3444433333456777777752 36899986555566678899999999886 2223345555554444
No 410
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.67 E-value=4.3e+02 Score=26.42 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=73.6
Q ss_pred cEEE-EEeccHHHHHHHHHHHH-hcCCeEEEEcCcH-HHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVL-LVEDQAVLQRIGIRMLK-KLGAGVTLVKDGE-AAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iL-iVdd~~~~~~~l~~~L~-~~g~~v~~~~~~~-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+|| +.+.--.-...|...+. +.||.|...+-.+ -+...++..+.++-..... +.+...|.|+++|-
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~----------l~adsrP~CLViDE 395 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSV----------LDADSRPVCLVIDE 395 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccc----------cccCCCcceEEEec
Confidence 3555 44544444445555553 4699988764332 2445555555443211111 11346799999984
Q ss_pred CCCCCCH-----HHHHH-HHHHhhhhhh---------------cCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCH
Q 026988 142 QMGSMDG-----CKATR-VIRRLEAEAE---------------TGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE 200 (230)
Q Consensus 142 ~mp~~dg-----~~l~~-~lr~~~~~~~---------------~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~ 200 (230)
.|| .+++. .++.-..... ..-.-|||.+...--.......... |.-...+|-..
T Consensus 396 ----IDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~-A~ii~f~~p~~ 470 (877)
T KOG1969|consen 396 ----IDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPF-AEIIAFVPPSQ 470 (877)
T ss_pred ----ccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccc-eEEEEecCCCh
Confidence 344 22222 2221111100 0124599999875544444333333 34455667788
Q ss_pred HHHHHHHHHHHHhccCc
Q 026988 201 HLLAAAIVETIARKSHK 217 (230)
Q Consensus 201 ~~L~~~l~~~l~~~~~~ 217 (230)
..|..+|+.+..+.+-+
T Consensus 471 s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMR 487 (877)
T ss_pred hHHHHHHHHHHhhhcCC
Confidence 88999999988776555
No 411
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.61 E-value=1.4e+02 Score=24.30 Aligned_cols=11 Identities=18% Similarity=-0.191 Sum_probs=7.2
Q ss_pred CceEEEEecCC
Q 026988 167 SIPIIAFTALV 177 (230)
Q Consensus 167 ~~pii~ls~~~ 177 (230)
.-.|.++++..
T Consensus 117 ~~~i~~i~~~~ 127 (270)
T cd06296 117 HRRIGFITGPP 127 (270)
T ss_pred CCcEEEEcCCC
Confidence 35788887654
No 412
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=37.48 E-value=2.2e+02 Score=24.77 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCcEEEEEeccHHHH-HHHHHHHHhcCCeEEEEcCcHHHH
Q 026988 62 LEGLSVLLVEDQAVLQ-RIGIRMLKKLGAGVTLVKDGEAAV 101 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al 101 (230)
.++.+|+++|..|... +.+.+.|.+.|..+....|..-+.
T Consensus 139 ~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~ 179 (301)
T TIGR00511 139 GKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRY 179 (301)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHH
Confidence 3457899999888765 456888888999999887764443
No 413
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=37.40 E-value=2e+02 Score=22.42 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC--------------cHHHHHHHHHHHHhcccccchhccccCCccc
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD--------------GEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~--------------~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (230)
.+++|+||+...-...+.+.+.|+...+.+....- -......+. +
T Consensus 31 ~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~---~------------------ 89 (148)
T PF07652_consen 31 KRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLL---N------------------ 89 (148)
T ss_dssp HTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHH---T------------------
T ss_pred HccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhc---C------------------
Confidence 46789999999999999999999877644332111 011111111 0
Q ss_pred ccCCCCccEEEEecC-CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCC
Q 026988 128 THNSPHYDLILMDCQ-MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177 (230)
Q Consensus 128 ~~~~~~~dlvl~D~~-mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~ 177 (230)
-.....||+||||-- .-|-..+.+...++.+. ......+|++|+-.
T Consensus 90 p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~----~~g~~~~i~mTATP 136 (148)
T PF07652_consen 90 PCRLKNYDVIIMDECHFTDPTSIAARGYLRELA----ESGEAKVIFMTATP 136 (148)
T ss_dssp SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHH----HTTS-EEEEEESS-
T ss_pred cccccCccEEEEeccccCCHHHHhhheeHHHhh----hccCeeEEEEeCCC
Confidence 001346999999953 33333455556666532 23346788888743
No 414
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=37.39 E-value=3e+02 Score=24.59 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=30.3
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+|||.... . ...+....|.++++.. +.++|.++|..++..
T Consensus 340 ~G~PVI~s~~-~---~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 CGLPVCALDF-K---CIDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred cCCCEEEeCC-C---CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 4578887433 2 2334566778888884 899999999998886
No 415
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.37 E-value=1.1e+02 Score=20.15 Aligned_cols=32 Identities=13% Similarity=-0.027 Sum_probs=26.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~ 95 (230)
|-.+.|+-|++....-+.++++..||.+....
T Consensus 26 G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 26 GEILEVISDCPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred CCEEEEEecCchHHHHHHHHHHHcCCEEEEEE
Confidence 44667788888888999999999999997654
No 416
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=37.24 E-value=2.6e+02 Score=23.83 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe------eEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT------FLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~------~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.+.++++ ...+|||..-+-.+.++..+++..|++. ++.+|.-...+.+.|.+.+......
T Consensus 224 ~~v~~i~~-------~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 224 RMVYDVYK-------MVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHHHh-------cCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 45555553 2358999999999999999999999985 5778876777888888777766543
No 417
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=37.05 E-value=1.4e+02 Score=24.30 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=45.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC--CCHHHHHHHHHHhhhhhhcC
Q 026988 88 GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS--MDGCKATRVIRRLEAEAETG 165 (230)
Q Consensus 88 g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~--~dg~~l~~~lr~~~~~~~~~ 165 (230)
++.|....+-+++.+++. ...|+|=+|...-. .+-.++++.||+ ..
T Consensus 45 ~~~V~ITPT~~ev~~l~~--------------------------aGadIIAlDaT~R~Rp~~l~~li~~i~~------~~ 92 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAE--------------------------AGADIIALDATDRPRPETLEELIREIKE------KY 92 (192)
T ss_dssp TSS--BS-SHHHHHHHHH--------------------------CT-SEEEEE-SSSS-SS-HHHHHHHHHH------CT
T ss_pred CCCeEECCCHHHHHHHHH--------------------------cCCCEEEEecCCCCCCcCHHHHHHHHHH------hC
Confidence 356777888888877774 45899999997622 667778888875 11
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCC
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMD 191 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~ 191 (230)
.+++..-.+.++...+.++|+|
T Consensus 93 ----~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 93 ----QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp ----SEEEEE-SSHHHHHHHHHTT-S
T ss_pred ----cEEeeecCCHHHHHHHHHcCCC
Confidence 6777777888999999999998
No 418
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.62 E-value=1.8e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=40.0
Q ss_pred cEEEEecCCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 135 DLILMDCQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 135 dlvl~D~~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+|++|+.--+ +.|++ .+.+ ...++|+|.--+-.+.++...+.+.|+++.+.
T Consensus 158 ~ii~t~i~~dGt~~G~d---~l~~------~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 158 RFIYTSIERDGTLTGIE---EIER------FWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEEeccchhcccCHH---HHHH------hcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 58999998765 46877 3332 11358999999999999999999999998765
No 419
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=36.49 E-value=1e+02 Score=21.29 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=42.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE-ecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM-DCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~-D~~ 142 (230)
.++..||-++......++.....+..+. ...|..+ +... ..++|+|++ ...
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~--------------------------~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD-LPFS--------------------------DGKFDLVVCSGLS 77 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHH--------------------------SSSEEEEEE-TTG
T ss_pred ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH-Cccc--------------------------CCCeeEEEEcCCc
Confidence 6899999999999999998877665443 4455544 2211 568999999 443
Q ss_pred CCCCCHHHHHHHHH
Q 026988 143 MGSMDGCKATRVIR 156 (230)
Q Consensus 143 mp~~dg~~l~~~lr 156 (230)
+...+--++.+.++
T Consensus 78 ~~~~~~~~~~~ll~ 91 (101)
T PF13649_consen 78 LHHLSPEELEALLR 91 (101)
T ss_dssp GGGSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 55555444444443
No 420
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.28 E-value=1.3e+02 Score=22.27 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCeEE
Q 026988 76 LQRIGIRMLKKLGAGVT 92 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~ 92 (230)
+...+.+.|++.|+++.
T Consensus 19 ~~~~l~~~l~~~G~~~~ 35 (135)
T smart00852 19 NGPALAELLTELGIEVT 35 (135)
T ss_pred cHHHHHHHHHHCCCeEE
Confidence 44678888899997543
No 421
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=36.21 E-value=3.2e+02 Score=24.55 Aligned_cols=81 Identities=9% Similarity=-0.006 Sum_probs=48.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.+|+.+|-++.....+++.++..+.. +.+. .+ ++...+... ...||+|.+|-
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~-~~-Da~~~l~~~-----------------------~~~fDvIdlDP-- 122 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVP-NE-DAANVLRYR-----------------------NRKFHVIDIDP-- 122 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-ch-hHHHHHHHh-----------------------CCCCCEEEeCC--
Confidence 47999999999999999999877653 3332 22 333444311 34699999997
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA 179 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~ 179 (230)
++.. ..++...-+ ...+--++.+|+.+..
T Consensus 123 fGs~-~~fld~al~------~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 123 FGTP-APFVDSAIQ------ASAERGLLLVTATDTS 151 (374)
T ss_pred CCCc-HHHHHHHHH------hcccCCEEEEEecccH
Confidence 3332 234433321 1122347777754443
No 422
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=35.97 E-value=73 Score=27.56 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
...+.++.||+-....-+=+..+|...++.|.+|.+-..-+..+
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~ 196 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASI 196 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 46788999999999999999999999999999998776444433
No 423
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=35.73 E-value=2.6e+02 Score=24.32 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCCcEEEEEeccHHHH-HHHHHHHHhcCCeEEEEcCcHHHH
Q 026988 62 LEGLSVLLVEDQAVLQ-RIGIRMLKKLGAGVTLVKDGEAAV 101 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al 101 (230)
.++.+|+++|..|... +.+.+.|.+.|..+....|..-+.
T Consensus 144 ~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~ 184 (310)
T PRK08535 144 GKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRY 184 (310)
T ss_pred CCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHH
Confidence 3457899999988764 456788888999999888865543
No 424
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=35.71 E-value=2.6e+02 Score=24.03 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccHHHH-HHHHHHHHhcCCeEEEEcCcHHHH
Q 026988 62 LEGLSVLLVEDQAVLQ-RIGIRMLKKLGAGVTLVKDGEAAV 101 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~al 101 (230)
.+..+|++.|..|... ..+.+.|.+.|..+....|..-+.
T Consensus 133 gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~ 173 (275)
T PRK08335 133 GKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGL 173 (275)
T ss_pred CCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHH
Confidence 3456899999888765 356888889999999888776544
No 425
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.67 E-value=1.5e+02 Score=25.30 Aligned_cols=60 Identities=12% Similarity=0.257 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee------EeCCCCHHHHHHHHHHHHHhcc
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF------LNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~------L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
++.+..+++ ...+|||...+-.+.++..+++..|++.+ +.-|.-..++.+-+.+.+..+.
T Consensus 220 ~~~i~~i~~-------~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 220 LRMVYQVYK-------AVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred HHHHHHHHH-------hcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcC
Confidence 456666664 13589999999889999999999999854 3456666667777777676554
No 426
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=35.60 E-value=4.2e+02 Score=25.69 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=71.4
Q ss_pred CCCcEEEEEeccHH-----HHHHHHHHHHhcCCeEEE---EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCC
Q 026988 62 LEGLSVLLVEDQAV-----LQRIGIRMLKKLGAGVTL---VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133 (230)
Q Consensus 62 ~~~~~iLiVdd~~~-----~~~~l~~~L~~~g~~v~~---~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (230)
.+..+|.++-=-+. -.....++|..-|+.+.. +.+.+++.+... ...
T Consensus 492 g~rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~-------------------------~sg 546 (619)
T TIGR00642 492 GERPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFK-------------------------KAG 546 (619)
T ss_pred CCCCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHH-------------------------hcC
Confidence 44556777653332 233456777777887653 244556666554 445
Q ss_pred ccEEEEecCCCC--CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGS--MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 134 ~dlvl~D~~mp~--~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
++++++...=.. ..+-++++.||. .+. ..|++.+.... ......+|+|+||.--.+.-+.+..+...+
T Consensus 547 a~i~viCssD~~Y~~~a~~~~~al~~------ag~--~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~~~ 616 (619)
T TIGR00642 547 AQVAVLCSSDKVYAQQGLEVAKALKA------AGA--KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLDIL 616 (619)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHHh------CCC--CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHHHh
Confidence 666666543222 245677888875 222 47888887654 334788999999998888777666665543
No 427
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=35.58 E-value=2.5e+02 Score=23.11 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=40.3
Q ss_pred CccEEEEecCCC-------CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 133 HYDLILMDCQMG-------SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 133 ~~dlvl~D~~mp-------~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
.+|-|.+---.| .-.|++.++++++ ...+|++.+-+ -+.+......+.|+++.
T Consensus 124 g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~-------~~~iP~vAIGG-i~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 124 GADYVGLGPIFPTSTKPDAPPLGLEGLREIRE-------LVNIPVVAIGG-INLENVPEVLEAGADGV 183 (211)
T ss_pred CCCEEEECCcCCCCCCCCCCccCHHHHHHHHH-------hCCCCEEEEcC-CCHHHHHHHHHhCCCeE
Confidence 388887766443 3468999998885 23489999977 56788899999999976
No 428
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.57 E-value=1.8e+02 Score=25.80 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCcEEEEEeccHHHHH-H-HHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 62 LEGLSVLLVEDQAVLQR-I-GIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~-~-l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
.+..+|++.|..|...- . ....|.+.|..+....|..-+. .+. ....|.||+
T Consensus 179 gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~-~M~-------------------------~~~Vd~Viv 232 (339)
T PRK06036 179 GKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGI-VMR-------------------------QGMVDKVIV 232 (339)
T ss_pred CCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHH-Hhc-------------------------cCCCCEEEE
Confidence 45678999999998763 3 4578888999999888754332 232 346899998
Q ss_pred ecCCCCCCHHHHHHHHHHhh-hhhhcCCCceEEEEecC
Q 026988 140 DCQMGSMDGCKATRVIRRLE-AEAETGQSIPIIAFTAL 176 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~-~~~~~~~~~pii~ls~~ 176 (230)
...---.|| ++.++-... .-......+|+++.++.
T Consensus 233 GAd~I~anG--v~NKiGT~~lA~~Ak~~~vPfyV~ap~ 268 (339)
T PRK06036 233 GADRITRDA--VFNKIGTYTHSVLAKEHEIPFYVAAPL 268 (339)
T ss_pred CccchhhcC--eehhhhHHHHHHHHHHhCCCEEEEeec
Confidence 665433344 333332111 00013456899988653
No 429
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.51 E-value=2.4e+02 Score=22.91 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALV 177 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~ 177 (230)
|..+++.+.+ .+ +-.|.++++..
T Consensus 104 g~~a~~~l~~------~G-~~~i~~l~~~~ 126 (269)
T cd06281 104 MRQAVEYLIS------LG-HRRIALVGGGS 126 (269)
T ss_pred HHHHHHHHHH------CC-CcEEEEecCcc
Confidence 3555555653 22 34677776643
No 430
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.34 E-value=78 Score=23.63 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCeEEEE
Q 026988 76 LQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~~~ 94 (230)
+...+.++|++.|+++...
T Consensus 20 n~~~l~~~l~~~G~~v~~~ 38 (133)
T cd00758 20 NGPALEALLEDLGCEVIYA 38 (133)
T ss_pred hHHHHHHHHHHCCCEEEEe
Confidence 4567888899999876543
No 431
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=35.13 E-value=68 Score=26.35 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=32.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 100 (230)
++|.|||=..-+...+.+.|++.|+++.+..|.++.
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 589999999999999999999999999999888663
No 432
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=35.08 E-value=3e+02 Score=25.62 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCCccEEEEecCCCC-----C--CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC---ee-----Ee
Q 026988 131 SPHYDLILMDCQMGS-----M--DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD---TF-----LN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~-----~--dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~---~~-----L~ 195 (230)
...+|.|.+---.|. . -|++.++++.. ..++||+.+-+- +.++..+.+..|++ ++ +.
T Consensus 408 ~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~-------~~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 408 KDGADYIGCGGVFPTNTKANNKTIGLDGLREVCE-------ASKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSALF 479 (502)
T ss_pred hcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHH-------cCCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHHh
Confidence 346788765333321 1 26777877753 246899998664 57888899999988 44 44
Q ss_pred CCCCHHHHHHHHHHHHH
Q 026988 196 KPAQEHLLAAAIVETIA 212 (230)
Q Consensus 196 KP~~~~~L~~~l~~~l~ 212 (230)
+.-++.+..+.+++.+.
T Consensus 480 ~~~d~~~~~~~~~~~~~ 496 (502)
T PLN02898 480 DQEDVLKATRKLHAILT 496 (502)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 44456555555555544
No 433
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=35.04 E-value=90 Score=27.59 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=37.5
Q ss_pred CceEEEEecCCChHhHHHHHHcCCCee------EeC-CCCHHHHHHHHHHHHHh
Q 026988 167 SIPIIAFTALVTADNERECFNSGMDTF------LNK-PAQEHLLAAAIVETIAR 213 (230)
Q Consensus 167 ~~pii~ls~~~~~~~~~~~~~~G~~~~------L~K-P~~~~~L~~~l~~~l~~ 213 (230)
.+|||...+-.+.++..+.+.+||+.+ +.+ |.-..++.+.|.+++..
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 589999999999999999999999854 455 76667777777766654
No 434
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.97 E-value=97 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=33.9
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
...+.+|+||+.....-+=+..+|...|..|++|.+-..
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~ 199 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD 199 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC
Confidence 467889999999999999999999999999998875543
No 435
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.96 E-value=83 Score=24.49 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=40.2
Q ss_pred CcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHH
Q 026988 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203 (230)
Q Consensus 124 ~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L 203 (230)
.+++.....+||+||....+. .+..+.+++ ..+|++++....+.+...+.++. .-..+-|.-.-+++
T Consensus 51 ~n~E~l~~l~PDlii~~~~~~----~~~~~~l~~--------~gi~v~~~~~~~~~~~~~~~~~~-lg~~~g~~~~a~~~ 117 (195)
T cd01143 51 PNVEKIVALKPDLVIVSSSSL----AELLEKLKD--------AGIPVVVLPAASSLDEIYDQIEL-IGKITGAEEEAEKL 117 (195)
T ss_pred CCHHHHhccCCCEEEEcCCcC----HHHHHHHHH--------cCCcEEEeCCCCCHHHHHHHHHH-HHHHhCChHHHHHH
Confidence 455555677899999865432 235566654 23677777654333333332221 11245555555566
Q ss_pred HHHHHHHHH
Q 026988 204 AAAIVETIA 212 (230)
Q Consensus 204 ~~~l~~~l~ 212 (230)
.+.+...+.
T Consensus 118 ~~~~~~~~~ 126 (195)
T cd01143 118 VKEMKQKID 126 (195)
T ss_pred HHHHHHHHH
Confidence 555554443
No 436
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.91 E-value=2.4e+02 Score=22.65 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC--------cHHHHHHHHHHHHhcccccchhccccCCcccccCCCC
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD--------GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~--------~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (230)
..+.+||++-.+.. +..+.+.|++.|+.|..+.- ..+....+. ...
T Consensus 115 ~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~-------------------------~~~ 168 (231)
T PF02602_consen 115 LRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALD-------------------------RGE 168 (231)
T ss_dssp CTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHH-------------------------HTT
T ss_pred CCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHH-------------------------cCC
Confidence 34468888776554 56788889889987654332 223344443 356
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe-eEeCCCCHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT-FLNKPAQEHLLA 204 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~-~L~KP~~~~~L~ 204 (230)
+|+|++= +...+-..+.............+++.++ +.....+.+.|+.. +..+-.+.+.|.
T Consensus 169 ~~~v~ft------S~~~~~~~~~~~~~~~~~~~~~~~~~ig----~~ta~~l~~~g~~~~~va~~~~~~~lv 230 (231)
T PF02602_consen 169 IDAVVFT------SPSAVRAFLELLKKNGALLKRVPIVAIG----PRTAKALRELGFKVDIVAERPTIEALV 230 (231)
T ss_dssp TSEEEES------SHHHHHHHHHHSSGHHHHHTTSEEEESS----HHHHHHHHHTT-SCSEEESSSSHHHHH
T ss_pred CCEEEEC------CHHHHHHHHHHhHhhhhhhhCCEEEEEC----HHHHHHHHHcCCCceEECCCCChhHhh
Confidence 7888873 3322222222111100122356666654 34455666888887 777777777664
No 437
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=34.89 E-value=3.4e+02 Score=24.42 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|||.--+-.+..++.+++.+|++.+..
T Consensus 254 r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 254 RYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 358999999999999999999999998754
No 438
>PRK10537 voltage-gated potassium channel; Provisional
Probab=34.76 E-value=3.5e+02 Score=24.50 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=63.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCc--ccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSN--LETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dlvl~D~ 141 (230)
+-+++|++-++.-+...++ |.+.|+.+.++..... +. ...++..+...+.... +....-.+.+.|++-.
T Consensus 240 k~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~d~~--~~------~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLG-LRQRGQAVTVIVPLGL--EH------RLPDDADLIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CCeEEEECCChHHHHHHHH-HHHCCCCEEEEECchh--hh------hccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 3479999999988665554 5667787766654211 11 1112222333333222 3333444667777644
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.-. .+-...+...|+ .++++++++.+. +++......++|+|..+.-
T Consensus 311 ~dD-~~Nl~ivL~ar~------l~p~~kIIa~v~--~~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 311 DND-ADNAFVVLAAKE------MSSDVKTVAAVN--DSKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred CCh-HHHHHHHHHHHH------hCCCCcEEEEEC--CHHHHHHHHhcCCCEEECH
Confidence 321 122334445564 345678887765 4566777889999965543
No 439
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=34.45 E-value=3.1e+02 Score=24.28 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=20.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~ 94 (230)
.++++|-|.......+...|+..|..+..+
T Consensus 26 ~~~lvvtd~~~~~~~v~~~L~~~g~~~~~f 55 (347)
T cd08184 26 DPAVFFVDDVFQGKDLISRLPVESEDMIIW 55 (347)
T ss_pred CeEEEEECcchhhhHHHHHHHhcCCcEEEE
Confidence 356666666655566777788877776665
No 440
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=34.42 E-value=2.5e+02 Score=22.75 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=21.1
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
.+.++||.+-..-+-..+.+.|.+.|+.+..+...
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 34566666666666666666666666666555433
No 441
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.41 E-value=2.6e+02 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCeEEEEcC
Q 026988 78 RIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~~ 96 (230)
..+.+.+++.||.+..+..
T Consensus 19 ~~i~~~~~~~g~~v~~~~~ 37 (282)
T cd06318 19 EAAKAHAKALGYELISTDA 37 (282)
T ss_pred HHHHHHHHHcCCEEEEEcC
Confidence 4466777888998877653
No 442
>PRK09776 putative diguanylate cyclase; Provisional
Probab=34.30 E-value=3.1e+02 Score=27.75 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=47.6
Q ss_pred cCCCCccEEEEecCCCC-----CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCC
Q 026988 129 HNSPHYDLILMDCQMGS-----MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQ 199 (230)
Q Consensus 129 ~~~~~~dlvl~D~~mp~-----~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~ 199 (230)
...-++|.|=+|..+-. .+...+++.+...-. ...+. ++..+-.+.+....+.+.|++ .|+.||..
T Consensus 1005 l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~-~iaegVEt~~~~~~l~~~g~~~~QG~~~~~P~~ 1079 (1092)
T PRK09776 1005 LKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQ----RLGMK-TIAGPVELPLVLDTLSGIGVDLAYGYAIARPQP 1079 (1092)
T ss_pred HHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH----HcCCc-EEecccCCHHHHHHHHHcCCCEEeccccCCCCc
Confidence 33668999999965421 123445555543211 12233 344566778888888999997 45899998
Q ss_pred HHHHHHHHH
Q 026988 200 EHLLAAAIV 208 (230)
Q Consensus 200 ~~~L~~~l~ 208 (230)
.+++.+..+
T Consensus 1080 ~~~~~~~~~ 1088 (1092)
T PRK09776 1080 LDLLLNSSY 1088 (1092)
T ss_pred HHHHHhhhh
Confidence 888776543
No 443
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.30 E-value=2.6e+02 Score=22.95 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc-EEEEecC---CCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 95 KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD-LILMDCQ---MGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 95 ~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-lvl~D~~---mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
.+..+....+. ...++ +++.|+. .....-+++++.++ ....+||
T Consensus 27 ~d~~~~a~~~~-------------------------~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~-------~~~~~pv 74 (243)
T cd04731 27 GDPVELAKRYN-------------------------EQGADELVFLDITASSEGRETMLDVVERVA-------EEVFIPL 74 (243)
T ss_pred CCHHHHHHHHH-------------------------HCCCCEEEEEcCCcccccCcccHHHHHHHH-------HhCCCCE
Q ss_pred EEEecCCChHhHHHHHHcCCCeeEe
Q 026988 171 IAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
++--+-.+.++...++..|++..+.
T Consensus 75 ~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 75 TVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred EEeCCCCCHHHHHHHHHcCCceEEE
No 444
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=34.29 E-value=2.2e+02 Score=22.76 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=65.4
Q ss_pred CCcEEEEEe--------ccHHHHHHHHHHH---HhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC
Q 026988 63 EGLSVLLVE--------DQAVLQRIGIRML---KKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131 (230)
Q Consensus 63 ~~~~iLiVd--------d~~~~~~~l~~~L---~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (230)
.|++-+++| |++.....+...+ +..|..+.+++|..+.--..- .
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~-------------------------~ 80 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARA-------------------------A 80 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhh-------------------------h
Confidence 345555554 3333334444444 456889999988777544322 2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCH-HHHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE-HLLAAAIVET 210 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~-~~L~~~l~~~ 210 (230)
.+.|+=++---. .-.+..+-+.+++. +-+..=+++.+..--.+...+-.+|+...+++|+.. ..+...+++.
T Consensus 81 ~~l~v~fi~~A~-KP~~~~fr~Al~~m------~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR~ 153 (175)
T COG2179 81 EKLGVPFIYRAK-KPFGRAFRRALKEM------NLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINRW 153 (175)
T ss_pred hhcCCceeeccc-CccHHHHHHHHHHc------CCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchhhhhhHH
Confidence 334443332211 11344444455542 222334445555556677888899999999999654 4455555555
Q ss_pred HHh
Q 026988 211 IAR 213 (230)
Q Consensus 211 l~~ 213 (230)
..+
T Consensus 154 ~Er 156 (175)
T COG2179 154 RER 156 (175)
T ss_pred HHH
Confidence 543
No 445
>PRK04302 triosephosphate isomerase; Provisional
Probab=34.26 E-value=2.6e+02 Score=22.84 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..+||+.-.+-...+....+...|+|+++.-
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 3589998888888888889999999988654
No 446
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=34.13 E-value=3.6e+02 Score=24.43 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=42.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC-eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~-~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+|+-||-++......++.+...|. ++. ...|..+.+..+.. ....+|+|++|--
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~-----------------------~~~~~D~vi~dPP 371 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW-----------------------AGQIPDVLLLDPP 371 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------------------cCCCCCEEEECcC
Confidence 4789999999988888888877765 333 33454443332210 1335899999853
Q ss_pred CCCCCHHHHHHHHHH
Q 026988 143 MGSMDGCKATRVIRR 157 (230)
Q Consensus 143 mp~~dg~~l~~~lr~ 157 (230)
=.++ ..++++.+..
T Consensus 372 r~G~-~~~~l~~l~~ 385 (431)
T TIGR00479 372 RKGC-AAEVLRTIIE 385 (431)
T ss_pred CCCC-CHHHHHHHHh
Confidence 2221 2566676664
No 447
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.04 E-value=2.4e+02 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=21.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
+++|||.+...-+-..+.+.|.+.|+.+..+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 346777777666666666666667777655443
No 448
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.89 E-value=3.4e+02 Score=24.14 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHH
Q 026988 72 DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151 (230)
Q Consensus 72 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l 151 (230)
-+......|.+..++.|..+.+..-...+.+.+. . .++-..-+--++.+-+.+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~-------------------------~--~~~~ayKIaS~E~~~~pl 139 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLE-------------------------S--LNPPAYKIASGEINDLPL 139 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHH-------------------------h--cCCCeEEecCccccChHH
Confidence 3455566788888899988888888888888886 2 223334445556677888
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHH----HHcCCCee
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNEREC----FNSGMDTF 193 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~----~~~G~~~~ 193 (230)
++.+-+ ..-|||+.|+-.+-+.+..+ .+.|..++
T Consensus 140 ik~iA~--------~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i 177 (347)
T COG2089 140 IKYIAK--------KGKPIILSTGMATIEEIEEAVAILRENGNPDI 177 (347)
T ss_pred HHHHHh--------cCCCEEEEcccccHHHHHHHHHHHHhcCCCCe
Confidence 888754 23599999998877665444 46676644
No 449
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=33.77 E-value=2.6e+02 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHh
Q 026988 198 AQEHLLAAAIVETIAR 213 (230)
Q Consensus 198 ~~~~~L~~~l~~~l~~ 213 (230)
.+.......+...+..
T Consensus 168 ~~~~~~~~~~~~~l~~ 183 (275)
T cd06295 168 FTEESGRAAMRALLER 183 (275)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3444445555555543
No 450
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=33.76 E-value=2.6e+02 Score=24.15 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=48.0
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC--cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD--GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
.++...+++++|...... +.+.+.. ...+..+.+ -.+....+.... ...-++++
T Consensus 34 ~L~~aDvI~~edtr~t~~-ll~~~~i-~~~~~~~~~~~~~~~~~~i~~~l----------------------~~G~~Val 89 (287)
T PRK14994 34 VLQAVDLIAAEDTRHTGL-LLQHFAI-NARLFALHDHNEQQKAETLLAKL----------------------QEGQNIAL 89 (287)
T ss_pred HHHhCCEEEEeCCcchHH-HHhhcCC-CCEEEEccCCCHHHHHHHHHHHH----------------------HCCCeEEE
Confidence 455667889998876533 3333321 123333333 333444433222 22346666
Q ss_pred E-ecCCCCC--CHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 139 M-DCQMGSM--DGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 139 ~-D~~mp~~--dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
+ |..+|.. .|..+++.+++ ..++|.++-+-
T Consensus 90 vSdaGdP~I~dpg~~Lv~~~~~--------~gi~v~vIPGi 122 (287)
T PRK14994 90 VSDAGTPLINDPGYHLVRTCRE--------AGIRVVPLPGP 122 (287)
T ss_pred EccCCCCceeCCHHHHHHHHHH--------CCCCEEEeCCH
Confidence 6 9999974 48888888875 24777777664
No 451
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=33.66 E-value=90 Score=24.46 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 78 RIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
..+.++.++.||.+.+++.+.-|...+.
T Consensus 76 g~l~~lae~~g~~v~i~~Ggt~ar~~ik 103 (158)
T PF01976_consen 76 GDLKKLAEKYGYKVYIATGGTLARKIIK 103 (158)
T ss_pred hHHHHHHHHcCCEEEEEcChHHHHHHHH
Confidence 5677888999999999999999998887
No 452
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=33.59 E-value=2.9e+02 Score=23.15 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCcEEEEEec-cHHHHHHHHHHHHhcCCeEEEEc-------------CcHHHHHHHHHHHHhcccccchhccccCCcccc
Q 026988 63 EGLSVLLVED-QAVLQRIGIRMLKKLGAGVTLVK-------------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLET 128 (230)
Q Consensus 63 ~~~~iLiVdd-~~~~~~~l~~~L~~~g~~v~~~~-------------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (230)
.-.||-++-. .+.....+.++|+..|++|.... +.+...+.+.+.
T Consensus 119 g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~--------------------- 177 (239)
T TIGR02990 119 GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA--------------------- 177 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh---------------------
Confidence 3457777764 33445778899999999886552 223333333322
Q ss_pred cCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 129 HNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 129 ~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....+|.|++-+ ..+..++++..+.+. -..||| |+ +..-.......+|..+-+
T Consensus 178 -~~~~aDAifisC--TnLrt~~vi~~lE~~-------lGkPVl--sS-Nqat~W~~Lr~~G~~~~~ 230 (239)
T TIGR02990 178 -FDPDADALFLSC--TALRAATCAQRIEQA-------IGKPVV--TS-NQATAWRCLRLCGDPDMR 230 (239)
T ss_pred -cCCCCCEEEEeC--CCchhHHHHHHHHHH-------HCCCEE--EH-HHHHHHHHHHHcCCCCCC
Confidence 145678777764 345677777777541 235664 44 234445555566665433
No 453
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=33.39 E-value=2.9e+02 Score=23.15 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=48.7
Q ss_pred EEEEEe--ccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 66 SVLLVE--DQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 66 ~iLiVd--d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+|.+++ ........+...|...|..+....+.......+.. -.+-|++|+ +..
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~------------------------~~~~Dv~I~-iS~ 184 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQA------------------------LSPDDLLLA-ISY 184 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHh------------------------CCCCCEEEE-EcC
Confidence 555554 45556666777777778877766555444333321 234454443 344
Q ss_pred CCCC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH
Q 026988 144 GSMD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182 (230)
Q Consensus 144 p~~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~ 182 (230)
++.+ -.++++..++ ..++||++|+.......
T Consensus 185 sg~~~~~~~~~~~ak~--------~ga~iI~IT~~~~s~la 217 (278)
T PRK11557 185 SGERRELNLAADEALR--------VGAKVLAITGFTPNALQ 217 (278)
T ss_pred CCCCHHHHHHHHHHHH--------cCCCEEEEcCCCCCchH
Confidence 5443 3455665553 45899999997655443
No 454
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=33.37 E-value=4.5e+02 Score=26.68 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=60.3
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHH
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRI 79 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~ 79 (230)
|+|++++++.|||+++++|..|.|++|+ .+|... ..... ........+.+++++.+++.....
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~-------~~~~~---------~~~~~~~~g~~i~l~~~~~~~~~~ 698 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYG-------AQYPQ---------KKGVEGLQGKRCWLAVRNASLEQF 698 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCc-------ccccc---------cccCcccCCCEEEEEcCCHHHHHH
Confidence 6899999999999999999999999998 444321 10000 001122456789999999999999
Q ss_pred HHHHHHhcCCeEEEEc
Q 026988 80 GIRMLKKLGAGVTLVK 95 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~ 95 (230)
+..+|..+|+.+..+.
T Consensus 699 l~~~l~~~G~~v~~~~ 714 (924)
T PRK10841 699 LETLLQRSGIQVQRYE 714 (924)
T ss_pred HHHHHHHCCCeEEEcc
Confidence 9999999999887665
No 455
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=33.36 E-value=4e+02 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
..+|||.=.+-....++..++.+||+.+.
T Consensus 330 ~~~~viadGGi~~~~di~kAla~GA~~v~ 358 (486)
T PRK05567 330 YGIPVIADGGIRYSGDIAKALAAGASAVM 358 (486)
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhCCCEEE
Confidence 35788888888899999999999999764
No 456
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.33 E-value=3.2e+02 Score=23.64 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=36.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.+|+|++ -+.|| .+++..|.. ....+||+-+-. |--+||.- ++++++...|.++++
T Consensus 64 ~~dlvi~----lGGDG-T~L~aa~~~-----~~~~~PilGIN~-------------G~lGFLt~-~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 64 SADMVIS----IGGDG-TFLRTATYV-----GNSNIPILGINT-------------GRLGFLAT-VSKEEIEETIDELLN 119 (292)
T ss_pred CCCEEEE----ECCcH-HHHHHHHHh-----cCCCCCEEEEec-------------CCCCcccc-cCHHHHHHHHHHHHc
Confidence 4677776 36677 344444432 224678886543 33456664 778888888888887
Q ss_pred hc
Q 026988 213 RK 214 (230)
Q Consensus 213 ~~ 214 (230)
..
T Consensus 120 g~ 121 (292)
T PRK01911 120 GD 121 (292)
T ss_pred CC
Confidence 54
No 457
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=33.23 E-value=2.4e+02 Score=22.19 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=36.5
Q ss_pred cEEEEEec-cHHHHHHHHHHHHhcCCeEEEE-------------------cCcHHHHHHHHHHHHhcccccchhccccCC
Q 026988 65 LSVLLVED-QAVLQRIGIRMLKKLGAGVTLV-------------------KDGEAAVEAMTLMINAAGKNHQIQNLHHGS 124 (230)
Q Consensus 65 ~~iLiVdd-~~~~~~~l~~~L~~~g~~v~~~-------------------~~~~~al~~l~~~~~~~~~~~~~~~~~~~~ 124 (230)
.+|.+.-| .+..+..++ .++..|..+..+ .|..+.++.+..
T Consensus 50 V~i~~~~d~~~~~~~i~~-~~e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~------------------ 110 (170)
T COG2061 50 VQIVFEGDREDKDAKIIR-LLEEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINS------------------ 110 (170)
T ss_pred EEEEEEecccHHHHHHHH-HHHhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhc------------------
Confidence 35555555 555555544 448888765544 355666666541
Q ss_pred cccccCCCCccEEEEecCCCCCCH
Q 026988 125 NLETHNSPHYDLILMDCQMGSMDG 148 (230)
Q Consensus 125 ~~~~~~~~~~dlvl~D~~mp~~dg 148 (230)
.....++=+|+.||+.+|
T Consensus 111 ------ig~A~vvDl~L~Mp~~e~ 128 (170)
T COG2061 111 ------IGGAEVVDLSLSMPGIEG 128 (170)
T ss_pred ------cCCEEEEEEEeecCCCCC
Confidence 234567789999998887
No 458
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=33.18 E-value=44 Score=28.07 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=50.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
|.+|..+|.+|.+..++..-|....-. .....++...+ .+.+.++-+++. .....||+|.+|-+.
T Consensus 97 G~~V~~lErspvia~Ll~dGL~r~~~~---~~~~~~~~~ri-----------~l~~~d~~~~L~-~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 97 GCKVTGLERSPVIAALLKDGLKRAQQD---PELLAEAMRRI-----------QLIHGDALEYLR-QPDNSFDVVYFDPMF 161 (234)
T ss_dssp T--EEEEE--HHHHHHHHHHHHHHHHS---TTTHHHHHHHE-----------EEEES-CCCHCC-CHSS--SEEEE--S-
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHhC---cHhHHHHHhCC-----------EEEcCCHHHHHh-hcCCCCCEEEECCCC
Confidence 568999999999999999998874210 00112232222 244445555555 345689999999999
Q ss_pred CCCC-------HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 144 GSMD-------GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 144 p~~d-------g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
|.-. .+++++.+- .. .....+....+++..-.-++.|
T Consensus 162 p~~~ksa~vkk~m~~lr~L~---~~-------------d~~~~ell~~Alr~Ar~RVVvK 205 (234)
T PF04445_consen 162 PERKKSALVKKEMRVLRDLA---GH-------------DPDAEELLEEALRVARKRVVVK 205 (234)
T ss_dssp ----TTTT-SHHHHHHHHHH---SH-------------HTTGGGGHHHHHHH-SSEEEEE
T ss_pred CCcccccccccchHHHHHhh---cc-------------CcCHHHHHHHHHHhcCcEEEEe
Confidence 8632 233333332 11 1233455677777766777777
No 459
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.10 E-value=2.4e+02 Score=22.20 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh--HhHHHHHHcCCCeeEeCC
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA--DNERECFNSGMDTFLNKP 197 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~--~~~~~~~~~G~~~~L~KP 197 (230)
..|++.++.+|+. .+++|+++..-..+. .....+.++|++..+.-.
T Consensus 38 ~~g~~~i~~i~~~------~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 38 SEGMEAVRALREA------FPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred HhCHHHHHHHHHH------CCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 4578888888852 234677764222222 345677899999666543
No 460
>PRK00654 glgA glycogen synthase; Provisional
Probab=33.07 E-value=3.8e+02 Score=24.43 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=39.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHH--HHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC--FNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~--~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
..|+.++-- ..+.-|+..+.-+. ..+|+|+.......+.+... ...+.++++..|.+.++|..+|.++
T Consensus 356 ~aDv~v~PS-~~E~~gl~~lEAma---------~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~ 425 (466)
T PRK00654 356 GADMFLMPS-RFEPCGLTQLYALR---------YGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRA 425 (466)
T ss_pred hCCEEEeCC-CCCCchHHHHHHHH---------CCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 467777642 23444555555543 23556553222222211100 0112678999999999999999887
Q ss_pred HH
Q 026988 211 IA 212 (230)
Q Consensus 211 l~ 212 (230)
+.
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 75
No 461
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=33.06 E-value=3e+02 Score=23.22 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT 178 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~ 178 (230)
|..+++.+-+ .+.+-.++++++...
T Consensus 106 g~~~~~~L~~------~g~~~~i~~i~g~~~ 130 (302)
T TIGR02634 106 GEMQARAVLE------AAPKGNYFLMGGSPT 130 (302)
T ss_pred HHHHHHHHHh------hCCCCCEEEEeCCCC
Confidence 4445555542 344457888887533
No 462
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=33.04 E-value=3.5e+02 Score=24.06 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCH----HH
Q 026988 76 LQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG----CK 150 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg----~~ 150 (230)
....+.+..+.+|..+. .+.|.+|.-..+. ...+++|=++- -+... ++
T Consensus 218 ~L~~l~~~A~~LGme~LVEVH~~~ElerAl~-------------------------~~ga~iIGINN--RdL~Tf~vDl~ 270 (338)
T PLN02460 218 DIKYMLKICKSLGMAALIEVHDEREMDRVLG-------------------------IEGVELIGINN--RSLETFEVDIS 270 (338)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeC--CCCCcceECHH
Confidence 34556677778898754 7889888877775 22345554443 22222 33
Q ss_pred HHHHHHHhhhhhhc-CCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 151 ATRVIRRLEAEAET-GQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 151 l~~~lr~~~~~~~~-~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
...+|......... ...+-+|.-|+-.+.++.....++|++++|.=
T Consensus 271 ~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVG 317 (338)
T PLN02460 271 NTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVG 317 (338)
T ss_pred HHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 33334320000000 01233455577788899999999999999873
No 463
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=33.02 E-value=1.3e+02 Score=26.78 Aligned_cols=32 Identities=31% Similarity=0.271 Sum_probs=22.7
Q ss_pred CcEEEEEeccHHH-----HHHHHHHHHhcCCeEEEEc
Q 026988 64 GLSVLLVEDQAVL-----QRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 64 ~~~iLiVdd~~~~-----~~~l~~~L~~~g~~v~~~~ 95 (230)
+.|+|||-|.... ...+...|+..|+.+..+.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~ 64 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELG 64 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEEC
Confidence 3689988775443 3567888888888776654
No 464
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=32.87 E-value=3.7e+02 Score=24.20 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=34.9
Q ss_pred CCCccEEEEecCC-------CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 131 SPHYDLILMDCQM-------GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 131 ~~~~dlvl~D~~m-------p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
....|+|.++-.. ...+-.++.+.+++ .++|||+ ..-.+.+....+++.|+|.++
T Consensus 153 eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~--------~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 153 KAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE--------LDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred HCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH--------CCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 4568999887321 22233334444432 3578886 455667788889999999876
No 465
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.64 E-value=2.9e+02 Score=22.99 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=41.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-.. .+.-|..+++-+. ..+|||....... ......+-.+++..|.+.+++...+..++..
T Consensus 267 ~d~~l~~s~-~e~~~~~~lEa~a---------~g~PvI~~~~~~~----~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (364)
T cd03814 267 ADVFVFPSR-TETFGLVVLEAMA---------SGLPVVAPDAGGP----ADIVTDGENGLLVEPGDAEAFAAALAALLAD 332 (364)
T ss_pred CCEEEECcc-cccCCcHHHHHHH---------cCCCEEEcCCCCc----hhhhcCCcceEEcCCCCHHHHHHHHHHHHcC
Confidence 566665432 2333455555443 3577775433222 2334556778999999999999999988774
Q ss_pred cc
Q 026988 214 KS 215 (230)
Q Consensus 214 ~~ 215 (230)
..
T Consensus 333 ~~ 334 (364)
T cd03814 333 PE 334 (364)
T ss_pred HH
Confidence 43
No 466
>PRK01581 speE spermidine synthase; Validated
Probab=32.62 E-value=3.4e+02 Score=24.54 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=16.8
Q ss_pred CCCccEEEEecCCCCC------CHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSM------DGCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~------dg~~l~~~lr~ 157 (230)
...||+||+|+.-|.. -..++++.+++
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~ 256 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIAT 256 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHH
Confidence 4579999999754422 12445666654
No 467
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=32.57 E-value=3.8e+02 Score=24.24 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=42.7
Q ss_pred CcEEEEEeccH----HHHHHHHHHHHhcCCeEEEEc---------CcHHHHHHHHHHHHhcccccchhccccCCcccccC
Q 026988 64 GLSVLLVEDQA----VLQRIGIRMLKKLGAGVTLVK---------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHN 130 (230)
Q Consensus 64 ~~~iLiVdd~~----~~~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (230)
..|+|||-|.- -....+.+.|+..|..+.+++ +..++.+.++
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~------------------------- 83 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAR------------------------- 83 (377)
T ss_pred CCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHH-------------------------
Confidence 36899998874 345677888888886665554 2334444444
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIR 156 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr 156 (230)
...||.||- +.+.+.+++++-+.
T Consensus 84 ~~~~D~iIa---lGGGS~~D~AK~i~ 106 (377)
T COG1454 84 EFGPDTIIA---LGGGSVIDAAKAIA 106 (377)
T ss_pred hcCCCEEEE---eCCccHHHHHHHHH
Confidence 667888875 56666666666554
No 468
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=32.50 E-value=2.4e+02 Score=24.03 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=45.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCc----HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDG----EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~----~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
++++|.+++..|...+.....|.+..- .+....|| .+- +.+.+.|. ...||+
T Consensus 107 ~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~---------------------~s~pdi 164 (253)
T COG1922 107 EGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIA---------------------ASGPDI 164 (253)
T ss_pred cCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHH---------------------hcCCCE
Confidence 368999999999999999999987643 55554433 222 23333332 678999
Q ss_pred EEEecCCCCCCHH
Q 026988 137 ILMDCQMGSMDGC 149 (230)
Q Consensus 137 vl~D~~mp~~dg~ 149 (230)
+++-+.+|...-+
T Consensus 165 l~VgmG~P~QE~w 177 (253)
T COG1922 165 LLVGMGVPRQEIW 177 (253)
T ss_pred EEEeCCCchhHHH
Confidence 9999999977643
No 469
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.48 E-value=3e+02 Score=23.00 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC-CCeeEe------CCCCHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG-MDTFLN------KPAQEHLLAAAI 207 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G-~~~~L~------KP~~~~~L~~~l 207 (230)
+++++.+++ ..++||+..-+-.+.++...++..| ++..+. +-++..++.+.+
T Consensus 188 ~~~~~~i~~-------~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 188 LELTKAVSE-------AVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred HHHHHHHHH-------hCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 677777774 2468999999999999999999988 887543 335555554433
No 470
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=32.40 E-value=65 Score=24.82 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.6
Q ss_pred HHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 80 GIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 80 l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.++..+.|-.+.++.+-++|++.++
T Consensus 48 ~~kla~k~G~~vlvf~dL~DAlevL~ 73 (147)
T COG4080 48 VLKLAFKLGKPVLVFPDLDDALEVLR 73 (147)
T ss_pred HHHHHHHhCCcEEEehhHHHHHHhcC
Confidence 44555677899999999999999886
No 471
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=32.28 E-value=3.3e+02 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=18.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA 89 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~ 89 (230)
.+|+-||-++......++.++..|.
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l 220 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGL 220 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4677888777777777777766665
No 472
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.20 E-value=1.4e+02 Score=25.90 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=35.9
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
...+.+|+||......-+=+..+|...+..|+.|.+-..-+.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~ 196 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA 196 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 467889999999999999999999999999999977655443
No 473
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=32.18 E-value=66 Score=27.36 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCCCccEEEEecCCCCCCH---HHHHHHHHHhhhhhhcCCCceEEEEec
Q 026988 130 NSPHYDLILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 130 ~~~~~dlvl~D~~mp~~dg---~~l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
....||++++|--..+.|- .++.+.|++++.. .+-|+++|-
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-----g~tIl~vtH 197 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-----GKTVLMVTH 197 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-----CCEEEEEeC
Confidence 4678999999998887773 3344444443221 344555553
No 474
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=32.15 E-value=2e+02 Score=25.47 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHh----HHHHHHcCC--CeeEeC
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADN----ERECFNSGM--DTFLNK 196 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~----~~~~~~~G~--~~~L~K 196 (230)
+.++.++++ ....++|.|++|+-.+.+. ..-+.++|+ ++||.=
T Consensus 228 eA~~~f~eq----~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~G 276 (325)
T TIGR01232 228 EAAQHFKDQ----DAATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCG 276 (325)
T ss_pred HHHHHHHHH----hhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEee
Confidence 677777742 3446899999999888765 344567787 788764
No 475
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=32.11 E-value=1.2e+02 Score=26.97 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=22.1
Q ss_pred cEEEEEeccHH-----HHHHHHHHHHhcCCeEEEEc
Q 026988 65 LSVLLVEDQAV-----LQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 65 ~~iLiVdd~~~-----~~~~l~~~L~~~g~~v~~~~ 95 (230)
.|+|||-|... ....+...|+..|..+..+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~ 61 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFD 61 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeC
Confidence 58998887654 33567788888887776653
No 476
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=32.08 E-value=3.6e+02 Score=23.89 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=36.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCC--hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVT--ADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~--~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
..|++++. | .|..+.+.+- ..+|+|++..... ..+..-..+.|+. ++ +-+.+++...|..+
T Consensus 273 ~aDl~I~k---~--gg~tl~EA~a---------~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~--~~~~~~l~~~i~~l 335 (391)
T PRK13608 273 SSQLMITK---P--GGITISEGLA---------RCIPMIFLNPAPGQELENALYFEEKGFG-KI--ADTPEEAIKIVASL 335 (391)
T ss_pred hhhEEEeC---C--chHHHHHHHH---------hCCCEEECCCCCCcchhHHHHHHhCCcE-EE--eCCHHHHHHHHHHH
Confidence 36777763 2 2544444443 3589998864322 2223333455554 33 34788888888887
Q ss_pred HHh
Q 026988 211 IAR 213 (230)
Q Consensus 211 l~~ 213 (230)
+..
T Consensus 336 l~~ 338 (391)
T PRK13608 336 TNG 338 (391)
T ss_pred hcC
Confidence 754
No 477
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.98 E-value=3.1e+02 Score=23.12 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
++.++.+++. ...++|||...+-.+.++..+++..|++.+
T Consensus 230 ~~~v~~i~~~-----~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAAR-----LQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHh-----cCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 4455666541 112689999999999999999999998855
No 478
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.97 E-value=3.2e+02 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=24.8
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
...||.+==+-.+.+...+..+.|+|+++.-.
T Consensus 201 t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 201 TNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred cCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 46788874455567888888999999998873
No 479
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=31.91 E-value=2.1e+02 Score=24.48 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEc-CcHHHHHHH
Q 026988 75 VLQRIGIRMLKKLGAGVTLVK-DGEAAVEAM 104 (230)
Q Consensus 75 ~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l 104 (230)
.....+.+.|.+.||++..+. ++.+.+..+
T Consensus 22 ~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l 52 (296)
T PRK14569 22 KSGKAVLDSLISQGYDAVGVDASGKELVAKL 52 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCchhHHHHh
Confidence 344567788888999988775 334444444
No 480
>PLN02778 3,5-epimerase/4-reductase
Probab=31.88 E-value=2.2e+02 Score=24.32 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~ 94 (230)
...++|||.+-.-.+=..+.+.|.+.|++|...
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345799999999999999999999999988643
No 481
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.88 E-value=97 Score=26.78 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=46.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
...+.+|+||+.....-.=+..+|.+.|..|++|.+-..-+..+ ....|+|+.-
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~--------------------------~~~ADIvV~A 207 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAH--------------------------TKKADIVIVG 207 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHH--------------------------HhhCCEEEEe
Confidence 56788999999999999999999998899999887655433322 2346788877
Q ss_pred cCCCCCCH
Q 026988 141 CQMGSMDG 148 (230)
Q Consensus 141 ~~mp~~dg 148 (230)
..-|+.-.
T Consensus 208 vGkp~~i~ 215 (281)
T PRK14183 208 VGKPNLIT 215 (281)
T ss_pred cCcccccC
Confidence 76666543
No 482
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=31.87 E-value=1.2e+02 Score=25.70 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=37.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
...||++|+=--.|...|-.-.+.+-+ ...+|.|++|............+.|+-.+|.|
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~-------~~~iP~IvI~D~p~~k~kd~l~~~g~GYIivk 115 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLS-------AKGIPCIVISDAPTKKAKDALEEEGFGYIIVK 115 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHH-------HSSS-EEEEEEGGGGGGHHHHHHTT-EEEEET
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHH-------hCCCCEEEEcCCCchhhHHHHHhcCCcEEEEe
Confidence 346999988777788889887776653 25689999998776666555555665544555
No 483
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.76 E-value=1.1e+02 Score=26.42 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=34.2
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
...+.+|+||......-+=+..+|...|..|++|.+-..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~ 193 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK 193 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence 467889999999999999999999999999999976544
No 484
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=31.74 E-value=1.6e+02 Score=19.75 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=36.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
..++.+-.+|+. +.-++.. ..+..+||+.+.+...... ...+..|++.++|.+.|.
T Consensus 26 ~~~~~l~~vDI~----~d~~l~~---------~Y~~~IPVl~~~~~~~~~~---------~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 26 EFPFELEEVDID----EDPELFE---------KYGYRIPVLHIDGIRQFKE---------QEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp TSTCEEEEEETT----TTHHHHH---------HSCTSTSEEEETT-GGGCT---------SEEEESSB-HHHHHHHHH
T ss_pred hcCceEEEEECC----CCHHHHH---------HhcCCCCEEEEcCcccccc---------cceeCCCCCHHHHHHHhC
Confidence 456889999998 2222222 2556899999977433222 457778899999988763
No 485
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=31.66 E-value=3.3e+02 Score=23.32 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=23.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEec
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
...||+|++...-+ +...+++.+++ .+.+.+++..+.
T Consensus 199 ~~~~d~v~~~~~~~--~~~~~~~~~~~------~g~~~~~~~~~~ 235 (342)
T cd06329 199 ASGADTVITGNWGN--DLLLLVKQAAD------AGLKLPFYTPYL 235 (342)
T ss_pred HcCCCEEEEcccCc--hHHHHHHHHHH------cCCCceEEeccc
Confidence 56799999966433 56677777775 233566665443
No 486
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.62 E-value=1.3e+02 Score=24.37 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=28.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEA 99 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~ 99 (230)
++|.|||----+...+.+.|++.|+ .+....+.++
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~ 38 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA 38 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH
Confidence 6899999888777889999999998 7777766544
No 487
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.62 E-value=2.8e+02 Score=22.38 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCeEEEE-c---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHH
Q 026988 77 QRIGIRMLKKLGAGVTLV-K---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~-~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~ 152 (230)
...+++.++..|+.+..+ . +.++-.+.+...+ ...+|.||+...-+. ...+++
T Consensus 17 ~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i----------------------~~~~d~Iiv~~~~~~-~~~~~l 73 (257)
T PF13407_consen 17 IKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAI----------------------SQGVDGIIVSPVDPD-SLAPFL 73 (257)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHH----------------------HTTESEEEEESSSTT-TTHHHH
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHH----------------------HhcCCEEEecCCCHH-HHHHHH
Confidence 345678888889987774 3 3334444555443 446999998765543 234667
Q ss_pred HHHHHhhhhhhcCCCceEEEEecC
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
++++. ..+|||.+-..
T Consensus 74 ~~~~~--------~gIpvv~~d~~ 89 (257)
T PF13407_consen 74 EKAKA--------AGIPVVTVDSD 89 (257)
T ss_dssp HHHHH--------TTSEEEEESST
T ss_pred HHHhh--------cCceEEEEecc
Confidence 77764 35899987554
No 488
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=31.47 E-value=84 Score=22.28 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.++.+||||+..+...+.++.+++ .|.++++++...
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLE-AGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCch
Confidence 567899999999999888888876 457777665543
No 489
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=31.39 E-value=2.8e+02 Score=22.32 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHh
Q 026988 198 AQEHLLAAAIVETIAR 213 (230)
Q Consensus 198 ~~~~~L~~~l~~~l~~ 213 (230)
.+.+.-...+..++..
T Consensus 159 ~~~~~~~~~~~~~l~~ 174 (268)
T cd01575 159 SSFALGRELLAELLAR 174 (268)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3445555666666654
No 490
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.37 E-value=3.6e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.7
Q ss_pred CceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 167 SIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 167 ~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+|||.--+-.+..++..++..|++.+..
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 58888777777889999999999998765
No 491
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=31.33 E-value=2.5e+02 Score=23.95 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=54.6
Q ss_pred EEEEEeccHHHHHH----HHHHHHhcC--C-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 66 SVLLVEDQAVLQRI----GIRMLKKLG--A-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 66 ~iLiVdd~~~~~~~----l~~~L~~~g--~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
.+|+.|++-...-. +...=+..+ . --..+++.+++.+++. ..+|.|.
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~--------------------------~gaDyI~ 203 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAE--------------------------AGADIIM 203 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHH--------------------------cCCCEEE
Confidence 56777776444322 222222233 2 3356788888888764 4589999
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
+|-.-| +-++++.+. ....+|+++ ++.-+.++.....+.|+|.+-
T Consensus 204 ld~~~~-----e~lk~~v~~-----~~~~ipi~A-sGGI~~~ni~~~a~~Gvd~Is 248 (265)
T TIGR00078 204 LDNMKP-----EEIKEAVQL-----LKGRVLLEA-SGGITLDNLEEYAETGVDVIS 248 (265)
T ss_pred ECCCCH-----HHHHHHHHH-----hcCCCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 986444 333433321 112366554 555678899999999999654
No 492
>PRK06182 short chain dehydrogenase; Validated
Probab=31.33 E-value=2.5e+02 Score=23.18 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=8.6
Q ss_pred CCccEEEEecCC
Q 026988 132 PHYDLILMDCQM 143 (230)
Q Consensus 132 ~~~dlvl~D~~m 143 (230)
..+|+++.....
T Consensus 73 ~~id~li~~ag~ 84 (273)
T PRK06182 73 GRIDVLVNNAGY 84 (273)
T ss_pred CCCCEEEECCCc
Confidence 468888877654
No 493
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.27 E-value=4.5e+02 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|||+=.+-....++..++.+||+.+..
T Consensus 350 ~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 350 HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 358999999999999999999999997754
No 494
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.26 E-value=3.8e+02 Score=23.88 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCccEEEEecCCCC-------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCC
Q 026988 132 PHYDLILMDCQMGS-------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQ 199 (230)
Q Consensus 132 ~~~dlvl~D~~mp~-------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~ 199 (230)
..+|.|++---.+. .-|++.++++.+ ..++||+.+-+- +.+.+......|++++ +.+-.+
T Consensus 259 ~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~-------~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~d 330 (347)
T PRK02615 259 EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAK-------EAPIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAED 330 (347)
T ss_pred cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHH-------hCCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCC
Confidence 35787776443331 236788887764 235899999775 5778888999999976 444445
Q ss_pred HHHHHHHHHHHHH
Q 026988 200 EHLLAAAIVETIA 212 (230)
Q Consensus 200 ~~~L~~~l~~~l~ 212 (230)
+......+...+.
T Consensus 331 p~~~~~~l~~~l~ 343 (347)
T PRK02615 331 PKQATQELLKQLS 343 (347)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555444
No 495
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=31.18 E-value=2.7e+02 Score=22.12 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=39.5
Q ss_pred CccEEEEecCCC----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHH
Q 026988 133 HYDLILMDCQMG----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEHLL 203 (230)
Q Consensus 133 ~~dlvl~D~~mp----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L 203 (230)
.+|+|-+.-... ...+.+.++.+++.. +. +.|++++.-+.+....+++.|++.+.. +.-++.+.
T Consensus 126 g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~------~~-~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~ 198 (206)
T TIGR03128 126 GADYIGVHTGLDEQAKGQNPFEDLQTILKLV------KE-ARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEA 198 (206)
T ss_pred CCCEEEEcCCcCcccCCCCCHHHHHHHHHhc------CC-CcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHH
Confidence 578776642111 112445556665421 22 345556777888999999999996644 43344444
Q ss_pred HHHHH
Q 026988 204 AAAIV 208 (230)
Q Consensus 204 ~~~l~ 208 (230)
...++
T Consensus 199 ~~~l~ 203 (206)
T TIGR03128 199 ARQIR 203 (206)
T ss_pred HHHHH
Confidence 44443
No 496
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=31.17 E-value=2.4e+02 Score=24.56 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=27.0
Q ss_pred CceEEEEecCCC--h-Hh-----HHHHHHcCCC----eeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 167 SIPIIAFTALVT--A-DN-----ERECFNSGMD----TFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 167 ~~pii~ls~~~~--~-~~-----~~~~~~~G~~----~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+-+|.++++... . .. ...+.+.|.. .+..-+++.+.-...+.+++....
T Consensus 175 ~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~ 235 (333)
T COG1609 175 HRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGE 235 (333)
T ss_pred CceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCC
Confidence 456777777631 1 22 2233345544 233334677777777777776443
No 497
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=31.16 E-value=4.1e+02 Score=24.16 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=47.0
Q ss_pred CccEEEEecCC----CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHHHH
Q 026988 133 HYDLILMDCQM----GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQEHLL 203 (230)
Q Consensus 133 ~~dlvl~D~~m----p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~L 203 (230)
..|.|.+.... ....+++.++.+++. .++||++.-+- ..+....+++.|++.+ |.+.-++.+.
T Consensus 131 GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-------~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~ 202 (430)
T PRK07028 131 GVDYINVHVGIDQQMLGKDPLELLKEVSEE-------VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEA 202 (430)
T ss_pred CCCEEEEEeccchhhcCCChHHHHHHHHhh-------CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHH
Confidence 46666554321 123556777777641 24888887665 6778889999999955 6666677777
Q ss_pred HHHHHHHHH
Q 026988 204 AAAIVETIA 212 (230)
Q Consensus 204 ~~~l~~~l~ 212 (230)
.+.+++.+.
T Consensus 203 ~~~l~~~i~ 211 (430)
T PRK07028 203 ARKIREAID 211 (430)
T ss_pred HHHHHHHHh
Confidence 776766664
No 498
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=31.14 E-value=4.1e+02 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.8
Q ss_pred CCeeEeCCCCHHHHHHHHHHHHH
Q 026988 190 MDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 190 ~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.++++..|.++++|..+|.+++.
T Consensus 414 ~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 414 GTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CceEEeCCCCHHHHHHHHHHHHH
Confidence 78899999999999999988876
No 499
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=31.13 E-value=1.5e+02 Score=26.37 Aligned_cols=35 Identities=23% Similarity=0.502 Sum_probs=24.3
Q ss_pred cCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCH
Q 026988 87 LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDG 148 (230)
Q Consensus 87 ~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg 148 (230)
.|+++.+++||-+-..+ ...++++++|-..+=.||
T Consensus 140 ~~~diIi~DDG~Qh~rL---------------------------~rD~eIvvvd~~r~fGng 174 (336)
T COG1663 140 LGCDIIVLDDGLQHYRL---------------------------HRDFEIVVVDGQRGFGNG 174 (336)
T ss_pred CCCCEEEEcCcchhhHh---------------------------hcceeEEEEeccccCCCc
Confidence 57888888888665443 345788888887774454
No 500
>PLN02939 transferase, transferring glycosyl groups
Probab=31.05 E-value=6.1e+02 Score=26.14 Aligned_cols=70 Identities=13% Similarity=-0.014 Sum_probs=40.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHH-----HHcCCCeeEeCCCCHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNEREC-----FNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~-----~~~G~~~~L~KP~~~~~L~~~l 207 (230)
..|++++=-. -+.-|+..+.-++ ..+|+|+....+-.+.+... ...|.++|+..|.+.+.|..+|
T Consensus 856 aADIFLmPSr-~EPfGLvqLEAMA---------yGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL 925 (977)
T PLN02939 856 ASDMFIIPSM-FEPCGLTQMIAMR---------YGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSAL 925 (977)
T ss_pred hCCEEEECCC-ccCCcHHHHHHHH---------CCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHH
Confidence 3677776332 2344555555554 22445543322222222110 1236889999999999999999
Q ss_pred HHHHH
Q 026988 208 VETIA 212 (230)
Q Consensus 208 ~~~l~ 212 (230)
.+++.
T Consensus 926 ~rAL~ 930 (977)
T PLN02939 926 ERAFN 930 (977)
T ss_pred HHHHH
Confidence 88765
Done!