Query 026988
Match_columns 230
No_of_seqs 201 out of 2045
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 6E-29 2E-33 190.3 15.2 122 63-213 11-133 (134)
2 3mm4_A Histidine kinase homolo 100.0 7.2E-28 2.5E-32 196.1 15.6 187 4-217 12-200 (206)
3 2lpm_A Two-component response 99.9 1.7E-26 5.8E-31 174.1 2.0 114 63-212 7-121 (123)
4 3gl9_A Response regulator; bet 99.9 1.5E-23 5.3E-28 155.9 16.6 119 65-212 3-121 (122)
5 3t6k_A Response regulator rece 99.9 2.5E-23 8.7E-28 157.5 16.8 125 63-216 3-127 (136)
6 3f6p_A Transcriptional regulat 99.9 4.7E-23 1.6E-27 152.6 16.3 117 65-213 3-119 (120)
7 2r25_B Osmosensing histidine p 99.9 1.1E-22 3.8E-27 153.4 16.5 125 65-214 3-128 (133)
8 3m6m_D Sensory/regulatory prot 99.9 1E-22 3.5E-27 155.6 16.4 125 62-213 12-136 (143)
9 3h1g_A Chemotaxis protein CHEY 99.9 1.4E-22 4.7E-27 151.8 16.0 123 63-213 4-127 (129)
10 3rqi_A Response regulator prot 99.9 6.5E-23 2.2E-27 163.4 12.2 122 62-214 5-126 (184)
11 1dbw_A Transcriptional regulat 99.9 7.7E-22 2.6E-26 146.8 17.2 119 64-213 3-121 (126)
12 3hzh_A Chemotaxis response reg 99.9 3.1E-22 1.1E-26 155.1 14.8 122 62-212 34-156 (157)
13 2pl1_A Transcriptional regulat 99.9 1.4E-21 4.9E-26 143.8 17.1 119 65-214 1-119 (121)
14 3r0j_A Possible two component 99.9 6.2E-22 2.1E-26 165.0 16.9 121 63-214 22-142 (250)
15 3crn_A Response regulator rece 99.9 1.1E-21 3.9E-26 147.3 16.4 120 64-214 3-122 (132)
16 3gt7_A Sensor protein; structu 99.9 1.6E-21 5.4E-26 150.6 17.4 125 64-217 7-131 (154)
17 1srr_A SPO0F, sporulation resp 99.9 8.7E-22 3E-26 145.9 15.1 118 65-213 4-121 (124)
18 3eod_A Protein HNR; response r 99.9 9.9E-22 3.4E-26 146.8 15.2 122 62-214 5-127 (130)
19 3hv2_A Response regulator/HD d 99.9 1.8E-21 6.3E-26 149.8 15.9 123 63-216 13-136 (153)
20 3n0r_A Response regulator; sig 99.9 1.6E-22 5.3E-27 173.0 10.7 119 64-216 160-280 (286)
21 3i42_A Response regulator rece 99.9 8.1E-22 2.8E-26 146.7 13.1 122 64-215 3-124 (127)
22 1jbe_A Chemotaxis protein CHEY 99.9 4.5E-21 1.5E-25 142.6 17.1 122 63-213 3-125 (128)
23 4e7p_A Response regulator; DNA 99.9 4E-21 1.4E-25 147.4 16.9 123 62-215 18-142 (150)
24 1xhf_A DYE resistance, aerobic 99.9 4.3E-21 1.5E-25 141.8 16.4 119 64-214 3-121 (123)
25 2ayx_A Sensor kinase protein R 99.9 2.3E-21 7.7E-26 162.6 16.5 122 62-214 127-248 (254)
26 3kto_A Response regulator rece 99.9 7E-22 2.4E-26 149.2 12.1 123 64-217 6-130 (136)
27 1tmy_A CHEY protein, TMY; chem 99.9 2.6E-21 8.8E-26 142.4 14.8 116 65-211 3-119 (120)
28 3jte_A Response regulator rece 99.9 5.2E-21 1.8E-25 145.1 16.9 125 64-217 3-127 (143)
29 4dad_A Putative pilus assembly 99.9 1.2E-21 4.2E-26 149.3 13.5 124 62-215 18-143 (146)
30 3lua_A Response regulator rece 99.9 9.4E-22 3.2E-26 148.9 12.6 126 64-218 4-132 (140)
31 1mvo_A PHOP response regulator 99.9 3.5E-21 1.2E-25 144.7 15.7 122 65-217 4-125 (136)
32 3f6c_A Positive transcription 99.9 1.6E-21 5.5E-26 146.2 13.7 122 65-217 2-124 (134)
33 3b2n_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 144.7 15.6 119 65-214 4-124 (133)
34 1zgz_A Torcad operon transcrip 99.9 7.7E-21 2.6E-25 140.2 17.0 117 65-213 3-119 (122)
35 1mb3_A Cell division response 99.9 2.3E-21 7.8E-26 143.3 14.1 120 65-213 2-121 (124)
36 2qzj_A Two-component response 99.9 2.7E-21 9.3E-26 146.3 14.7 123 64-218 4-126 (136)
37 3luf_A Two-component system re 99.9 2.5E-21 8.4E-26 163.0 16.0 127 63-217 123-249 (259)
38 3grc_A Sensor protein, kinase; 99.9 1.4E-21 4.7E-26 147.8 13.0 127 63-218 5-132 (140)
39 3hdv_A Response regulator; PSI 99.9 6.8E-21 2.3E-25 143.3 16.1 125 64-217 7-131 (136)
40 1i3c_A Response regulator RCP1 99.9 1.1E-20 3.7E-25 144.9 17.5 130 63-214 7-138 (149)
41 3hdg_A Uncharacterized protein 99.9 2.9E-21 1E-25 145.5 14.0 123 64-217 7-129 (137)
42 1p6q_A CHEY2; chemotaxis, sign 99.9 4.3E-21 1.5E-25 142.9 14.6 121 64-213 6-127 (129)
43 1k68_A Phytochrome response re 99.9 1.1E-20 3.7E-25 141.9 16.9 131 64-216 2-134 (140)
44 3kht_A Response regulator; PSI 99.9 5.8E-21 2E-25 145.2 15.5 126 63-217 4-132 (144)
45 3c3m_A Response regulator rece 99.9 6.2E-21 2.1E-25 144.4 15.3 122 65-215 4-125 (138)
46 2a9o_A Response regulator; ess 99.9 6.2E-21 2.1E-25 140.0 14.9 117 65-213 2-118 (120)
47 3ilh_A Two component response 99.9 1.1E-20 3.7E-25 143.3 16.4 133 63-217 8-143 (146)
48 3snk_A Response regulator CHEY 99.9 4.6E-22 1.6E-26 149.9 8.4 120 63-213 13-133 (135)
49 3h5i_A Response regulator/sens 99.9 3.4E-21 1.2E-25 146.1 13.1 123 63-217 4-128 (140)
50 2rjn_A Response regulator rece 99.9 7.1E-21 2.4E-25 146.5 14.9 124 62-216 5-129 (154)
51 3nhm_A Response regulator; pro 99.9 6.6E-21 2.3E-25 142.6 14.2 123 64-217 4-126 (133)
52 3heb_A Response regulator rece 99.9 1.5E-20 5.2E-25 144.3 16.5 132 64-215 4-137 (152)
53 3cfy_A Putative LUXO repressor 99.9 5.2E-21 1.8E-25 144.9 13.7 119 65-214 5-123 (137)
54 3cnb_A DNA-binding response re 99.9 2.4E-20 8.1E-25 140.9 17.2 126 63-217 7-134 (143)
55 1dz3_A Stage 0 sporulation pro 99.9 8.5E-21 2.9E-25 141.8 14.3 120 65-214 3-124 (130)
56 1dcf_A ETR1 protein; beta-alph 99.9 1.7E-20 5.6E-25 141.3 15.8 126 62-214 5-130 (136)
57 1k66_A Phytochrome response re 99.9 1.9E-20 6.6E-25 142.2 16.4 131 63-216 5-141 (149)
58 3eul_A Possible nitrate/nitrit 99.9 2.2E-20 7.6E-25 143.4 16.6 124 62-216 13-138 (152)
59 1qkk_A DCTD, C4-dicarboxylate 99.9 9.1E-21 3.1E-25 146.0 14.2 122 64-216 3-124 (155)
60 1zh2_A KDP operon transcriptio 99.9 1.1E-20 3.9E-25 138.7 14.0 118 65-214 2-119 (121)
61 2zay_A Response regulator rece 99.9 8.9E-21 3E-25 144.5 13.8 128 62-218 6-133 (147)
62 3dzd_A Transcriptional regulat 99.9 4.2E-21 1.4E-25 169.6 13.2 120 66-216 2-121 (368)
63 3kcn_A Adenylate cyclase homol 99.9 1.7E-20 5.9E-25 144.0 15.0 123 64-217 4-127 (151)
64 2qxy_A Response regulator; reg 99.9 2.2E-20 7.4E-25 141.5 15.3 122 64-217 4-125 (142)
65 3q9s_A DNA-binding response re 99.9 8.7E-21 3E-25 158.5 14.3 122 62-215 35-156 (249)
66 2qr3_A Two-component system re 99.9 2.1E-20 7.3E-25 140.9 14.8 123 64-217 3-130 (140)
67 3lte_A Response regulator; str 99.8 3.2E-20 1.1E-24 138.7 15.6 124 63-216 5-128 (132)
68 1yio_A Response regulatory pro 99.8 1.1E-20 3.6E-25 152.6 13.8 120 64-214 4-123 (208)
69 3cg0_A Response regulator rece 99.8 3.6E-20 1.2E-24 139.6 15.1 123 63-217 8-132 (140)
70 3a10_A Response regulator; pho 99.8 1.6E-20 5.5E-25 137.3 12.7 114 65-211 2-115 (116)
71 2jba_A Phosphate regulon trans 99.8 4.3E-21 1.5E-25 142.4 9.8 121 65-214 3-123 (127)
72 1a04_A Nitrate/nitrite respons 99.8 4.3E-20 1.5E-24 149.9 16.2 121 64-215 5-127 (215)
73 3cg4_A Response regulator rece 99.8 1.5E-20 5.2E-25 142.2 12.5 125 63-216 6-130 (142)
74 3n53_A Response regulator rece 99.8 6.7E-21 2.3E-25 144.2 10.4 123 64-216 3-125 (140)
75 3cz5_A Two-component response 99.8 7E-20 2.4E-24 140.7 16.1 123 63-216 4-128 (153)
76 3eq2_A Probable two-component 99.8 8.6E-21 3E-25 168.3 12.1 120 64-214 5-125 (394)
77 2qsj_A DNA-binding response re 99.8 4.3E-20 1.5E-24 141.9 14.2 123 64-217 3-128 (154)
78 1kgs_A DRRD, DNA binding respo 99.8 4.3E-20 1.5E-24 150.6 15.0 120 65-215 3-122 (225)
79 2jk1_A HUPR, hydrogenase trans 99.8 5.6E-20 1.9E-24 139.0 14.6 119 65-215 2-121 (139)
80 3cu5_A Two component transcrip 99.8 3.2E-20 1.1E-24 141.2 12.8 119 65-214 3-124 (141)
81 1s8n_A Putative antiterminator 99.8 4.4E-20 1.5E-24 149.0 13.2 118 65-214 14-132 (205)
82 2gkg_A Response regulator homo 99.8 8.6E-20 3E-24 134.7 13.2 120 64-213 5-125 (127)
83 3eqz_A Response regulator; str 99.8 2E-20 6.9E-25 140.0 9.8 122 64-217 3-129 (135)
84 1ys7_A Transcriptional regulat 99.8 5.3E-20 1.8E-24 150.9 13.2 122 63-215 6-127 (233)
85 1ny5_A Transcriptional regulat 99.8 7.8E-20 2.7E-24 162.5 14.9 119 65-214 1-119 (387)
86 2qvg_A Two component response 99.8 2.3E-19 7.8E-24 135.8 15.4 129 63-214 6-136 (143)
87 2rdm_A Response regulator rece 99.8 3.4E-19 1.2E-23 132.9 16.0 123 62-217 3-127 (132)
88 1w25_A Stalked-cell differenti 99.8 7.3E-20 2.5E-24 165.0 14.4 121 65-214 2-122 (459)
89 2pln_A HP1043, response regula 99.8 5.3E-19 1.8E-23 133.2 15.6 117 62-214 16-134 (137)
90 3c97_A Signal transduction his 99.8 2.2E-19 7.6E-24 135.9 12.9 123 64-215 10-132 (140)
91 2qv0_A Protein MRKE; structura 99.8 5.2E-19 1.8E-23 134.0 14.8 122 63-217 8-131 (143)
92 2gwr_A DNA-binding response re 99.8 2.6E-19 9E-24 147.8 13.8 118 65-214 6-123 (238)
93 2oqr_A Sensory transduction pr 99.8 3.1E-19 1.1E-23 146.1 13.4 118 65-214 5-122 (230)
94 3kyj_B CHEY6 protein, putative 99.8 2.6E-19 8.9E-24 136.3 12.1 114 62-207 11-129 (145)
95 2j48_A Two-component sensor ki 99.8 3E-19 1E-23 129.7 11.4 116 65-212 2-117 (119)
96 3t8y_A CHEB, chemotaxis respon 99.8 9.5E-19 3.3E-23 136.5 15.0 122 63-216 24-158 (164)
97 3c3w_A Two component transcrip 99.8 8.4E-20 2.9E-24 149.9 7.7 120 65-215 2-123 (225)
98 1dc7_A NTRC, nitrogen regulati 99.8 6.4E-21 2.2E-25 140.5 0.9 120 64-214 3-122 (124)
99 2b4a_A BH3024; flavodoxin-like 99.8 2E-19 6.7E-24 135.7 8.9 118 62-214 13-132 (138)
100 3sy8_A ROCR; TIM barrel phosph 99.8 3.8E-19 1.3E-23 158.4 12.0 121 64-215 3-130 (400)
101 3klo_A Transcriptional regulat 99.8 1.7E-19 6E-24 147.7 8.0 124 63-216 6-132 (225)
102 3bre_A Probable two-component 99.8 4.7E-19 1.6E-23 154.5 10.8 119 64-211 18-137 (358)
103 1qo0_D AMIR; binding protein, 99.8 9.3E-19 3.2E-23 140.2 11.1 117 62-214 10-126 (196)
104 1p2f_A Response regulator; DRR 99.8 2.2E-18 7.5E-23 140.2 13.4 117 65-215 3-119 (220)
105 2hqr_A Putative transcriptiona 99.8 5.8E-18 2E-22 138.0 14.3 115 65-214 1-116 (223)
106 1a2o_A CHEB methylesterase; ba 99.7 3.5E-17 1.2E-21 143.5 14.8 119 64-214 3-134 (349)
107 3luf_A Two-component system re 99.7 1.3E-17 4.5E-22 140.1 10.2 103 65-201 5-108 (259)
108 2vyc_A Biodegradative arginine 99.7 2.1E-17 7.2E-22 158.1 9.5 119 65-214 1-134 (755)
109 1w25_A Stalked-cell differenti 99.2 2.1E-10 7.2E-15 103.0 16.2 121 63-214 151-271 (459)
110 3cwo_X Beta/alpha-barrel prote 99.2 1.2E-11 4.1E-16 100.8 5.6 95 89-214 6-102 (237)
111 2ayx_A Sensor kinase protein R 97.9 3.4E-05 1.2E-09 63.7 8.4 98 61-212 8-105 (254)
112 3n75_A LDC, lysine decarboxyla 97.7 5.7E-05 1.9E-09 71.7 7.1 104 76-212 18-122 (715)
113 3q7r_A Transcriptional regulat 97.5 0.0014 4.9E-08 46.2 10.2 109 63-214 11-119 (121)
114 2yxb_A Coenzyme B12-dependent 96.8 0.027 9.4E-07 43.2 12.2 121 63-214 17-146 (161)
115 3cwo_X Beta/alpha-barrel prote 96.1 0.021 7.3E-07 45.3 8.3 71 133-208 144-221 (237)
116 1ccw_A Protein (glutamate muta 95.7 0.24 8.1E-06 36.7 11.8 111 71-212 14-135 (137)
117 1wv2_A Thiazole moeity, thiazo 94.0 0.56 1.9E-05 38.8 10.6 101 78-211 125-236 (265)
118 1b3q_A Protein (chemotaxis pro 92.4 0.056 1.9E-06 47.1 2.3 85 1-86 215-309 (379)
119 2btz_A Pyruvate dehydrogenase 92.0 0.054 1.9E-06 47.2 1.8 32 1-32 317-349 (394)
120 2i2x_B MTAC, methyltransferase 91.9 2.6 8.9E-05 34.5 11.9 113 64-213 123-244 (258)
121 2e0a_A Pyruvate dehydrogenase 91.6 0.058 2E-06 47.1 1.5 32 1-32 317-349 (394)
122 1y8o_A [pyruvate dehydrogenase 91.5 0.059 2E-06 47.5 1.5 32 1-32 341-373 (419)
123 3q58_A N-acetylmannosamine-6-p 91.4 2 7E-05 34.5 10.6 99 64-196 101-210 (229)
124 2q8g_A [pyruvate dehydrogenase 91.4 0.062 2.1E-06 47.1 1.5 32 1-32 330-362 (407)
125 1req_A Methylmalonyl-COA mutas 91.0 3.8 0.00013 38.7 13.2 119 63-212 595-722 (727)
126 2xij_A Methylmalonyl-COA mutas 90.8 5.1 0.00018 38.1 13.9 119 63-212 603-730 (762)
127 3igs_A N-acetylmannosamine-6-p 90.4 3 0.0001 33.6 10.6 88 74-195 115-209 (232)
128 1mu5_A Type II DNA topoisomera 89.7 0.018 6.1E-07 52.0 -3.6 28 1-28 113-142 (471)
129 1y80_A Predicted cobalamin bin 89.1 3.6 0.00012 32.3 10.1 101 64-196 88-197 (210)
130 2htm_A Thiazole biosynthesis p 88.8 3.4 0.00011 34.2 9.7 72 133-211 145-227 (268)
131 3sl2_A Sensor histidine kinase 88.2 0.19 6.4E-06 38.1 1.7 28 1-28 119-146 (177)
132 3ezx_A MMCP 1, monomethylamine 88.0 3.8 0.00013 32.6 9.5 100 65-196 93-203 (215)
133 3o63_A Probable thiamine-phosp 86.6 5.2 0.00018 32.5 9.7 75 132-212 154-240 (243)
134 2bfw_A GLGA glycogen synthase; 86.3 8.8 0.0003 28.8 11.2 111 64-217 70-185 (200)
135 3fkq_A NTRC-like two-domain pr 86.0 9.7 0.00033 32.5 11.7 105 62-211 19-126 (373)
136 3kp1_A D-ornithine aminomutase 85.6 11 0.00037 35.2 12.0 123 63-217 601-739 (763)
137 1xrs_B D-lysine 5,6-aminomutas 85.5 14 0.00048 30.4 12.7 117 64-212 120-257 (262)
138 2gek_A Phosphatidylinositol ma 85.4 5.2 0.00018 33.6 9.6 68 134-214 283-350 (406)
139 3f4w_A Putative hexulose 6 pho 84.7 12 0.00041 28.9 11.0 73 133-212 127-208 (211)
140 3l9w_A Glutathione-regulated p 83.1 9.8 0.00034 33.3 10.5 117 64-196 4-122 (413)
141 3rht_A (gatase1)-like protein; 83.1 0.92 3.1E-05 37.4 3.6 33 65-97 5-39 (259)
142 2ekc_A AQ_1548, tryptophan syn 82.9 7.5 0.00026 31.7 9.2 74 132-211 43-144 (262)
143 1r8j_A KAIA; circadian clock p 82.8 11 0.00037 31.2 9.7 82 63-176 8-90 (289)
144 1yad_A Regulatory protein TENI 81.6 13 0.00044 29.1 9.9 72 133-212 130-213 (221)
145 2xci_A KDO-transferase, 3-deox 81.4 4.7 0.00016 34.4 7.7 54 166-223 301-355 (374)
146 3fro_A GLGA glycogen synthase; 81.0 24 0.00081 29.7 12.5 70 133-217 330-400 (439)
147 3fwz_A Inner membrane protein 80.0 14 0.00049 26.5 10.1 115 65-195 8-124 (140)
148 2lci_A Protein OR36; structura 78.9 7.5 0.00026 26.8 6.5 45 66-110 79-123 (134)
149 3qja_A IGPS, indole-3-glycerol 78.7 26 0.00089 28.8 11.3 102 76-208 150-259 (272)
150 2iw1_A Lipopolysaccharide core 77.1 13 0.00044 30.7 9.0 68 134-215 271-339 (374)
151 3okp_A GDP-mannose-dependent a 76.8 9.6 0.00033 31.7 8.2 67 134-214 273-345 (394)
152 3l4e_A Uncharacterized peptida 76.3 14 0.00048 29.0 8.5 81 63-174 26-120 (206)
153 3llv_A Exopolyphosphatase-rela 75.8 19 0.00064 25.6 10.7 114 65-195 7-122 (141)
154 3c48_A Predicted glycosyltrans 75.4 27 0.00091 29.6 10.8 68 134-215 326-393 (438)
155 4dzz_A Plasmid partitioning pr 75.0 16 0.00055 27.6 8.4 13 63-75 29-41 (206)
156 1geq_A Tryptophan synthase alp 75.0 10 0.00035 30.2 7.5 63 134-203 32-122 (248)
157 2f9f_A First mannosyl transfer 74.4 22 0.00074 26.3 8.9 67 134-215 98-164 (177)
158 2fli_A Ribulose-phosphate 3-ep 74.4 20 0.00068 27.8 9.0 75 132-209 130-216 (220)
159 1qop_A Tryptophan synthase alp 74.4 12 0.00042 30.5 7.9 73 132-210 43-143 (268)
160 3qhp_A Type 1 capsular polysac 73.5 17 0.00059 26.2 8.0 109 64-216 32-143 (166)
161 2xxa_A Signal recognition part 73.2 18 0.00062 31.8 9.2 31 64-94 129-162 (433)
162 3ovp_A Ribulose-phosphate 3-ep 73.1 10 0.00034 30.4 6.9 73 133-212 134-218 (228)
163 2l69_A Rossmann 2X3 fold prote 73.0 20 0.00069 24.7 10.0 41 67-107 5-45 (134)
164 1j8m_F SRP54, signal recogniti 72.5 19 0.00066 29.8 8.8 32 63-94 125-159 (297)
165 1h1y_A D-ribulose-5-phosphate 72.0 23 0.00079 27.9 8.9 73 133-212 138-222 (228)
166 3qz6_A HPCH/HPAI aldolase; str 71.9 38 0.0013 27.5 11.3 75 131-210 35-110 (261)
167 3s83_A Ggdef family protein; s 71.1 12 0.00039 30.0 7.0 102 78-209 142-254 (259)
168 2jjm_A Glycosyl transferase, g 70.9 16 0.00055 30.6 8.2 135 64-214 211-351 (394)
169 2qzs_A Glycogen synthase; glyc 70.4 50 0.0017 28.4 11.5 64 134-211 367-439 (485)
170 1xm3_A Thiazole biosynthesis p 69.9 9.6 0.00033 31.1 6.3 41 148-195 166-206 (264)
171 4e38_A Keto-hydroxyglutarate-a 69.7 41 0.0014 26.9 11.2 97 80-208 27-124 (232)
172 2d00_A V-type ATP synthase sub 68.7 27 0.00093 24.5 10.4 80 63-176 2-81 (109)
173 1rzu_A Glycogen synthase 1; gl 68.7 56 0.0019 28.1 11.6 64 134-211 366-438 (485)
174 3ffs_A Inosine-5-monophosphate 68.3 60 0.002 28.2 12.9 101 64-194 156-273 (400)
175 3vnd_A TSA, tryptophan synthas 68.1 8 0.00027 31.9 5.3 44 166-209 94-143 (267)
176 1geq_A Tryptophan synthase alp 67.7 21 0.00071 28.3 7.8 41 149-196 180-220 (248)
177 4e5v_A Putative THUA-like prot 67.2 6.9 0.00023 32.5 4.8 35 63-97 3-43 (281)
178 2kx7_A Sensor-like histidine k 66.8 11 0.00036 27.0 5.0 96 61-214 4-100 (117)
179 4fo4_A Inosine 5'-monophosphat 66.3 52 0.0018 28.2 10.4 44 148-195 196-239 (366)
180 2tps_A Protein (thiamin phosph 65.6 45 0.0015 25.8 9.3 55 133-194 136-198 (227)
181 1xi3_A Thiamine phosphate pyro 64.6 45 0.0015 25.4 9.8 54 133-194 128-188 (215)
182 3bul_A Methionine synthase; tr 63.6 33 0.0011 31.5 9.0 99 64-195 98-210 (579)
183 2v82_A 2-dehydro-3-deoxy-6-pho 63.4 23 0.00078 27.4 7.1 53 133-195 121-175 (212)
184 2r60_A Glycosyl transferase, g 63.3 69 0.0024 27.7 11.0 101 77-214 321-425 (499)
185 3nav_A Tryptophan synthase alp 63.0 12 0.00042 30.8 5.6 53 149-207 85-143 (271)
186 3inp_A D-ribulose-phosphate 3- 62.6 18 0.00063 29.3 6.5 76 133-211 156-243 (246)
187 1qdl_B Protein (anthranilate s 62.5 4.2 0.00014 31.4 2.5 34 65-98 1-35 (195)
188 2z6i_A Trans-2-enoyl-ACP reduc 62.2 62 0.0021 27.0 10.0 55 133-194 130-189 (332)
189 1tqx_A D-ribulose-5-phosphate 62.0 58 0.002 25.9 9.4 72 133-211 138-221 (227)
190 3tsm_A IGPS, indole-3-glycerol 61.9 65 0.0022 26.4 12.0 103 76-212 157-267 (272)
191 2l69_A Rossmann 2X3 fold prote 60.9 37 0.0013 23.3 7.3 49 62-110 75-123 (134)
192 3bo9_A Putative nitroalkan dio 60.8 61 0.0021 27.1 9.7 55 133-194 144-203 (326)
193 3lab_A Putative KDPG (2-keto-3 60.4 62 0.0021 25.7 9.8 86 90-207 17-102 (217)
194 3e8x_A Putative NAD-dependent 60.1 13 0.00046 28.9 5.2 78 60-144 17-95 (236)
195 1ujp_A Tryptophan synthase alp 59.6 19 0.00065 29.6 6.1 72 131-210 41-140 (271)
196 4es6_A Uroporphyrinogen-III sy 59.5 64 0.0022 25.5 10.4 112 61-209 130-252 (254)
197 3o07_A Pyridoxine biosynthesis 59.5 11 0.00038 31.3 4.6 63 148-217 186-255 (291)
198 3dm5_A SRP54, signal recogniti 59.3 63 0.0022 28.5 9.8 11 132-142 181-191 (443)
199 3dr5_A Putative O-methyltransf 59.2 14 0.00049 28.9 5.2 66 64-156 81-150 (221)
200 2v5j_A 2,4-dihydroxyhept-2-ENE 58.8 75 0.0026 26.1 13.7 74 131-209 58-132 (287)
201 1eep_A Inosine 5'-monophosphat 58.3 89 0.003 26.8 11.0 44 148-195 241-284 (404)
202 2oo3_A Protein involved in cat 58.1 34 0.0012 28.4 7.4 70 64-157 113-184 (283)
203 2w6r_A Imidazole glycerol phos 56.5 50 0.0017 26.3 8.2 40 149-195 189-228 (266)
204 3l4b_C TRKA K+ channel protien 56.2 52 0.0018 25.2 8.0 115 66-195 2-118 (218)
205 2p9j_A Hypothetical protein AQ 56.0 53 0.0018 23.5 9.6 47 150-204 43-89 (162)
206 4adt_A Pyridoxine biosynthetic 55.6 46 0.0016 27.7 7.9 61 149-216 196-263 (297)
207 1req_B Methylmalonyl-COA mutas 55.1 26 0.00091 32.5 6.8 102 75-211 525-633 (637)
208 1vzw_A Phosphoribosyl isomeras 55.1 39 0.0013 26.6 7.3 66 134-206 160-238 (244)
209 1rpx_A Protein (ribulose-phosp 54.6 27 0.00091 27.4 6.1 61 132-195 139-206 (230)
210 2pyy_A Ionotropic glutamate re 54.5 47 0.0016 24.6 7.4 52 60-141 108-159 (228)
211 2iuy_A Avigt4, glycosyltransfe 54.5 29 0.001 28.3 6.6 65 134-212 232-307 (342)
212 1lst_A Lysine, arginine, ornit 54.0 37 0.0013 25.6 6.8 55 61-141 108-162 (239)
213 3iwt_A 178AA long hypothetical 53.0 53 0.0018 24.6 7.4 28 75-102 40-70 (178)
214 3oy2_A Glycosyltransferase B73 51.6 51 0.0018 27.5 7.9 67 134-215 274-357 (413)
215 3kl4_A SRP54, signal recogniti 51.2 1.3E+02 0.0043 26.4 10.7 12 131-142 177-188 (433)
216 4h08_A Putative hydrolase; GDS 50.6 74 0.0025 23.6 10.1 40 131-176 72-120 (200)
217 1qv9_A F420-dependent methylen 50.6 34 0.0012 27.8 5.9 60 131-197 62-121 (283)
218 1ka9_F Imidazole glycerol phos 50.5 48 0.0016 26.1 7.1 52 149-207 185-242 (252)
219 3ctl_A D-allulose-6-phosphate 50.5 39 0.0013 26.9 6.4 77 133-212 128-218 (231)
220 3tr6_A O-methyltransferase; ce 50.4 73 0.0025 24.2 8.0 70 64-156 89-161 (225)
221 3duw_A OMT, O-methyltransferas 50.2 81 0.0028 23.9 8.3 69 64-156 83-154 (223)
222 4gud_A Imidazole glycerol phos 50.2 20 0.0007 27.6 4.7 34 66-99 4-37 (211)
223 2gjl_A Hypothetical protein PA 50.1 1.1E+02 0.0037 25.3 11.6 57 132-195 137-200 (328)
224 1rd5_A Tryptophan synthase alp 49.6 45 0.0015 26.7 6.8 42 148-196 189-230 (262)
225 3beo_A UDP-N-acetylglucosamine 49.6 1E+02 0.0036 25.0 9.6 61 133-213 282-342 (375)
226 2vws_A YFAU, 2-keto-3-deoxy su 49.5 1E+02 0.0035 24.9 13.9 74 131-209 37-111 (267)
227 3u81_A Catechol O-methyltransf 49.4 34 0.0012 26.3 5.9 60 64-144 83-145 (221)
228 3jy6_A Transcriptional regulat 49.4 92 0.0031 24.3 9.8 53 133-192 85-152 (276)
229 3c3y_A Pfomt, O-methyltransfer 49.2 58 0.002 25.4 7.4 71 64-156 95-168 (237)
230 2iuy_A Avigt4, glycosyltransfe 49.2 50 0.0017 26.8 7.2 34 64-97 3-56 (342)
231 4gx0_A TRKA domain protein; me 49.2 57 0.0019 29.2 8.1 115 64-195 127-243 (565)
232 3i1j_A Oxidoreductase, short c 49.2 89 0.003 24.1 9.4 90 62-175 12-102 (247)
233 3tqv_A Nicotinate-nucleotide p 49.1 92 0.0031 25.8 8.6 69 134-210 169-239 (287)
234 3cbg_A O-methyltransferase; cy 48.9 71 0.0024 24.7 7.8 68 64-156 97-169 (232)
235 1vgv_A UDP-N-acetylglucosamine 48.9 48 0.0016 27.4 7.1 42 166-213 300-342 (384)
236 3sho_A Transcriptional regulat 48.6 80 0.0027 23.4 12.3 83 66-181 41-128 (187)
237 3re1_A Uroporphyrinogen-III sy 48.4 39 0.0013 27.2 6.3 115 61-212 138-263 (269)
238 1thf_D HISF protein; thermophI 48.3 83 0.0028 24.7 8.2 68 133-207 164-241 (253)
239 1ep3_A Dihydroorotate dehydrog 48.3 1.1E+02 0.0037 24.8 11.5 60 149-215 230-295 (311)
240 3gjy_A Spermidine synthase; AP 48.1 40 0.0014 28.3 6.4 27 131-157 157-188 (317)
241 1ka9_F Imidazole glycerol phos 47.8 74 0.0025 25.0 7.8 53 136-195 48-103 (252)
242 2hmt_A YUAA protein; RCK, KTN, 47.5 67 0.0023 22.2 7.0 115 64-194 6-122 (144)
243 1wl8_A GMP synthase [glutamine 47.5 21 0.00071 27.1 4.2 33 66-98 2-34 (189)
244 3tfw_A Putative O-methyltransf 47.3 1E+02 0.0034 24.2 9.3 67 64-156 88-157 (248)
245 3l0g_A Nicotinate-nucleotide p 47.2 37 0.0013 28.4 5.9 66 91-193 211-276 (300)
246 1jcn_A Inosine monophosphate d 47.1 1.4E+02 0.0047 26.5 10.2 27 167-193 358-384 (514)
247 2fpo_A Methylase YHHF; structu 46.8 80 0.0027 23.8 7.7 66 66-157 79-146 (202)
248 3s2u_A UDP-N-acetylglucosamine 46.7 83 0.0029 26.3 8.4 50 167-216 272-327 (365)
249 3snr_A Extracellular ligand-bi 46.1 96 0.0033 25.0 8.5 44 132-183 189-232 (362)
250 3f9i_A 3-oxoacyl-[acyl-carrier 46.0 51 0.0018 25.6 6.6 45 61-105 11-55 (249)
251 3p9n_A Possible methyltransfer 46.0 77 0.0026 23.4 7.3 67 65-156 68-138 (189)
252 1fy2_A Aspartyl dipeptidase; s 45.7 55 0.0019 25.8 6.6 64 63-157 30-99 (229)
253 3s28_A Sucrose synthase 1; gly 45.6 1.7E+02 0.0058 27.9 11.0 64 134-211 665-728 (816)
254 4fxs_A Inosine-5'-monophosphat 45.5 65 0.0022 28.7 7.7 57 132-195 242-299 (496)
255 3hp4_A GDSL-esterase; psychrot 45.4 78 0.0027 22.9 7.2 31 64-94 2-42 (185)
256 3h2s_A Putative NADH-flavin re 45.4 46 0.0016 25.2 6.1 38 65-102 1-38 (224)
257 3ntv_A MW1564 protein; rossman 45.3 54 0.0018 25.4 6.5 65 64-156 95-163 (232)
258 3hm2_A Precorrin-6Y C5,15-meth 45.2 82 0.0028 22.6 7.3 64 64-156 49-114 (178)
259 1i1q_B Anthranilate synthase c 44.9 37 0.0013 25.7 5.4 32 66-97 2-33 (192)
260 3qk7_A Transcriptional regulat 44.8 1.1E+02 0.0039 24.1 8.9 20 194-213 165-184 (294)
261 1z0s_A Probable inorganic poly 44.4 24 0.00081 29.2 4.3 94 64-212 29-122 (278)
262 3ek2_A Enoyl-(acyl-carrier-pro 44.3 60 0.0021 25.5 6.8 36 61-96 11-48 (271)
263 3g8r_A Probable spore coat pol 44.1 1.5E+02 0.0051 25.2 9.5 79 73-186 76-154 (350)
264 2vpt_A Lipolytic enzyme; ester 44.1 73 0.0025 24.1 7.1 31 64-94 5-45 (215)
265 2w6r_A Imidazole glycerol phos 44.1 46 0.0016 26.5 6.0 54 136-196 47-103 (266)
266 1vl8_A Gluconate 5-dehydrogena 43.9 1.2E+02 0.004 24.0 8.9 43 60-102 17-59 (267)
267 2vsy_A XCC0866; transferase, g 43.9 1.3E+02 0.0046 26.3 9.6 68 134-214 454-523 (568)
268 2x6q_A Trehalose-synthase TRET 43.7 1.4E+02 0.0048 24.8 12.3 65 134-214 316-380 (416)
269 3bw2_A 2-nitropropane dioxygen 43.5 1.5E+02 0.0051 25.0 10.6 40 148-194 196-235 (369)
270 1uir_A Polyamine aminopropyltr 43.3 1.1E+02 0.0036 25.3 8.3 68 64-157 101-183 (314)
271 2avd_A Catechol-O-methyltransf 43.2 1.1E+02 0.0036 23.3 8.9 70 64-156 94-166 (229)
272 1k1e_A Deoxy-D-mannose-octulos 42.9 97 0.0033 22.7 10.1 53 149-209 41-93 (180)
273 2gk3_A Putative cytoplasmic pr 42.9 19 0.00064 29.1 3.5 18 78-95 43-60 (256)
274 3cvo_A Methyltransferase-like 42.8 33 0.0011 26.8 4.8 25 65-89 52-76 (202)
275 1rd5_A Tryptophan synthase alp 42.8 63 0.0021 25.8 6.7 69 132-208 44-137 (262)
276 2i7c_A Spermidine synthase; tr 42.6 1E+02 0.0035 24.8 8.1 67 65-157 103-180 (283)
277 1iy9_A Spermidine synthase; ro 42.4 84 0.0029 25.3 7.5 67 65-157 100-177 (275)
278 1gox_A (S)-2-hydroxy-acid oxid 42.3 1.3E+02 0.0043 25.6 8.8 88 78-196 215-309 (370)
279 3hcw_A Maltose operon transcri 42.2 1.1E+02 0.0039 24.1 8.2 19 79-97 33-51 (295)
280 3lkb_A Probable branched-chain 41.9 1.5E+02 0.005 24.5 9.8 44 131-182 196-239 (392)
281 3k4h_A Putative transcriptiona 41.9 1.2E+02 0.0042 23.6 9.0 74 133-213 92-189 (292)
282 2v25_A Major cell-binding fact 41.5 81 0.0028 23.9 7.0 55 61-141 145-201 (259)
283 3lyl_A 3-oxoacyl-(acyl-carrier 41.3 1.2E+02 0.0041 23.3 9.6 43 63-105 4-46 (247)
284 3r2g_A Inosine 5'-monophosphat 41.3 1.3E+02 0.0044 25.7 8.6 57 132-195 111-168 (361)
285 3td9_A Branched chain amino ac 41.3 1.4E+02 0.0049 24.2 10.9 87 63-182 148-245 (366)
286 1f0k_A MURG, UDP-N-acetylgluco 41.1 50 0.0017 27.0 6.0 62 134-210 255-322 (364)
287 1sui_A Caffeoyl-COA O-methyltr 40.8 1.3E+02 0.0044 23.6 9.4 71 64-156 104-177 (247)
288 1qop_A Tryptophan synthase alp 40.7 1.3E+02 0.0044 24.2 8.3 41 149-196 194-234 (268)
289 1ujp_A Tryptophan synthase alp 40.4 89 0.003 25.4 7.2 55 149-212 191-254 (271)
290 3ajx_A 3-hexulose-6-phosphate 40.1 47 0.0016 25.3 5.3 89 94-213 9-101 (207)
291 3ceu_A Thiamine phosphate pyro 40.0 61 0.0021 25.0 6.0 54 133-193 107-169 (210)
292 2f6u_A GGGPS, (S)-3-O-geranylg 39.8 37 0.0013 27.2 4.7 62 95-195 20-83 (234)
293 1qpo_A Quinolinate acid phosph 39.7 1.6E+02 0.0054 24.2 8.9 54 133-194 214-267 (284)
294 3pfn_A NAD kinase; structural 39.6 1.8E+02 0.0061 24.9 10.2 123 60-214 34-165 (365)
295 3m6w_A RRNA methylase; rRNA me 39.5 67 0.0023 28.5 6.8 53 65-143 127-180 (464)
296 3usb_A Inosine-5'-monophosphat 39.4 2.1E+02 0.0071 25.5 12.0 44 148-195 344-387 (511)
297 3e3m_A Transcriptional regulat 39.3 1.3E+02 0.0044 24.7 8.3 20 77-96 89-108 (355)
298 3axs_A Probable N(2),N(2)-dime 39.3 42 0.0014 29.1 5.3 25 65-89 78-102 (392)
299 3l6u_A ABC-type sugar transpor 39.3 1.4E+02 0.0046 23.4 9.0 69 77-176 27-98 (293)
300 3aon_B V-type sodium ATPase su 39.3 98 0.0034 21.8 6.9 75 65-175 3-77 (115)
301 3o38_A Short chain dehydrogena 39.2 1.4E+02 0.0047 23.4 10.0 43 62-104 20-63 (266)
302 2r6o_A Putative diguanylate cy 39.1 40 0.0014 27.7 5.0 75 131-210 196-279 (294)
303 1v4v_A UDP-N-acetylglucosamine 39.1 1.6E+02 0.0054 24.1 11.0 43 166-213 292-334 (376)
304 3mn1_A Probable YRBI family ph 39.0 1.2E+02 0.004 22.6 7.6 52 151-210 54-105 (189)
305 3vk5_A MOEO5; TIM barrel, tran 38.9 1.1E+02 0.0037 25.4 7.4 58 134-197 200-257 (286)
306 2qfm_A Spermine synthase; sper 38.7 68 0.0023 27.6 6.4 68 65-155 212-296 (364)
307 3inp_A D-ribulose-phosphate 3- 38.6 90 0.0031 25.1 6.9 72 133-210 53-130 (246)
308 2yzr_A Pyridoxal biosynthesis 38.5 43 0.0015 28.4 5.0 60 148-214 228-294 (330)
309 1zgh_A Methionyl-tRNA formyltr 38.2 34 0.0011 28.0 4.3 44 62-105 28-74 (260)
310 3c6k_A Spermine synthase; sper 38.2 74 0.0025 27.5 6.6 57 65-144 229-295 (381)
311 3imf_A Short chain dehydrogena 38.1 1.4E+02 0.0049 23.3 8.7 44 62-105 4-47 (257)
312 3l0g_A Nicotinate-nucleotide p 38.0 1.1E+02 0.0038 25.5 7.4 53 150-210 196-248 (300)
313 1ii5_A SLR1257 protein; membra 37.8 1.2E+02 0.004 22.5 7.3 51 61-141 113-163 (233)
314 3gnn_A Nicotinate-nucleotide p 37.8 1.8E+02 0.006 24.2 9.8 65 92-193 214-278 (298)
315 4fzr_A SSFS6; structural genom 37.8 1.1E+02 0.0038 25.4 7.7 52 166-217 319-372 (398)
316 3c3p_A Methyltransferase; NP_9 37.5 1.3E+02 0.0043 22.6 7.5 64 64-156 81-147 (210)
317 3rot_A ABC sugar transporter, 37.3 1.5E+02 0.0052 23.3 9.0 69 77-176 22-95 (297)
318 2y88_A Phosphoribosyl isomeras 37.2 1.4E+02 0.0049 23.1 9.2 66 133-205 162-240 (244)
319 3tjr_A Short chain dehydrogena 37.1 1.6E+02 0.0056 23.7 9.4 44 62-105 29-72 (301)
320 3m4x_A NOL1/NOP2/SUN family pr 37.1 93 0.0032 27.4 7.3 52 65-142 131-184 (456)
321 2igt_A SAM dependent methyltra 36.8 1.3E+02 0.0044 25.1 7.9 54 65-141 176-233 (332)
322 3sy8_A ROCR; TIM barrel phosph 36.8 66 0.0022 27.4 6.2 131 74-210 242-392 (400)
323 4avf_A Inosine-5'-monophosphat 36.8 1.1E+02 0.0037 27.2 7.8 57 132-195 240-297 (490)
324 4e3z_A Putative oxidoreductase 36.7 1.5E+02 0.0052 23.2 8.3 42 64-105 26-68 (272)
325 2oyr_A UPF0341 protein YHIQ; a 36.5 1.1E+02 0.0039 24.5 7.3 22 64-85 110-131 (258)
326 2hnk_A SAM-dependent O-methylt 36.5 1.2E+02 0.0041 23.4 7.3 39 64-102 85-126 (239)
327 2ift_A Putative methylase HI07 36.5 64 0.0022 24.4 5.5 67 65-156 77-148 (201)
328 3r1i_A Short-chain type dehydr 36.3 1.6E+02 0.0054 23.4 8.2 44 61-104 29-72 (276)
329 1id1_A Putative potassium chan 36.2 1.2E+02 0.0039 21.6 9.6 118 64-194 3-123 (153)
330 2zbk_B Type 2 DNA topoisomeras 36.0 12 0.0004 34.0 1.3 28 1-28 112-141 (530)
331 3qiv_A Short-chain dehydrogena 35.8 1.5E+02 0.0051 22.9 9.2 44 62-105 7-50 (253)
332 3ezl_A Acetoacetyl-COA reducta 35.8 1.2E+02 0.004 23.6 7.2 34 62-95 11-44 (256)
333 2ov6_A V-type ATP synthase sub 35.6 1E+02 0.0035 21.0 5.9 53 65-143 1-54 (101)
334 4ibo_A Gluconate dehydrogenase 35.4 1.7E+02 0.0057 23.2 8.7 44 61-104 23-66 (271)
335 1h5y_A HISF; histidine biosynt 35.2 1.5E+02 0.0052 22.7 9.5 67 134-207 168-244 (253)
336 3e05_A Precorrin-6Y C5,15-meth 35.2 60 0.0021 24.3 5.2 24 132-157 107-130 (204)
337 2r8e_A 3-deoxy-D-manno-octulos 35.1 1.3E+02 0.0043 22.3 7.0 51 151-209 61-111 (188)
338 1nvm_A HOA, 4-hydroxy-2-oxoval 34.7 2E+02 0.0069 24.0 9.8 44 145-194 66-111 (345)
339 4ef8_A Dihydroorotate dehydrog 34.7 58 0.002 27.8 5.4 62 149-216 265-333 (354)
340 1tqj_A Ribulose-phosphate 3-ep 34.6 79 0.0027 24.9 5.9 71 133-211 30-109 (230)
341 3ucx_A Short chain dehydrogena 34.2 1.7E+02 0.0057 22.9 9.9 44 62-105 9-52 (264)
342 4iin_A 3-ketoacyl-acyl carrier 34.1 1.7E+02 0.0058 23.0 8.5 45 62-106 27-72 (271)
343 3ll7_A Putative methyltransfer 33.9 65 0.0022 28.1 5.7 40 64-103 115-158 (410)
344 8abp_A L-arabinose-binding pro 33.9 1.7E+02 0.0059 22.9 8.8 68 77-175 21-90 (306)
345 3h5l_A Putative branched-chain 33.8 2E+02 0.0068 24.0 8.8 85 65-181 165-260 (419)
346 3c85_A Putative glutathione-re 33.8 1.4E+02 0.0047 21.9 11.4 117 62-195 37-158 (183)
347 3gaf_A 7-alpha-hydroxysteroid 33.8 1.7E+02 0.0058 22.8 8.8 44 62-105 10-53 (256)
348 1y0e_A Putative N-acetylmannos 33.7 1.6E+02 0.0054 22.5 9.1 42 148-196 163-204 (223)
349 2rgy_A Transcriptional regulat 33.6 1.4E+02 0.0048 23.4 7.5 18 196-213 169-186 (290)
350 3rkr_A Short chain oxidoreduct 33.4 1.7E+02 0.0059 22.8 8.5 44 62-105 27-70 (262)
351 3abi_A Putative uncharacterize 33.4 2E+02 0.0067 24.0 8.6 41 62-104 14-54 (365)
352 3kke_A LACI family transcripti 33.3 1.7E+02 0.0058 23.1 8.0 17 194-210 170-186 (303)
353 2q5c_A NTRC family transcripti 33.3 1.6E+02 0.0055 22.5 12.6 134 64-214 4-142 (196)
354 3o74_A Fructose transport syst 33.3 1.6E+02 0.0056 22.5 8.1 75 133-214 82-177 (272)
355 3khj_A Inosine-5-monophosphate 33.2 2.2E+02 0.0076 24.1 13.1 43 148-194 192-234 (361)
356 3w01_A Heptaprenylglyceryl pho 33.0 41 0.0014 27.1 3.9 52 131-196 34-87 (235)
357 3ic5_A Putative saccharopine d 32.9 1.1E+02 0.0036 20.2 6.7 41 64-105 5-46 (118)
358 3gk3_A Acetoacetyl-COA reducta 32.7 1.8E+02 0.0061 22.8 8.3 42 62-103 23-65 (269)
359 2b2c_A Spermidine synthase; be 32.7 93 0.0032 25.8 6.3 22 65-86 133-154 (314)
360 3o26_A Salutaridine reductase; 32.3 1.9E+02 0.0063 22.9 9.8 37 62-98 10-46 (311)
361 1g5t_A COB(I)alamin adenosyltr 32.2 87 0.003 24.3 5.6 47 131-184 118-169 (196)
362 2pt6_A Spermidine synthase; tr 32.1 1.8E+02 0.0063 23.9 8.1 27 131-157 187-218 (321)
363 3kts_A Glycerol uptake operon 32.0 45 0.0015 25.9 3.9 55 131-196 125-179 (192)
364 4egf_A L-xylulose reductase; s 31.9 1.9E+02 0.0063 22.7 9.4 42 62-103 18-59 (266)
365 2r6z_A UPF0341 protein in RSP 31.5 80 0.0027 25.3 5.5 60 64-146 105-174 (258)
366 3ipc_A ABC transporter, substr 31.4 1.6E+02 0.0056 23.7 7.7 44 131-182 191-234 (356)
367 3oix_A Putative dihydroorotate 31.4 83 0.0028 26.7 5.8 63 149-216 262-331 (345)
368 4htf_A S-adenosylmethionine-de 31.2 1.1E+02 0.0039 24.1 6.5 27 131-157 134-161 (285)
369 3lop_A Substrate binding perip 31.1 1.4E+02 0.0047 24.4 7.2 39 131-177 194-232 (364)
370 4fc7_A Peroxisomal 2,4-dienoyl 31.1 2E+02 0.0067 22.8 10.9 39 62-100 25-63 (277)
371 3usb_A Inosine-5'-monophosphat 31.1 1.7E+02 0.0058 26.1 8.1 58 131-195 266-324 (511)
372 3pk0_A Short-chain dehydrogena 31.0 1.9E+02 0.0065 22.6 8.9 44 62-105 8-51 (262)
373 3hut_A Putative branched-chain 31.0 2.1E+02 0.0071 23.0 9.2 87 64-183 139-236 (358)
374 2lci_A Protein OR36; structura 31.0 1.3E+02 0.0044 20.6 7.3 45 65-109 3-47 (134)
375 2aef_A Calcium-gated potassium 30.9 1.8E+02 0.0061 22.3 8.1 112 65-194 10-123 (234)
376 3hvb_A Protein FIMX; EAL phosp 30.8 74 0.0025 27.3 5.6 68 130-202 354-429 (437)
377 2agk_A 1-(5-phosphoribosyl)-5- 30.8 69 0.0024 25.8 5.1 72 134-208 171-257 (260)
378 2o07_A Spermidine synthase; st 30.7 99 0.0034 25.4 6.1 22 65-86 120-141 (304)
379 3nrc_A Enoyl-[acyl-carrier-pro 30.7 1.8E+02 0.006 23.1 7.6 44 62-105 24-71 (280)
380 4fo4_A Inosine 5'-monophosphat 30.4 2.1E+02 0.0071 24.4 8.2 58 131-195 118-176 (366)
381 1vc4_A Indole-3-glycerol phosp 30.4 2E+02 0.0069 23.0 7.8 28 167-195 208-235 (254)
382 2nzl_A Hydroxyacid oxidase 1; 30.3 1.8E+02 0.0063 24.9 8.0 61 133-198 273-339 (392)
383 2fhp_A Methylase, putative; al 30.3 1.5E+02 0.0052 21.3 8.7 68 65-155 68-138 (187)
384 3rih_A Short chain dehydrogena 30.2 1.6E+02 0.0054 23.8 7.3 41 62-102 39-79 (293)
385 3nav_A Tryptophan synthase alp 30.2 1.8E+02 0.0062 23.6 7.5 41 149-196 197-237 (271)
386 3mti_A RRNA methylase; SAM-dep 30.0 73 0.0025 23.3 4.8 31 64-94 44-75 (185)
387 3tdn_A FLR symmetric alpha-bet 29.7 1.2E+02 0.0039 23.9 6.2 55 134-195 49-107 (247)
388 1wcw_A Uroporphyrinogen III sy 29.6 75 0.0026 25.1 5.1 32 60-93 4-35 (261)
389 1wxx_A TT1595, hypothetical pr 29.5 1.7E+02 0.0057 24.7 7.5 55 64-141 231-287 (382)
390 1edz_A 5,10-methylenetetrahydr 29.5 1.6E+02 0.0056 24.6 7.2 34 61-94 174-207 (320)
391 2px0_A Flagellar biosynthesis 29.5 1.5E+02 0.0052 24.2 7.0 9 132-140 181-189 (296)
392 3l77_A Short-chain alcohol deh 29.5 1.7E+02 0.0058 22.2 7.1 38 65-102 3-40 (235)
393 3lcv_B Sisomicin-gentamicin re 29.3 21 0.00073 29.6 1.6 75 64-177 156-237 (281)
394 1lnq_A MTHK channels, potassiu 29.2 2.1E+02 0.007 23.4 7.9 113 64-194 115-229 (336)
395 4dz1_A DALS D-alanine transpor 29.2 61 0.0021 25.1 4.4 55 61-141 134-192 (259)
396 3tql_A Arginine-binding protei 29.1 1.5E+02 0.0051 21.6 6.6 54 61-141 106-159 (227)
397 1jvn_A Glutamine, bifunctional 29.0 2.5E+02 0.0087 25.2 9.0 53 148-207 484-543 (555)
398 3kjx_A Transcriptional regulat 29.0 2.3E+02 0.0078 22.9 9.1 18 78-95 88-105 (344)
399 3ioy_A Short-chain dehydrogena 28.9 2.3E+02 0.008 23.0 10.0 42 62-103 6-47 (319)
400 1cyd_A Carbonyl reductase; sho 28.9 1.9E+02 0.0065 21.9 7.6 41 62-102 5-45 (244)
401 3sc6_A DTDP-4-dehydrorhamnose 28.9 1.1E+02 0.0036 24.1 5.9 31 65-95 6-36 (287)
402 4a26_A Putative C-1-tetrahydro 28.8 1.6E+02 0.0055 24.5 7.0 36 61-96 162-197 (300)
403 3tfo_A Putative 3-oxoacyl-(acy 28.7 2.2E+02 0.0074 22.5 8.5 42 64-105 4-45 (264)
404 3e8m_A Acylneuraminate cytidyl 28.7 1.6E+02 0.0053 20.9 7.9 53 151-211 39-91 (164)
405 3hz7_A Uncharacterized protein 28.6 1.1E+02 0.0039 20.1 5.0 32 64-95 29-60 (87)
406 1izc_A Macrophomate synthase i 28.6 2.6E+02 0.009 23.5 12.4 78 131-210 61-139 (339)
407 2y7i_A STM4351; arginine-bindi 28.6 1.7E+02 0.006 21.4 7.2 54 60-141 108-161 (229)
408 1yxy_A Putative N-acetylmannos 28.5 98 0.0033 24.0 5.5 40 148-195 175-214 (234)
409 3e61_A Putative transcriptiona 28.4 1.4E+02 0.0049 23.0 6.6 19 78-96 28-46 (277)
410 3bwc_A Spermidine synthase; SA 28.3 1.5E+02 0.0053 24.0 6.9 27 131-157 167-198 (304)
411 3huu_A Transcription regulator 28.2 2.2E+02 0.0075 22.4 9.2 21 78-98 47-67 (305)
412 3ajd_A Putative methyltransfer 28.2 2.1E+02 0.0073 22.6 7.7 56 65-143 109-166 (274)
413 3c0k_A UPF0064 protein YCCW; P 28.1 1.6E+02 0.0055 24.9 7.2 54 65-141 244-301 (396)
414 3ew7_A LMO0794 protein; Q8Y8U8 28.1 1.2E+02 0.0042 22.5 5.9 36 65-100 1-36 (221)
415 2e6f_A Dihydroorotate dehydrog 28.0 1.2E+02 0.0043 24.7 6.3 62 149-216 232-300 (314)
416 2o6l_A UDP-glucuronosyltransfe 28.0 84 0.0029 22.6 4.8 69 132-214 85-155 (170)
417 1p9l_A Dihydrodipicolinate red 27.7 2.3E+02 0.0079 22.5 10.0 81 65-180 1-82 (245)
418 2xhz_A KDSD, YRBH, arabinose 5 27.6 1.8E+02 0.0061 21.2 8.2 94 66-197 51-148 (183)
419 2wqp_A Polysialic acid capsule 27.5 2E+02 0.0068 24.4 7.5 77 74-185 90-166 (349)
420 3oig_A Enoyl-[acyl-carrier-pro 27.5 2.2E+02 0.0074 22.1 8.9 37 62-98 5-43 (266)
421 3f4w_A Putative hexulose 6 pho 27.5 79 0.0027 24.0 4.7 48 146-199 38-87 (211)
422 3sg0_A Extracellular ligand-bi 27.5 2.5E+02 0.0084 22.8 8.7 45 131-183 212-256 (386)
423 3lkz_A Non-structural protein 27.3 2.2E+02 0.0075 23.9 7.4 58 132-209 159-218 (321)
424 1vli_A Spore coat polysacchari 27.3 1.7E+02 0.0059 25.2 7.1 85 75-194 101-189 (385)
425 2fep_A Catabolite control prot 27.2 2.2E+02 0.0077 22.2 8.8 18 196-213 175-192 (289)
426 3paj_A Nicotinate-nucleotide p 27.2 1.7E+02 0.0057 24.6 6.9 53 149-209 219-271 (320)
427 3grp_A 3-oxoacyl-(acyl carrier 27.1 1.8E+02 0.0062 22.9 7.0 43 62-104 25-67 (266)
428 3vnd_A TSA, tryptophan synthas 27.1 2.1E+02 0.0072 23.2 7.4 41 149-196 195-235 (267)
429 3k9c_A Transcriptional regulat 27.1 2.3E+02 0.0077 22.2 7.8 20 194-213 163-182 (289)
430 3l8h_A Putative haloacid dehal 27.0 1.7E+02 0.006 20.9 7.5 23 148-178 32-54 (179)
431 1p0k_A Isopentenyl-diphosphate 27.0 1.3E+02 0.0046 25.0 6.4 45 145-195 235-279 (349)
432 4eso_A Putative oxidoreductase 26.9 1.9E+02 0.0067 22.5 7.1 44 62-105 6-49 (255)
433 3paj_A Nicotinate-nucleotide p 26.8 2.8E+02 0.0096 23.2 8.8 66 91-193 235-300 (320)
434 2b78_A Hypothetical protein SM 26.8 1.3E+02 0.0044 25.6 6.3 55 65-142 236-294 (385)
435 2h6r_A Triosephosphate isomera 26.7 2.2E+02 0.0076 22.0 11.3 40 167-206 170-214 (219)
436 2gpy_A O-methyltransferase; st 26.7 2.1E+02 0.0072 21.7 7.2 67 64-156 78-147 (233)
437 1viz_A PCRB protein homolog; s 26.6 2.2E+02 0.0075 22.7 7.3 64 95-195 20-83 (240)
438 4avf_A Inosine-5'-monophosphat 26.6 3.3E+02 0.011 24.0 13.7 44 148-195 317-360 (490)
439 3bbl_A Regulatory protein of L 26.6 2.3E+02 0.0078 22.1 9.8 17 196-212 166-182 (287)
440 1fmc_A 7 alpha-hydroxysteroid 26.6 2.1E+02 0.0073 21.8 8.3 42 62-103 9-50 (255)
441 3orh_A Guanidinoacetate N-meth 26.5 76 0.0026 24.7 4.5 54 65-143 84-138 (236)
442 1h5y_A HISF; histidine biosynt 26.5 2.2E+02 0.0074 21.8 9.6 56 133-195 46-105 (253)
443 4dmm_A 3-oxoacyl-[acyl-carrier 26.4 2.4E+02 0.0081 22.2 8.5 44 62-105 26-70 (269)
444 3oti_A CALG3; calicheamicin, T 26.4 1.2E+02 0.0041 25.2 6.0 34 63-96 19-56 (398)
445 3v8b_A Putative dehydrogenase, 26.3 2.4E+02 0.0084 22.3 9.7 44 62-105 26-69 (283)
446 3tsa_A SPNG, NDP-rhamnosyltran 26.3 93 0.0032 25.7 5.3 51 166-216 305-359 (391)
447 2hsj_A Putative platelet activ 26.3 95 0.0033 23.1 4.9 91 62-177 32-134 (214)
448 3tox_A Short chain dehydrogena 26.3 2.4E+02 0.0084 22.3 8.1 44 62-105 6-49 (280)
449 1y5e_A Molybdenum cofactor bio 26.3 65 0.0022 24.1 3.8 32 74-105 30-65 (169)
450 1jub_A Dihydroorotate dehydrog 26.3 1.4E+02 0.0049 24.2 6.4 62 149-215 229-297 (311)
451 1wa3_A 2-keto-3-deoxy-6-phosph 26.1 2.1E+02 0.0071 21.5 11.7 65 133-206 35-99 (205)
452 3qvq_A Phosphodiesterase OLEI0 26.0 2.4E+02 0.0082 22.1 9.8 118 76-209 128-249 (252)
453 3i6v_A Periplasmic His/Glu/Gln 26.0 1.9E+02 0.0066 21.6 6.8 50 61-141 104-153 (232)
454 3ftp_A 3-oxoacyl-[acyl-carrier 25.9 2E+02 0.0068 22.7 7.1 39 62-100 26-64 (270)
455 3md9_A Hemin-binding periplasm 25.9 34 0.0012 26.9 2.3 78 124-213 50-127 (255)
456 2i2c_A Probable inorganic poly 25.8 2.5E+02 0.0085 22.5 7.7 59 133-213 35-93 (272)
457 3egc_A Putative ribose operon 25.8 1.9E+02 0.0065 22.6 6.9 19 78-96 28-46 (291)
458 3clk_A Transcription regulator 25.8 2E+02 0.0068 22.4 7.1 17 196-212 166-182 (290)
459 2esr_A Methyltransferase; stru 25.8 1.8E+02 0.0061 20.8 6.3 25 65-89 55-79 (177)
460 3h7a_A Short chain dehydrogena 25.7 2.3E+02 0.008 21.9 8.6 38 62-99 5-42 (252)
461 4eyg_A Twin-arginine transloca 25.5 2.6E+02 0.009 22.5 10.7 45 131-180 192-236 (368)
462 2ffh_A Protein (FFH); SRP54, s 25.5 3.3E+02 0.011 23.6 11.5 34 63-96 125-161 (425)
463 2ioy_A Periplasmic sugar-bindi 25.4 2.4E+02 0.0082 21.9 9.2 20 77-96 20-39 (283)
464 1xj5_A Spermidine synthase 1; 25.4 1.3E+02 0.0043 25.2 5.9 27 131-157 192-223 (334)
465 2dul_A N(2),N(2)-dimethylguano 25.3 1.9E+02 0.0064 24.6 7.1 24 64-87 71-94 (378)
466 1dxe_A 2-dehydro-3-deoxy-galac 25.3 2.6E+02 0.0087 22.2 13.5 74 131-209 38-112 (256)
467 2yw3_A 4-hydroxy-2-oxoglutarat 25.2 2.3E+02 0.0079 21.7 11.1 70 133-213 124-200 (207)
468 3d8t_A Uroporphyrinogen-III sy 25.2 91 0.0031 25.2 4.9 33 59-93 28-60 (286)
469 2pnf_A 3-oxoacyl-[acyl-carrier 25.1 2.3E+02 0.0077 21.5 8.5 42 62-103 5-46 (248)
470 3sju_A Keto reductase; short-c 25.1 2.5E+02 0.0087 22.1 9.9 43 62-104 22-64 (279)
471 3p2o_A Bifunctional protein fo 25.1 93 0.0032 25.7 4.8 38 61-98 157-194 (285)
472 3tb6_A Arabinose metabolism tr 25.0 2.4E+02 0.0082 21.8 10.2 19 77-95 34-52 (298)
473 3awd_A GOX2181, putative polyo 24.9 2.3E+02 0.008 21.7 7.8 34 63-96 12-45 (260)
474 1a4i_A Methylenetetrahydrofola 24.8 98 0.0034 25.8 4.9 38 61-98 162-199 (301)
475 1yde_A Retinal dehydrogenase/r 24.7 2.5E+02 0.0087 22.0 7.9 43 62-104 7-49 (270)
476 3r2g_A Inosine 5'-monophosphat 24.7 3.2E+02 0.011 23.2 12.9 27 169-195 201-227 (361)
477 2pjk_A 178AA long hypothetical 24.5 78 0.0027 24.0 4.0 31 75-105 40-74 (178)
478 1iow_A DD-ligase, DDLB, D-ALA\ 24.4 38 0.0013 27.3 2.3 33 65-97 3-43 (306)
479 3cni_A Putative ABC type-2 tra 24.3 1E+02 0.0034 22.3 4.6 43 62-105 8-52 (156)
480 3s5p_A Ribose 5-phosphate isom 24.3 1.1E+02 0.0037 23.2 4.7 33 62-94 19-53 (166)
481 1tqj_A Ribulose-phosphate 3-ep 24.3 2.5E+02 0.0087 21.8 9.8 60 133-195 134-200 (230)
482 3hv8_A Protein FIMX; EAL phosp 24.1 51 0.0017 26.3 3.1 73 125-202 180-260 (268)
483 2a1i_A DNA excision repair pro 24.1 2.1E+02 0.007 21.2 6.1 44 64-107 84-131 (146)
484 1w6u_A 2,4-dienoyl-COA reducta 24.0 2.7E+02 0.0091 22.0 10.2 41 62-102 24-64 (302)
485 3l07_A Bifunctional protein fo 24.0 1E+02 0.0036 25.4 4.9 37 61-97 158-194 (285)
486 3foj_A Uncharacterized protein 23.9 1.6E+02 0.0053 19.3 5.2 39 63-101 55-93 (100)
487 3ot5_A UDP-N-acetylglucosamine 23.9 3.3E+02 0.011 23.0 10.5 44 165-213 318-361 (403)
488 3ppi_A 3-hydroxyacyl-COA dehyd 23.9 2.4E+02 0.0084 22.1 7.2 43 62-104 28-70 (281)
489 1inl_A Spermidine synthase; be 23.7 1.2E+02 0.0041 24.7 5.3 27 131-157 161-193 (296)
490 4eg0_A D-alanine--D-alanine li 23.7 82 0.0028 25.7 4.3 35 64-98 13-55 (317)
491 3zwt_A Dihydroorotate dehydrog 23.7 1.6E+02 0.0055 25.1 6.2 62 149-215 285-353 (367)
492 3dzc_A UDP-N-acetylglucosamine 23.6 3.1E+02 0.011 23.0 8.2 43 166-213 325-367 (396)
493 2gjl_A Hypothetical protein PA 23.6 3E+02 0.01 22.5 8.8 52 131-196 94-145 (328)
494 3pvs_A Replication-associated 23.6 3.2E+02 0.011 23.6 8.4 121 66-213 52-180 (447)
495 3grk_A Enoyl-(acyl-carrier-pro 23.5 2.8E+02 0.0097 22.1 8.1 44 62-105 29-74 (293)
496 1thf_D HISF protein; thermophI 23.4 2.6E+02 0.0089 21.6 8.9 31 166-196 73-103 (253)
497 3gk5_A Uncharacterized rhodane 23.3 1.4E+02 0.0049 19.9 5.0 39 64-102 55-93 (108)
498 3p9z_A Uroporphyrinogen III co 23.3 2.6E+02 0.0088 21.5 10.2 108 63-210 109-224 (229)
499 2is8_A Molybdopterin biosynthe 23.3 35 0.0012 25.4 1.8 30 76-105 22-55 (164)
500 3tha_A Tryptophan synthase alp 23.2 1.7E+02 0.0059 23.5 6.1 37 168-204 89-131 (252)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.96 E-value=6e-29 Score=190.32 Aligned_cols=122 Identities=23% Similarity=0.422 Sum_probs=111.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++|||||||++.++..+..+|+..||. +..+.||.+|++.+. ...||+||+|+
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-------------------------~~~~DlillD~ 65 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-------------------------KGDFDFVVTDW 65 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-------------------------HHCCSEEEEES
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-------------------------hCCCCEEEEcC
Confidence 4679999999999999999999999995 778999999999987 45799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+||+|||++++++||+ .+..+++|||++|+..+.+...+++++|+++||.|||++++|.++|++++++
T Consensus 66 ~MP~mdG~el~~~ir~----~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 66 NMPGMQGIDLLKNIRA----DEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CCSSSCHHHHHHHHHH----STTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCCCHHHHHHHHHh----CCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999996 2355789999999999999999999999999999999999999999988754
No 2
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.95 E-value=7.2e-28 Score=196.09 Aligned_cols=187 Identities=27% Similarity=0.402 Sum_probs=113.1
Q ss_pred chhhhhhcCCCceeEEcccceeeeeeccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCcEEEEEeccHHHHHHHHHH
Q 026988 4 GKEQAETTSHPEKLELEHGLQLEFKPVPVTNNIIPQAEGSSSSCPVNDDVTGVDEKKVLEGLSVLLVEDQAVLQRIGIRM 83 (230)
Q Consensus 4 ~~~~~~~~g~~~~~~~~~g~g~~f~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLiVdd~~~~~~~l~~~ 83 (230)
++.-+.+|||.++++|++|+|++|+ ..+|.......... ..........+++||||||++.++..+..+
T Consensus 12 ~~~~~~~hgG~i~v~S~~g~Gs~f~------~~lP~~~~~~~~~~-----~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~ 80 (206)
T 3mm4_A 12 GLVPRGSHMASTDSESETRVKSVRT------GRKPIGNPEDEQET-----SKPSDDEFLRGKRVLVVDDNFISRKVATGK 80 (206)
T ss_dssp EECC--------------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHH
T ss_pred CcccccccCCceeeeccCCCcceee------eccCCCCCcccccc-----cCCCcccccCCCEEEEEeCCHHHHHHHHHH
Confidence 3445678999999999999999998 22332211111000 011112335678999999999999999999
Q ss_pred HHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhh
Q 026988 84 LKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEA 162 (230)
Q Consensus 84 L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~ 162 (230)
|+..|| .|..+.++.+|++.+....... +.........||+||+|+.||+++|+++++.||+...
T Consensus 81 L~~~g~~~v~~a~~~~eal~~l~~~~~~~------------~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~-- 146 (206)
T 3mm4_A 81 LKKMGVSEVEQCDSGKEALRLVTEGLTQR------------EEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEK-- 146 (206)
T ss_dssp HHHTTCSEEEEESSHHHHHHHHHHHHHHH------------HHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHH--
T ss_pred HHHcCCCeeeeeCCHHHHHHHHHhhcccc------------cccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhh--
Confidence 999999 8999999999999987421100 0000001247999999999999999999999996321
Q ss_pred hcCCCceEEEEecCC-ChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 163 ETGQSIPIIAFTALV-TADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 163 ~~~~~~pii~ls~~~-~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
...+.+|||++|+.. +......+++.|+++||.||++ +|..+|++++.++..+
T Consensus 147 ~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~~ 200 (206)
T 3mm4_A 147 SYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHLE 200 (206)
T ss_dssp TTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC------
T ss_pred hcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHHh
Confidence 124679999999988 7788889999999999999999 8999999988765444
No 3
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.92 E-value=1.7e-26 Score=174.09 Aligned_cols=114 Identities=19% Similarity=0.292 Sum_probs=101.0
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++|||||||++.++..+..+|+..||.|. ++.||.+|++.+. ..+||+||+|+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-------------------------~~~~DlvllDi 61 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-------------------------KGQFDIAIIDV 61 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-------------------------HCCSSEEEECS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------------------------hCCCCEEEEec
Confidence 467999999999999999999999999975 7899999999987 66899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+||+|||+++++.+|+ .++|||++|++.+.... .++|+++||.|||+.++|.++|.++++
T Consensus 62 ~mP~~~G~el~~~lr~--------~~ipvI~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 62 NLDGEPSYPVADILAE--------RNVPFIFATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp SSSSCCSHHHHHHHHH--------TCCSSCCBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CCCCCCHHHHHHHHHc--------CCCCEEEEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9999999999999985 35899999998765543 467999999999999999998876543
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.91 E-value=1.5e-23 Score=155.86 Aligned_cols=119 Identities=29% Similarity=0.382 Sum_probs=109.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlvllD~~~p 57 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-------------------------EFTPDLIVLXIMMP 57 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-------------------------TBCCSEEEECSCCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeccCC
Confidence 48999999999999999999999999999999999999886 67899999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+++|+++++++|+. ...+.+|||++|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 58 ~~~g~~~~~~l~~~----~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 58 VMDGFTVLKKLQEK----EEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SSCHHHHHHHHHTS----TTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHhc----ccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999852 23467999999999999999999999999999999999999999998764
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.91 E-value=2.5e-23 Score=157.53 Aligned_cols=125 Identities=21% Similarity=0.347 Sum_probs=112.4
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
+..+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvl~D~~ 57 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-------------------------KNLPDALICDVL 57 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEeCC
Confidence 3569999999999999999999999999999999999999887 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
||+++|+++++.+|+. +..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++.+...
T Consensus 58 lp~~~g~~~~~~lr~~----~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 58 LPGIDGYTLCKRVRQH----PLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp CSSSCHHHHHHHHHHS----GGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHcC----CCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999862 234578999999999999999999999999999999999999999999986543
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.91 E-value=4.7e-23 Score=152.61 Aligned_cols=117 Identities=29% Similarity=0.403 Sum_probs=108.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlii~D~~~p 57 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-------------------------ELQPDLILLDIMLP 57 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------TTCCSEEEEETTST
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-------------------------hCCCCEEEEeCCCC
Confidence 48999999999999999999999999999999999999987 67899999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+++|+++++.+|+ ..++|||++|+..+......+++.|+++||.||++.++|..++++.+++
T Consensus 58 ~~~g~~~~~~lr~-------~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 58 NKDGVEVCREVRK-------KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp TTHHHHHHHHHHT-------TCCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHh-------cCCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 9999999999985 2368999999999999999999999999999999999999999988764
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.90 E-value=1.1e-22 Score=153.39 Aligned_cols=125 Identities=36% Similarity=0.573 Sum_probs=109.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
++||||||++..+..+..+|+..|+ .+..+.++.+|++.+...... ...||+||+|+.|
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~--------------------~~~~dlvllD~~m 62 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSK--------------------GENYNMIFMDVQM 62 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHH--------------------TCCCSEEEECSCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhc--------------------CCCCCEEEEeCCC
Confidence 6899999999999999999999997 588999999999988732111 2579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|++||+++++.+|+. ....+|||++|+..+......+++.|+++||.||++.++|..+|++++...
T Consensus 63 p~~~G~~~~~~lr~~-----~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 63 PKVDGLLSTKMIRRD-----LGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp SSSCHHHHHHHHHHH-----SCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CCCChHHHHHHHHhh-----cCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999852 234589999999999999999999999999999999999999999887654
No 8
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.90 E-value=1e-22 Score=155.58 Aligned_cols=125 Identities=25% Similarity=0.442 Sum_probs=108.2
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.++++||||||++..+..+..+|+..||.+..+.+++++++.+. ...||+||+|+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvl~D~ 66 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-------------------------EEDYDAVIVDL 66 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-------------------------HSCCSEEEEES
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeC
Confidence 45689999999999999999999999999999999999999886 56799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++.+|+..+. ..+.+|||++|+..+......+++.|+++||.||++.++|..+|..+...
T Consensus 67 ~mp~~~g~~~~~~lr~~~~~--~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 67 HMPGMNGLDMLKQLRVMQAS--GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCSSSCHHHHHHHHHHHHHT--TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHhchhc--cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999864322 34668999999999999999999999999999999999999999987654
No 9
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.90 E-value=1.4e-22 Score=151.78 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=109.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+++||+|||++..+..+..+|+..||. +..+.++.+++..+.. ...||+||+|+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~------------------------~~~~dlvi~D~ 59 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA------------------------NADTKVLITDW 59 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH------------------------CTTCCEEEECS
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh------------------------CCCCCEEEEeC
Confidence 4579999999999999999999999995 8899999999988761 44799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++++|+. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+
T Consensus 60 ~~p~~~g~~~~~~lr~~----~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 60 NMPEMNGLDLVKKVRSD----SRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CCSSSCHHHHHHHHHTS----TTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHhc----CCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999852 234679999999999999999999999999999999999999999998865
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.89 E-value=6.5e-23 Score=163.40 Aligned_cols=122 Identities=17% Similarity=0.303 Sum_probs=111.2
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.+.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvl~D~ 59 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-------------------------AEKFEFITVXL 59 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-------------------------TSCCSEEEECS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------hCCCCEEEEec
Confidence 45679999999999999999999999999999999999999886 67899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.||++||+++++.+|+ ..+++|||++|+..+......+++.|+++||.||++.++|..+|+.++.+.
T Consensus 60 ~lp~~~g~~~~~~l~~------~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 60 HLGNDSGLSLIAPLCD------LQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EETTEESHHHHHHHHH------HCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred cCCCccHHHHHHHHHh------cCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999996 345799999999999999999999999999999999999999998776543
No 11
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.89 E-value=7.7e-22 Score=146.79 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=109.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+.+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~D~~l 57 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-------------------------DVRNGVLVTDLRM 57 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-------------------------GCCSEEEEEECCS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEECCC
Confidence 469999999999999999999999999999999999998875 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
|+++|+++++.+++ ..+.+|||++|+..+......+++.|+++|+.||++.++|..+++.++.+
T Consensus 58 ~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 58 PDMSGVELLRNLGD------LKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp TTSCHHHHHHHHHH------TTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999986 34578999999999999999999999999999999999999999988764
No 12
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.89 E-value=3.1e-22 Score=155.07 Aligned_cols=122 Identities=21% Similarity=0.337 Sum_probs=110.2
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
...++||||||++..+..+..+|+..||.+. .+.++.++++.+... ...||+||+|
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~-----------------------~~~~dliilD 90 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH-----------------------YPNIDIVTLX 90 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----------------------GGGCCEEEEC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----------------------CCCCCEEEEe
Confidence 3457999999999999999999999999988 999999999998732 2268999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+.||+++|+++++.||+. .+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.
T Consensus 91 ~~l~~~~g~~~~~~lr~~------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 91 ITMPKMDGITCLSNIMEF------DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp SSCSSSCHHHHHHHHHHH------CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred ccCCCccHHHHHHHHHhh------CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999963 467899999999999999999999999999999999999999988764
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.88 E-value=1.4e-21 Score=143.77 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=109.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|...||.+..+.++.+++..+. ...||++|+|+.||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-------------------------~~~~dlil~D~~l~ 55 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-------------------------EHIPDIAIVDLGLP 55 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEECSCCS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-------------------------ccCCCEEEEecCCC
Confidence 47999999999999999999999999999999999999887 55799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ ..+.+|||++|+..+......+++.|+++|+.||++.++|..+++.++.+.
T Consensus 56 ~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 56 DEDGLSLIRRWRS------NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp SSCHHHHHHHHHH------TTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh------cCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999985 345689999999999999999999999999999999999999999887653
No 14
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=6.2e-22 Score=164.98 Aligned_cols=121 Identities=24% Similarity=0.320 Sum_probs=112.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvllD~~ 76 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-------------------------ETRPDAVILDVX 76 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCC
Confidence 4579999999999999999999999999999999999999987 457999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||++||+++++.||+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++++.
T Consensus 77 lp~~~g~~~~~~lr~------~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 77 MPGMDGFGVLRRLRA------DGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp CSSSCHHHHHHHHHH------TTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh------cCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999996 345789999999999999999999999999999999999999999998764
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.88 E-value=1.1e-21 Score=147.31 Aligned_cols=120 Identities=18% Similarity=0.321 Sum_probs=110.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvl~D~~l 57 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-------------------------NEFFNLALFXIKL 57 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEECSBC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-------------------------cCCCCEEEEecCC
Confidence 358999999999999999999999999999999999999887 5579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++. .+.+|||++|+..+......+++.|+++||.||++.++|..+|++++.+.
T Consensus 58 ~~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 58 PDMEGTELLEKAHKL------RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp SSSBHHHHHHHHHHH------CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhh------CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999862 35689999999999999999999999999999999999999999988754
No 16
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.88 E-value=1.6e-21 Score=150.62 Aligned_cols=125 Identities=25% Similarity=0.387 Sum_probs=114.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlii~D~~l 61 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-------------------------LTRPDLIISDVLM 61 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-------------------------TCCCSEEEEESCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEeCCC
Confidence 569999999999999999999999999999999999999986 6789999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.||+. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+....
T Consensus 62 ~~~~g~~~~~~lr~~----~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 131 (154)
T 3gt7_A 62 PEMDGYALCRWLKGQ----PDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRT 131 (154)
T ss_dssp SSSCHHHHHHHHHHS----TTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHhC----CCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999962 2236799999999999999999999999999999999999999999999865444
No 17
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.88 E-value=8.7e-22 Score=145.92 Aligned_cols=118 Identities=23% Similarity=0.312 Sum_probs=108.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~l~ 58 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-------------------------KERPDLVLLDMKIP 58 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESCCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-------------------------ccCCCEEEEecCCC
Confidence 58999999999999999999999999999999999999887 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+++|+++++.+++. .+.+|||++|+..+......+++.|+++||.||++.++|..++++++.+
T Consensus 59 ~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 59 GMDGIEILKRMKVI------DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp TCCHHHHHHHHHHH------CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHh------CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999862 4568999999999988899999999999999999999999999987754
No 18
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.88 E-value=9.9e-22 Score=146.78 Aligned_cols=122 Identities=26% Similarity=0.397 Sum_probs=105.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+++||+|||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~ 59 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-------------------------GFTPDLMICDI 59 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-------------------------TCCCSEEEECC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-------------------------cCCCCEEEEec
Confidence 45679999999999999999999999999999999999999886 67899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~~~ 214 (230)
.||+++|+++++.+|+ ..+.+|||++|+..+......+++.|+++||.||+ +.++|..+++.++.++
T Consensus 60 ~l~~~~g~~~~~~l~~------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 60 AMPRMNGLKLLEHIRN------RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp C-----CHHHHHHHHH------TTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHh------cCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 9999999999999996 34578999999999999999999999999999999 8999999999988764
No 19
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.88 E-value=1.8e-21 Score=149.79 Aligned_cols=123 Identities=21% Similarity=0.287 Sum_probs=113.2
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
...+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~D~~ 67 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-------------------------SREVDLVISAAH 67 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESC
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-------------------------cCCCCEEEEeCC
Confidence 4579999999999999999999999999999999999999987 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG-MDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G-~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
||+++|+++++.||+ ..+.+|||++|+..+......++..| +++||.||++.++|..+|+.++.+...
T Consensus 68 l~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 68 LPQMDGPTLLARIHQ------QYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp CSSSCHHHHHHHHHH------HCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHh------HCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 999999999999996 34579999999999999999999999 999999999999999999998875543
No 20
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.88 E-value=1.6e-22 Score=173.01 Aligned_cols=119 Identities=25% Similarity=0.302 Sum_probs=107.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
+.+||+|||++.++..+..+|+..||.|. .+.||.+|++.+. ...||+||+|+.
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-------------------------~~~~dlvl~D~~ 214 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-------------------------RRTPGLVLADIQ 214 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-------------------------HCCCSEEEEESC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEcCC
Confidence 45899999999999999999999999999 9999999999997 567999999999
Q ss_pred CC-CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 143 MG-SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 143 mp-~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
|| +|||+++++.||+. . ++|||++|+.. +....++++|+++||.||++.++|..+|+.++.+...
T Consensus 215 MPd~mdG~e~~~~ir~~------~-~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 215 LADGSSGIDAVKDILGR------M-DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp CTTSCCTTTTTHHHHHH------T-TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHhc------C-CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 99 79999999999963 2 79999999985 3466788999999999999999999999999987644
No 21
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.88 E-value=8.1e-22 Score=146.70 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=107.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~D~~l 57 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-------------------------TRGYDAVFIDLNL 57 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESBC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-------------------------hcCCCEEEEeCCC
Confidence 469999999999999999999999999999999999999987 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
|+++|+++++.+|+. ...+.+|||++|+..+... ..++..|+++||.||++.++|.++++.......
T Consensus 58 ~~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 58 PDTSGLALVKQLRAL----PMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp SSSBHHHHHHHHHHS----CCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhh----hccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 999999999999962 2257799999999988887 888999999999999999999999998877543
No 22
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.87 E-value=4.5e-21 Score=142.62 Aligned_cols=122 Identities=25% Similarity=0.417 Sum_probs=109.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.++||+|||++..+..+...|+..|| .+..+.++.++++.+. ...||+||+|+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvi~D~ 57 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-------------------------AGGYGFVISDW 57 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-------------------------TCCCCEEEEES
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-------------------------hcCCCEEEEeC
Confidence 347899999999999999999999999 7899999999998886 66799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++.+|+. ...+.+|||++|+..+......+++.|+++|+.||++.++|..++++++..
T Consensus 58 ~l~~~~g~~l~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 58 NMPNMDGLELLKTIRAX----XAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CCSSSCHHHHHHHHHC------CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhh----cccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 99999999999999852 234578999999999999999999999999999999999999999988764
No 23
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.87 E-value=4e-21 Score=147.41 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=112.3
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcC--CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLG--AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
...++||||||++..+..+..+|+..| +.+..+.++.+|++.+. ...||+||+
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-------------------------~~~~dlii~ 72 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-------------------------KESVDIAIL 72 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-------------------------TSCCSEEEE
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-------------------------ccCCCEEEE
Confidence 345799999999999999999999887 78999999999999986 678999999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
|+.||+++|+++++.||+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++.++.
T Consensus 73 D~~l~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 73 DVEMPVKTGLEVLEWIRS------EKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CSSCSSSCHHHHHHHHHH------TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCcHHHHHHHHHH------hCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 999999999999999996 3467999999999999999999999999999999999999999999998653
No 24
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.87 E-value=4.3e-21 Score=141.77 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=109.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvi~D~~l 57 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-------------------------EYDINLVIMDINL 57 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEECSSC
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEcCCC
Confidence 358999999999999999999999999999999999999887 5579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++. +.+|+|++|+..+......+++.|+++|+.||++.++|..+++.++.+.
T Consensus 58 ~~~~g~~~~~~l~~~-------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 58 PGKNGLLLARELREQ-------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SSSCHHHHHHHHHHH-------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC-------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999862 4689999999999888899999999999999999999999999887653
No 25
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.87 E-value=2.3e-21 Score=162.60 Aligned_cols=122 Identities=30% Similarity=0.544 Sum_probs=112.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+++||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-------------------------~~~~dlvl~D~ 181 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-------------------------KNHIDIVLSDV 181 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-------------------------HSCCSEEEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEcC
Confidence 45689999999999999999999999999999999999999987 55799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.||++||+++++.||+. .+.+|||++|+..+......+++.|+++||.||++.++|..+|++++.+.
T Consensus 182 ~mp~~~G~~l~~~ir~~------~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 182 NMPNMDGYRLTQRIRQL------GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp SSCSSCCHHHHHHHHHH------HCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc------CCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999973 24689999999999999999999999999999999999999999888754
No 26
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.87 E-value=7e-22 Score=149.23 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=112.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~D~~l 60 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-------------------------SDDAIGMIIEAHL 60 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-------------------------CTTEEEEEEETTG
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-------------------------ccCCCEEEEeCcC
Confidence 469999999999999999999999999999999999988775 6679999999999
Q ss_pred CC--CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GS--MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~--~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+ ++|+++++.+|+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++......
T Consensus 61 ~~~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~ 130 (136)
T 3kto_A 61 EDKKDSGIELLETLVK------RGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEG 130 (136)
T ss_dssp GGBTTHHHHHHHHHHH------TTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC--
T ss_pred CCCCccHHHHHHHHHh------CCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCC
Confidence 99 999999999996 346799999999999999999999999999999999999999999999876544
No 27
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.87 E-value=2.6e-21 Score=142.38 Aligned_cols=116 Identities=25% Similarity=0.346 Sum_probs=105.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
++||+|||++..+..+...|+..||. +..+.++.+++..+. ...||+||+|+.|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-------------------------~~~~dlil~D~~l 57 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-------------------------ELKPDIVTMDITM 57 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEECSC
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-------------------------hcCCCEEEEeCCC
Confidence 58999999999999999999999998 568999999999887 4469999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
|+++|+++++.+++. .+.+|||++|+..+......+++.|+++|+.||++.++|..++++++
T Consensus 58 ~~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 58 PEMNGIDAIKEIMKI------DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp GGGCHHHHHHHHHHH------CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHhh------CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999999999999863 35689999999999999999999999999999999999999998764
No 28
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.87 E-value=5.2e-21 Score=145.14 Aligned_cols=125 Identities=21% Similarity=0.277 Sum_probs=113.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|+..||.+..+.++.+|+..+... ...||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~-----------------------~~~~dlvi~d~~l 59 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTEN-----------------------CNSIDVVITDMKM 59 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT-----------------------TTTCCEEEEESCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhC-----------------------CCCCCEEEEeCCC
Confidence 46999999999999999999999999999999999999988621 4579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.+|+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+....
T Consensus 60 ~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 60 PKLSGMDILREIKK------ITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp SSSCHHHHHHHHHH------HCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH------hCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 346799999999999999999999999999999999999999999998865443
No 29
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.87 E-value=1.2e-21 Score=149.31 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=112.3
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILM 139 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~ 139 (230)
..+.+||||||++..+..+..+|+..| |.+..+.++.+++..+.. . ..||+||+
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~------------------------~~~~~dlvi~ 73 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD------------------------GLDAFDILMI 73 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH------------------------HHTTCSEEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh------------------------cCCCCCEEEE
Confidence 446799999999999999999999999 999999999988877651 3 67999999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
|+.||+++|+++++.||+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++.+..
T Consensus 74 D~~l~~~~g~~~~~~l~~------~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 74 DGAALDTAELAAIEKLSR------LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp ECTTCCHHHHHHHHHHHH------HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred eCCCCCccHHHHHHHHHH------hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 999999999999999996 3457899999999999999999999999999999999999999999998654
No 30
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.87 E-value=9.4e-22 Score=148.91 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=112.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKK-LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~D~ 141 (230)
..+||||||++..+..+..+|+. .||.+..+.++.+|++.+. . ..||+||+|+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~-------------------------~~~~~dlvi~D~ 58 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK-------------------------DLDSITLIIMDI 58 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT-------------------------TCCCCSEEEECS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh-------------------------cCCCCcEEEEeC
Confidence 46999999999999999999999 9999999999999999886 6 7899999999
Q ss_pred CCC-CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcc
Q 026988 142 QMG-SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 142 ~mp-~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~ 218 (230)
.|| +++|+++++.||+. +..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++++.....
T Consensus 59 ~l~~~~~g~~~~~~l~~~----~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 132 (140)
T 3lua_A 59 AFPVEKEGLEVLSAIRNN----SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRFR 132 (140)
T ss_dssp CSSSHHHHHHHHHHHHHS----GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-----
T ss_pred CCCCCCcHHHHHHHHHhC----cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccccC
Confidence 999 99999999999961 23467999999999999999999999999999999999999999999998765543
No 31
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.87 E-value=3.5e-21 Score=144.72 Aligned_cols=122 Identities=22% Similarity=0.352 Sum_probs=109.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||||||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~l~ 58 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-------------------------TEKPDLIVLDVMLP 58 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESSCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-------------------------hcCCCEEEEecCCC
Confidence 58999999999999999999999999999999999999886 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+++|+++++.+++. .+.+|||++|+..+......+++.|+++||.||++.++|..+++.++.+...+
T Consensus 59 ~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 125 (136)
T 1mvo_A 59 KLDGIEVCKQLRQQ------KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEIR 125 (136)
T ss_dssp SSCHHHHHHHHHHT------TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHcC------CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999862 35689999999988888889999999999999999999999999998865544
No 32
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.87 E-value=1.6e-21 Score=146.20 Aligned_cols=122 Identities=18% Similarity=0.263 Sum_probs=109.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
++||+|||++..+..+..+|++.||.+. .+.++.+|++.+. ...||+||+|+.|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-------------------------~~~~dlii~d~~l 56 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-------------------------TLKPDIVIIDVDI 56 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-------------------------HHCCSEEEEETTC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-------------------------hcCCCEEEEecCC
Confidence 6899999999999999999999999987 8999999999987 4579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.+|+ ..+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+....
T Consensus 57 ~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 57 PGVNGIQVLETLRK------RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp SSSCHHHHHHHHHH------TTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred CCCChHHHHHHHHh------cCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 99999999999996 345789999999999989999999999999999999999999999999876443
No 33
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.87 E-value=3.6e-21 Score=144.75 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=107.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC--CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG--AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+||+|||++..+..+..+|+..| +.+..+.++.++++.+. ...||+||+|+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-------------------------~~~~dlvilD~~ 58 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-------------------------EYNPNVVILDIE 58 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-------------------------HHCCSEEEECSS
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-------------------------hcCCCEEEEecC
Confidence 589999999999999999999887 56778999999999887 446999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+++|+++++.+|+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++.+.
T Consensus 59 lp~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 59 MPGMTGLEVLAEIRK------KHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp CSSSCHHHHHHHHHH------TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHH------HCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999986 345799999999999999999999999999999999999999999988654
No 34
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.87 E-value=7.7e-21 Score=140.20 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=108.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~l~ 57 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-------------------------NQSVDLILLDINLP 57 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESCCS
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 48999999999999999999999999999999999998886 55799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+++|+++++.+|+ .+.+|||++|+..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 58 ~~~g~~~~~~l~~-------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 58 DENGLMLTRALRE-------RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCHHHHHHHHHT-------TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHh-------cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999999999984 3568999999999988889999999999999999999999999988765
No 35
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.87 E-value=2.3e-21 Score=143.30 Aligned_cols=120 Identities=24% Similarity=0.378 Sum_probs=103.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+..+|+..||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvi~D~~l~ 56 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-------------------------ENKPDLILMDIQLP 56 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-------------------------HHCCSEEEEESBCS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 48999999999999999999999999999999999999886 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+++|+++++.+|+. ...+.+|||++|+..+......+++.|+++||.||++.++|..+++.++.+
T Consensus 57 ~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 57 EISGLEVTKWLKED----DDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp SSBHHHHHHHHHHS----TTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHcC----ccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999862 123578999999998888889999999999999999999999999988764
No 36
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.87 E-value=2.7e-21 Score=146.27 Aligned_cols=123 Identities=23% Similarity=0.337 Sum_probs=110.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|...||.+..+.++.++++.+. ...||+||+|+.|
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvllD~~l 58 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-------------------------SNKYDLIFLEIIL 58 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-------------------------HCCCSEEEEESEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-------------------------hcCCCEEEEeCCC
Confidence 468999999999999999999999999999999999999887 5579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~ 218 (230)
|+++|+++++.|++ . ..+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+...+.
T Consensus 59 ~~~~g~~l~~~l~~------~-~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~~~ 126 (136)
T 2qzj_A 59 SDGDGWTLCKKIRN------V-TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNSYV 126 (136)
T ss_dssp TTEEHHHHHHHHHT------T-CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHcc------C-CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhhcc
Confidence 99999999999985 1 26899999999999999999999999999999999999999999887655443
No 37
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.87 E-value=2.5e-21 Score=162.99 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=113.2
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+.+||||||++..+..+...|+..|+.+..+.++.+|++.+.. ...||+||+|+.
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~------------------------~~~~dlvllD~~ 178 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ------------------------HPAIRLVLVDYY 178 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH------------------------CTTEEEEEECSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc------------------------CCCCCEEEEcCC
Confidence 46799999999999999999999999999999999999998861 335899999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
||++||++++++||+.. ....+|||++|+..+......+++.|+++||.||++.++|..+|++++......
T Consensus 179 mP~~dG~~l~~~lr~~~----~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~ 249 (259)
T 3luf_A 179 MPEIDGISLVRMLRERY----SKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQF 249 (259)
T ss_dssp CSSSCHHHHHHHHHHHC----CTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHhcc----CCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhhh
Confidence 99999999999999632 235689999999999999999999999999999999999999999998765443
No 38
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.87 E-value=1.4e-21 Score=147.83 Aligned_cols=127 Identities=22% Similarity=0.317 Sum_probs=111.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
...+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~~ 59 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-------------------------RRPYAAMTVDLN 59 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-------------------------HSCCSEEEECSC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCC
Confidence 3469999999999999999999999999999999999999987 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHH-HHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER-ECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~-~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~ 218 (230)
||+++|+++++.||+. ...+.+|||++|+..+..... .++..|+++||.||++.++|..+|++++.+.....
T Consensus 60 l~~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~~ 132 (140)
T 3grc_A 60 LPDQDGVSLIRALRRD----SRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEGK 132 (140)
T ss_dssp CSSSCHHHHHHHHHTS----GGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHhC----cccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999952 234679999999987776666 88999999999999999999999999998765543
No 39
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.87 E-value=6.8e-21 Score=143.27 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=110.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|+..||.+..+.++.+++..+.. ...||+||+|+.|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~------------------------~~~~dlvi~D~~l 62 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY------------------------QKRIGLMITDLRM 62 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH------------------------CTTEEEEEECSCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh------------------------CCCCcEEEEeccC
Confidence 4699999999999999999999999999999999999998861 3349999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.||+. ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+++.......
T Consensus 63 ~~~~g~~~~~~l~~~-----~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (136)
T 3hdv_A 63 QPESGLDLIRTIRAS-----ERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEGH 131 (136)
T ss_dssp SSSCHHHHHHHHHTS-----TTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHHHhc-----CCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchhh
Confidence 999999999999962 146799999999999999999999999999999999999999999988765443
No 40
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.87 E-value=1.1e-20 Score=144.94 Aligned_cols=130 Identities=23% Similarity=0.276 Sum_probs=109.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.++||||||++..+..+...|+..|+ .+..+.++.+++..+.... .......||+||+|
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~------------------~~~~~~~~dlillD 68 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG------------------EYENSPRPNLILLD 68 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG------------------GGTTCCCCSEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc------------------ccccCCCCCEEEEe
Confidence 347999999999999999999999887 7889999999999885100 00001479999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+.||+++|+++++.||+. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|++++...
T Consensus 69 ~~lp~~~g~~l~~~l~~~----~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 69 LNLPKKDGREVLAEIKQN----PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp SCCSSSCHHHHHHHHHHC----TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHhC----cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999862 1235789999999999889999999999999999999999999999887654
No 41
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.87 E-value=2.9e-21 Score=145.47 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=113.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||||||++..+..+..+|...|+.+..+.++.+|++.+. ...||+||+|+.|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~~l 61 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-------------------------LHAPDVIITDIRM 61 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-------------------------HHCCSEEEECSSC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-------------------------ccCCCEEEEeCCC
Confidence 479999999999999999999999999999999999999987 4579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.||+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++++....
T Consensus 62 ~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 62 PKLGGLEMLDRIKA------GGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp SSSCHHHHHHHHHH------TTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh------cCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999996 346789999999999999999999999999999999999999999999865443
No 42
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.87 E-value=4.3e-21 Score=142.91 Aligned_cols=121 Identities=25% Similarity=0.304 Sum_probs=109.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.++||+|||++..+..+...|+..|| .+..+.++.+++..+. ...||+||+|+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~ 60 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-------------------------QNPHHLVISDFN 60 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-------------------------TSCCSEEEECSS
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-------------------------cCCCCEEEEeCC
Confidence 46899999999999999999999999 7889999999999887 667999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
||+++|+++++.+|+. ...+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+
T Consensus 61 l~~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 61 MPKMDGLGLLQAVRAN----PATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp SCSSCHHHHHHHHTTC----TTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhcC----ccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999852 224678999999999988889999999999999999999999999988764
No 43
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.87 E-value=1.1e-20 Score=141.91 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=111.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++||||||++..+..+...|+..|+ .+..+.++.++++.+.... .......||+||+|+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~------------------~~~~~~~~dlvi~d~ 63 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEG------------------EYANASRPDLILLXL 63 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCG------------------GGGSCCCCSEEEECS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHccc------------------ccccCCCCcEEEEec
Confidence 46999999999999999999999998 8999999999999886100 000016799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
.||+++|+++++.+|+.. ..+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+...
T Consensus 64 ~~~~~~g~~~~~~l~~~~----~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 64 NLPKKDGREVLAEIKSDP----TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp SCSSSCHHHHHHHHHHST----TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHcCc----ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 999999999999999631 12568999999999999999999999999999999999999999998876543
No 44
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.87 E-value=5.8e-21 Score=145.20 Aligned_cols=126 Identities=21% Similarity=0.349 Sum_probs=113.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCe--EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAG--VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+++||||||++..+..+..+|+..|+. +..+.++.+|++.+. ...||+||+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~D 58 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-------------------------QAKYDLIILD 58 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-------------------------TCCCSEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-------------------------cCCCCEEEEe
Confidence 4579999999999999999999999987 889999999999986 6789999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHHhccCc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~~~~~~ 217 (230)
+.||+++|+++++.||+. ...+.+|||++|+..+......+++.|+++||.||+ +.++|..+|+.++++....
T Consensus 59 ~~l~~~~g~~~~~~lr~~----~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 59 IGLPIANGFEVMSAVRKP----GANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp TTCGGGCHHHHHHHHHSS----STTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhc----ccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999851 235679999999999999999999999999999999 9999999999998865443
No 45
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.86 E-value=6.2e-21 Score=144.35 Aligned_cols=122 Identities=27% Similarity=0.438 Sum_probs=106.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||||||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlvi~D~~l~ 58 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-------------------------ATPPDLVLLDIMME 58 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESCCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-------------------------ccCCCEEEEeCCCC
Confidence 58999999999999999999999999999999999999887 55799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+++|+++++.|++. ...+.+|||++|+..........+..|+++||.||++.++|..+|+.++.+..
T Consensus 59 ~~~g~~~~~~l~~~----~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 59 PMDGWETLERIKTD----PATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp SSCHHHHHHHHHHS----TTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred CCCHHHHHHHHHcC----cccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999862 22357899999998766666666777889999999999999999999887543
No 46
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.86 E-value=6.2e-21 Score=139.97 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=107.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~l~ 56 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-------------------------AEQPDIIILDLMLP 56 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HHCCSEEEECSSCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-------------------------hCCCCEEEEeccCC
Confidence 38999999999999999999999999999999999999886 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+++|+++++.+++ .+.+|||++|+..+......+++.|+++|+.||++.++|..+++.++.+
T Consensus 57 ~~~g~~~~~~l~~-------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 57 EIDGLEVAKTIRK-------TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SSCHHHHHHHHHH-------HCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHh-------CCCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 9999999999985 1468999999999888889999999999999999999999999988764
No 47
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.86 E-value=1.1e-20 Score=143.29 Aligned_cols=133 Identities=14% Similarity=0.258 Sum_probs=113.2
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.++||||||++..+..+..+|+..|+ .+..+.++.+|++.+..... ....||+||+|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~--------------------~~~~~dlvi~D 67 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYA--------------------AGRWPSIICID 67 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHT--------------------SSCCCSEEEEE
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhc--------------------cCCCCCEEEEc
Confidence 357999999999999999999999999 89999999999999873210 02689999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG-MDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G-~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.||+++|+++++.||+..+ ...+.+|||++|+..+......++..| +++||.||++.++|..+|++........
T Consensus 68 ~~l~~~~g~~~~~~l~~~~~--~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~~ 143 (146)
T 3ilh_A 68 INMPGINGWELIDLFKQHFQ--PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHHH 143 (146)
T ss_dssp SSCSSSCHHHHHHHHHHHCG--GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC----
T ss_pred CCCCCCCHHHHHHHHHHhhh--hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999996321 135679999999999999999999999 9999999999999999999988765443
No 48
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.86 E-value=4.6e-22 Score=149.92 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=109.0
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
...+||||||++..+..+..+|+..| |.+..+.++.+|++.+. ...||+||+|+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~D~ 67 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-------------------------DTRPGIVILDL 67 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-------------------------TCCCSEEEEEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-------------------------ccCCCEEEEeC
Confidence 34699999999999999999999999 99999999999988775 67899999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.||+++|+++++.+|+. .+.+|||++|+..+......+++.|+++||.||++.++|..+|++++..
T Consensus 68 ~l~~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 68 GGGDLLGKPGIVEARAL------WATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ETTGGGGSTTHHHHHGG------GTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCCCchHHHHHHHHHhh------CCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999963 3468999999999999999999999999999999999999999987764
No 49
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.86 E-value=3.4e-21 Score=146.11 Aligned_cols=123 Identities=26% Similarity=0.370 Sum_probs=110.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~D~ 141 (230)
.+++||||||++..+..+..+|+..||.+..+.++.+|++.+. . ..||+||+|+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~~dlvi~D~ 58 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS-------------------------GGWYPDLILMDI 58 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------TTCCCSEEEEES
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHh-------------------------cCCCCCEEEEec
Confidence 4579999999999999999999999999999999999999987 4 6899999999
Q ss_pred CCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 142 QMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 142 ~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
.||+ ++|+++++.+|+. +.+|||++|+..+......+++.|+++||.||++.++|..+|+.++++....
T Consensus 59 ~l~~~~~g~~~~~~l~~~-------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 59 ELGEGMDGVQTALAIQQI-------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp SCSSSCCHHHHHHHHHHH-------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHhC-------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 9995 9999999999852 4689999999998888889999999999999999999999999998865443
No 50
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.86 E-value=7.1e-21 Score=146.47 Aligned_cols=124 Identities=19% Similarity=0.304 Sum_probs=112.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++++||||||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~ 59 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-------------------------GTSVQLVISDM 59 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-------------------------TSCCSEEEEES
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-------------------------cCCCCEEEEec
Confidence 45679999999999999999999999999999999999999886 66799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG-MDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G-~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
.||+++|+++++.+++ ..+.+|||++|+..+......++..| +++||.||++.++|..+|+.++.+...
T Consensus 60 ~l~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 60 RMPEMGGEVFLEQVAK------SYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp SCSSSCHHHHHHHHHH------HCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH------hCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 24579999999999888889999998 999999999999999999998875443
No 51
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.86 E-value=6.6e-21 Score=142.65 Aligned_cols=123 Identities=22% Similarity=0.271 Sum_probs=105.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|+ .||.+..+.++.+|++.+. ...||+||+|+.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~~l 57 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-------------------------AHPPDVLISDVNM 57 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-------------------------HSCCSEEEECSSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCC
Confidence 4699999999999999999999 8999999999999999987 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.+|+. ...+.+|||++|+..+... ..++..|+++||.||++.++|..+|++++.+....
T Consensus 58 ~~~~g~~~~~~l~~~----~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 126 (133)
T 3nhm_A 58 DGMDGYALCGHFRSE----PTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAE 126 (133)
T ss_dssp SSSCHHHHHHHHHHS----TTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHhC----CccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhccc
Confidence 999999999999962 2245799999999887777 88999999999999999999999999999876544
No 52
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.86 E-value=1.5e-20 Score=144.29 Aligned_cols=132 Identities=17% Similarity=0.297 Sum_probs=111.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++||||||++..+..+...|+..|+ .+..+.++.+|++.+.... .........||+||+|+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~----------------~~~~~~~~~~dliilD~ 67 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDD----------------KSGRVSAGRAQLVLLDL 67 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTT----------------SSSGGGTTCBEEEEECS
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccc----------------cccccccCCCCEEEEeC
Confidence 47999999999999999999999998 8999999999999885100 00000146799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
.||+++|+++++.||+. +..+.+|||++|+..+......+++.|+++||.||++.++|..+|+++.....
T Consensus 68 ~l~~~~g~~~~~~lr~~----~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 68 NLPDMTGIDILKLVKEN----PHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp BCSSSBHHHHHHHHHHS----TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHhc----ccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999962 24567999999999999999999999999999999999999999998876443
No 53
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=5.2e-21 Score=144.90 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=109.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||||||++..+..+...|...||.+..+.++.++++.+. ...||+||+|+.||
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvllD~~l~ 59 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-------------------------RSKPQLIILDLKLP 59 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-------------------------HHCCSEEEECSBCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-------------------------hcCCCEEEEecCCC
Confidence 38999999999999999999999999999999999999887 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.|++ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+.
T Consensus 60 ~~~g~~l~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 60 DMSGEDVLDWINQ------NDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp SSBHHHHHHHHHH------TTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh------cCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999986 345789999999999999999999999999999999999999999888653
No 54
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.86 E-value=2.4e-20 Score=140.93 Aligned_cols=126 Identities=22% Similarity=0.338 Sum_probs=112.2
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHh-cCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKK-LGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~-~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
..++||||||++..+..+...|+. .||. +..+.++.+++..+. ...||+||+|
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~d 61 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-------------------------TVKPDVVMLD 61 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-------------------------HTCCSEEEEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-------------------------hcCCCEEEEe
Confidence 457999999999999999999999 8999 999999999999987 5579999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.||+++|+++++.+++. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+....
T Consensus 62 ~~l~~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 62 LMMVGMDGFSICHRIKST----PATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp TTCTTSCHHHHHHHHHTS----TTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred cccCCCcHHHHHHHHHhC----ccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc
Confidence 999999999999999851 2356799999999999998999999999999999999999999999999866544
No 55
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.86 E-value=8.5e-21 Score=141.84 Aligned_cols=120 Identities=20% Similarity=0.272 Sum_probs=107.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc-CCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKL-GAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++||+|||++..+..+...|... |+.+. .+.++.+++..+. ...||+||+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-------------------------~~~~dlvllD~~ 57 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-------------------------EKRPDILLLDII 57 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEecC
Confidence 58999999999999999999987 88765 7899999999987 446999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+++|+++++.+++. ..+.+|||++|+..+......+++.|+++||.||++.++|..+|++++++.
T Consensus 58 l~~~~g~~~~~~l~~~-----~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 58 MPHLDGLAVLERIRAG-----FEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp CSSSCHHHHHHHHHHH-----CSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHhc-----CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 9999999999999862 235679999999999999999999999999999999999999999988754
No 56
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.86 E-value=1.7e-20 Score=141.32 Aligned_cols=126 Identities=20% Similarity=0.372 Sum_probs=107.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+++||+|||++..+..+..+|+..|+.+..+.++.++++.+. ... |+||+|+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-------------------------~~~-dlvllD~ 58 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-------------------------HEH-KVVFMDV 58 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-------------------------TTC-SEEEEEC
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-------------------------ccC-CEEEEeC
Confidence 34679999999999999999999999999999999999988764 334 9999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.||+++|+++++.+++..+. ......+||++|+..+......+++.|+++||.||++.++|..+|++++.+.
T Consensus 59 ~lp~~~g~~~~~~l~~~~~~-~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 59 CMPGVENYQIALRIHEKFTK-QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CSSTTTTTHHHHHHHHHHC--CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CCCCCcHHHHHHHHHHhhhh-ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 99999999999999852211 0112246888999999888899999999999999999999999999888654
No 57
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86 E-value=1.9e-20 Score=142.18 Aligned_cols=131 Identities=19% Similarity=0.278 Sum_probs=112.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccC--C--CCccE
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHN--S--PHYDL 136 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~dl 136 (230)
.+++||||||++..+..+...|...|+ .+..+.++.++++.+.... ... . ..||+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~-------------------~~~~~~~~~~~dl 65 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTG-------------------SYCNPDIAPRPAV 65 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCC-------------------SSSCGGGCCCCSE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcc-------------------cccCcccCCCCcE
Confidence 457999999999999999999999998 8999999999999987100 000 0 67999
Q ss_pred EEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 137 ILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
||+|+.||+++|+++++.||+.. ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+...
T Consensus 66 vi~D~~l~~~~g~~~~~~l~~~~----~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 66 ILLDLNLPGTDGREVLQEIKQDE----VLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp EEECSCCSSSCHHHHHHHHTTST----TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHhCc----ccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999998621 12568999999999999999999999999999999999999999999876543
No 58
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.2e-20 Score=143.37 Aligned_cols=124 Identities=21% Similarity=0.299 Sum_probs=110.8
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCe--EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAG--VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
..+.+||||||++..+..+..+|+..|+. +..+.++.+|++.+. ...||+||+
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~ 67 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-------------------------AHLPDVALL 67 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-------------------------HHCCSEEEE
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-------------------------hcCCCEEEE
Confidence 45679999999999999999999999854 557999999999987 457999999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
|+.||+++|+++++.+++ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.++..
T Consensus 68 d~~l~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 68 DYRMPGMDGAQVAAAVRS------YELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp ETTCSSSCHHHHHHHHHH------TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred eCCCCCCCHHHHHHHHHh------cCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 999999999999999996 34678999999999999999999999999999999999999999999987643
No 59
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.86 E-value=9.1e-21 Score=146.01 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=111.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+++||||||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dliild~~l 57 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-------------------------ADFAGIVISDIRM 57 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-------------------------TTCCSEEEEESCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCCC
Confidence 469999999999999999999999999999999999998875 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
|+++|+++++.+++. .+.+|||++|+..+......++..|+++||.||++.++|..+|+.++.+...
T Consensus 58 ~~~~g~~~~~~l~~~------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 58 PGMDGLALFRKILAL------DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp SSSCHHHHHHHHHHH------CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh------CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999962 4579999999999888899999999999999999999999999999876544
No 60
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.85 E-value=1.1e-20 Score=138.73 Aligned_cols=118 Identities=24% Similarity=0.344 Sum_probs=107.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||+|||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~D~~l~ 56 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-------------------------TRKPDLIILDLGLP 56 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESEET
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 48999999999999999999999999999999999998876 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++ .+.+|+|++|+..+......+++.|+++|+.||++.++|..+++.++.+.
T Consensus 57 ~~~g~~~~~~l~~-------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 57 DGDGIEFIRDLRQ-------WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp TEEHHHHHHHHHT-------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHh-------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999983 24689999999999988899999999999999999999999999887653
No 61
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.85 E-value=8.9e-21 Score=144.48 Aligned_cols=128 Identities=22% Similarity=0.300 Sum_probs=112.8
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+++||||||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~d~ 60 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-------------------------KTHPHLIITEA 60 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEES
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-------------------------cCCCCEEEEcC
Confidence 34679999999999999999999999999999999999999987 44699999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKF 218 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~ 218 (230)
.||+++|+++++.|++. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+...+.
T Consensus 61 ~l~~~~g~~~~~~l~~~----~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~ 133 (147)
T 2zay_A 61 NMPKISGMDLFNSLKKN----PQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYEDL 133 (147)
T ss_dssp CCSSSCHHHHHHHHHTS----TTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHHcC----cccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999851 23567999999999999999999999999999999999999999999988665443
No 62
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.85 E-value=4.2e-21 Score=169.63 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=111.5
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS 145 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~ 145 (230)
+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-------------------------~~~~DlvllDi~mP~ 56 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-------------------------ELFFPVIVLDVWMPD 56 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HBCCSEEEEESEETT
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCCCCC
Confidence 7999999999999999999999999999999999999987 567999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
|||+++++.||+. .+.+|||++|++.+.+....+++.|+++||.||++.++|..+|++++.....
T Consensus 57 ~dG~ell~~lr~~------~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 57 GDGVNFIDFIKEN------SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSK 121 (368)
T ss_dssp EETTTHHHHHHHH------CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhh------CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999963 4568999999999999999999999999999999999999999999876543
No 63
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.85 E-value=1.7e-20 Score=144.00 Aligned_cols=123 Identities=26% Similarity=0.297 Sum_probs=110.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||||||++..+..+...|+. ||.+..+.++.+|++.+.. ..+||+||+|+.|
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~------------------------~~~~dlvi~D~~l 58 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK------------------------SDPFSVIMVDMRM 58 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH------------------------SCCCSEEEEESCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc------------------------CCCCCEEEEeCCC
Confidence 46999999999999999999975 8999999999999999872 3346999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG-MDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G-~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.+|+ ..+.+|||++|+..+......++..| +++||.||++.++|..+|..++.+....
T Consensus 59 ~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~ 127 (151)
T 3kcn_A 59 PGMEGTEVIQKARL------ISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLV 127 (151)
T ss_dssp SSSCHHHHHHHHHH------HCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh------cCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 34679999999999988999999999 9999999999999999999999865443
No 64
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.85 E-value=2.2e-20 Score=141.51 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=110.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+ |
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~-~ 57 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-------------------------REKIDLVFVDV-F 57 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-------------------------TSCCSEEEEEC-T
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-------------------------ccCCCEEEEeC-C
Confidence 469999999999999999999999999999999999999986 66899999999 9
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.+++ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+....
T Consensus 58 ~~~~g~~~~~~l~~------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 125 (142)
T 2qxy_A 58 EGEESLNLIRRIRE------EFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRV 125 (142)
T ss_dssp TTHHHHHHHHHHHH------HCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC----
T ss_pred CCCcHHHHHHHHHH------HCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcccc
Confidence 99999999999996 245699999999999999999999999999999999999999999998865444
No 65
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.85 E-value=8.7e-21 Score=158.49 Aligned_cols=122 Identities=23% Similarity=0.346 Sum_probs=111.7
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+..++||||||++..+..+..+|+..||.|..+.++.+|+..+. ...||+||+|+
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~DlvllD~ 89 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-------------------------EDHPDLILLDL 89 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEEC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEcC
Confidence 44579999999999999999999999999999999999999887 56799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
.||+++|+++++.||+ .+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+..
T Consensus 90 ~lp~~~G~~l~~~lr~-------~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 90 GLPDFDGGDVVQRLRK-------NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp CSCHHHHHHHHHHHHT-------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCCCCCHHHHHHHHHc-------CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999984 356899999999999999999999999999999999999999999988654
No 66
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.85 E-value=2.1e-20 Score=140.86 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=110.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlvi~d~~~ 57 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-------------------------EENPEVVLLDMNF 57 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-------------------------HSCEEEEEEETTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-------------------------cCCCCEEEEeCCc
Confidence 469999999999999999999999999999999999999987 5579999999999
Q ss_pred C-----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 G-----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p-----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
| +++|+++++.+++ ..+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+....
T Consensus 58 ~~~~~~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 130 (140)
T 2qr3_A 58 TSGINNGNEGLFWLHEIKR------QYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKDG 130 (140)
T ss_dssp TC-----CCHHHHHHHHHH------HCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC---
T ss_pred CCCCCCCccHHHHHHHHHh------hCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcccc
Confidence 9 9999999999996 346799999999988888999999999999999999999999999998765443
No 67
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.85 E-value=3.2e-20 Score=138.70 Aligned_cols=124 Identities=21% Similarity=0.324 Sum_probs=103.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+.+||||||++..+..+..+|++.||.+..+.++.++++.+. ...||+||+|+.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-------------------------TFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HTCCSEEEEESC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEecC
Confidence 3569999999999999999999999999999999999999887 567999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
||+++|+++++.+|+.. ..+..+|+++++.... ....+++.|+++||.||++.++|..+|++.......
T Consensus 60 l~~~~g~~~~~~l~~~~----~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 60 MPKLDGLDVIRSLRQNK----VANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp BTTBCHHHHHHHHHTTT----CSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHhcC----ccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCCC
Confidence 99999999999999621 1234566666665544 778999999999999999999999999998876543
No 68
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.85 E-value=1.1e-20 Score=152.61 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=110.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+.+||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvl~D~~l 58 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-------------------------PEQHGCLVLDMRM 58 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-------------------------TTSCEEEEEESCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-------------------------ccCCCEEEEeCCC
Confidence 458999999999999999999999999999999999998875 6679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++ ..+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+.
T Consensus 59 p~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 59 PGMSGIELQEQLTA------ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp SSSCHHHHHHHHHH------TTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh------cCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999996 345799999999998888899999999999999999999999999888754
No 69
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.85 E-value=3.6e-20 Score=139.63 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=111.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..++||||||++..+..+...|+..||.+. .+.++.+++..+. ...||+||+|+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-------------------------~~~~dlii~d~ 62 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-------------------------DLRPDIALVDI 62 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEES
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-------------------------hCCCCEEEEec
Confidence 457999999999999999999999999999 5999999999987 44699999999
Q ss_pred CCC-CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 142 QMG-SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 142 ~mp-~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
.|| +++|+++++.+++. +.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+....
T Consensus 63 ~~~~~~~g~~~~~~l~~~-------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 63 MLCGALDGVETAARLAAG-------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp SCCSSSCHHHHHHHHHHH-------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHhC-------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 998 79999999999962 5689999999999999999999999999999999999999999998765443
No 70
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.85 E-value=1.6e-20 Score=137.28 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=102.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~l~ 56 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-------------------------SGNYDLVILDIEMP 56 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEECSCCS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEECCCC
Confidence 38999999999999999999999999999999999999887 55799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
+++|+++++.+|+. .+.+|||++|+..+.. ..++..|+++|+.||++.++|..++++++
T Consensus 57 ~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 57 GISGLEVAGEIRKK------KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp SSCHHHHHHHHHHH------CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcc------CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 99999999999862 3568999999876554 67788999999999999999999998764
No 71
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.85 E-value=4.3e-21 Score=142.37 Aligned_cols=121 Identities=25% Similarity=0.361 Sum_probs=109.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-------------------------~~~~dlvi~D~~l~ 57 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-------------------------EPWPDLILLAWMLP 57 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-------------------------SSCCSEEEEESEET
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-------------------------ccCCCEEEEecCCC
Confidence 48999999999999999999999999999999999988775 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++++|+. ...+.+|||++|+..+......+++.|+++|+.||++.++|..+++.++++.
T Consensus 58 ~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 58 GGSGIQFIKHLRRE----SMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp TEEHHHHHHHHHTS----TTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHhC----cccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999852 1235799999999888888889999999999999999999999999988754
No 72
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.84 E-value=4.3e-20 Score=149.89 Aligned_cols=121 Identities=23% Similarity=0.313 Sum_probs=109.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcC-CeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLG-AGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g-~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.++||||||++..+..+..+|+..+ +.+ ..+.++.+|++.+. ...||+||+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-------------------------~~~~dlvllD~ 59 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-------------------------SLDPDLILLDL 59 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEET
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeC
Confidence 4699999999999999999999874 777 68999999999887 44699999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
.||+++|+++++.+|+ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+..
T Consensus 60 ~lp~~~g~~~~~~lr~------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 60 NMPGMNGLETLDKLRE------KSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp TSTTSCHHHHHHHHHH------SCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCcHHHHHHHHHH------hCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999996 3457899999999999999999999999999999999999999999988653
No 73
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.84 E-value=1.5e-20 Score=142.21 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=113.0
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~dlii~d~~ 60 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-------------------------KGFSGVVLLDIM 60 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------TCCCEEEEEESC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-------------------------hcCCCEEEEeCC
Confidence 4579999999999999999999999999999999999999987 667999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
||+++|+++++.+++. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+...
T Consensus 61 l~~~~g~~~~~~l~~~----~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 61 MPGMDGWDTIRAILDN----SLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp CSSSCHHHHHHHHHHT----TCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh----cccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999851 245679999999998888888899999999999999999999999998875433
No 74
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.84 E-value=6.7e-21 Score=144.17 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=101.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|+.. +.+..+.++.+|++.+. ...||+||+|+.|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-------------------------~~~~dlvi~D~~l 56 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-------------------------HHHPDLVILDMDI 56 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-------------------------HHCCSEEEEETTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeCCC
Confidence 469999999999999999999988 99999999999999987 4579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
|+++|+++++.+|+. ...+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.++..
T Consensus 57 ~~~~g~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 57 IGENSPNLCLKLKRS----KGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp ------CHHHHHHTS----TTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHcC----cccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999962 122679999999998888888999999999999999999999999999886543
No 75
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.84 E-value=7e-20 Score=140.69 Aligned_cols=123 Identities=22% Similarity=0.327 Sum_probs=112.1
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHh-cCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKK-LGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~-~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
..++||||||++..+..+...|+. .||.+. .+.++.+++..+. ...||+||+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-------------------------~~~~dlii~D 58 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-------------------------ETTPDIVVMD 58 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-------------------------TTCCSEEEEC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEe
Confidence 457999999999999999999998 799987 8999999999987 6679999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
+.||+++|+++++.+++. .+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+...
T Consensus 59 ~~l~~~~g~~~~~~l~~~------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 59 LTLPGPGGIEATRHIRQW------DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp SCCSSSCHHHHHHHHHHH------CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCE
T ss_pred cCCCCCCHHHHHHHHHHh------CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCcc
Confidence 999999999999999963 4568999999999999999999999999999999999999999999876543
No 76
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.84 E-value=8.6e-21 Score=168.27 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=106.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|++|
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-------------------------~~~~dlvllD~~m 59 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-------------------------SEQPDLVICDLRM 59 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-------------------------HSCCSEEEECCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-------------------------hCCCCEEEEcCCC
Confidence 469999999999999999999999999999999999999987 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~~~ 214 (230)
|++||+++++.||+ ..+.+|||++|+..+......+++.|+++||.||+ +.+.|..+|++++.+.
T Consensus 60 p~~~G~~~~~~lr~------~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 60 PQIDGLELIRRIRQ------TASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp SSSCTHHHHHHHHH------TTCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh------hCCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999996 34679999999999999999999999999999999 6888988888877653
No 77
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.84 E-value=4.3e-20 Score=141.87 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=101.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-CC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL-GA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~D 140 (230)
.++||||||++..+..+...|... |+ .+..+.++.+++..+. . ..||+||+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~-------------------------~~~~~dlvi~d 57 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLE-------------------------ADNTVDLILLD 57 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH-------------------------TTCCCSEEEEC
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHh-------------------------ccCCCCEEEEe
Confidence 479999999999999999999998 88 7889999999999987 5 789999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.||+++|+++++.+++. .+.+|||++|+..+......++..|+++||.||++.++|..+|+.++.+....
T Consensus 58 ~~l~~~~g~~~~~~l~~~------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 58 VNLPDAEAIDGLVRLKRF------DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp C------CHHHHHHHHHH------CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred CCCCCCchHHHHHHHHHh------CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 999999999999999963 45689999999988888999999999999999999999999999999866543
No 78
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.84 E-value=4.3e-20 Score=150.63 Aligned_cols=120 Identities=29% Similarity=0.421 Sum_probs=110.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||||||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-------------------------~~~~dlvllD~~l~ 57 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-------------------------NEPFDVVILDIMLP 57 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESCCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 68999999999999999999999999999999999999887 55799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+++|+++++.+|+ ..+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+..
T Consensus 58 ~~~g~~~~~~lr~------~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 58 VHDGWEILKSMRE------SGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp SSCHHHHHHHHHH------TTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHh------cCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999996 3457999999999888889999999999999999999999999999988653
No 79
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.84 E-value=5.6e-20 Score=139.05 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=105.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+...|+.. |.+..+.++.+++..+. ...||+||+|+.||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~lp 55 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-------------------------EEWVQVIICDQRMP 55 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-------------------------HSCEEEEEEESCCS
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-------------------------cCCCCEEEEeCCCC
Confidence 37999999999999999999876 99999999999999887 45799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc-CCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS-GMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~-G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+++|+++++.+++. .+.+|+|++|+..+......++.. |+++||.||++.++|..+++.++....
T Consensus 56 ~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 56 GRTGVDFLTEVRER------WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp SSCHHHHHHHHHHH------CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh------CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999862 456899999998887777788775 599999999999999999998887543
No 80
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.84 E-value=3.2e-20 Score=141.15 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=100.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHh--cCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKK--LGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~--~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
++||||||++..+..+...|.. .|+.+. .+.++.+++..+. ...||+||+|+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-------------------------~~~~dlvllD~ 57 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-------------------------KHPPNVLLTDV 57 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-------------------------TSCCSEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-------------------------cCCCCEEEEeC
Confidence 5899999999999999999973 578777 8999999999886 66799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.||+++|+++++.+++ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++...
T Consensus 58 ~lp~~~g~~l~~~l~~------~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 58 RMPRMDGIELVDNILK------LYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp CCSSSCHHHHHHHHHH------HCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh------hCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999986 245689999999988888889999999999999999999999999888654
No 81
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.83 E-value=4.4e-20 Score=148.95 Aligned_cols=118 Identities=30% Similarity=0.361 Sum_probs=107.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.+||||||++..+..+...|...||.+. .+.++.+++..+. ...||+||+|+.|
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-------------------------~~~~dlvi~D~~~ 68 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-------------------------LHKPDLVIMDVKM 68 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESSC
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-------------------------hcCCCEEEEeCCC
Confidence 5999999999999999999999999988 8999999999887 4469999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++. ...|||++|+..+......+++.|+++||.||++.++|..+|+.++.+.
T Consensus 69 p~~~g~~~~~~l~~~-------~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 69 PRRDGIDAASEIASK-------RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp SSSCHHHHHHHHHHT-------TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhc-------CCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999862 2349999999998888899999999999999999999999999888654
No 82
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.83 E-value=8.6e-20 Score=134.73 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=107.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||+|||++..+..+...|+..||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-------------------------~~~~dlvi~d~~~ 59 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-------------------------RDRPDLVVLAVDL 59 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-------------------------HHCCSEEEEESBC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-------------------------hcCCCEEEEeCCC
Confidence 358999999999999999999999999999999999999987 4469999999999
Q ss_pred C-CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 144 G-SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 144 p-~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
| +++|+++++.+|+. ...+.+|||++ +..+......+++.|+++|+.||++.++|..+|+.+++.
T Consensus 60 ~~~~~g~~~~~~l~~~----~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 60 SAGQNGYLICGKLKKD----DDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp GGGCBHHHHHHHHHHS----TTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhcC----ccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 9 99999999999962 12467999999 877888888999999999999999999999999988764
No 83
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.83 E-value=2e-20 Score=139.98 Aligned_cols=122 Identities=15% Similarity=0.207 Sum_probs=106.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||||||++..+..+..+|+..++.+..+.++++++..+. .. ||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-------------------------~~-~dlvi~D~~l 56 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-------------------------NK-QDIIILDLMM 56 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-------------------------CT-TEEEEEECCT
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-------------------------cC-CCEEEEeCCC
Confidence 469999999999999999999999889999999999887664 45 9999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh-----HhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA-----DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~-----~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
|+++|+++++.+|+ ..+.+|||++|+..+. .....++..|+++||.||++.++|..+|+++.......
T Consensus 57 ~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~~ 129 (135)
T 3eqz_A 57 PDMDGIEVIRHLAE------HKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAEG 129 (135)
T ss_dssp TTTHHHHHHHHHHH------TTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC---
T ss_pred CCCCHHHHHHHHHh------CCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcccc
Confidence 99999999999996 3467899999998775 56677889999999999999999999999988765444
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.83 E-value=5.3e-20 Score=150.86 Aligned_cols=122 Identities=25% Similarity=0.356 Sum_probs=111.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+||+|+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-------------------------~~~~dlvllD~~ 60 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-------------------------ENRPDAIVLDIN 60 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCC
Confidence 3479999999999999999999999999999999999999887 557999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
||+++|+++++.+++ ..+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+..
T Consensus 61 l~~~~g~~~~~~l~~------~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 61 MPVLDGVSVVTALRA------MDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp CSSSCHHHHHHHHHH------TTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh------cCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999996 2357999999999988888899999999999999999999999999987653
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.83 E-value=7.8e-20 Score=162.47 Aligned_cols=119 Identities=22% Similarity=0.377 Sum_probs=110.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-------------------------~~~~DlvllD~~mp 55 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-------------------------EKHFNVVLLDLLLP 55 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-------------------------HSCCSEEEEESBCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCCCC
Confidence 47999999999999999999999999999999999999987 56799999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
++||+++++.+++ ..+++|||++|+..+.+....+++.|+++||.||++.++|..+|++++...
T Consensus 56 ~~dG~ell~~lr~------~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 56 DVNGLEILKWIKE------RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp SSBHHHHHHHHHH------HCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh------hCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 9999999999996 345799999999999999999999999999999999999999999888654
No 86
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.83 E-value=2.3e-19 Score=135.82 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=108.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.++||||||++..+..+...|+..|+ .+..+.++.+++..+.... ......||+||+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~-------------------~~~~~~~dlii~D 66 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN-------------------KENKIHPKLILLD 66 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT-------------------TCCCCCCSEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc-------------------cccCCCCCEEEEe
Confidence 346899999999999999999999998 8999999999999987100 0001679999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+.||+++|+++++.+|+.. ..+.+|||++|+..+......+++.|+++||.||++.++|..++.......
T Consensus 67 ~~l~~~~g~~~~~~l~~~~----~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 67 INIPKMNGIEFLKELRDDS----SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp TTCTTSCHHHHHHHHTTSG----GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHcCc----cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999999998631 225799999999999999999999999999999999999999977655543
No 87
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.83 E-value=3.4e-19 Score=132.87 Aligned_cols=123 Identities=24% Similarity=0.345 Sum_probs=107.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCC-CccEEEEe
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP-HYDLILMD 140 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlvl~D 140 (230)
+..++||||||++..+..+...|...||.+..+.++.++++.+. .. .||+||+|
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-------------------------~~~~~dlvi~d 57 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK-------------------------SGAAIDGVVTD 57 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------TTCCCCEEEEE
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-------------------------cCCCCCEEEEe
Confidence 34579999999999999999999999999999999999999987 55 79999999
Q ss_pred cCCCC-CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 141 CQMGS-MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp~-~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.||+ ++|+++++.+++. .+.+|||++|+..+......++..| +|+.||++.++|..+|++++......
T Consensus 58 ~~l~~~~~g~~~~~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~~ 127 (132)
T 2rdm_A 58 IRFCQPPDGWQVARVAREI------DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREGH 127 (132)
T ss_dssp SCCSSSSCHHHHHHHHHHH------CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred eeCCCCCCHHHHHHHHHhc------CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 99997 9999999999963 3579999999998887777766665 79999999999999999998866544
No 88
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.82 E-value=7.3e-20 Score=165.02 Aligned_cols=121 Identities=27% Similarity=0.340 Sum_probs=110.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-------------------------~~~~dlvllD~~mp 56 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-------------------------RDLPDIILLDVMMP 56 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-------------------------HHCCSEEEEESCCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-------------------------cCCCCEEEEcCCCC
Confidence 48999999999999999999999999999999999999987 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
++||+++++.||+. +..+++|||++|+..+......+++.|+++||.||++.++|..+|+.++...
T Consensus 57 ~~~G~~~~~~l~~~----~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 57 GMDGFTVCRKLKDD----PTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp SSCHHHHHHHHHHS----TTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC----cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999862 2345799999999999999999999999999999999999999999887643
No 89
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.82 E-value=5.3e-19 Score=133.16 Aligned_cols=117 Identities=22% Similarity=0.264 Sum_probs=106.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+.+||||||++..+..+..+|+..||.+..+.++.+++..+. ...||+||
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlvi--- 67 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-------------------------IRNYDLVM--- 67 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-------------------------HSCCSEEE---
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-------------------------cCCCCEEE---
Confidence 45679999999999999999999999999999999999999987 55799999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCC-CceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~-~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~~~ 214 (230)
||+++|+++++.|++. + .+|||++|+..+......+++.|+++||.||+ +.++|..+|+.++.+.
T Consensus 68 -~~~~~g~~~~~~l~~~-------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 68 -VSDKNALSFVSRIKEK-------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp -ECSTTHHHHHHHHHHH-------STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred -EcCccHHHHHHHHHhc-------CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 8999999999999962 4 68999999999999999999999999999999 9999999999887654
No 90
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.81 E-value=2.2e-19 Score=135.89 Aligned_cols=123 Identities=29% Similarity=0.461 Sum_probs=103.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++||||||++..+..+..+|+..|+.+..+.++.++++.+. ...||+||+|+.|
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-------------------------~~~~dlvllD~~l 64 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-------------------------NRQFDVIIMDIQM 64 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-------------------------HSCCSEEEECTTC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-------------------------cCCCCEEEEeCCC
Confidence 358999999999999999999999999999999999999887 5579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
|+++|+++++.|++.... ...+.+||+++|+........ ..|+++||.||++.++|..+|+.++.+..
T Consensus 65 p~~~g~~~~~~l~~~~~~-~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 65 PVMDGLEAVSEIRNYERT-HNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CSSCHHHHHHHHHHHHHH-HTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCCcHHHHHHHHHhhhhh-cCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 999999999999863211 124578999999876554432 78999999999999999999999886543
No 91
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.81 E-value=5.2e-19 Score=134.01 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=104.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhc-CCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKL-GAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
..++||||||++..+..+...|... |+. +..+.++.++++.+. ...||+||+|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-------------------------~~~~dlvi~d 62 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-------------------------HNKVDAIFLD 62 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-------------------------HCCCSEEEEC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEe
Confidence 3479999999999999999999986 787 458899999999887 5579999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
+.||+++|+++++.+++ ..+..|||++|+.. +....++..|+++||.||++.++|..+|++++......
T Consensus 63 ~~l~~~~g~~~~~~l~~------~~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 63 INIPSLDGVLLAQNISQ------FAHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp SSCSSSCHHHHHHHHTT------STTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHc------cCCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999985 23457899999873 36778899999999999999999999999988765443
No 92
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.81 E-value=2.6e-19 Score=147.84 Aligned_cols=118 Identities=27% Similarity=0.423 Sum_probs=109.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlvilD~~l~ 60 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-------------------------ELRPDLVLLDLMLP 60 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-------------------------HHCCSEEEEESSCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-------------------------hCCCCEEEEeCCCC
Confidence 58999999999999999999999999999999999999887 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+++. ..+|||++|+..+......++..|+++||.||++.++|..+|+.++.+.
T Consensus 61 ~~~g~~~~~~lr~~-------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 61 GMNGIDVCRVLRAD-------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp SSCHHHHHHHHHTT-------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999851 2689999999999888999999999999999999999999999998764
No 93
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.81 E-value=3.1e-19 Score=146.10 Aligned_cols=118 Identities=30% Similarity=0.407 Sum_probs=109.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||||||++..+..+..+|+..||.+..+.++.++++.+. ...||+||+|+.||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-------------------------~~~~dlvllD~~l~ 59 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-------------------------RAGADIVLLDLMLP 59 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-------------------------HHCCSEEEEESSCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-------------------------ccCCCEEEEECCCC
Confidence 58999999999999999999999999999999999999887 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+|+. +.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+.
T Consensus 60 ~~~g~~~~~~l~~~-------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 60 GMSGTDVCKQLRAR-------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp SSCHHHHHHHHHHH-------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHcC-------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999861 4689999999988888899999999999999999999999999998864
No 94
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.81 E-value=2.6e-19 Score=136.28 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=93.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc-CCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCC-CccEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL-GAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP-HYDLIL 138 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~-g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlvl 138 (230)
..+.+||||||++..+..+..+|+.. |+.+. .+.++.+|++.+. .. .||+||
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-------------------------~~~~~dlvi 65 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-------------------------AQPNVDLIL 65 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-------------------------HCTTCCEEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh-------------------------cCCCCCEEE
Confidence 34569999999999999999999998 88864 8999999999987 44 799999
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEec--CCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTA--LVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~--~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
+|+.||+++|+++++.+|+. ...|++++++ ..+......+++.|+++||.||++..+|...+
T Consensus 66 lD~~l~~~~g~~~~~~lr~~-------~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 66 LDIEMPVMDGMEFLRHAKLK-------TRAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp ECTTSCCCTTCHHHHHHHHH-------CCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred EeCCCCCCCHHHHHHHHHhc-------CCCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 99999999999999999862 2378999987 55566778899999999999999966554443
No 95
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.80 E-value=3e-19 Score=129.73 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=103.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
.+||+|||++..+..+.+.|+..||.+..+.++.+++..+. ...||+||+|+.||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-------------------------~~~~dlii~d~~~~ 56 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-------------------------LLQPIVILMAWPPP 56 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-------------------------HHCCSEEEEECSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-------------------------hcCCCEEEEecCCC
Confidence 58999999999999999999999999999999999999987 44699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+++|+++++.+++. ...+.+|||++|+..+.. .++..|+++|+.||++.++|..+++.++.
T Consensus 57 ~~~~~~~~~~l~~~----~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 57 DQSCLLLLQHLREH----QADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCTHHHHHHHHHHT----CCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhc----cccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 99999999999862 123679999999987765 88999999999999999999999886654
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.80 E-value=9.5e-19 Score=136.51 Aligned_cols=122 Identities=24% Similarity=0.342 Sum_probs=103.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcC-Ce-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLG-AG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
..++||||||++..+..+..+|+..| +. +..+.++.+|++.+. ...||+||+|
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-------------------------~~~~dlvilD 78 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-------------------------ELKPDVITMD 78 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEC
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-------------------------cCCCCEEEEe
Confidence 34799999999999999999999875 33 457899999999987 4469999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChH--hHHHHHHcCCCeeEeCCCC---------HHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD--NERECFNSGMDTFLNKPAQ---------EHLLAAAIVE 209 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~--~~~~~~~~G~~~~L~KP~~---------~~~L~~~l~~ 209 (230)
+.||+++|+++++.||+. .+ +|||++|+..+.. ....+++.|+++||.||++ .+++.++++.
T Consensus 79 ~~l~~~~g~~l~~~lr~~------~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~ 151 (164)
T 3t8y_A 79 IEMPNLNGIEALKLIMKK------AP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQ 151 (164)
T ss_dssp SSCSSSCHHHHHHHHHHH------SC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc------CC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999962 23 7999999977654 5678999999999999999 6888888888
Q ss_pred HHHhccC
Q 026988 210 TIARKSH 216 (230)
Q Consensus 210 ~l~~~~~ 216 (230)
.+.....
T Consensus 152 ~~~~~~~ 158 (164)
T 3t8y_A 152 AMNVDPR 158 (164)
T ss_dssp HTTSCC-
T ss_pred HhCCCch
Confidence 8876543
No 97
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.79 E-value=8.4e-20 Score=149.86 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=109.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC-CeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG-AGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g-~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
++||||||++..+..+..+|...| |.+ ..+.++.++++.+. ...||+||+|+.
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-------------------------~~~~dlvllD~~ 56 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-------------------------AARPDVAVLDVR 56 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-------------------------HHCCSEEEECSE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-------------------------hcCCCEEEEeCC
Confidence 589999999999999999999887 874 57999999999987 446999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
||+++|+++++.+|+. .+.+|||++|+..+......+++.|+++||.||++.++|..+|+.++.+..
T Consensus 57 lp~~~g~~~~~~lr~~------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 57 LPDGNGIELCRDLLSR------MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp ETTEEHHHHHHHHHHH------CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHh------CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999962 456999999999999999999999999999999999999999999988654
No 98
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.79 E-value=6.4e-21 Score=140.50 Aligned_cols=120 Identities=24% Similarity=0.338 Sum_probs=108.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
..+||+|||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~dlvi~d~~~ 57 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-------------------------SKTPDVLLSDIRM 57 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-------------------------SCCCSCEEECSCS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-------------------------cCCCCEEEEeeec
Confidence 458999999999999999999999999999999999998875 5679999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
|+++|+++++.+++ ..+.+|+|++|+..+......+++.|+++|+.||++.++|..+++.++.+.
T Consensus 58 ~~~~g~~~~~~l~~------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 58 PGMDGLALLKQIKQ------RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp SHHHHCSTHHHHHH------HCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHh------hCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999986 245689999999888888888999999999999999999999999888653
No 99
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.79 E-value=2e-19 Score=135.71 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=101.8
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEEe
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILMD 140 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~D 140 (230)
..+.+||+|||++..+..+...|+..||.+..+.++.+++..+. . ..||+||+|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~~dlvilD 67 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-------------------------QLSTCDLLIVS 67 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-------------------------GGGSCSEEEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-------------------------hCCCCCEEEEe
Confidence 55679999999999999999999999999999999999999876 5 679999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEe-cCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT-ALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls-~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+.||+++|+++++.+|+ ..+.+|||++| +..+... ..++ +++|+.||++.++|..+|+.++.+.
T Consensus 68 ~~l~~~~g~~~~~~l~~------~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 68 DQLVDLSIFSLLDIVKE------QTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp TTCTTSCHHHHHHHHTT------SSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCCCCCHHHHHHHHHh------hCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999985 34679999999 8776655 5555 9999999999999999999877654
No 100
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.79 E-value=3.8e-19 Score=158.38 Aligned_cols=121 Identities=26% Similarity=0.340 Sum_probs=105.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC-CCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKK-LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS-PHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~D~ 141 (230)
.++||||||++..+..+..+|+. .|+.+..+.|+.+|++.+. . ..||+||+|+
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~-------------------------~~~~~DlvllDi 57 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILE-------------------------SCGHVDIAICDL 57 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHH-------------------------HHSCEEEEEECS
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHh-------------------------hCCCCCEEEEeC
Confidence 46999999999999999999998 5789999999999999987 4 4799999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh-----HhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA-----DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~-----~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
.||+|||+++++++|+. .+..+||++|+.... .....+++.|+++||.||++.++|..+|++++....
T Consensus 58 ~mP~~dG~ell~~l~~~------~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 58 QMSGMDGLAFLRHASLS------GKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp SCSSSCHHHHHHHHHHH------TCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhc------CCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 99999999999999863 345677777776665 556788899999999999999999999999887654
No 101
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.79 E-value=1.7e-19 Score=147.71 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=105.1
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHh-cCCeEEE-EcCcHHHHHH-HHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKK-LGAGVTL-VKDGEAAVEA-MTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~-~g~~v~~-~~~~~~al~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
..++||||||++..+..+..+|+. .|+.+.. +.++.+++.. +. ...||+||+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~-------------------------~~~~dlvll 60 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE-------------------------SRSIQMLVI 60 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG-------------------------GGGCCEEEE
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh-------------------------ccCCCEEEE
Confidence 347999999999999999999995 5888754 4566665543 33 457999999
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
|+.||++||+++++.||+. ..+.+|||++|+..+......++..|+++||.||++.++|..+|+.++.+...
T Consensus 61 D~~mp~~~G~~~~~~lr~~-----~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 61 DYSRISDDVLTDYSSFKHI-----SCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp EGGGCCHHHHHHHHHHHHH-----HCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCB
T ss_pred eCCCCCCCHHHHHHHHHHh-----hCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEe
Confidence 9999999999999999851 24568999999999888889999999999999999999999999999886543
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.78 E-value=4.7e-19 Score=154.50 Aligned_cols=119 Identities=26% Similarity=0.312 Sum_probs=106.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~-~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..+||||||++..+..+..+|. ..||.+..+.++.+|++.+. ...||+||+|+.
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-------------------------~~~~dlvl~D~~ 72 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-------------------------QIKPTVILQDLV 72 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-------------------------HHCCSEEEEESB
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-------------------------hCCCCEEEEeCC
Confidence 3579999999999999999996 46899999999999999987 446999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
||++||+++++.||+. +..+.+|||++|+..+......+++.|+++||.||++.++|..++...+
T Consensus 73 mp~~~G~~~~~~l~~~----~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 73 MPGVDGLTLLAAYRGN----PATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp CSSSBHHHHHHHHTTS----TTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC----cccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 9999999999999852 2346799999999999999999999999999999999999999998764
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.78 E-value=9.3e-19 Score=140.15 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.+++||||||++..+..+...|...||.+..+.++.+++ ...||+||+|+
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-----------------------------~~~~dlvl~D~ 60 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----------------------------DVPVDVVFTSI 60 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-----------------------------SSCCSEEEEEC
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-----------------------------CCCCCEEEEeC
Confidence 4567999999999999999999999999999888876543 23699999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
.||+++|. +++.++. ..+.+|||++|+..+......+++.|+++||.||++.++|..+|..++.+.
T Consensus 61 ~mp~~~g~-l~~~~~~------~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 61 FQNRHHDE-IAALLAA------GTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp CSSTHHHH-HHHHHHH------SCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred CCCccchH-HHHHHhc------cCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 99999998 8888875 126799999999999999999999999999999999999999998887654
No 104
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.78 E-value=2.2e-18 Score=140.25 Aligned_cols=117 Identities=20% Similarity=0.361 Sum_probs=106.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||||||++..+..+...|+..| .+..+.++.++++.+ ..||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---------------------------~~~dlvllD~~lp 54 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---------------------------EAFHVVVLDVMLP 54 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---------------------------SCCSEEEEESBCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---------------------------CCCCEEEEeCCCC
Confidence 589999999999999999999988 888999999887643 4699999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhcc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+++|+++++.+++. .+.+|||++|+..+......+++.|+++|+.||++.++|..+|+.++.+..
T Consensus 55 ~~~g~~~~~~lr~~------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 55 DYSGYEICRMIKET------RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (220)
T ss_dssp SSBHHHHHHHHHHH------CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHhc------CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 99999999999963 356999999999999999999999999999999999999999999998753
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.77 E-value=5.8e-18 Score=138.02 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=106.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++||||||++..+..+..+|...||.+..+.++.+|+..+. ...||+|| ||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-------------------------~~~~dlvi----lp 51 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-------------------------IRNYDLVM----VS 51 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-------------------------TSCCSEEE----EC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-------------------------cCCCCEEE----eC
Confidence 47999999999999999999999999999999999999886 66899999 99
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHHHHHhc
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPA-QEHLLAAAIVETIARK 214 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~-~~~~L~~~l~~~l~~~ 214 (230)
+++|+++++.+|+. ...+|||++|+..+......++..|+++|+.||+ +.++|..+|+.++.+.
T Consensus 52 ~~~g~~~~~~lr~~------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 52 DKNALSFVSRIKEK------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp CTTHHHHHHHHHHH------CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHhC------CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 99999999999962 1269999999999999999999999999999999 9999999999998765
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.73 E-value=3.5e-17 Score=143.54 Aligned_cols=119 Identities=19% Similarity=0.326 Sum_probs=103.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-CCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL-GAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.++||||||++..+..+..+|+.. ||. +..+.++.+|++.+. ...||+|++|+
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-------------------------~~~pDlVllDi 57 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-------------------------KFNPDVLTLDV 57 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-------------------------HHCCSEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-------------------------ccCCCEEEEEC
Confidence 469999999999999999999986 888 568999999999987 44699999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh--HhHHHHHHcCCCeeEeCCCCH---------HHHHHHHHHH
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA--DNERECFNSGMDTFLNKPAQE---------HLLAAAIVET 210 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~--~~~~~~~~~G~~~~L~KP~~~---------~~L~~~l~~~ 210 (230)
.||++||+++++.|++ ..+ +|||++|+..+. +...++++.|+++||.||++. ++|...|+.+
T Consensus 58 ~mp~~dGlell~~l~~------~~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~ 130 (349)
T 1a2o_A 58 EMPRMDGLDFLEKLMR------LRP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTA 130 (349)
T ss_dssp CCSSSCHHHHHHHHHH------SSC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh------cCC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999985 223 899999998765 347889999999999999984 7888888887
Q ss_pred HHhc
Q 026988 211 IARK 214 (230)
Q Consensus 211 l~~~ 214 (230)
.+.+
T Consensus 131 ~~~~ 134 (349)
T 1a2o_A 131 ARAR 134 (349)
T ss_dssp HHCC
T ss_pred Hhhh
Confidence 7644
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.72 E-value=1.3e-17 Score=140.10 Aligned_cols=103 Identities=18% Similarity=0.358 Sum_probs=85.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKK-LGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.+||||||++..+..+...|.. .|+.+.. .++.+++..+. ...||+||+|++|
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~-------------------------~~~~dlvllD~~m 58 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQ-------------------------GDEYVVALVDLTL 58 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCC-------------------------TTTEEEEEEESCB
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhh-------------------------cCCCcEEEEeCCC
Confidence 5899999999999999999976 4777754 45555544332 4579999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHH
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEH 201 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~ 201 (230)
|++||+++++++|+ ..+|||++|+..+.+....+++.|+++|+.||+...
T Consensus 59 P~~~G~~~~~~lr~--------~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 59 PDAPSGEAVKVLLE--------RGLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp TTBTTSHHHHHHHH--------TTCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred CCCCHHHHHHHHHh--------CCCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 99999999999985 248999999999999999999999999999997543
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.70 E-value=2.1e-17 Score=158.08 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=107.8
Q ss_pred cEEEEEeccH-HH-------HHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCC-Ccc
Q 026988 65 LSVLLVEDQA-VL-------QRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP-HYD 135 (230)
Q Consensus 65 ~~iLiVdd~~-~~-------~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d 135 (230)
|+||||||++ .. ++.|...|+..||.|..+.|+++|+..+. .. .||
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~-------------------------~~~~~d 55 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILS-------------------------SNEAID 55 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-------------------------TTCCCS
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-------------------------cCCCCc
Confidence 4899999999 88 99999999999999999999999999886 44 599
Q ss_pred EEEEecCCCC----CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCC-hHhHHHHHHcCCCeeEeCCCCHHH-HHHHHHH
Q 026988 136 LILMDCQMGS----MDGCKATRVIRRLEAEAETGQSIPIIAFTALVT-ADNERECFNSGMDTFLNKPAQEHL-LAAAIVE 209 (230)
Q Consensus 136 lvl~D~~mp~----~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~-~~~~~~~~~~G~~~~L~KP~~~~~-L~~~l~~ 209 (230)
+||+|++||+ +||+++++.||+. ...+||+++|+..+ ..+....+..|+|+|+.||++..+ |.++|+.
T Consensus 56 ~vilDi~lp~~~~~~~G~~ll~~iR~~------~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a 129 (755)
T 2vyc_A 56 CLMFSYQMEHPDEHQNVRQLIGKLHER------QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVA 129 (755)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHHHHHH------STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHH
T ss_pred EEEEeCCCCcccccccHHHHHHHHHHh------CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHH
Confidence 9999999999 9999999999973 34699999999877 777888899999999999999999 8899998
Q ss_pred HHHhc
Q 026988 210 TIARK 214 (230)
Q Consensus 210 ~l~~~ 214 (230)
.+++.
T Consensus 130 ~~rr~ 134 (755)
T 2vyc_A 130 AMTRY 134 (755)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.24 E-value=2.1e-10 Score=103.01 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=100.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+.+|++|||+......+...|... +.+....++.++.. .. ...||++++|+.
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~-~~-------------------------~~~~dlil~D~~ 203 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKAKI-SA-------------------------GGPVDLVIVNAA 203 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTTT-SEEEEECCHHHHHH-HH-------------------------HSSCSEEEEETT
T ss_pred CCCeEEEECCchhhHHHHHHHHhcc-cceeeccCHHHHhh-hc-------------------------cCCCCEEEEecC
Confidence 3458999999999988888888654 66777777777652 22 346899999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
||+|+|+++++.+|.. .....+|++++|+.........++..|+++|+.||+...++...+..++.++
T Consensus 204 mp~~dG~~~~~~ir~~----~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 204 AKNFDGLRFTAALRSE----ERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp CSSSCHHHHHHHHHTS----GGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhC----ccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999863 3346799999999999998999999999999999999999998887776543
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.20 E-value=1.2e-11 Score=100.75 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=76.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCc
Q 026988 89 AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSI 168 (230)
Q Consensus 89 ~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~ 168 (230)
+.|..+.++.++++.+. ...||++|+|+.||+++|+++++.||+.. +..
T Consensus 6 ~~v~~~~~~~~a~~~~~-------------------------~~~~dlvl~D~~~p~~~g~~~~~~l~~~~------~~~ 54 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK-------------------------ELKPDIVTMDITMPEMNGIDAIKEIMKID------PNA 54 (237)
T ss_dssp EEEECCCSSSTTHHHHH-------------------------HHCCSCEEEECCSTTSSHHHHHHHHHHHS------SSC
T ss_pred EEEEECCCHHHHHHHHH-------------------------hcCCCEEEEeCCCCCCCHHHHHHHHHHhC------CCC
Confidence 34556889999999887 44699999999999999999999998632 234
Q ss_pred eEEEEecCCChHhHHHHHHcCCCeeEeCC--CCHHHHHHHHHHHHHhc
Q 026988 169 PIIAFTALVTADNERECFNSGMDTFLNKP--AQEHLLAAAIVETIARK 214 (230)
Q Consensus 169 pii~ls~~~~~~~~~~~~~~G~~~~L~KP--~~~~~L~~~l~~~l~~~ 214 (230)
++++++.....+....+++.|+++|+.|| ++..++...+.+.+...
T Consensus 55 ~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~~ 102 (237)
T 3cwo_X 55 KIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQ 102 (237)
T ss_dssp CEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTGG
T ss_pred CEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCCC
Confidence 55666665668888999999999999999 78888888888877643
No 111
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.91 E-value=3.4e-05 Score=63.75 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=73.2
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+.+.+||||||++..+..+.++|..+|+.+..+.+. . ...+|++|+|
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~-------~-------------------------~~~~~~ii~d 55 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ-------E-------------------------PTPEDVLITD 55 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC-------C-------------------------CCTTCEEEEE
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC-------C-------------------------CCcCcEEEEc
Confidence 3678899999999999999999999999999887641 1 4579999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+.++...+. ..++.++....... ...+...++.||+...++...+.+++.
T Consensus 56 ~~~~~~~~~------------------~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 56 EVVSKKWQG------------------RAVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp SSCSCCCCS------------------SEEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred CCCcccccc------------------ceEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHhh
Confidence 999875431 12555655432111 123456799999999999888887764
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.70 E-value=5.7e-05 Score=71.69 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHH
Q 026988 76 LQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVI 155 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~l 155 (230)
..+.|...|++.||+|..+.+.++++..+.. ...+++|++||.++ +.+++++|
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~------------------------~~~i~avIld~d~~---~~~ll~~I 70 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIEN------------------------NARLCGVIFDWDKY---NLELCEEI 70 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHH------------------------CTTEEEEEEEHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh------------------------CCCceEEEEecccc---HHHHHHHH
Confidence 4456779999999999999999999999972 55799999999986 78899999
Q ss_pred HHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCC-HHHHHHHHHHHHH
Q 026988 156 RRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAAAIVETIA 212 (230)
Q Consensus 156 r~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~-~~~L~~~l~~~l~ 212 (230)
|+ .+..+||++++..............++++|+.+..+ .+.+...|.+...
T Consensus 71 r~------~~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (715)
T 3n75_A 71 SK------MNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTD 122 (715)
T ss_dssp HH------HCTTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHHHHH
T ss_pred HH------hCCCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHHHHH
Confidence 97 456799999998765433322224578899998864 4555555544444
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.50 E-value=0.0014 Score=46.22 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=82.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
....||+|..|-.+--.+++++....|++.+...-. .....|+|+|.+.
T Consensus 11 ~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-------------------------------~e~~AdlIfCEYl 59 (121)
T 3q7r_A 11 GPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-------------------------------QELSADLVVCEYS 59 (121)
T ss_dssp CCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-------------------------------CCTTEEEEEEEGG
T ss_pred CCcEEEEEecCchhhHHHHHhcCCcceeEEeccccC-------------------------------CcccceeEEEeee
Confidence 346899999888888999999987888888775431 1456899999997
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+-..+ |.+ .......-+|++-..-+++.....++.|+. ||..|+++.-+.++|+..+++.
T Consensus 60 LLPe~-------ifS----~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 60 LLPRE-------IRS----PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp GSCTT-------CCC----CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred cChHH-------hcC----CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 63221 111 112234457777777788889999999999 9999999999999999988864
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.79 E-value=0.027 Score=43.24 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=82.5
Q ss_pred CCcEEEEE----eccHHHHHHHHHHHHhcCCeEEEE---cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 63 EGLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLV---KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
.+.+|++. |.++.-...+..+|+..||+|... ...++..+.+. ...||
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~-------------------------~~~~d 71 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV-------------------------QEDVD 71 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH-------------------------HTTCS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------hcCCC
Confidence 34578877 788888889999999999999854 34556666655 56799
Q ss_pred EEEEecCCCC-CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 136 LILMDCQMGS-MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 136 lvl~D~~mp~-~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+|.+...+.. +. -.++++.+|+. ...+++|+ +.+.........+.+.|++.++..--+..+....+..++..
T Consensus 72 iV~lS~~~~~~~~~~~~~i~~L~~~-----g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 72 VIGVSILNGAHLHLMKRLMAKLREL-----GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHT-----TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeechhhHHHHHHHHHHHHhc-----CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 9999988763 22 24456666641 11345544 45555555666677899998676555666777777777765
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
+
T Consensus 146 ~ 146 (161)
T 2yxb_A 146 K 146 (161)
T ss_dssp H
T ss_pred h
Confidence 3
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.13 E-value=0.021 Score=45.30 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=53.7
Q ss_pred CccEEEEec-CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE------eCCCCHHHHHH
Q 026988 133 HYDLILMDC-QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL------NKPAQEHLLAA 205 (230)
Q Consensus 133 ~~dlvl~D~-~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L------~KP~~~~~L~~ 205 (230)
..++++.++ .++.++|+. ++.|++.. ...++|+|.+++..+.++..++++.|+++++ .+|++..++.+
T Consensus 144 ~~~vli~~~~~~g~~~g~~-~~~i~~~~----~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~ 218 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYD-TEMIRFVR----PLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKE 218 (237)
T ss_dssp CSEEEEEETTTTTCCSCCC-HHHHHHHG----GGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHH
T ss_pred CCeEEEEecCCCCcccccc-HHHHHHHH----HhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHH
Confidence 456888887 566677754 34444322 2347899999999999999999999999984 78999998877
Q ss_pred HHH
Q 026988 206 AIV 208 (230)
Q Consensus 206 ~l~ 208 (230)
.+.
T Consensus 219 ~l~ 221 (237)
T 3cwo_X 219 YLK 221 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.67 E-value=0.24 Score=36.74 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=73.5
Q ss_pred eccHHHHHHHHHHHHhcCCeEE---EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCC-
Q 026988 71 EDQAVLQRIGIRMLKKLGAGVT---LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSM- 146 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~- 146 (230)
|-+..-...+..+|+..||+|. .....++.++... ...+|+|.+...+...
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~-------------------------~~~~d~v~lS~~~~~~~ 68 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI-------------------------ETKADAILVSSLYGQGE 68 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH-------------------------HHTCSEEEEEECSSTHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------hcCCCEEEEEecCcCcH
Confidence 4555666788899999999987 3456777777766 4579999999888532
Q ss_pred C-HHHHHHHHHHhhhhhhcCCCceEEEEecCC--ChH----hHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 147 D-GCKATRVIRRLEAEAETGQSIPIIAFTALV--TAD----NERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 147 d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~--~~~----~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
. ..++++.+++. ..++++|+ +.+.. ..+ ....+.+.|++.|+.---+..++...+...+.
T Consensus 69 ~~~~~~i~~l~~~-----g~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~~ 135 (137)
T 1ccw_A 69 IDCKGLRQKCDEA-----GLEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp HHHTTHHHHHHHT-----TCTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-----CCCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHhC
Confidence 2 23456666642 12246654 44432 111 24568899999888776778888777766543
No 117
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.00 E-value=0.56 Score=38.77 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC-----CCHHHH
Q 026988 78 RIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS-----MDGCKA 151 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~-----~dg~~l 151 (230)
-...+.|.+.||.+. .+.+.-..-..+. ...+++| +.+..|- ...+++
T Consensus 125 v~aa~~L~~~Gf~Vlpy~~dd~~~akrl~-------------------------~~G~~aV-mPlg~pIGsG~Gi~~~~l 178 (265)
T 1wv2_A 125 LKAAEQLVKDGFDVMVYTSDDPIIARQLA-------------------------EIGCIAV-MPLAGLIGSGLGICNPYN 178 (265)
T ss_dssp HHHHHHHHTTTCEEEEEECSCHHHHHHHH-------------------------HSCCSEE-EECSSSTTCCCCCSCHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHH-------------------------HhCCCEE-EeCCccCCCCCCcCCHHH
Confidence 345566667899987 3544444334443 3357777 5555442 223788
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHHHH
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIVETI 211 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~~~l 211 (230)
++.+++ ..++|||+=.+-..+++...+++.|+++++. |--++..+..++...+
T Consensus 179 I~~I~e-------~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 179 LRIILE-------EAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHH-------HCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHh-------cCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 888875 2468999988888999999999999999864 5444666666555544
No 118
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=92.35 E-value=0.056 Score=47.07 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=51.5
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccCCCCCCCCCCCCCC----CCCCCC-----CCCCccccccCCCcEEEEE
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPVTNNIIPQAEGSSS----SCPVND-----DVTGVDEKKVLEGLSVLLV 70 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~~~~~~p~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~iLiV 70 (230)
|+|+++.++.+||+++++|..|.|++|+ .+|......+......+ +.|... .... ..-....+..++.+
T Consensus 215 L~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~~~~~~l~v~vg~~~~aiP~~~V~e~~~~~~-~~i~~~~~~~vl~v 293 (379)
T 1b3q_A 215 MDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISK-EDIQRVQDRDVIVI 293 (379)
T ss_dssp SHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCEEEEEEEEEETTEEEEEEGGGEEEEECCBS-TTCEEETTEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCccccceEEEEEECCEEEccchheeeEEEeeCH-HHeEEeCCccEEEE
Confidence 6899999999999999999999999999 55654332211000000 000000 0000 00111245689999
Q ss_pred eccHHHHHHHHHHHHh
Q 026988 71 EDQAVLQRIGIRMLKK 86 (230)
Q Consensus 71 dd~~~~~~~l~~~L~~ 86 (230)
+|+......|.++|..
T Consensus 294 rg~~vpl~~L~~lL~~ 309 (379)
T 1b3q_A 294 RGEVIPVYRLWEVLQI 309 (379)
T ss_dssp TTEEEEEEEHHHHTTC
T ss_pred CCcEEeEEEHHHHhCC
Confidence 9988887777777764
No 119
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=91.97 E-value=0.054 Score=47.21 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=28.8
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccC
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPV 32 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~ 32 (230)
|+|++.+++.|||++++++..|.|++|+ .+|.
T Consensus 317 L~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 317 LPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA 349 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHHHHHhCCEEEEEecCCCceEEEEEecC
Confidence 6899999999999999999999999998 4454
No 120
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=91.91 E-value=2.6 Score=34.47 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=73.3
Q ss_pred CcEEEEE----eccHHHHHHHHHHHHhcCCeEEEE---cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 64 GLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLV---KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 64 ~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
+.+||+. |-+..-...+..+|+..||+|... -..++..+.+. ...||+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~-------------------------~~~~d~ 177 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ-------------------------KEKPIM 177 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH-------------------------HHCCSE
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCE
Confidence 3478777 677788889999999999998644 35566666665 457999
Q ss_pred EEEecCCCC-CCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 137 ILMDCQMGS-MDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 137 vl~D~~mp~-~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
|.+...++. +.. .++++.+|+ .+..+||++=-...+.+ . +...|++.|-.-. .+....+..++..
T Consensus 178 V~lS~l~~~~~~~~~~~i~~l~~------~~~~~~v~vGG~~~~~~-~--~~~igad~~~~da---~~av~~~~~l~~~ 244 (258)
T 2i2x_B 178 LTGTALMTTTMYAFKEVNDMLLE------NGIKIPFACGGGAVNQD-F--VSQFALGVYGEEA---ADAPKIADAIIAG 244 (258)
T ss_dssp EEEECCCTTTTTHHHHHHHHHHT------TTCCCCEEEESTTCCHH-H--HHTSTTEEECSST---THHHHHHHHHHTT
T ss_pred EEEEeeccCCHHHHHHHHHHHHh------cCCCCcEEEECccCCHH-H--HHHcCCeEEECCH---HHHHHHHHHHHcc
Confidence 999998864 443 446777775 33446666544433433 2 3478987665433 4555555665553
No 121
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=91.57 E-value=0.058 Score=47.06 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=28.6
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccC
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPV 32 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~ 32 (230)
|+|++.+++.|||++++++..|.|++|+ .+|.
T Consensus 317 L~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 317 LPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKA 349 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHHHHHhCCEEEEEecCCccEEEEEEeCC
Confidence 6899999999999999999999999998 4443
No 122
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=91.51 E-value=0.059 Score=47.48 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=28.8
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccC
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPV 32 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~ 32 (230)
|+|++++++.+||.++++|..|.|++|. .+|.
T Consensus 341 L~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 341 LPISRLYARYFQGDLKLYSMEGVGTDAVIYLKA 373 (419)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEecC
Confidence 6899999999999999999999999998 4444
No 123
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.43 E-value=2 Score=34.54 Aligned_cols=99 Identities=8% Similarity=-0.005 Sum_probs=65.6
Q ss_pred CcEEEEEec----cHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 64 GLSVLLVED----QAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 64 ~~~iLiVdd----~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
|..+++++- +|.....+.+.+++.|..+. .+.+.+++..+.. ..+|+|.
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--------------------------~Gad~Ig 154 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ--------------------------KGIEFIG 154 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------------------TTCSEEE
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh--------------------------CCCCEEE
Confidence 344555442 34444555666677777655 4567777766553 3467775
Q ss_pred EecC------CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 139 MDCQ------MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 139 ~D~~------mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
+... .+...++++++.+++ . ++|+|.-.+-.+.++...+++.|+++++.=
T Consensus 155 ~~~~g~t~~~~~~~~~~~li~~l~~------~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 155 TTLSGYTGPITPVEPDLAMVTQLSH------A--GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp CTTTTSSSSCCCSSCCHHHHHHHHT------T--TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCccCCCCCcCCCCCHHHHHHHHH------c--CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3221 123456788888874 1 689999999989999999999999998753
No 124
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=91.39 E-value=0.062 Score=47.09 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=28.7
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee-eccC
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK-PVPV 32 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~-~~p~ 32 (230)
|+|++.+++.|||.+++++..|.|++|+ .+|.
T Consensus 330 L~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 330 LPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKA 362 (407)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHHHHHhCCEEEEEEcCCCceEEEEEECC
Confidence 6899999999999999999999999998 4444
No 125
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=91.02 E-value=3.8 Score=38.74 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=80.1
Q ss_pred CCcEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 63 EGLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
++.+|++. |.+..-...+..+|+..||+|.... +.++.++... ...+|
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-------------------------e~~ad 649 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAV-------------------------EADVH 649 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHH-------------------------HTTCS
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH-------------------------HcCCC
Confidence 45578776 5566666788889999999997542 3466666655 56799
Q ss_pred EEEEecCCCC-CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 136 LILMDCQMGS-MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 136 lvl~D~~mp~-~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+|.+...|.. +. .-++++.|++. ...++ .|++-+.....+...+.+.|++.|+.--.+..++...+...+.
T Consensus 650 iVglSsl~~~~~~~~~~vi~~L~~~-----G~~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 650 VVGVSSLAGGHLTLVPALRKELDKL-----GRPDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHT-----TCTTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred EEEEeeecHhHHHHHHHHHHHHHhc-----CCCCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 9999887753 22 35567777752 11233 3444443344456678899999999876777777777766654
No 126
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=90.76 E-value=5.1 Score=38.06 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCcEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCcc
Q 026988 63 EGLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYD 135 (230)
Q Consensus 63 ~~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 135 (230)
++.+|++. |.+..-...+..+|+..||+|.... +.++.++... ...+|
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-------------------------e~~ad 657 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAV-------------------------DADVH 657 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-------------------------HTTCS
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHH-------------------------HcCCC
Confidence 45577776 4566666788889999999997542 3466666655 56799
Q ss_pred EEEEecCCCC-CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 136 LILMDCQMGS-MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 136 lvl~D~~mp~-~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
+|.+...|.. +. .-++++.|++. ...++ .|++-+.....+...+.+.|++.|+..--+..+....+...+.
T Consensus 658 iVglSsl~~~~~~~~~~vi~~Lr~~-----G~~dv-~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 658 AVGVSTLAAGHKTLVPELIKELNSL-----GRPDI-LVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHT-----TCTTS-EEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred EEEEeeecHHHHHHHHHHHHHHHhc-----CCCCC-EEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHH
Confidence 9999887753 22 35567777752 11233 3344442334456677899999999866677877777777664
No 127
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.40 E-value=3 Score=33.63 Aligned_cols=88 Identities=8% Similarity=-0.049 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC------CCCC
Q 026988 74 AVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ------MGSM 146 (230)
Q Consensus 74 ~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~------mp~~ 146 (230)
|.....+.+.+++.|..+. .+.+.+++..+.. ..+|+|.+... .+..
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--------------------------~Gad~Ig~~~~g~t~~~~~~~ 168 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR--------------------------LGADIIGTTMSGYTTPDTPEE 168 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH--------------------------TTCSEEECTTTTSSSSSCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh--------------------------CCCCEEEEcCccCCCCCCCCC
Confidence 4444555666677777654 4566666665543 34677753221 1223
Q ss_pred CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 147 DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 147 dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++++++++++ . ++|+|.-.+-.+.++...+++.|+++++.
T Consensus 169 ~~~~~i~~l~~------~--~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 169 PDLPLVKALHD------A--GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp CCHHHHHHHHH------T--TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHh------c--CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46788888874 2 68999999988999999999999999865
No 128
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=89.68 E-value=0.018 Score=51.97 Aligned_cols=28 Identities=4% Similarity=-0.067 Sum_probs=23.9
Q ss_pred CccchhhhhhcCCC-ceeEEccccee-eee
Q 026988 1 MSIGKEQAETTSHP-EKLELEHGLQL-EFK 28 (230)
Q Consensus 1 L~I~~~~~~~~g~~-~~~~~~~g~g~-~f~ 28 (230)
|+|++.+++.|||. ++++|..+.|+ .|.
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~ 142 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYT 142 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEE
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEE
Confidence 57889999999999 99999998875 554
No 129
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=89.09 E-value=3.6 Score=32.27 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=64.6
Q ss_pred CcEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 64 GLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 64 ~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
+.+||+. |-+..-...+..+|+..||+|.... ..++..+.+. ...||+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~-------------------------~~~~d~ 142 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK-------------------------KYQPDI 142 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH-------------------------HHCCSE
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCE
Confidence 3478877 6778888899999999999998654 3344555554 447999
Q ss_pred EEEecCCCC-CCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 137 ILMDCQMGS-MDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 137 vl~D~~mp~-~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
|.+...++. +.. .++++.+|+.. ..+++||++--...+.+. +...|+|.|-.-
T Consensus 143 v~lS~~~~~~~~~~~~~i~~l~~~~----~~~~~~v~vGG~~~~~~~---~~~~gad~~~~d 197 (210)
T 1y80_A 143 VGMSALLTTTMMNMKSTIDALIAAG----LRDRVKVIVGGAPLSQDF---ADEIGADGYAPD 197 (210)
T ss_dssp EEEECCSGGGTHHHHHHHHHHHHTT----CGGGCEEEEESTTCCHHH---HHHHTCSEECSS
T ss_pred EEEeccccccHHHHHHHHHHHHhcC----CCCCCeEEEECCCCCHHH---HHHcCCeEEECC
Confidence 999998764 332 44666776421 113466665544334322 356799866543
No 130
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=88.82 E-value=3.4 Score=34.18 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=49.2
Q ss_pred CccEEEEecCCCCCCH-----HHHHHHHHHhhhhhhcCCC-ceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHH
Q 026988 133 HYDLILMDCQMGSMDG-----CKATRVIRRLEAEAETGQS-IPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEH 201 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-----~~l~~~lr~~~~~~~~~~~-~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~ 201 (230)
.+++| +.+..|-.+| .++++.+++ ...+ +|||+=.+-..+++...+++.|+++.+. |.-++.
T Consensus 145 G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~------~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~ 217 (268)
T 2htm_A 145 GTATV-MPLAAPIGSGWGVRTRALLELFAR------EKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPP 217 (268)
T ss_dssp TCSCB-EEBSSSTTTCCCSTTHHHHHHHHH------TTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHH
T ss_pred CCCEE-EecCccCcCCcccCCHHHHHHHHH------hcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHH
Confidence 46666 6655542222 556777764 1345 8999988888999999999999999864 544566
Q ss_pred HHHHHHHHHH
Q 026988 202 LLAAAIVETI 211 (230)
Q Consensus 202 ~L~~~l~~~l 211 (230)
....++...+
T Consensus 218 ~ma~af~~Av 227 (268)
T 2htm_A 218 AMAEAFRLAV 227 (268)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 131
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=88.18 E-value=0.19 Score=38.13 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=26.2
Q ss_pred CccchhhhhhcCCCceeEEcccceeeee
Q 026988 1 MSIGKEQAETTSHPEKLELEHGLQLEFK 28 (230)
Q Consensus 1 L~I~~~~~~~~g~~~~~~~~~g~g~~f~ 28 (230)
|+|++++++.+||++++++..+.|++|.
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~~Gt~~~ 146 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEGKGTTIT 146 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEE
Confidence 5789999999999999999999999997
No 132
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=88.03 E-value=3.8 Score=32.58 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=65.4
Q ss_pred cEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 65 LSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 65 ~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
.+|++. |-+..-...+..+|+..||+|.... ..++.++.+. ...||+|
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~-------------------------~~~~d~v 147 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA-------------------------KHKGEKV 147 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH-------------------------HTTTSCE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH-------------------------HcCCCEE
Confidence 477776 6778888889999999999987653 4455556655 5679999
Q ss_pred EE--ecCCC-CCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 138 LM--DCQMG-SMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 138 l~--D~~mp-~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+ ...|. .+. --++++.+++... ..++||++=-+..+.+ -+...|+|.|-.-
T Consensus 148 ~l~~S~l~~~~~~~~~~~i~~l~~~~~----~~~v~v~vGG~~~~~~---~a~~iGad~~~~d 203 (215)
T 3ezx_A 148 LLVGSALMTTSMLGQKDLMDRLNEEKL----RDSVKCMFGGAPVSDK---WIEEIGADATAEN 203 (215)
T ss_dssp EEEEECSSHHHHTHHHHHHHHHHHTTC----GGGSEEEEESSSCCHH---HHHHHTCCBCCSS
T ss_pred EEEchhcccCcHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCHH---HHHHhCCeEEECC
Confidence 99 88875 333 3446677775211 1256765544434433 3456799877543
No 133
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=86.56 E-value=5.2 Score=32.47 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=51.1
Q ss_pred CCccEEEEecCCCC-------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCC
Q 026988 132 PHYDLILMDCQMGS-------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQ 199 (230)
Q Consensus 132 ~~~dlvl~D~~mp~-------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~ 199 (230)
..+|.|.+.-..|. .-|++.++++++. ....+||+.+.+- +.++.....+.|++++.. +.-+
T Consensus 154 ~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~-----~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~d 227 (243)
T 3o63_A 154 GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAEL-----GGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSADD 227 (243)
T ss_dssp SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC--------CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCSS
T ss_pred CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHh-----ccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 35788888654332 2367778877641 1136899999887 778899999999998854 5556
Q ss_pred HHHHHHHHHHHHH
Q 026988 200 EHLLAAAIVETIA 212 (230)
Q Consensus 200 ~~~L~~~l~~~l~ 212 (230)
+.+....+...+.
T Consensus 228 p~~a~~~l~~~~~ 240 (243)
T 3o63_A 228 PRAAAEQLRSALT 240 (243)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 134
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=86.29 E-value=8.8 Score=28.78 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=66.6
Q ss_pred CcEEEEEeccH-HHHHHHHHHHHhcCCeEEE-EcCc--HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 64 GLSVLLVEDQA-VLQRIGIRMLKKLGAGVTL-VKDG--EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 64 ~~~iLiVdd~~-~~~~~l~~~L~~~g~~v~~-~~~~--~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
..+++++++.+ .....+.+.++..+ .+.. .... ++....+. ..|++++
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~---------------------------~ad~~l~ 121 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG---------------------------SVDFVII 121 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT---------------------------TCSEEEE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH---------------------------HCCEEEE
Confidence 45677776544 23456666666665 5554 3322 24444332 4678887
Q ss_pred ecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH-hccCc
Q 026988 140 DCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA-RKSHK 217 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~-~~~~~ 217 (230)
-... +.-|..+++-+. ..+|||+... . ...... .|-.+++..|-+.+++..+|..++. .....
T Consensus 122 ps~~-e~~~~~~~Ea~a---------~G~PvI~~~~---~-~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~ 185 (200)
T 2bfw_A 122 PSYF-EPFGLVALEAMC---------LGAIPIASAV---G-GLRDII-TNETGILVKAGDPGELANAILKALELSRSDL 185 (200)
T ss_dssp CCSC-CSSCHHHHHHHH---------TTCEEEEESC---H-HHHHHC-CTTTCEEECTTCHHHHHHHHHHHHHCCHHHH
T ss_pred CCCC-CCccHHHHHHHH---------CCCCEEEeCC---C-ChHHHc-CCCceEEecCCCHHHHHHHHHHHHhcCHHHH
Confidence 5433 333555666554 3477765422 2 223333 6788899999999999999999987 54433
No 135
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.99 E-value=9.7 Score=32.53 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=74.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL---GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~---g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
..++++.|+|.|+.-.+.|.+++.+. .+.+..+++.+.+.+.++ ...+|++|
T Consensus 19 ~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~-------------------------~~~~dill 73 (373)
T 3fkq_A 19 GMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVK-------------------------EYRIDVLI 73 (373)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHH-------------------------HHTCSEEE
T ss_pred CceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHh-------------------------cCCCCEEE
Confidence 44678999999999999999999654 468999999999988876 45799999
Q ss_pred EecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 139 MDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
+|-.+..... . .....++++++.....+. ..-...+.|--+.+++...+...+
T Consensus 74 i~e~~~~~~~-----~---------~~~~~~v~~l~~~~~~~~------~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 74 AEEDFNIDKS-----E---------FKRNCGLAYFTGTPGIEL------IKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EETTCCCCGG-----G---------GCSSCEEEEEESCTTCCE------ETTEEEEETTSCHHHHHHHHHHHH
T ss_pred Ecchhhhhhh-----h---------hcccCcEEEEECCCCCCc------CCCCceeeccCCHHHHHHHHHHHH
Confidence 9988764211 0 123356777766432211 111236888888888887776665
No 136
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=85.58 E-value=11 Score=35.24 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=76.9
Q ss_pred CCcEEEEE----eccHHHHHHH----HHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCC
Q 026988 63 EGLSVLLV----EDQAVLQRIG----IRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131 (230)
Q Consensus 63 ~~~~iLiV----dd~~~~~~~l----~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (230)
.+.+|++. |-+..-...+ ..+|+..||+|.-.. ..++.++... .
T Consensus 601 ~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~-------------------------E 655 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAI-------------------------E 655 (763)
T ss_dssp SCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHH-------------------------H
T ss_pred cCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-------------------------H
Confidence 35588877 4444444333 467899999987553 5566666665 5
Q ss_pred CCccEEEEecCCCC----CCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHH
Q 026988 132 PHYDLILMDCQMGS----MDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206 (230)
Q Consensus 132 ~~~dlvl~D~~mp~----~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~ 206 (230)
..+|+|.+...|.. +.. -++++.+++.. ....++|++ -+..-... -+.+.|++.|..-.....++...
T Consensus 656 edADVVGLSsLLTt~dihL~~MkevIelLrE~G----lrDkIkVIV-GGa~~tqd--~AkeIGADa~f~DATeAVeVA~~ 728 (763)
T 3kp1_A 656 LKADAILASTIISHDDIHYKNMKRIHELAVEKG----IRDKIMIGC-GGTQVTPE--VAVKQGVDAGFGRGSKGIHVATF 728 (763)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTT----CTTTSEEEE-ECTTCCHH--HHHTTTCSEEECTTCCHHHHHHH
T ss_pred cCCCEEEEeccccCchhhHHHHHHHHHHHHhcC----CCCCCEEEE-ECCCCCHH--HHHHcCCcEEECCcchHHHHHHH
Confidence 68999999998876 333 33666666521 111355544 44333322 34689999998887888888877
Q ss_pred HHHHHHhccCc
Q 026988 207 IVETIARKSHK 217 (230)
Q Consensus 207 l~~~l~~~~~~ 217 (230)
|...+..+...
T Consensus 729 Ll~~l~er~~~ 739 (763)
T 3kp1_A 729 LVKKRREMREG 739 (763)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhc
Confidence 77666554333
No 137
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=85.51 E-value=14 Score=30.36 Aligned_cols=117 Identities=11% Similarity=0.063 Sum_probs=74.4
Q ss_pred CcEEEEE----eccHHHHHHHHHH--------HHhc-CCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCccc
Q 026988 64 GLSVLLV----EDQAVLQRIGIRM--------LKKL-GAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLE 127 (230)
Q Consensus 64 ~~~iLiV----dd~~~~~~~l~~~--------L~~~-g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (230)
+.+|++. |-+..-...+..+ |+.. ||+|.-.. ..++.++...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~---------------------- 177 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAV---------------------- 177 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHH----------------------
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHH----------------------
Confidence 4466654 6666777777777 8899 99987543 4455555554
Q ss_pred ccCCCCccEEEEecCCCCCC----H-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHH
Q 026988 128 THNSPHYDLILMDCQMGSMD----G-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHL 202 (230)
Q Consensus 128 ~~~~~~~dlvl~D~~mp~~d----g-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~ 202 (230)
...+|+|.+...|...+ . -++++.+++.. ...+++| ++-+... ....+.+.|++.|..--....+
T Consensus 178 ---e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g----~~~~i~v-ivGG~~~--~~~~a~~iGad~~~~da~~~~~ 247 (262)
T 1xrs_B 178 ---ELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEG----LRDRFVL-LCGGPRI--NNEIAKELGYDAGFGPGRFADD 247 (262)
T ss_dssp ---HTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTT----CGGGSEE-EEECTTC--CHHHHHTTTCSEEECTTCCHHH
T ss_pred ---HcCCCEEEEEeecCCccchHHHHHHHHHHHHhcC----CCCCCEE-EEECCcC--CHHHHHHcCCeEEECCchHHHH
Confidence 56899999999987522 2 23555665411 1122555 4444432 2344778999988877777777
Q ss_pred HHHHHHHHHH
Q 026988 203 LAAAIVETIA 212 (230)
Q Consensus 203 L~~~l~~~l~ 212 (230)
+...+...+.
T Consensus 248 ~a~~l~~~~~ 257 (262)
T 1xrs_B 248 VATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665544
No 138
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=85.37 E-value=5.2 Score=33.63 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=45.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-..-.+.-|..+++-+- ..+|||+... ....+....|..+++..|-+.+++.++|..++..
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a---------~G~PvI~~~~----~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMA---------AGTAVVASDL----DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHH---------HTCEEEECCC----HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred CCEEEecCCCCCCCchHHHHHHH---------cCCCEEEecC----CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 56777653213334555666554 2367765422 3445566778889999999999999999998875
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 350 ~ 350 (406)
T 2gek_A 350 D 350 (406)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=84.66 E-value=12 Score=28.91 Aligned_cols=73 Identities=10% Similarity=0.097 Sum_probs=46.0
Q ss_pred CccEEEEecCCC----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCCHHHH
Q 026988 133 HYDLILMDCQMG----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQEHLL 203 (230)
Q Consensus 133 ~~dlvl~D~~mp----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~~~L 203 (230)
..|.|.++.... ..++++.++++++. ..++||++-.+- +.+....+.+.|++.++ .+.-++.+-
T Consensus 127 g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~------~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~ 199 (211)
T 3f4w_A 127 GADMLAVHTGTDQQAAGRKPIDDLITMLKV------RRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGE 199 (211)
T ss_dssp TCCEEEEECCHHHHHTTCCSHHHHHHHHHH------CSSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHH
T ss_pred CCCEEEEcCCCcccccCCCCHHHHHHHHHH------cCCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 367776662211 11356777777752 235788776665 48888899999999774 455566665
Q ss_pred HHHHHHHHH
Q 026988 204 AAAIVETIA 212 (230)
Q Consensus 204 ~~~l~~~l~ 212 (230)
.+.+...+.
T Consensus 200 ~~~l~~~~~ 208 (211)
T 3f4w_A 200 ARKISQVLL 208 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555655544
No 140
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=83.09 E-value=9.8 Score=33.26 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=69.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCC--cccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS--NLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlvl~D~ 141 (230)
+.+|+|++-...- ..+.+.|...|+.|.+++.-.+.++.++.. ...+..++... -|....-...++|++-+
T Consensus 4 ~~~viIiG~Gr~G-~~va~~L~~~g~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 4 GMRVIIAGFGRFG-QITGRLLLSSGVKMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp CCSEEEECCSHHH-HHHHHHHHHTTCCEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCeEEEECCCHHH-HHHHHHHHHCCCCEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 3478888876655 555666777788888777766666655421 11111112111 13333345688888865
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.-+ ..-..++..+|+ .+++++||+-+. +.........+|++..+.-
T Consensus 77 ~~~-~~n~~i~~~ar~------~~p~~~Iiara~--~~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 77 DDP-QTNLQLTEMVKE------HFPHLQIIARAR--DVDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp SSH-HHHHHHHHHHHH------HCTTCEEEEEES--SHHHHHHHHHTTCSSCEET
T ss_pred CCh-HHHHHHHHHHHH------hCCCCeEEEEEC--CHHHHHHHHHCCCCEEECc
Confidence 421 223445666665 345577887765 4667778889999977653
No 141
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=83.06 E-value=0.92 Score=37.45 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=27.4
Q ss_pred cEEEEEecc--HHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 65 LSVLLVEDQ--AVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 65 ~~iLiVdd~--~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
.+||||+++ +.....+.+.|++.||.|......
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~ 39 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSH 39 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTT
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccc
Confidence 489999988 667789999999999999877643
No 142
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=82.89 E-value=7.5 Score=31.72 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=48.8
Q ss_pred CCccEEEEecCCCC--CCH--------------------HHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHH
Q 026988 132 PHYDLILMDCQMGS--MDG--------------------CKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNER 183 (230)
Q Consensus 132 ~~~dlvl~D~~mp~--~dg--------------------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~ 183 (230)
...|+|-+++-..+ .|| +++++.+|+ ..+++|+++++.++. .....
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~------~~~~~Pi~~m~y~n~v~~~g~~~f~~ 116 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRK------EFPDIPFLLMTYYNPIFRIGLEKFCR 116 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------HCTTSCEEEECCHHHHHHHCHHHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh------hcCCCCEEEEecCcHHHHhhHHHHHH
Confidence 45899999876543 343 344555553 223689999865432 35567
Q ss_pred HHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 184 ECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 184 ~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.+.++|+++++.-.+..+++...+..+-
T Consensus 117 ~~~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 117 LSREKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 7889999999997788777666555443
No 143
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=82.81 E-value=11 Score=31.16 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=65.0
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec-
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC- 141 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~- 141 (230)
..+.|-+.-.++.....+.++|...-|.+..+.+.++.++.+... ...+|++++..
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~-----------------------~e~iDcLvle~~ 64 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTH-----------------------RDQIDCLILVAA 64 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHS-----------------------TTSCSEEEEETT
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhc-----------------------cccCCEEEEEeC
Confidence 356788888888999999999988889999999999988888743 67899999986
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
.. +-..+...+.+ .+.-+|+|++...
T Consensus 65 ~~---~~~~~~~~L~~------~g~lLP~vil~~~ 90 (289)
T 1r8j_A 65 NP---SFRAVVQQLCF------EGVVVPAIVVGDR 90 (289)
T ss_dssp ST---THHHHHHHHHH------TTCCCCEEEESCC
T ss_pred CC---ccHHHHHHHHH------cCccccEEEeccC
Confidence 42 35566777774 5667899998664
No 144
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=81.64 E-value=13 Score=29.11 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=46.1
Q ss_pred CccEEEEecCCCC-------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCH
Q 026988 133 HYDLILMDCQMGS-------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQE 200 (230)
Q Consensus 133 ~~dlvl~D~~mp~-------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~ 200 (230)
..|.|+++-..+. ..+++.++.+++. ..+||++..+- +.++...+++.|++.+.. +.-++
T Consensus 130 gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~-------~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~~d~ 201 (221)
T 1yad_A 130 DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR-------ISIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSSAEP 201 (221)
T ss_dssp TCSEEEEECCC----------CHHHHHHHHHHH-------CCSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTSSSH
T ss_pred CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCCCCH
Confidence 4788888764332 1357777777641 25898888777 888999999999997643 33344
Q ss_pred HHHHHHHHHHHH
Q 026988 201 HLLAAAIVETIA 212 (230)
Q Consensus 201 ~~L~~~l~~~l~ 212 (230)
.+..+.+.+.+.
T Consensus 202 ~~~~~~~~~~~~ 213 (221)
T 1yad_A 202 LEAARRYSRKLK 213 (221)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 145
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=81.39 E-value=4.7 Score=34.40 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=32.0
Q ss_pred CCceEEEEecCCC-hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccCcccchhh
Q 026988 166 QSIPIIAFTALVT-ADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSHKFSCDEQ 223 (230)
Q Consensus 166 ~~~pii~ls~~~~-~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~~~~~~~~ 223 (230)
..+|||.-+.... .+........ +++..+-+.++|.++|.+++.. ..+......
T Consensus 301 ~G~PVI~~~~~~~~~e~~~~~~~~---G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ 355 (374)
T 2xci_A 301 WGIPVIYGPYTHKVNDLKEFLEKE---GAGFEVKNETELVTKLTELLSV-KKEIKVEEK 355 (374)
T ss_dssp TTCCEEECSCCTTSHHHHHHHHHT---TCEEECCSHHHHHHHHHHHHHS-CCCCCHHHH
T ss_pred hCCCEEECCCccChHHHHHHHHHC---CCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 4578885222222 2223222233 4566677899999999999987 555444333
No 146
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=81.04 E-value=24 Score=29.68 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=45.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|++++-... +.-|..+++-+- ..+|||.... . ...+....| .+++..|.+.+++.++|..++.
T Consensus 330 ~adv~v~ps~~-e~~~~~~~EAma---------~G~Pvi~s~~-~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 330 SVDFVIIPSYF-EPFGLVALEAMC---------LGAIPIASAV-G---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp TCSEEEECBSC-CSSCHHHHHHHH---------TTCEEEEESS-T---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred HCCEEEeCCCC-CCccHHHHHHHH---------CCCCeEEcCC-C---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 46777765443 344555665553 3478776422 1 233344456 8999999999999999999998
Q ss_pred -hccCc
Q 026988 213 -RKSHK 217 (230)
Q Consensus 213 -~~~~~ 217 (230)
.....
T Consensus 395 ~~~~~~ 400 (439)
T 3fro_A 395 LSRSDL 400 (439)
T ss_dssp HTTTTT
T ss_pred cCHHHH
Confidence 44333
No 147
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=79.96 E-value=14 Score=26.47 Aligned_cols=115 Identities=12% Similarity=0.051 Sum_probs=64.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCC--cccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS--NLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlvl~D~~ 142 (230)
.+|+|++-...- ..+.+.|.+.|+.|..++.-.+.++.+... .......+... -+....-...|+|++-..
T Consensus 8 ~~viIiG~G~~G-~~la~~L~~~g~~v~vid~~~~~~~~~~~~------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVG-SLLGEKLLASDIPLVVIETSRTRVDELRER------GVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHH-HHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHH-HHHHHHHHHCCCCEEEEECCHHHHHHHHHc------CCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 378888877655 455566666788888777766666655421 11111111111 122222346788887543
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
-.. .-..++..+|++ .+.++||+... +........+.|++..+.
T Consensus 81 ~~~-~n~~~~~~a~~~------~~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 81 NGY-EAGEIVASARAK------NPDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp CHH-HHHHHHHHHHHH------CSSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred ChH-HHHHHHHHHHHH------CCCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 221 123345556642 34567776664 456677778899996664
No 148
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.94 E-value=7.5 Score=26.83 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHh
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~ 110 (230)
-.|+-|.++.-.+...+-+++.||.|.-+.+.++|+..+++..+-
T Consensus 79 flllqdqdeneleefkrkiesqgyevrkvtddeealkivrefmqk 123 (134)
T 2lci_A 79 FLLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREFMQK 123 (134)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHHHHH
T ss_pred EEEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHHHHh
Confidence 345667777777888888999999999999999999988765443
No 149
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=78.73 E-value=26 Score=28.76 Aligned_cols=102 Identities=15% Similarity=0.031 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC--CCHHHHH
Q 026988 76 LQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS--MDGCKAT 152 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~--~dg~~l~ 152 (230)
....+.+..+.+|..+. .+++.+++...+. ..+|+|-+.-.-.. ..+++.+
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~--------------------------~Gad~IGv~~r~l~~~~~dl~~~ 203 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALK--------------------------AGAKVIGVNARDLMTLDVDRDCF 203 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------------------------HTCSEEEEESBCTTTCCBCTTHH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH--------------------------CCCCEEEECCCcccccccCHHHH
Confidence 34555666677888654 4567766655543 13566665421110 1124455
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHH
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIV 208 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~ 208 (230)
..+... ....+|+|..++-.+.++.....+.|+++++. +.-++.+....+.
T Consensus 204 ~~l~~~-----v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~ 259 (272)
T 3qja_A 204 ARIAPG-----LPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLV 259 (272)
T ss_dssp HHHGGG-----SCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHH
T ss_pred HHHHHh-----CcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHH
Confidence 556531 11268999999988899999999999999976 3335554444433
No 150
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=77.12 E-value=13 Score=30.71 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=44.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC-CCCHHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK-PAQEHLLAAAIVETIA 212 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K-P~~~~~L~~~l~~~l~ 212 (230)
.|++++-.. .+.-|..+++-+- ..+|+|+.......+ ....|..+++.. |.+.+++.++|..++.
T Consensus 271 ad~~v~ps~-~e~~~~~~~Ea~a---------~G~Pvi~~~~~~~~e----~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 271 ADLLLHPAY-QEAAGIVLLEAIT---------AGLPVLTTAVCGYAH----YIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHH---------HTCCEEEETTSTTTH----HHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred cCEEEeccc-cCCcccHHHHHHH---------CCCCEEEecCCCchh----hhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 567776433 2344566666554 247888765433333 334456788887 8999999999999987
Q ss_pred hcc
Q 026988 213 RKS 215 (230)
Q Consensus 213 ~~~ 215 (230)
...
T Consensus 337 ~~~ 339 (374)
T 2iw1_A 337 QSP 339 (374)
T ss_dssp CHH
T ss_pred ChH
Confidence 543
No 151
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=76.78 E-value=9.6 Score=31.71 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=43.0
Q ss_pred ccEEEEecCC------CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 134 YDLILMDCQM------GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 134 ~dlvl~D~~m------p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
.|++++-... ++.-|..+++-+- ..+|||+... ... ......| ++++..|-+.++|.++|
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a---------~G~PvI~~~~-~~~---~e~i~~~-~g~~~~~~d~~~l~~~i 338 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQA---------CGVPVIAGTS-GGA---PETVTPA-TGLVVEGSDVDKLSELL 338 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHH---------TTCCEEECSS-TTG---GGGCCTT-TEEECCTTCHHHHHHHH
T ss_pred CCEEEecCccccccccccccCcHHHHHHH---------cCCCEEEeCC-CCh---HHHHhcC-CceEeCCCCHHHHHHHH
Confidence 5677764443 1344555665554 3478876432 222 2234556 89999999999999999
Q ss_pred HHHHHhc
Q 026988 208 VETIARK 214 (230)
Q Consensus 208 ~~~l~~~ 214 (230)
..++...
T Consensus 339 ~~l~~~~ 345 (394)
T 3okp_A 339 IELLDDP 345 (394)
T ss_dssp HHHHTCH
T ss_pred HHHHhCH
Confidence 9988744
No 152
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=76.26 E-value=14 Score=28.98 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCcEEEEEe------ccHHHHHHHHHHHHhcCCeEEEE----cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCC
Q 026988 63 EGLSVLLVE------DQAVLQRIGIRMLKKLGAGVTLV----KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132 (230)
Q Consensus 63 ~~~~iLiVd------d~~~~~~~l~~~L~~~g~~v~~~----~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (230)
.+.+|++|+ |.......+.+.|+..|+.+... .+.++..+.+.
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--------------------------- 78 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR--------------------------- 78 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH---------------------------
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH---------------------------
Confidence 356999996 33457788999999999998887 36666666665
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhh----cCCCceEEEEe
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAE----TGQSIPIIAFT 174 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~----~~~~~pii~ls 174 (230)
..|.|++ |+.+-+.+++.+++..-... .....|++=+|
T Consensus 79 ~ad~I~l----~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 79 KNDFIYV----TGGNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp HSSEEEE----CCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred hCCEEEE----CCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 2678886 77777777776664322111 11246776654
No 153
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=75.78 E-value=19 Score=25.59 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=62.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCC--cccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS--NLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlvl~D~~ 142 (230)
.+|+|++-... -..+.+.|.+.|++|..++.-.+.++.+... .......+... .+....-..+|+|++-..
T Consensus 7 ~~v~I~G~G~i-G~~la~~L~~~g~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAA-GVGLVRELTAAGKKVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 47888887664 4566667777788888887766665555421 11111111111 122222346888887544
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+..-..++..+|+ .+ ...|++.+. +........+.|++..+.
T Consensus 80 -~~~~n~~~~~~a~~------~~-~~~iia~~~--~~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 80 -DDEFNLKILKALRS------VS-DVYAIVRVS--SPKKKEEFEEAGANLVVL 122 (141)
T ss_dssp -CHHHHHHHHHHHHH------HC-CCCEEEEES--CGGGHHHHHHTTCSEEEE
T ss_pred -CHHHHHHHHHHHHH------hC-CceEEEEEc--ChhHHHHHHHcCCCEEEC
Confidence 11112334555554 23 455666554 345566778899885544
No 154
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=75.43 E-value=27 Score=29.61 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=44.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-.. .+.-|..+++-+- ..+|||+... . ........|.++++..|.+.++|.++|..++..
T Consensus 326 adv~v~ps~-~e~~~~~~~Eama---------~G~PvI~~~~-~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 326 ADIVAVPSF-NESFGLVAMEAQA---------SGTPVIAARV-G---GLPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHH---------TTCCEEEESC-T---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCEEEECcc-ccCCchHHHHHHH---------cCCCEEecCC-C---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 567665432 2333555555553 3478776532 2 233445567789999999999999999998875
Q ss_pred cc
Q 026988 214 KS 215 (230)
Q Consensus 214 ~~ 215 (230)
..
T Consensus 392 ~~ 393 (438)
T 3c48_A 392 DE 393 (438)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 155
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.04 E-value=16 Score=27.56 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=9.8
Q ss_pred CCcEEEEEeccHH
Q 026988 63 EGLSVLLVEDQAV 75 (230)
Q Consensus 63 ~~~~iLiVdd~~~ 75 (230)
.+.+|++||-|+.
T Consensus 29 ~g~~vlliD~D~~ 41 (206)
T 4dzz_A 29 SGYNIAVVDTDPQ 41 (206)
T ss_dssp TTCCEEEEECCTT
T ss_pred CCCeEEEEECCCC
Confidence 4678999997754
No 156
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=74.98 E-value=10 Score=30.23 Aligned_cols=63 Identities=22% Similarity=0.145 Sum_probs=41.8
Q ss_pred ccEEEEecC--CCCCCH--------------------HHHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHHHH
Q 026988 134 YDLILMDCQ--MGSMDG--------------------CKATRVIRRLEAEAETGQSIPIIAFTALVT------ADNEREC 185 (230)
Q Consensus 134 ~dlvl~D~~--mp~~dg--------------------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~~~ 185 (230)
.|.|-+++- -|.+|| +++++.+|+ ..++||++++.... .+....+
T Consensus 32 ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~-------~~~~pv~~~~~~~~~~~~~~~~~~~~~ 104 (248)
T 1geq_A 32 AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRR-------HSSTPIVLMTYYNPIYRAGVRNFLAEA 104 (248)
T ss_dssp BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHT-------TCCCCEEEEECHHHHHHHCHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-------hCCCCEEEEeccchhhhcCHHHHHHHH
Confidence 788888843 345655 556666663 23578888875333 4678888
Q ss_pred HHcCCCeeEeCCCCHHHH
Q 026988 186 FNSGMDTFLNKPAQEHLL 203 (230)
Q Consensus 186 ~~~G~~~~L~KP~~~~~L 203 (230)
.++|++.++.-.....+.
T Consensus 105 ~~~Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 105 KASGVDGILVVDLPVFHA 122 (248)
T ss_dssp HHHTCCEEEETTCCGGGH
T ss_pred HHCCCCEEEECCCChhhH
Confidence 999999888865544443
No 157
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=74.43 E-value=22 Score=26.26 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=44.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-.. .+.-|..+++-+. ..+|||+... .........|.++++. +.+.+++.++|..++..
T Consensus 98 adi~v~ps~-~e~~~~~~~Eama---------~G~PvI~~~~----~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 98 CKGLLCTAK-DEDFGLTPIEAMA---------SGKPVIAVNE----GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CSEEEECCS-SCCSCHHHHHHHH---------TTCCEEEESS----HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CCEEEeCCC-cCCCChHHHHHHH---------cCCcEEEeCC----CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 577776322 3334555665554 3478876532 2334445567788999 99999999999999976
Q ss_pred cc
Q 026988 214 KS 215 (230)
Q Consensus 214 ~~ 215 (230)
..
T Consensus 163 ~~ 164 (177)
T 2f9f_A 163 PD 164 (177)
T ss_dssp TT
T ss_pred HH
Confidence 55
No 158
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=74.38 E-value=20 Score=27.77 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCC
Q 026988 132 PHYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQ 199 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~ 199 (230)
...|.|+++...|+.+| ++-++.+|+.... ...++||++.-+ -+.+...++.++|++.+. .+..+
T Consensus 130 ~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~i~v~GG-I~~~~~~~~~~~Gad~vvvGsai~~~~d 206 (220)
T 2fli_A 130 DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE--KGLSFDIEVDGG-VDNKTIRACYEAGANVFVAGSYLFKASD 206 (220)
T ss_dssp TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHH--TTCCCEEEEESS-CCTTTHHHHHHHTCCEEEESHHHHTSSC
T ss_pred hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHh--cCCCceEEEECc-CCHHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 34788988877665554 2445555543221 122567665544 457778888899999774 34445
Q ss_pred HHHHHHHHHH
Q 026988 200 EHLLAAAIVE 209 (230)
Q Consensus 200 ~~~L~~~l~~ 209 (230)
+.+-.+.+++
T Consensus 207 ~~~a~~~~~~ 216 (220)
T 2fli_A 207 LVSQVQTLRT 216 (220)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 159
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=74.36 E-value=12 Score=30.48 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=47.9
Q ss_pred CCccEEEEecCCC--CCCHH--------------------HHHHHHHHhhhhhhcCCCceEEEEecCCC------hHhHH
Q 026988 132 PHYDLILMDCQMG--SMDGC--------------------KATRVIRRLEAEAETGQSIPIIAFTALVT------ADNER 183 (230)
Q Consensus 132 ~~~dlvl~D~~mp--~~dg~--------------------~l~~~lr~~~~~~~~~~~~pii~ls~~~~------~~~~~ 183 (230)
...|+|-+++-.. -+||. ++++.+|+ ...++||++++.... .....
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~------~~~~~Pv~lm~y~n~v~~~g~~~~~~ 116 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIRE------KHPTIPIGLLMYANLVFNNGIDAFYA 116 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------HCSSSCEEEEECHHHHHTTCHHHHHH
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh------cCCCCCEEEEEcccHHHHhhHHHHHH
Confidence 4589999998553 34553 44555553 224589988863322 46677
Q ss_pred HHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 184 ECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 184 ~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
.+.++|+++++.-....+++...+..+
T Consensus 117 ~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 117 RCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 889999999998777776655554443
No 160
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=73.52 E-value=17 Score=26.19 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=65.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC--cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD--GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+++++++.+. ...+.+++...+..+.. .. .++..+.+. ..|++++-.
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~---------------------------~adv~v~ps 82 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILK---------------------------TCTLYVHAA 82 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHT---------------------------TCSEEEECC
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHH---------------------------hCCEEEECC
Confidence 468889987664 36778888888776555 33 233333332 467877744
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCc-eEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhccC
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSI-PIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~-pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
. .+.-|..+++-+- ..+ |||..+........ ...+ .++..|-+.+++..+|..++.....
T Consensus 83 ~-~e~~~~~~~Eama---------~G~vPvi~~~~~~~~~~~---~~~~--~~~~~~~~~~~l~~~i~~l~~~~~~ 143 (166)
T 3qhp_A 83 N-VESEAIACLEAIS---------VGIVPVIANSPLSATRQF---ALDE--RSLFEPNNAKDLSAKIDWWLENKLE 143 (166)
T ss_dssp C-SCCCCHHHHHHHH---------TTCCEEEECCTTCGGGGG---CSSG--GGEECTTCHHHHHHHHHHHHHCHHH
T ss_pred c-ccCccHHHHHHHh---------cCCCcEEeeCCCCchhhh---ccCC--ceEEcCCCHHHHHHHHHHHHhCHHH
Confidence 3 3444666666554 345 88873322222111 1112 3478889999999999999875443
No 161
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.24 E-value=18 Score=31.78 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=16.1
Q ss_pred CcEEEEEeccH---HHHHHHHHHHHhcCCeEEEE
Q 026988 64 GLSVLLVEDQA---VLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 64 ~~~iLiVdd~~---~~~~~l~~~L~~~g~~v~~~ 94 (230)
+.+|++||-|+ .....+...-...|..+...
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~ 162 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPS 162 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeC
Confidence 66788887764 22233333334445555444
No 162
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=73.15 E-value=10 Score=30.35 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=45.6
Q ss_pred CccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCCH
Q 026988 133 HYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQE 200 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~ 200 (230)
..|.|++..-.|+..| ++-++++|++ ..+.+ |.+.+.-+.+....+.++|+|.++ .+.-++
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~------~~~~~-I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp 206 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ------FPSLD-IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDP 206 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH------CTTCE-EEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCH
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh------cCCCC-EEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 4788888766777665 3334455532 23344 455565678899999999999764 444456
Q ss_pred HHHHHHHHHHHH
Q 026988 201 HLLAAAIVETIA 212 (230)
Q Consensus 201 ~~L~~~l~~~l~ 212 (230)
.+-.+.++..+.
T Consensus 207 ~~~~~~l~~~~~ 218 (228)
T 3ovp_A 207 RSVINLLRNVCS 218 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 163
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=73.01 E-value=20 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=34.7
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHH
Q 026988 67 VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107 (230)
Q Consensus 67 iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~ 107 (230)
|++...++...+....+++..||.+.++.+..+.-+.+.+.
T Consensus 5 ivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieel 45 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEEL 45 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHH
Confidence 44556777778899999999999999999999988888765
No 164
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.54 E-value=19 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=21.1
Q ss_pred CCcEEEEEecc---HHHHHHHHHHHHhcCCeEEEE
Q 026988 63 EGLSVLLVEDQ---AVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 63 ~~~~iLiVdd~---~~~~~~l~~~L~~~g~~v~~~ 94 (230)
.+.+|+++|-| +.....+..+.+..|+.+...
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 46689999987 344455555566667776654
No 165
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=71.96 E-value=23 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=46.0
Q ss_pred CccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCH
Q 026988 133 HYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQE 200 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~ 200 (230)
..|.|+++...|+.+| ++.++++|+. ..++||++.-+- +.+....+.++|+|.++. +.-++
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~------~~~~pi~v~GGI-~~~ni~~~~~aGaD~vvvGsai~~~~d~ 210 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKK------YPSLDIEVDGGL-GPSTIDVAASAGANCIVAGSSIFGAAEP 210 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH------CTTSEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHh------cCCCCEEEECCc-CHHHHHHHHHcCCCEEEECHHHHCCCCH
Confidence 5789999887775333 4555555542 125787766554 457888888899997743 43355
Q ss_pred HHHHHHHHHHHH
Q 026988 201 HLLAAAIVETIA 212 (230)
Q Consensus 201 ~~L~~~l~~~l~ 212 (230)
.+-.+.+++.+.
T Consensus 211 ~~~~~~l~~~~~ 222 (228)
T 1h1y_A 211 GEVISALRKSVE 222 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 166
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=71.92 E-value=38 Score=27.46 Aligned_cols=75 Identities=8% Similarity=0.212 Sum_probs=50.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
...+|.|++|+.-.-.+.-++...++.... ...++++=....+..++..++..|++.. ++|--+.+++...+..
T Consensus 35 ~~g~D~vilDlEhav~~~~k~~~~l~a~~~-----~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 35 EAGLDYFIVDCEHAAYTFREINHLVSVAKN-----AGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp HTTCSEEEEESSSSCCCHHHHHHHHHHHHH-----HTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHH
T ss_pred cCCcCEEEEeccCCCCCHHHHHHHHHHHhh-----cCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHH
Confidence 456999999999877777666666665322 1234444444456678999999999976 4555567777766554
Q ss_pred H
Q 026988 210 T 210 (230)
Q Consensus 210 ~ 210 (230)
+
T Consensus 110 ~ 110 (261)
T 3qz6_A 110 A 110 (261)
T ss_dssp H
T ss_pred h
Confidence 4
No 167
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=71.05 E-value=12 Score=30.02 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCeEEEEc--CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC----C-CCHHH
Q 026988 78 RIGIRMLKKLGAGVTLVK--DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG----S-MDGCK 150 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~--~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp----~-~dg~~ 150 (230)
....+.|++.|+.+..=+ ++...+..+. .-+||.|=+|..+- . .....
T Consensus 142 ~~~l~~l~~~G~~ialDdfG~g~ssl~~L~-------------------------~l~~d~iKiD~~~v~~~~~~~~~~~ 196 (259)
T 3s83_A 142 AVILKTLRDAGAGLALDDFGTGFSSLSYLT-------------------------RLPFDTLKIDRYFVRTMGNNAGSAK 196 (259)
T ss_dssp HHHHHHHHHHTCEEEEECC---CHHHHHHH-------------------------HSCCCEEEECHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHH-------------------------hCCCCEEEECHHHHhhhhcCchHHH
Confidence 445567788898876543 4555666665 55799999996432 1 12233
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe----eEeCCCCHHHHHHHHHH
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT----FLNKPAQEHLLAAAIVE 209 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~----~L~KP~~~~~L~~~l~~ 209 (230)
+++.+..+-. ...+ -++..+-.+.+....+.+.|++. |+.||.+.+++...++.
T Consensus 197 ~~~~i~~~a~----~~g~-~viaeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 197 IVRSVVKLGQ----DLDL-EVVAEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHH----HTTC-EEEECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHH----HCCC-eEEEEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 4554443211 1223 45566777888888889999983 37899999998877654
No 168
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=70.85 E-value=16 Score=30.61 Aligned_cols=135 Identities=12% Similarity=0.137 Sum_probs=71.9
Q ss_pred CcEEEEEec------cHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 64 GLSVLLVED------QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 64 ~~~iLiVdd------~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
...|+.+.. -..+.+.+..+.....+.+..+.++... +.+...+...+....+...+..+.+.. .-...|++
T Consensus 211 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~-~~l~~~~~~~~l~~~v~~~g~~~~~~~-~~~~adv~ 288 (394)
T 2jjm_A 211 EKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEF-CTILQLVKNLHIEDRVLFLGKQDNVAE-LLAMSDLM 288 (394)
T ss_dssp -CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTTH-HHHHHHHHTTTCGGGBCCCBSCSCTHH-HHHTCSEE
T ss_pred CeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchHH-HHHHHHHHHcCCCCeEEEeCchhhHHH-HHHhCCEE
Confidence 456777763 1233334444443345678888776542 333333333332222222221111111 01246777
Q ss_pred EEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 138 LMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 138 l~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
++-.. .+.-|..+++-+- ..+|||+.......+ ....|-++++..|-+.++|.++|..++...
T Consensus 289 v~ps~-~e~~~~~~~EAma---------~G~PvI~~~~~~~~e----~v~~~~~g~~~~~~d~~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 289 LLLSE-KESFGLVLLEAMA---------CGVPCIGTRVGGIPE----VIQHGDTGYLCEVGDTTGVADQAIQLLKDE 351 (394)
T ss_dssp EECCS-CCSCCHHHHHHHH---------TTCCEEEECCTTSTT----TCCBTTTEEEECTTCHHHHHHHHHHHHHCH
T ss_pred Eeccc-cCCCchHHHHHHh---------cCCCEEEecCCChHH----HhhcCCceEEeCCCCHHHHHHHHHHHHcCH
Confidence 76543 3344555666553 347888764332222 234567889999999999999999988754
No 169
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=70.43 E-value=50 Score=28.41 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=42.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC---------CCeeEeCCCCHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG---------MDTFLNKPAQEHLLA 204 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G---------~~~~L~KP~~~~~L~ 204 (230)
.|++++-.. .+.-|..+++-+. ..+|||+... .-..+....| .++++..|-+.++|.
T Consensus 367 adv~v~pS~-~E~~g~~~lEAma---------~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la 432 (485)
T 2qzs_A 367 ADVILVPSR-FEPCGLTQLYGLK---------YGTLPLVRRT----GGLADTVSDCSLENLADGVASGFVFEDSNAWSLL 432 (485)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHH---------HTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHH
T ss_pred CCEEEECCc-cCCCcHHHHHHHH---------CCCCEEECCC----CCccceeccCccccccccccceEEECCCCHHHHH
Confidence 577766433 3344555555554 2378876532 2334445556 789999999999999
Q ss_pred HHHHHHH
Q 026988 205 AAIVETI 211 (230)
Q Consensus 205 ~~l~~~l 211 (230)
++|..++
T Consensus 433 ~~i~~ll 439 (485)
T 2qzs_A 433 RAIRRAF 439 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 170
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=69.93 E-value=9.6 Score=31.12 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+.+.++++++ ...+||++..+-.+.++...+++.|++.++.
T Consensus 166 ~~~~l~~i~~-------~~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 166 NPLNLSFIIE-------QAKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CHHHHHHHHH-------HCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHh-------cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 4778888875 1368999999988899999999999998854
No 171
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=69.70 E-value=41 Score=26.93 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=61.0
Q ss_pred HHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHh
Q 026988 80 GIRMLKKLGA-GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRL 158 (230)
Q Consensus 80 l~~~L~~~g~-~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~ 158 (230)
+.+.|.+.+. -|....+.+++....+.... .-..+|=+. +-..++.+.++.+++.
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~----------------------gGi~~iEvt--~~t~~a~e~I~~l~~~ 82 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAE----------------------NGLPAAEIT--FRSDAAVEAIRLLRQA 82 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHH----------------------TTCCEEEEE--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH----------------------CCCCEEEEe--CCCCCHHHHHHHHHHh
Confidence 4455555554 56667788888888876653 234454444 4455788999988863
Q ss_pred hhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 026988 159 EAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 159 ~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
. +.+ +|-.-.-.+.+....+.++|++ |+.-|-...++.+..+
T Consensus 83 ~------~~~-~iGaGTVlt~~~a~~Ai~AGA~-fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 83 Q------PEM-LIGAGTILNGEQALAAKEAGAT-FVVSPGFNPNTVRACQ 124 (232)
T ss_dssp C------TTC-EEEEECCCSHHHHHHHHHHTCS-EEECSSCCHHHHHHHH
T ss_pred C------CCC-EEeECCcCCHHHHHHHHHcCCC-EEEeCCCCHHHHHHHH
Confidence 2 233 3333334567888999999998 6666755455554433
No 172
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=68.73 E-value=27 Score=24.45 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=52.0
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..++|.++.|.... --+.-.|+++..+.+.+++.+.++...+ ...+.+|++.-.
T Consensus 2 ~~mkiaVIgD~dtv-----~GFrLaGi~~~~v~~~ee~~~~~~~l~~---------------------~~digIIlIte~ 55 (109)
T 2d00_A 2 VPVRMAVIADPETA-----QGFRLAGLEGYGASSAEEAQSLLETLVE---------------------RGGYALVAVDEA 55 (109)
T ss_dssp CCCCEEEEECHHHH-----HHHHHTTSEEEECSSHHHHHHHHHHHHH---------------------HCCCSEEEEETT
T ss_pred CccEEEEEeCHHHH-----HHHHHcCCeEEEeCCHHHHHHHHHHHhh---------------------CCCeEEEEEeHH
Confidence 45789999994332 2233457888888899988888876653 346899999987
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
+-+. --+.+..++ .....|+|+.-+.
T Consensus 56 ~a~~-i~~~i~~~~-------~~~~~P~Il~IPs 81 (109)
T 2d00_A 56 LLPD-PERAVERLM-------RGRDLPVLLPIAG 81 (109)
T ss_dssp TCSC-HHHHHHHHT-------TCCCCCEEEEESC
T ss_pred HHHh-hHHHHHHHH-------hCCCCeEEEEECC
Confidence 7652 223334443 1345787776554
No 173
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=68.68 E-value=56 Score=28.07 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=42.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcC---------CCeeEeCCCCHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSG---------MDTFLNKPAQEHLLA 204 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G---------~~~~L~KP~~~~~L~ 204 (230)
.|++++-.. .+.-|..+++-+. ..+|||+... .-..+....| .++++..|-+.++|.
T Consensus 366 adv~v~pS~-~E~~~~~~lEAma---------~G~PvI~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la 431 (485)
T 1rzu_A 366 CDAIIIPSR-FEPCGLTQLYALR---------YGCIPVVART----GGLADTVIDANHAALASKAATGVQFSPVTLDGLK 431 (485)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHH---------HTCEEEEESS----HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHH
T ss_pred CCEEEECcc-cCCCCHHHHHHHH---------CCCCEEEeCC----CChhheecccccccccccCCcceEeCCCCHHHHH
Confidence 577776433 2334555565554 2378886432 2334445555 788999999999999
Q ss_pred HHHHHHH
Q 026988 205 AAIVETI 211 (230)
Q Consensus 205 ~~l~~~l 211 (230)
++|..++
T Consensus 432 ~~i~~ll 438 (485)
T 1rzu_A 432 QAIRRTV 438 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 174
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=68.32 E-value=60 Score=28.24 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=61.4
Q ss_pred CcEEEEEe----ccHHHHHHHHHHHHhcCCeEE--EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEE
Q 026988 64 GLSVLLVE----DQAVLQRIGIRMLKKLGAGVT--LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLI 137 (230)
Q Consensus 64 ~~~iLiVd----d~~~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlv 137 (230)
+..++++| +.....+.++++-+..+..+. .+.+.++|..++. .-+|.|
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~--------------------------aGAD~I 209 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--------------------------NGADGI 209 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH--------------------------TTCSEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH--------------------------cCCCEE
Confidence 44566664 233344455554444465554 4667777766553 347777
Q ss_pred EEecC-------C----CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 138 LMDCQ-------M----GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 138 l~D~~-------m----p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.+-.. - .+...++++..+.+.. ....+|||.--+-.+..++..++.+|++...
T Consensus 210 ~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~----~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 210 KVGIGPGSICTTRIVAGVGVPQITAIEKCSSVA----SKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp EECC---------CCSCBCCCHHHHHHHHHHHH----TTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred EEeCCCCcCcccccccccchhHHHHHHHHHHHH----HhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 77321 0 0123456666665421 1246899998888889999999999999764
No 175
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=68.06 E-value=8 Score=31.87 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=32.2
Q ss_pred CCceEEEEecCCC------hHhHHHHHHcCCCeeEeCCCCHHHHHHHHHH
Q 026988 166 QSIPIIAFTALVT------ADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209 (230)
Q Consensus 166 ~~~pii~ls~~~~------~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~ 209 (230)
.++|+++++-++. ......+.++|+++++.-....++....+..
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 5689999976443 5568889999999999877777765544433
No 176
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=67.66 E-value=21 Score=28.32 Aligned_cols=41 Identities=7% Similarity=0.012 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
++.++.+++ . .++||++-.+-...++....+..|++.++.=
T Consensus 180 ~~~i~~l~~---~----~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 180 YDLLRRAKR---I----CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHH---H----CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHh---h----cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 445556654 1 2589888877777688889989999998764
No 177
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=67.24 E-value=6.9 Score=32.46 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=28.3
Q ss_pred CCcEEEEEec-----cHHHHHHHHHHHHhcC-CeEEEEcCc
Q 026988 63 EGLSVLLVED-----QAVLQRIGIRMLKKLG-AGVTLVKDG 97 (230)
Q Consensus 63 ~~~~iLiVdd-----~~~~~~~l~~~L~~~g-~~v~~~~~~ 97 (230)
+.++|||+.. -+.....|.++|++.| |.|.++.+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 3579999975 3667788999999998 999988774
No 178
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=66.76 E-value=11 Score=27.00 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=65.1
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+.+..+++==-+++++..+.+.|+.+|..+...... .....+|++|.|
T Consensus 4 LLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der-------------------------------~~~~eyDi~lTD 52 (117)
T 2kx7_A 4 LLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER-------------------------------LISQDYDIFLTD 52 (117)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS-------------------------------SSCCCCSEEEEE
T ss_pred cccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc-------------------------------CCCCcccEEEec
Confidence 3567788888899999999999999999887766332 015679999999
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCC-HHHHHHHHHHHHHhc
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQ-EHLLAAAIVETIARK 214 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~-~~~L~~~l~~~l~~~ 214 (230)
-. ....-+.+++++.... +..=...|+.-.|. .+++..+|..++.++
T Consensus 53 np---------------------~~~~~~tLLL~~d~~G------~~~l~p~~irvNyN~s~alidAIllLIEqq 100 (117)
T 2kx7_A 53 NP---------------------SNLTASGLLLSDDESG------VREIGPGQLCVNFNMSNAMQEAVLQLIEVQ 100 (117)
T ss_dssp SG---------------------GGCSSSEEEECTTCSS------EEEEETTEEEECSSCHHHHHHHHHHHHHHH
T ss_pred Cc---------------------cccCcCeEEEecCccc------ccccCCCeEEEeccchHHHHHHHHHHHHHH
Confidence 42 3344578888875432 11112345666666 456777777776654
No 179
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=66.32 E-value=52 Score=28.19 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++++..+.+.. ....+|||..-+-.+..++..++.+|++....
T Consensus 196 ~~~~l~~v~~~~----~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 196 QITAIADAAGVA----NEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHHH----GGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHH----hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455555555321 12358999988888899999999999997743
No 180
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=65.62 E-value=45 Score=25.78 Aligned_cols=55 Identities=24% Similarity=0.377 Sum_probs=36.3
Q ss_pred CccEEEEecCCC--------CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 133 HYDLILMDCQMG--------SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 133 ~~dlvl~D~~mp--------~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.+|.|++....+ ...+++.++.+++. ..++||++..+-. .++..++.+.|++.+.
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~------~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ------GISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT------TCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh------CCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 478888622222 12367888888741 1238988877765 7777888889999764
No 181
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=64.63 E-value=45 Score=25.44 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=39.2
Q ss_pred CccEEEEecCCCC-------CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 133 HYDLILMDCQMGS-------MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 133 ~~dlvl~D~~mp~-------~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.+|.|+++-..|. ..+++.++.+++. .++||++..+-. .++..++.+.|++.+.
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-------VKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHH-------CSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh-------CCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 4889998754442 3478888877642 258888877765 7888888999999874
No 182
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=63.58 E-value=33 Score=31.51 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=62.2
Q ss_pred CcEEEEE----eccHHHHHHHHHHHHhcCCeEEEEc---CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 64 GLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVK---DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 64 ~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~---~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
+.+||+. |-+..-..++..+|...||+|.... ..++.++.+. ...||+
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~-------------------------~~~~di 152 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAK-------------------------EVNADL 152 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHH-------------------------HHTCSE
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-------------------------HcCCCE
Confidence 3477777 6677777889999999999997653 4455555554 457999
Q ss_pred EEEecCCCC-CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc-----CCCeeEe
Q 026988 137 ILMDCQMGS-MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS-----GMDTFLN 195 (230)
Q Consensus 137 vl~D~~mp~-~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~-----G~~~~L~ 195 (230)
|.+...|.. ++ --++++.+++ .+.++||++=-...+.... ..+. |++.|-.
T Consensus 153 VgLS~l~t~~~~~m~~~i~~Lr~------~g~~i~ViVGGa~~~~~~a--~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 153 IGLSGLITPSLDEMVNVAKEMER------QGFTIPLLIGGATTSKAHT--AVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp EEEECCSTHHHHHHHHHHHHHHH------TTCCSCEEEESTTCCHHHH--HHHTGGGCSSCEEECC
T ss_pred EEEEecCCCCHHHHHHHHHHHHH------cCCCCeEEEEccccchhhh--hhhhhhcccCCeEEEC
Confidence 999988753 22 2335566654 3446777554443333322 1123 8886644
No 183
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=63.43 E-value=23 Score=27.37 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=36.8
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHHHhhhhhhcCC-CceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 133 HYDLILMDCQMG-SMDGCKATRVIRRLEAEAETGQ-SIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 133 ~~dlvl~D~~mp-~~dg~~l~~~lr~~~~~~~~~~-~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+|.|.+ .| +..|++.++.+++. .+ ++||++..+-. .++...+++.|++.+..
T Consensus 121 G~d~v~v---~~t~~~g~~~~~~l~~~------~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 121 GAQALKI---FPSSAFGPQYIKALKAV------LPSDIAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp TCSEEEE---TTHHHHCHHHHHHHHTT------SCTTCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred CCCEEEE---ecCCCCCHHHHHHHHHh------ccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 4788875 22 12356777777641 22 58998888765 78888999999998863
No 184
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=63.32 E-value=69 Score=27.71 Aligned_cols=101 Identities=9% Similarity=0.135 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCC--eEEEEcC--cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHH
Q 026988 77 QRIGIRMLKKLGA--GVTLVKD--GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152 (230)
Q Consensus 77 ~~~l~~~L~~~g~--~v~~~~~--~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~ 152 (230)
...+.+..++.|. .|..... .++..+.+... ....|++++-.. .+.-|..++
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a-----------------------~~~~dv~v~pS~-~Eg~~~~~l 376 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYL-----------------------ASKGSVFALTSF-YEPFGLAPV 376 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHH-----------------------HHTTCEEEECCS-CBCCCSHHH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhc-----------------------CcCCCEEEECcc-cCCCCcHHH
Confidence 5677777777664 3555544 35555555421 011277776432 233355555
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+-+- ..+|||+... ....+....|.++++..|-+.++|.++|..++...
T Consensus 377 EAma---------~G~PvI~s~~----~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 377 EAMA---------SGLPAVVTRN----GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESE 425 (499)
T ss_dssp HHHH---------TTCCEEEESS----BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCH
T ss_pred HHHH---------cCCCEEEecC----CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCH
Confidence 5553 3478886532 12344456677889999999999999999888643
No 185
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=63.02 E-value=12 Score=30.78 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCC------ChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALV------TADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~------~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
+++++.+|+ ...++|+++++-++ .......+.++|+++++.--...++.....
T Consensus 85 ~~~v~~~r~------~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 85 FELIAQIRA------RNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHH------HCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHh------cCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 445555553 23568999997533 245688889999999988767776644433
No 186
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=62.58 E-value=18 Score=29.30 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=44.0
Q ss_pred CccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCH
Q 026988 133 HYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQE 200 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~ 200 (230)
.+|.|++=.-.|+..| ++-++++|++... .+.+++ |.+.+.-+.+....+.++|+|-++. +--++
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~--~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp 232 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISS--TDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSY 232 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHH--HTSCCE-EEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCH
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHh--cCCCee-EEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCH
Confidence 4777765444465554 4555556554322 233444 4456666788899999999997654 43355
Q ss_pred HHHHHHHHHHH
Q 026988 201 HLLAAAIVETI 211 (230)
Q Consensus 201 ~~L~~~l~~~l 211 (230)
.+-.+.+++.+
T Consensus 233 ~~~i~~l~~~i 243 (246)
T 3inp_A 233 KQTIDKMRDEL 243 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 187
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=62.55 E-value=4.2 Score=31.45 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=26.7
Q ss_pred cE-EEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 65 LS-VLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 65 ~~-iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
|+ |+|+|........+.+.|++.|+.+.++...+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~ 35 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDE 35 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCC
Confidence 35 89999776666678899999999888877653
No 188
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=62.24 E-value=62 Score=27.01 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=40.0
Q ss_pred CccEEEEecCCC-----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 133 HYDLILMDCQMG-----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 133 ~~dlvl~D~~mp-----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.+|.|+++-.-. ....++++..+++. ..+|||+..+-.+.+....++..|++.+.
T Consensus 130 GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~-------~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 130 GADAVIAEGMEAGGHIGKLTTMTLVRQVATA-------ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHH-------CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCCCCCCCccHHHHHHHHHHh-------cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 478887753211 13457788887741 35899998888889999999999999764
No 189
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=62.03 E-value=58 Score=25.85 Aligned_cols=72 Identities=7% Similarity=0.136 Sum_probs=44.6
Q ss_pred CccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-----eCCCCH
Q 026988 133 HYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-----NKPAQE 200 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-----~KP~~~ 200 (230)
.+|+|++=.--|+.+| ++-++++|++. .+++ |.+.+.-+.+....+.++|+|-++ .+.-++
T Consensus 138 ~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~------~~~~-I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~ 210 (227)
T 1tqx_A 138 LINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY------KNLN-IQVDGGLNIETTEISASHGANIIVAGTSIFNAEDP 210 (227)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC------TTCE-EEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSH
T ss_pred CcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc------cCCe-EEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 5888877665666554 44555555432 2444 455666778899999999999764 343345
Q ss_pred HHHHHHHHHHH
Q 026988 201 HLLAAAIVETI 211 (230)
Q Consensus 201 ~~L~~~l~~~l 211 (230)
.+-.+.+++.+
T Consensus 211 ~~~i~~l~~~~ 221 (227)
T 1tqx_A 211 KYVIDTMRVSV 221 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444454433
No 190
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=61.88 E-value=65 Score=26.40 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC-CCCC-CHHHHH
Q 026988 76 LQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ-MGSM-DGCKAT 152 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~-mp~~-dg~~l~ 152 (230)
....+.+..+..|..+. .++|.+++...+ ...+|+|=+.-. +... -.++..
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~--------------------------~~ga~iIGinnr~l~t~~~dl~~~ 210 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERAL--------------------------KLSSRLLGVNNRNLRSFEVNLAVS 210 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHT--------------------------TSCCSEEEEECBCTTTCCBCTHHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH--------------------------hcCCCEEEECCCCCccCCCChHHH
Confidence 34556666677888654 566777765544 345777765522 1111 024445
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHHHHH
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIVETIA 212 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~~~l~ 212 (230)
..+... ....+|+|.-++-.+.++...+.+.|++++|. |+-++.. +++.++.
T Consensus 211 ~~L~~~-----ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~---~~~~l~~ 267 (272)
T 3tsm_A 211 ERLAKM-----APSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAA---ATRALLT 267 (272)
T ss_dssp HHHHHH-----SCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHH---HHHHHHH
T ss_pred HHHHHh-----CCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHH---HHHHHHh
Confidence 555432 12358999999999999999999999999976 5544443 4444444
No 191
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=60.94 E-value=37 Score=23.31 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHh
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINA 110 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~ 110 (230)
..+.-|++-|.+..-.+...+-....||.+.++.+.++.-..+...+..
T Consensus 75 gaqvliiiydqdqnrleefsrevrrrgfevrtvtspddfkkslerlire 123 (134)
T 2l69_A 75 GAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp CCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHH
Confidence 3445667778777777888888889999999999999988888766654
No 192
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=60.81 E-value=61 Score=27.06 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=40.1
Q ss_pred CccEEEEecCC-C----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 133 HYDLILMDCQM-G----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 133 ~~dlvl~D~~m-p----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.+|.|+++-.- . ....++++..+++. ..+|||+-.+-.+.++...++..|++.+.
T Consensus 144 GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~-------~~iPviaaGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 144 GADAVIAEGMESGGHIGEVTTFVLVNKVSRS-------VNIPVIAAGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHH-------CSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCCCccCCCccHHHHHHHHHHH-------cCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 47777775422 1 13467777777641 25899999888889999999999999874
No 193
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=60.36 E-value=62 Score=25.66 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=56.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCce
Q 026988 90 GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIP 169 (230)
Q Consensus 90 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~p 169 (230)
-|....+.+++....+..+. .-.+++=+.++ .-++++.++.+++. .+. .
T Consensus 17 ~Vir~~~~~~a~~~a~al~~----------------------gGi~~iEvt~~--t~~a~~~I~~l~~~------~p~-~ 65 (217)
T 3lab_A 17 PVIVIDDLVHAIPMAKALVA----------------------GGVHLLEVTLR--TEAGLAAISAIKKA------VPE-A 65 (217)
T ss_dssp EEECCSCGGGHHHHHHHHHH----------------------TTCCEEEEETT--STTHHHHHHHHHHH------CTT-S
T ss_pred EEEEcCCHHHHHHHHHHHHH----------------------cCCCEEEEeCC--CccHHHHHHHHHHH------CCC-C
Confidence 45556788888888776653 23555555444 45799999999863 233 4
Q ss_pred EEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 026988 170 IIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAI 207 (230)
Q Consensus 170 ii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l 207 (230)
+|-.-.-.+.+....+.++|++ |+.-|..-.++.+..
T Consensus 66 ~IGAGTVlt~~~a~~ai~AGA~-fivsP~~~~evi~~~ 102 (217)
T 3lab_A 66 IVGAGTVCTADDFQKAIDAGAQ-FIVSPGLTPELIEKA 102 (217)
T ss_dssp EEEEECCCSHHHHHHHHHHTCS-EEEESSCCHHHHHHH
T ss_pred eEeeccccCHHHHHHHHHcCCC-EEEeCCCcHHHHHHH
Confidence 5555555578889999999999 666675444444433
No 194
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=60.11 E-value=13 Score=28.86 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=44.4
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhccccc-chhccccCCcccccCCCCccEEE
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH-QIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
..+.+++|||.+-.--+-..+.+.|.+.|++|..+.-..+.+..+... .. .+...|-...+.. .-..+|+|+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~------~~~~~~~~Dl~~~~~~-~~~~~D~vi 89 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER------GASDIVVANLEEDFSH-AFASIDAVV 89 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT------TCSEEEECCTTSCCGG-GGTTCSEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC------CCceEEEcccHHHHHH-HHcCCCEEE
Confidence 346788999999988888888888888899988765444433333210 11 1122222222222 123689998
Q ss_pred EecCCC
Q 026988 139 MDCQMG 144 (230)
Q Consensus 139 ~D~~mp 144 (230)
.-....
T Consensus 90 ~~ag~~ 95 (236)
T 3e8x_A 90 FAAGSG 95 (236)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 776654
No 195
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=59.64 E-value=19 Score=29.58 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=46.0
Q ss_pred CCCccEEEEecCCCC--CCH--------------------HHHHHHHHHhhhhhhcCCCceEEEEecCC------ChHhH
Q 026988 131 SPHYDLILMDCQMGS--MDG--------------------CKATRVIRRLEAEAETGQSIPIIAFTALV------TADNE 182 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~--~dg--------------------~~l~~~lr~~~~~~~~~~~~pii~ls~~~------~~~~~ 182 (230)
.. .|+|.+++-..+ .|| +++++.+|+ . .++||++++-.+ .....
T Consensus 41 ~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~------~-~~~Pii~m~y~n~v~~~g~~~f~ 112 (271)
T 1ujp_A 41 PY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRA------L-TEKPLFLMTYLNPVLAWGPERFF 112 (271)
T ss_dssp GG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------H-CCSCEEEECCHHHHHHHCHHHHH
T ss_pred hc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh------c-CCCCEEEEecCcHHHHhhHHHHH
Confidence 45 899999876643 333 344555553 2 468999985333 13456
Q ss_pred HHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 183 RECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 183 ~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
..+.++|+++++.-....+++...+..+
T Consensus 113 ~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 113 GLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 7788999999998777666655544433
No 196
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=59.53 E-value=64 Score=25.51 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=65.4
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc---------CcHHHHHHHHHHHHhcccccchhccccCCcccccCC
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK---------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (230)
...+.+||++--+. -+..+.+.|.+.|+.|..+. +..+..+.+. .
T Consensus 130 ~~~~~~vL~~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~-------------------------~ 183 (254)
T 4es6_A 130 RVHDPKVLIMRGEG-GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVR-------------------------A 183 (254)
T ss_dssp CSSSCEEEEEECSS-CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHH-------------------------H
T ss_pred cCCCCEEEEEcCCc-cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHH-------------------------h
Confidence 35677898876543 34678888988998765432 2234444443 4
Q ss_pred CCccEEEEecCCCCCCHHH-HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCK-ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~-l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
..+|+|++= .-++.+ +++.+... ......++++.++ +.....+.+.|+... ..+..+.+.|.++|.+
T Consensus 184 ~~~d~v~ft----S~s~v~~~~~~~~~~---~~~l~~~~~~aIG----~~Ta~~l~~~G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 184 ERLNGLVVS----SGQGLQNLYQLAAAD---WPEIGRLPLFVPS----PRVAEMARELGAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp TTCCEEECC----SHHHHHHHHHHHGGG---HHHHTTSCEEESS----HHHHHHHHHTTCSSEEECSSSSHHHHHHHHHH
T ss_pred CCCCEEEEc----CHHHHHHHHHHhhHH---HHHHhCCeEEEEC----HHHHHHHHHcCCCceEECCCCCHHHHHHHHHh
Confidence 468887752 122333 22222210 0112346677665 345566677888754 4777889998888764
No 197
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=59.48 E-value=11 Score=31.34 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEE--ecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHHHHHhccCc
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAF--TALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~l--s~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~~~l~~~~~~ 217 (230)
.|++++++++. ..+|||++ .+-.++++...+++.|+++++. +--++.....++...+......
T Consensus 186 d~elI~~Ike~-------~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~~~ 255 (291)
T 3o07_A 186 PVSLLKDVLEK-------GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFDNP 255 (291)
T ss_dssp CHHHHHHHHHH-------TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTCH
T ss_pred CHHHHHHHHHc-------cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhccCH
Confidence 47888888752 46899887 4444788999999999998854 4456788888888777655433
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=59.35 E-value=63 Score=28.50 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=8.6
Q ss_pred CCccEEEEecC
Q 026988 132 PHYDLILMDCQ 142 (230)
Q Consensus 132 ~~~dlvl~D~~ 142 (230)
..+|+||+|.-
T Consensus 181 ~~~DvVIIDTa 191 (443)
T 3dm5_A 181 KGVDIIIVDTA 191 (443)
T ss_dssp TTCSEEEEECC
T ss_pred CCCCEEEEECC
Confidence 45899999964
No 199
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=59.18 E-value=14 Score=28.90 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=41.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe---EEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG---VTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~---v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
+.+|..||-++......++.++..|+. +... .|+.+.+..+ ....||+|++
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-------------------------~~~~fD~V~~ 135 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-------------------------ANDSYQLVFG 135 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-------------------------CTTCEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-------------------------cCCCcCeEEE
Confidence 358889999999888888888887754 4433 3333332211 1357999999
Q ss_pred ecCCCCCCHHHHHHHHH
Q 026988 140 DCQMGSMDGCKATRVIR 156 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr 156 (230)
|...+. -.++++.+.
T Consensus 136 d~~~~~--~~~~l~~~~ 150 (221)
T 3dr5_A 136 QVSPMD--LKALVDAAW 150 (221)
T ss_dssp CCCTTT--HHHHHHHHH
T ss_pred cCcHHH--HHHHHHHHH
Confidence 975432 333455443
No 200
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=58.77 E-value=75 Score=26.12 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=50.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
...+|.|++|+.-...+--++...++.. .....++++=+...+..++..++..|++.. ++|--+.+++...+..
T Consensus 58 ~~GaD~v~lDlEh~~~~~~~~~~~l~a~-----~~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 58 GAGFDWLLIDGEHAPNNVQTVLTQLQAI-----APYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp TSCCSEEEEESSSSSCCHHHHHHHHHHH-----TTSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCccchHHHHHHHHHHH-----HhcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 5679999999976655555555555532 122456776677777888999999999975 4444567776655543
No 201
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=58.28 E-value=89 Score=26.81 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++.+..+++.. ....+|||...+-.+..+..+++..|++.+..
T Consensus 241 ~~~~l~~v~~~~----~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 241 QITAICDVYEAC----NNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHHHHHHHH----TTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHH----hhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 455566665421 12469999998988899999999999998754
No 202
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=58.08 E-value=34 Score=28.40 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=46.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
+-++.+||-++.....+++.++... ++. ...|+.+++..+.. ....+|+||+|--
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~-~~~V~~~D~~~~L~~l~~-----------------------~~~~fdLVfiDPP 168 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNK-KVYVNHTDGVSKLNALLP-----------------------PPEKRGLIFIDPS 168 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTS-CEEEECSCHHHHHHHHCS-----------------------CTTSCEEEEECCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCC-cEEEEeCcHHHHHHHhcC-----------------------CCCCccEEEECCC
Confidence 4589999999999999999887643 343 44576777765530 1236999999965
Q ss_pred CCC-CCHHHHHHHHHH
Q 026988 143 MGS-MDGCKATRVIRR 157 (230)
Q Consensus 143 mp~-~dg~~l~~~lr~ 157 (230)
-.. .+.-++++.|.+
T Consensus 169 Ye~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 169 YERKEEYKEIPYAIKN 184 (283)
T ss_dssp CCSTTHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 442 234445555543
No 203
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=56.53 E-value=50 Score=26.27 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+++++.+++ ...+|||...+-.+.++...+++.|+++++.
T Consensus 189 ~~~i~~l~~-------~~~ipvia~GGI~~~ed~~~~~~~Gadgv~v 228 (266)
T 2w6r_A 189 TEMIRFVRP-------LTTLPIIASGGAGKMEHFLEAFLAGADAALA 228 (266)
T ss_dssp HHHHHHHGG-------GCCSCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH-------HcCCCEEEeCCCCCHHHHHHHHHcCCHHHHc
Confidence 777887764 2368999999988889999999999998754
No 204
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=56.20 E-value=52 Score=25.24 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=52.3
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCC--cccccCCCCccEEEEecCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS--NLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlvl~D~~m 143 (230)
+|+|++-...- ..+.+.|...|+.+..++.-.+..+.+... . ...+...+... .+....-...|+|++-..-
T Consensus 2 ~iiIiG~G~~G-~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~--~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 2 KVIIIGGETTA-YYLARSMLSRKYGVVIINKDRELCEEFAKK---L--KATIIHGDGSHKEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CEEEECCHHHH-HHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S--SSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred EEEEECCCHHH-HHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c--CCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence 56666654433 444445555566666665544444433211 0 00111111111 1222224568888875432
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.. .-..++...++ ..+...||+.+. +..........|++..+.
T Consensus 76 d~-~n~~~~~~a~~------~~~~~~iia~~~--~~~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 76 DE-VNLFIAQLVMK------DFGVKRVVSLVN--DPGNMEIFKKMGITTVLN 118 (218)
T ss_dssp HH-HHHHHHHHHHH------TSCCCEEEECCC--SGGGHHHHHHHTCEECCC
T ss_pred cH-HHHHHHHHHHH------HcCCCeEEEEEe--CcchHHHHHHCCCCEEEC
Confidence 11 12223334443 234455665443 445566677889885544
No 205
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=55.99 E-value=53 Score=23.51 Aligned_cols=47 Identities=6% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHH
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLA 204 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~ 204 (230)
++++.+++ ...+++++|+.............|...|+..+-...+..
T Consensus 43 ~~l~~l~~--------~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~ 89 (162)
T 2p9j_A 43 IGIKLLQK--------MGITLAVISGRDSAPLITRLKELGVEEIYTGSYKKLEIY 89 (162)
T ss_dssp HHHHHHHT--------TTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--CHHHH
T ss_pred HHHHHHHH--------CCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCCHHHH
Confidence 67777763 347899999988777777777889998886543333433
No 206
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=55.60 E-value=46 Score=27.72 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhhhcCCCceEE--EEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHHHHHhccC
Q 026988 149 CKATRVIRRLEAEAETGQSIPII--AFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii--~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~~~l~~~~~ 216 (230)
+++++++++ ..++|++ .-++-.+.++...++..|++.++. |.-++......+...+.....
T Consensus 196 ~~ll~~i~~-------~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~~~ 263 (297)
T 4adt_A 196 IDLILLTRK-------LKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNFNN 263 (297)
T ss_dssp HHHHHHHHH-------HTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH-------hcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhhCC
Confidence 455555553 1346776 455555889999999999998864 555777767777666664433
No 207
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=55.09 E-value=26 Score=32.51 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCeEEEE---cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC-CCC-HH
Q 026988 75 VLQRIGIRMLKKLGAGVTLV---KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG-SMD-GC 149 (230)
Q Consensus 75 ~~~~~l~~~L~~~g~~v~~~---~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp-~~d-g~ 149 (230)
.-...+..+|+..||+|... .+ ++..+... ...+|+|.+...+. .+. .-
T Consensus 525 ~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~-------------------------e~~adiv~lSsl~~~~~~~~~ 578 (637)
T 1req_B 525 GREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFK-------------------------KSGAQVADLCSSAKVYAQQGL 578 (637)
T ss_dssp HHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHHH-------------------------HHTCSEEEEECCHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHH-------------------------hcCCCEEEEecccHHHHHHHH
Confidence 33456778899999987754 23 55555554 34688988876554 222 24
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChH--hHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTAD--NERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~--~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
++++.|++ .+. ..|++.+..... ......+ |+|+|+.--.+..++...+...+
T Consensus 579 ~v~~~Lk~------aG~--~~V~vgG~P~~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~~~l 633 (637)
T 1req_B 579 EVAKALKA------AGA--KALYLSGAFKEFGDDAAEAEK-LIDGRLFMGMDVVDTLSSTLDIL 633 (637)
T ss_dssp HHHHHHHH------TTC--SEEEEESCGGGGGGGHHHHHH-HCCCEECTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHh------CCC--CeEEEeCCCCccchhhHHHHh-ccceEecCCcCHHHHHHHHHHHh
Confidence 46677765 222 335677753221 2445556 99999988888877776665544
No 208
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=55.08 E-value=39 Score=26.56 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=43.5
Q ss_pred cc-EEEEecCCCC---CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc---CCCeeEe------CCCCH
Q 026988 134 YD-LILMDCQMGS---MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS---GMDTFLN------KPAQE 200 (230)
Q Consensus 134 ~d-lvl~D~~mp~---~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~---G~~~~L~------KP~~~ 200 (230)
++ +++++..-.+ .-.+++++++++ ...+|||+..+-.+.++...+++. |++.++. .|++.
T Consensus 160 ~~~i~~~~~~~~~~~~g~~~~~~~~i~~-------~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~ 232 (244)
T 1vzw_A 160 CARYVVTDIAKDGTLQGPNLELLKNVCA-------ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTL 232 (244)
T ss_dssp CCCEEEEEC-------CCCHHHHHHHHH-------TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCEEEEeccCcccccCCCCHHHHHHHHH-------hcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCH
Confidence 56 4556654221 123778888874 236899999888888999999998 9997743 45665
Q ss_pred HHHHHH
Q 026988 201 HLLAAA 206 (230)
Q Consensus 201 ~~L~~~ 206 (230)
.++.+.
T Consensus 233 ~~~~~~ 238 (244)
T 1vzw_A 233 EEALEA 238 (244)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 209
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=54.62 E-value=27 Score=27.38 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...|.|+++-..|+.+| ++.++++|+..+. ...++|+++.-+ -+.+....+.++|++.+..
T Consensus 139 ~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~--~~~~~pi~v~GG-I~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 139 DAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAE--RGLNPWIEVDGG-VGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHH--HTCCCEEEEESS-CCTTTHHHHHHHTCCEEEE
T ss_pred hhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHh--cCCCceEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 35789988887765443 3455666653321 123577665554 4477777888999997743
No 210
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=54.49 E-value=47 Score=24.62 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=40.2
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
..+++.+|-++..... ...|...|..+..+.+..+++.++. ....|+++.
T Consensus 108 ~dL~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~-------------------------~g~~D~~~~ 157 (228)
T 2pyy_A 108 DDLPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ-------------------------TKKADAVVF 157 (228)
T ss_dssp GGCTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH-------------------------TTSSSEEEE
T ss_pred HHcCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH-------------------------cCCCCEEEe
Confidence 3467888888777653 3445567888888999999999997 778999999
Q ss_pred ec
Q 026988 140 DC 141 (230)
Q Consensus 140 D~ 141 (230)
|.
T Consensus 158 ~~ 159 (228)
T 2pyy_A 158 DA 159 (228)
T ss_dssp EH
T ss_pred cH
Confidence 73
No 211
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=54.45 E-value=29 Score=28.29 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=41.7
Q ss_pred ccEEEEecC---------CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc--CCCeeEeCCCCHHH
Q 026988 134 YDLILMDCQ---------MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS--GMDTFLNKPAQEHL 202 (230)
Q Consensus 134 ~dlvl~D~~---------mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~--G~~~~L~KP~~~~~ 202 (230)
.|++++-.. ..+.-|..+++-+. ..+|||.... ....+.... |.++++..| +.++
T Consensus 232 adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma---------~G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-d~~~ 297 (342)
T 2iuy_A 232 AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV---------SGTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-APDE 297 (342)
T ss_dssp CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH---------TTCCEEECCT----TTHHHHGGGGEEECCSSSCC-CHHH
T ss_pred CCEEEECCcccccccccccccCccHHHHHHHh---------cCCCEEEcCC----CChHHHhcccCCCceEEcCC-CHHH
Confidence 567665433 13344556666554 3477775432 224445556 778899999 9999
Q ss_pred HHHHHHHHHH
Q 026988 203 LAAAIVETIA 212 (230)
Q Consensus 203 L~~~l~~~l~ 212 (230)
+.++|.+++.
T Consensus 298 l~~~i~~l~~ 307 (342)
T 2iuy_A 298 ARRTLAGLPA 307 (342)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 212
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=54.02 E-value=37 Score=25.62 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=42.1
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+++.+|-++..... ...+.+.+...+..+..+.+..+++.++. ....|+++.|
T Consensus 108 dL~g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-------------------------~G~vDa~~~~ 161 (239)
T 1lst_A 108 SLKGKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDLT-------------------------AGRLDAALQD 161 (239)
T ss_dssp HHTTCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHHH-------------------------TTSCSEEEEE
T ss_pred HhCCCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHHH-------------------------cCCCCEEEeC
Confidence 356778877766554 35566666556788889999999999997 7789999998
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 162 ~ 162 (239)
T 1lst_A 162 E 162 (239)
T ss_dssp H
T ss_pred c
Confidence 3
No 213
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=52.99 E-value=53 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCeEE---EEcCcHHHHH
Q 026988 75 VLQRIGIRMLKKLGAGVT---LVKDGEAAVE 102 (230)
Q Consensus 75 ~~~~~l~~~L~~~g~~v~---~~~~~~~al~ 102 (230)
.+-..|.+.|.++|+++. ++.|..+.+.
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~ 70 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKIL 70 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHH
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHH
Confidence 455689999999999764 4556555443
No 214
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=51.62 E-value=51 Score=27.53 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=42.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC---------------ee--EeC
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD---------------TF--LNK 196 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~---------------~~--L~K 196 (230)
.|++++-.. .+.-|..+++-+- ..+|||.... .-..+....|.+ ++ +..
T Consensus 274 adv~v~pS~-~E~~~~~~lEAma---------~G~PvI~s~~----~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~ 339 (413)
T 3oy2_A 274 CDVIVNCSS-GEGFGLCSAEGAV---------LGKPLIISAV----GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEG 339 (413)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHT---------TTCCEEEECC----HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEE
T ss_pred CCEEEeCCC-cCCCCcHHHHHHH---------cCCCEEEcCC----CChHHHHccCcccccccccccccccccCcceeeC
Confidence 567776332 3334555555443 4578886432 233444555555 77 888
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 026988 197 PAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 197 P~~~~~L~~~l~~~l~~~~ 215 (230)
|-+.++|.++| .++....
T Consensus 340 ~~d~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 340 IIDVDDLVEAF-TFFKDEK 357 (413)
T ss_dssp ECCHHHHHHHH-HHTTSHH
T ss_pred CCCHHHHHHHH-HHhcCHH
Confidence 99999999999 8886543
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=51.21 E-value=1.3e+02 Score=26.41 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=9.6
Q ss_pred CCCccEEEEecC
Q 026988 131 SPHYDLILMDCQ 142 (230)
Q Consensus 131 ~~~~dlvl~D~~ 142 (230)
...||+||+|.-
T Consensus 177 ~~~~DvvIIDTa 188 (433)
T 3kl4_A 177 KNKMDIIIVDTA 188 (433)
T ss_dssp TTTCSEEEEEEC
T ss_pred hcCCCEEEEECC
Confidence 357999999964
No 216
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=50.61 E-value=74 Score=23.59 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=24.7
Q ss_pred CCCccEEEEecCCCCCC--H-------HHHHHHHHHhhhhhhcCCCceEEEEecC
Q 026988 131 SPHYDLILMDCQMGSMD--G-------CKATRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d--g-------~~l~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
..+||+|++.+..-+.. . -++++.+|+ ..+..+||+++..
T Consensus 72 ~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~------~~p~~~ii~~~~~ 120 (200)
T 4h08_A 72 NTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRK------YAPKAKLIWANTT 120 (200)
T ss_dssp HSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHH------HCTTCEEEEECCC
T ss_pred cCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhh------hCCCccEEEeccC
Confidence 45799999977665532 1 224455554 3566788887653
No 217
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=50.57 E-value=34 Score=27.82 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=44.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
...||++|+=--.|...|-.-.+.+-+ ...+|.|++|............+.|+-.+|.|.
T Consensus 62 ~~~pDfvI~isPN~a~PGP~~ARE~l~-------~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 62 DFEPDFIVYGGPNPAAPGPSKAREMLA-------DSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HHCCSEEEEECSCTTSHHHHHHHHHHH-------TSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETT
T ss_pred hcCCCEEEEECCCCCCCCchHHHHHHH-------hCCCCEEEEcCCcchhhHHHHHhcCCcEEEEec
Confidence 457999998887888889887776653 367999999988777766555566666556663
No 218
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=50.54 E-value=48 Score=26.09 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe------CCCCHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN------KPAQEHLLAAAI 207 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~------KP~~~~~L~~~l 207 (230)
+++++++++. ..+|||...+-.+.++...+++.|+++++. .|+++.++.+.+
T Consensus 185 ~~~i~~l~~~-------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 185 LRLTRMVAEA-------VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL 242 (252)
T ss_dssp HHHHHHHHHH-------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHH-------cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8888888752 368999999988889999999999998754 356776665544
No 219
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=50.50 E-value=39 Score=26.94 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=46.0
Q ss_pred CccEEEEecCCCCCCH-------HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC-CC-----C
Q 026988 133 HYDLILMDCQMGSMDG-------CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK-PA-----Q 199 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K-P~-----~ 199 (230)
..|+|++=.--|+..| ++-++++|++... .+.+++ |.+.+.-+.+....+.++|+|.++.= -. +
T Consensus 128 ~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~--~~~~~~-I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 128 KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRER--EGLEYE-IEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHH--HTCCCE-EEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhc--cCCCce-EEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence 5788765223344333 5556666664432 233455 55667677888999999999988775 21 3
Q ss_pred -HHHHHHHHHHHHH
Q 026988 200 -EHLLAAAIVETIA 212 (230)
Q Consensus 200 -~~~L~~~l~~~l~ 212 (230)
+.+-.+.+++.+.
T Consensus 205 ~~~~~~~~l~~~~~ 218 (231)
T 3ctl_A 205 NIDEAWRIMTAQIL 218 (231)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 4455555555444
No 220
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=50.36 E-value=73 Score=24.17 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=44.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe--EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG--VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..+|-++......++.+...|.. +. ...+..+.+..+... .....||+|++|
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---------------------~~~~~fD~v~~~ 147 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA---------------------GQAWQYDLIYID 147 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT---------------------TCTTCEEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc---------------------cCCCCccEEEEC
Confidence 458999999999999999999887753 44 345655555443200 001679999998
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
...+ +-..+++.+.
T Consensus 148 ~~~~--~~~~~l~~~~ 161 (225)
T 3tr6_A 148 ADKA--NTDLYYEESL 161 (225)
T ss_dssp SCGG--GHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHH
Confidence 7522 2334455553
No 221
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=50.23 E-value=81 Score=23.90 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=45.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..+|-++......++.+...|. ++. ...|..+.+..+... ....||+|++|
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~----------------------~~~~fD~v~~d 140 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE----------------------KYEPFDFIFID 140 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT----------------------TCCCCSEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc----------------------CCCCcCEEEEc
Confidence 45899999999999999999988776 244 445665555544310 01569999999
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
...+ +-..+++.+.
T Consensus 141 ~~~~--~~~~~l~~~~ 154 (223)
T 3duw_A 141 ADKQ--NNPAYFEWAL 154 (223)
T ss_dssp SCGG--GHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHH
Confidence 7533 2234555554
No 222
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=50.21 E-value=20 Score=27.60 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=27.6
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
+|+|||=-.-+...+.+.|+..|+.+.++.+.++
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 7999996666667788999999999998887543
No 223
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=50.08 E-value=1.1e+02 Score=25.33 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCccEEEEecCCC----C---CCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMG----S---MDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp----~---~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...|.|+++-.-+ + ...++++..+++ ..++||++-.+-.+.++...++..|++.+..
T Consensus 137 ~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~-------~~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 137 LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAAN-------RLRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHT-------TCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEEECCCCCcCCCCccccHHHHHHHHHH-------hcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3478888753211 1 246777777763 2368999988888888999999999997643
No 224
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=49.62 E-value=45 Score=26.73 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..++++++++. .++||++-.+-.+.+....+...|++.++.=
T Consensus 189 ~~~~i~~v~~~-------~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV-------TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH-------CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh-------cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 44567777642 3589999888888999999999999988754
No 225
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=49.62 E-value=1e+02 Score=25.04 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=38.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
..|++++.. |.-+++-+- ..+|+|+...... .......| .+++..+ +.++|.++|..++.
T Consensus 282 ~ad~~v~~s------g~~~lEA~a---------~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 282 RSYLMLTDS------GGVQEEAPS---------LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp TCSEEEECC------HHHHHHHHH---------HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hCcEEEECC------CChHHHHHh---------cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 467887653 433444433 2478887632111 12345677 8888877 99999999998886
Q ss_pred h
Q 026988 213 R 213 (230)
Q Consensus 213 ~ 213 (230)
.
T Consensus 342 ~ 342 (375)
T 3beo_A 342 D 342 (375)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=49.53 E-value=1e+02 Score=24.88 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=49.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
...+|.|++|+.-.-.+--++...++.. .....++++=+...+...+..++..|++.. ++|--+.+++...+..
T Consensus 37 ~~GaD~v~lDlE~~~~~~~~~~~~~~a~-----~~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 37 TSGYDWLLIDGEHAPNTIQDLYHQLQAV-----APYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp TTCCSEEEEETTTSCCCHHHHHHHHHHH-----TTSSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHH-----HhCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 5679999999976555555555555532 112455666566677888899999999975 4454567776665544
No 227
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=49.43 E-value=34 Score=26.30 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=39.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe--EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG--VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|.-||-++......++.+...|.. +. ...|..+.+..+.. ......||+|++|
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~---------------------~~~~~~fD~V~~d 141 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK---------------------KYDVDTLDMVFLD 141 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT---------------------TSCCCCCSEEEEC
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHH---------------------hcCCCceEEEEEc
Confidence 458999999999999999999887752 44 34455444332210 0001579999999
Q ss_pred cCCC
Q 026988 141 CQMG 144 (230)
Q Consensus 141 ~~mp 144 (230)
....
T Consensus 142 ~~~~ 145 (221)
T 3u81_A 142 HWKD 145 (221)
T ss_dssp SCGG
T ss_pred CCcc
Confidence 7543
No 228
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=49.42 E-value=92 Score=24.32 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=25.3
Q ss_pred CccEEEEecCCCCC-------C----HHHHHHHHHHhhhhhhcCCCceEEEEecCCC--hH--hHHHHHHcCCCe
Q 026988 133 HYDLILMDCQMGSM-------D----GCKATRVIRRLEAEAETGQSIPIIAFTALVT--AD--NERECFNSGMDT 192 (230)
Q Consensus 133 ~~dlvl~D~~mp~~-------d----g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~--~~--~~~~~~~~G~~~ 192 (230)
..-+|++|...++. | |..+++.|.+ ..+-.|.++++... .. ....++...+..
T Consensus 85 ~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~-------~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~ 152 (276)
T 3jy6_A 85 QMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQ-------QGYQHVVVLTSELELSRTRQERYRGILAAAQD 152 (276)
T ss_dssp SSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHT-------TTCCEEEEEEECSTTCHHHHHHHHHHHTTCSE
T ss_pred CCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHH-------cCCCeEEEEecCCCCCchHHHHHHHHHHHHHh
Confidence 44466666655432 2 3444455542 23346666666543 21 234445444443
No 229
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=49.21 E-value=58 Score=25.43 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=44.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..+|-++......++.++..|+ ++. ...++.+.+..+... . .....||+|++|
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~--~------------------~~~~~fD~I~~d 154 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG--Q------------------ESEGSYDFGFVD 154 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS--T------------------TCTTCEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--c------------------CCCCCcCEEEEC
Confidence 45899999999999999999988876 344 345665554443210 0 002469999999
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
...+ +-.++++.+.
T Consensus 155 ~~~~--~~~~~l~~~~ 168 (237)
T 3c3y_A 155 ADKP--NYIKYHERLM 168 (237)
T ss_dssp SCGG--GHHHHHHHHH
T ss_pred CchH--HHHHHHHHHH
Confidence 6432 2334455544
No 230
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=49.21 E-value=50 Score=26.84 Aligned_cols=34 Identities=26% Similarity=0.134 Sum_probs=24.1
Q ss_pred CcEEEEEecc--------------------HHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 64 GLSVLLVEDQ--------------------AVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 64 ~~~iLiVdd~--------------------~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
.||||++... ......+.+.|.+.|++|.++...
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4688887765 234456778888889998877643
No 231
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=49.21 E-value=57 Score=29.24 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=65.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCC--cccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS--NLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlvl~D~ 141 (230)
..+|+|++-...- ..+.+.|.+.|+.+.+++.-.+.++.+... . ...+..++... -+....-...+.+++
T Consensus 127 ~~hviI~G~g~~g-~~la~~L~~~~~~vvvid~~~~~~~~~~~~---~--~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-- 198 (565)
T 4gx0_A 127 RGHILIFGIDPIT-RTLIRKLESRNHLFVVVTDNYDQALHLEEQ---E--GFKVVYGSPTDAHVLAGLRVAAARSIIA-- 198 (565)
T ss_dssp CSCEEEESCCHHH-HHHHHHTTTTTCCEEEEESCHHHHHHHHHS---C--SSEEEESCTTCHHHHHHTTGGGCSEEEE--
T ss_pred CCeEEEECCChHH-HHHHHHHHHCCCCEEEEECCHHHHHHHHHh---c--CCeEEEeCCCCHHHHHhcCcccCCEEEE--
Confidence 3478888888766 455566666778888887777666655411 0 11222222221 133334456788887
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...+..-..++..+|+ .+ .++|++-.. +.+.......+|++..+.
T Consensus 199 t~~D~~n~~~~~~ar~------~~-~~~iiar~~--~~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 199 NLSDPDNANLCLTVRS------LC-QTPIIAVVK--EPVHGELLRLAGANQVVP 243 (565)
T ss_dssp CSCHHHHHHHHHHHHT------TC-CCCEEEECS--SGGGHHHHHHHTCSEEEC
T ss_pred eCCcHHHHHHHHHHHH------hc-CceEEEEEC--CHHHHHHHHHcCCCEEEC
Confidence 2333223334444553 33 678877654 445566677899996654
No 232
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=49.18 E-value=89 Score=24.09 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+++.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+...+... ......++.+|+
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~d~ 73 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA------------------GQPQPLIIALNL 73 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------------------TSCCCEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc------------------CCCCceEEEecc
Confidence 56778999998888888888888889999887765555554443332221 113445666666
Q ss_pred CCCCCCHHH-HHHHHHHhhhhhhcCCCceEEEEec
Q 026988 142 QMGSMDGCK-ATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 142 ~mp~~dg~~-l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
...+.+.++ +++.+.+. ...+-+++..+
T Consensus 74 d~~~~~~~~~~~~~~~~~------~g~id~lv~nA 102 (247)
T 3i1j_A 74 ENATAQQYRELAARVEHE------FGRLDGLLHNA 102 (247)
T ss_dssp TTCCHHHHHHHHHHHHHH------HSCCSEEEECC
T ss_pred ccCCHHHHHHHHHHHHHh------CCCCCEEEECC
Confidence 555544433 44555432 12355666544
No 233
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=49.07 E-value=92 Score=25.80 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=44.8
Q ss_pred ccEEEE-ecCCCCCCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 134 YDLILM-DCQMGSMDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 134 ~dlvl~-D~~mp~~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
+|.|++ |-+.--..| -+.++..|+. .+..||.+-.. +.+...++.++|+|-.....++++++.+++..+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~------~~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKL------DSNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHH------CTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhh------CCCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 344544 544332223 3456666652 34567777543 446778889999999999999999999888754
No 234
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=48.93 E-value=71 Score=24.73 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=43.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCC--CCccEEE
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS--PHYDLIL 138 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl 138 (230)
+.+|..+|-++......++.+...|. .+. ...+..+.+..+.. .. ..||+|+
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~-----------------------~~~~~~fD~V~ 153 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-----------------------GKPLPEFDLIF 153 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT-----------------------SSSCCCEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-----------------------cCCCCCcCEEE
Confidence 35899999999999999888887775 244 34555554444320 01 5799999
Q ss_pred EecCCCCCCHHHHHHHHH
Q 026988 139 MDCQMGSMDGCKATRVIR 156 (230)
Q Consensus 139 ~D~~mp~~dg~~l~~~lr 156 (230)
+|... .+-.++++.+.
T Consensus 154 ~d~~~--~~~~~~l~~~~ 169 (232)
T 3cbg_A 154 IDADK--RNYPRYYEIGL 169 (232)
T ss_dssp ECSCG--GGHHHHHHHHH
T ss_pred ECCCH--HHHHHHHHHHH
Confidence 99652 22334455544
No 235
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=48.86 E-value=48 Score=27.37 Aligned_cols=42 Identities=7% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCceEEEEec-CCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 166 QSIPIIAFTA-LVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 166 ~~~pii~ls~-~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+|+|+... ....+ ....| .+++..| +.++|.++|..++..
T Consensus 300 ~G~PvI~~~~~~~~~e----~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPE----AVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp GTCCEEEESSCCSCHH----HHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCCcch----hhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 4578887643 22222 34557 8899988 999999999988864
No 236
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=48.63 E-value=80 Score=23.37 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=52.1
Q ss_pred EEEEEe--ccHHHHHHHHHHHHhcCCeEEEEc-CcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 66 SVLLVE--DQAVLQRIGIRMLKKLGAGVTLVK-DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 66 ~iLiVd--d~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
+|++++ ........+...|...|..+.... ++.+....+. .-.+=|++|+ +.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~------------------------~~~~~d~~i~-iS 95 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLA------------------------NLRPTDLMIG-VS 95 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHH------------------------TCCTTEEEEE-EC
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHh------------------------cCCCCCEEEE-Ee
Confidence 677765 566666778888888899988887 5665544443 0222344443 56
Q ss_pred CCCCC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh
Q 026988 143 MGSMD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181 (230)
Q Consensus 143 mp~~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~ 181 (230)
.++.+ -.++++..++ ..+++|.+|+......
T Consensus 96 ~sG~t~~~~~~~~~ak~--------~g~~vi~IT~~~~s~l 128 (187)
T 3sho_A 96 VWRYLRDTVAALAGAAE--------RGVPTMALTDSSVSPP 128 (187)
T ss_dssp CSSCCHHHHHHHHHHHH--------TTCCEEEEESCTTSHH
T ss_pred CCCCCHHHHHHHHHHHH--------CCCCEEEEeCCCCCcc
Confidence 66544 3455555553 3589999998765543
No 237
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=48.44 E-value=39 Score=27.22 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=66.2
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc---------CcHHHHHHHHHHHHhcccccchhccccCCcccccCC
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK---------DGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~---------~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (230)
...+.+||++-.+. -+..+.+.|.+.|+.|..+. +..+..+.+. .
T Consensus 138 ~~~g~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~-------------------------~ 191 (269)
T 3re1_A 138 AVPGSRVLIMRGNE-GRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVE-------------------------V 191 (269)
T ss_dssp CSSSCEEEEEECSS-CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHH-------------------------H
T ss_pred cCCCCEEEEEccCc-cHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHH-------------------------c
Confidence 35677999886543 34678888999998765542 2223333343 3
Q ss_pred CCccEEEEecCCCCCCHHH-HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCK-ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~-l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
..+|+|++=- -++.+ +++.+... ......+++++++ +.....+.+.|+... ..+..+.+.|.++|..
T Consensus 192 ~~~d~v~ftS----~s~v~~~~~~~~~~---~~~l~~~~~~aIG----~~Ta~~l~~~G~~~~~va~~~t~~~l~~al~~ 260 (269)
T 3re1_A 192 ERLNGLVVSS----GQGFEHLLQLAGDS---WPDLAGLPLFVPS----PRVASLAQAAGARNVIDCRGASAAALLAALRD 260 (269)
T ss_dssp TTCCEEECSS----HHHHTTTHHHHGGG---HHHHTTSCEEESS----HHHHHHHHHHTCSSEEECSSSSHHHHHHHHHH
T ss_pred CCCCEEEEcC----HHHHHHHHHHhhHH---HHHHhCCeEEEEC----HHHHHHHHHCCCCceEECCCCCHHHHHHHHHH
Confidence 4678777521 12222 12222210 0012346777665 344556667788654 4777899999998876
Q ss_pred HHH
Q 026988 210 TIA 212 (230)
Q Consensus 210 ~l~ 212 (230)
.+.
T Consensus 261 ~~~ 263 (269)
T 3re1_A 261 QPQ 263 (269)
T ss_dssp SCC
T ss_pred Hhc
Confidence 553
No 238
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=48.28 E-value=83 Score=24.68 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=45.0
Q ss_pred Ccc-EEEEecCCCC-CC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe------CCCCHHH
Q 026988 133 HYD-LILMDCQMGS-MD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN------KPAQEHL 202 (230)
Q Consensus 133 ~~d-lvl~D~~mp~-~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~------KP~~~~~ 202 (230)
.++ +++.+..-.+ .. .+++++++++ ...+|||...+-.+.++...+++.|+++++. .|+++.+
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~-------~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~ 236 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRP-------LTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRE 236 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGG-------GCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHH
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHH-------hcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHH
Confidence 356 4445554222 12 3778888874 1368999998888889999999999998754 3456665
Q ss_pred HHHHH
Q 026988 203 LAAAI 207 (230)
Q Consensus 203 L~~~l 207 (230)
..+.+
T Consensus 237 ~~~~l 241 (253)
T 1thf_D 237 LKEYL 241 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 239
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=48.26 E-value=1.1e+02 Score=24.82 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee------EeCCCCHHHHHHHHHHHHHhcc
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF------LNKPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~------L~KP~~~~~L~~~l~~~l~~~~ 215 (230)
+++++.+++ ...+|||..-+-.+.++..+++..|++.+ +..|....++.+.+...+....
T Consensus 230 ~~~i~~i~~-------~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~~g 295 (311)
T 1ep3_A 230 LKLIHQVAQ-------DVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYR 295 (311)
T ss_dssp HHHHHHHHT-------TCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-------hcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 356666663 23689998888888999999999999865 3456666777777777665443
No 240
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=48.06 E-value=40 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=17.7
Q ss_pred CCCccEEEEecCCCCCC-----HHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMD-----GCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-----g~~l~~~lr~ 157 (230)
...||+||+|...+... ..++++.+++
T Consensus 157 ~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 157 PASRDVIIRDVFAGAITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHH
T ss_pred CCCCCEEEECCCCccccchhhhHHHHHHHHHH
Confidence 45799999998665321 2466666654
No 241
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=47.77 E-value=74 Score=24.97 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=37.6
Q ss_pred EEEEecCCCCCCH---HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 136 LILMDCQMGSMDG---CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 136 lvl~D~~mp~~dg---~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+.+.|........ +++++.+++ ...+|+++..+..+.+....+++.|++.++.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~-------~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAE-------RVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHT-------TCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHH-------hCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 4566766443332 344555552 2469999999999999999999999998765
No 242
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=47.54 E-value=67 Score=22.17 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=55.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccC--CcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG--SNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dlvl~D~ 141 (230)
+.+|+|++-...- ..+.+.|...|+++..++...+..+.+.. ........+.. +.+.......+|+|+.-.
T Consensus 6 ~~~v~I~G~G~iG-~~~a~~l~~~g~~v~~~d~~~~~~~~~~~------~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 78 (144)
T 2hmt_A 6 NKQFAVIGLGRFG-GSIVKELHRMGHEVLAVDINEEKVNAYAS------YATHAVIANATEENELLSLGIRNFEYVIVAI 78 (144)
T ss_dssp CCSEEEECCSHHH-HHHHHHHHHTTCCCEEEESCHHHHHTTTT------TCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred CCcEEEECCCHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHHHH------hCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence 3478889875544 55666667778887777655444333220 01111111111 111111123578888755
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.-+......++..++. .+.. ++++.+. +........+.|++..+
T Consensus 79 ~~~~~~~~~~~~~~~~------~~~~-~ii~~~~--~~~~~~~l~~~g~~~vi 122 (144)
T 2hmt_A 79 GANIQASTLTTLLLKE------LDIP-NIWVKAQ--NYYHHKVLEKIGADRII 122 (144)
T ss_dssp CSCHHHHHHHHHHHHH------TTCS-EEEEECC--SHHHHHHHHHHTCSEEE
T ss_pred CCchHHHHHHHHHHHH------cCCC-eEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 4321112234444443 2233 5555543 33344455678888544
No 243
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=47.50 E-value=21 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=27.2
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.|+|+|-...+...+.+.|++.|+.+.++....
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~ 34 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT 34 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC
Confidence 489999877777889999999999888877644
No 244
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=47.31 E-value=1e+02 Score=24.15 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=43.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe--EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG--VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..||-++......++.+...|.. +. ...|..+.+..+. ....||+|++|
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~------------------------~~~~fD~V~~d 143 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG------------------------ECPAFDLIFID 143 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC------------------------SCCCCSEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC------------------------CCCCeEEEEEC
Confidence 458999999999999999999887763 44 3445544333221 12379999998
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
...+ +-..+++.+.
T Consensus 144 ~~~~--~~~~~l~~~~ 157 (248)
T 3tfw_A 144 ADKP--NNPHYLRWAL 157 (248)
T ss_dssp SCGG--GHHHHHHHHH
T ss_pred CchH--HHHHHHHHHH
Confidence 7432 2234455544
No 245
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=47.21 E-value=37 Score=28.44 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=44.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
...+.+.+++.+++. ..+|+|.+|-. +--++-+.++..+ . -..
T Consensus 211 eVEv~tl~e~~eAl~--------------------------aGaDiImLDn~----s~~~l~~av~~~~------~-~v~ 253 (300)
T 3l0g_A 211 AIECDNISQVEESLS--------------------------NNVDMILLDNM----SISEIKKAVDIVN------G-KSV 253 (300)
T ss_dssp EEEESSHHHHHHHHH--------------------------TTCSEEEEESC----CHHHHHHHHHHHT------T-SSE
T ss_pred EEEECCHHHHHHHHH--------------------------cCCCEEEECCC----CHHHHHHHHHhhc------C-ceE
Confidence 346788899988886 34899999953 2222222222211 1 246
Q ss_pred EEEecCCChHhHHHHHHcCCCee
Q 026988 171 IAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
+..|+.-+.+.+....+.|+|.+
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 77888889999999999999844
No 246
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=47.11 E-value=1.4e+02 Score=26.53 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.4
Q ss_pred CceEEEEecCCChHhHHHHHHcCCCee
Q 026988 167 SIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 167 ~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
.+|||...+-.+..+..+++..|++..
T Consensus 358 ~ipVia~GGI~~~~di~kala~GAd~V 384 (514)
T 1jcn_A 358 GVPIIADGGIQTVGHVVKALALGASTV 384 (514)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCee
Confidence 589999988888999999999999976
No 247
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=46.82 E-value=80 Score=23.81 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=40.9
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCC-eEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGA-GVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~-~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+|.-||-++......++.+...|. ++... .|..+. +. .....||+|++|...
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~---~~-----------------------~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LA-----------------------QKGTPHNIVFVDPPF 132 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HS-----------------------SCCCCEEEEEECCSS
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---Hh-----------------------hcCCCCCEEEECCCC
Confidence 788888888888888888877765 44333 333222 11 013579999998653
Q ss_pred CCCCHHHHHHHHHH
Q 026988 144 GSMDGCKATRVIRR 157 (230)
Q Consensus 144 p~~dg~~l~~~lr~ 157 (230)
...+..++++.+.+
T Consensus 133 ~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 133 RRGLLEETINLLED 146 (202)
T ss_dssp STTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh
Confidence 33444556666654
No 248
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=46.68 E-value=83 Score=26.30 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=31.4
Q ss_pred CceEEEEecC-----CChHhHHHHHHcCCCeeEe-CCCCHHHHHHHHHHHHHhccC
Q 026988 167 SIPIIAFTAL-----VTADNERECFNSGMDTFLN-KPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 167 ~~pii~ls~~-----~~~~~~~~~~~~G~~~~L~-KP~~~~~L~~~l~~~l~~~~~ 216 (230)
.+|.|++.-. .+..+.....+.|+.-++. +.++.+.|.+.|.+++.....
T Consensus 272 G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~ 327 (365)
T 3s2u_A 272 GLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPET 327 (365)
T ss_dssp TCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHH
T ss_pred CCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHH
Confidence 3687766321 1223345566788765554 346899999999999875443
No 249
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=46.08 E-value=96 Score=25.04 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=25.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~ 183 (230)
..||+|++... +.+...+++.+++ .+..+|++...+..+.....
T Consensus 189 ~~~dav~~~~~--~~~a~~~~~~~~~------~g~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 189 ANPDAILVGAS--GTAAALPQTTLRE------RGYNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp HCCSEEEEECC--HHHHHHHHHHHHH------TTCCSEEEECGGGCSHHHHH
T ss_pred cCCCEEEEecC--cchHHHHHHHHHH------cCCCccEEeccCcCcHHHHH
Confidence 46899988532 2334555566654 34567886666665554443
No 250
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=46.05 E-value=51 Score=25.63 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=31.8
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
..++.+|||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 55 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLG 55 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 345668888888877777888888888888777665555444443
No 251
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=45.99 E-value=77 Score=23.37 Aligned_cols=67 Identities=28% Similarity=0.221 Sum_probs=41.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC-eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~-~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+|.-||-++......++.+...|. ++. ...|..+....+. ...||+|++|.-
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-------------------------~~~fD~i~~~~p 122 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT-------------------------TSPVDLVLADPP 122 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC-------------------------SSCCSEEEECCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc-------------------------CCCccEEEECCC
Confidence 4789999999888888888887775 343 3445444332211 457999999855
Q ss_pred CCCC--CHHHHHHHHH
Q 026988 143 MGSM--DGCKATRVIR 156 (230)
Q Consensus 143 mp~~--dg~~l~~~lr 156 (230)
.... +-.++++.+.
T Consensus 123 ~~~~~~~~~~~l~~~~ 138 (189)
T 3p9n_A 123 YNVDSADVDAILAALG 138 (189)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHH
Confidence 4332 2334555554
No 252
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=45.67 E-value=55 Score=25.83 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCcEEEEEecc------HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 63 EGLSVLLVEDQ------AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 63 ~~~~iLiVdd~------~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
...+|++|+-. +.+...+.+.|++.|+++..+...++..+.+. ..|.
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~---------------------------~ad~ 82 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE---------------------------KAEI 82 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH---------------------------HCSE
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh---------------------------cCCE
Confidence 34689998743 36778889999999998888754333334443 2677
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q 026988 137 ILMDCQMGSMDGCKATRVIRR 157 (230)
Q Consensus 137 vl~D~~mp~~dg~~l~~~lr~ 157 (230)
|++ |+.+-..+++.+++
T Consensus 83 I~l----pGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 83 IIV----GGGNTFQLLKESRE 99 (229)
T ss_dssp EEE----CCSCHHHHHHHHHH
T ss_pred EEE----CCCcHHHHHHHHHH
Confidence 776 77777777777765
No 253
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=45.63 E-value=1.7e+02 Score=27.88 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=42.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.|++++-. ..+.-|..+++-+- ..+|||+. .... .......|.++++..|.+.+++.++|..++
T Consensus 665 aDvfV~PS-~~EgfglvllEAMA---------~G~PVIas-d~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL 728 (816)
T 3s28_A 665 KGAFVQPA-LYEAFGLTVVEAMT---------CGLPTFAT-CKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFF 728 (816)
T ss_dssp TCEEEECC-SCBSSCHHHHHHHH---------TTCCEEEE-SSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHH
T ss_pred CeEEEECC-CccCccHHHHHHHH---------cCCCEEEe-CCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHH
Confidence 46666532 23445666666554 34788874 2222 334456788999999999999999997766
No 254
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=45.48 E-value=65 Score=28.72 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=40.3
Q ss_pred CCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|+|.+|...+... -.+.++++++ ..+.+||++- .-.+.+....+.++|++.+..
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~------~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRA------AYPHLEIIGG-NVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHH------HCTTCCEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred ccCceEEeccccccchHHHHHHHHHHH------HCCCceEEEc-ccCcHHHHHHHHHhCCCEEEE
Confidence 3589999998877543 3567777775 2345777762 234567788889999998775
No 255
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=45.43 E-value=78 Score=22.94 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=20.8
Q ss_pred CcEEEEEeccHHH----------HHHHHHHHHhcCCeEEEE
Q 026988 64 GLSVLLVEDQAVL----------QRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 64 ~~~iLiVdd~~~~----------~~~l~~~L~~~g~~v~~~ 94 (230)
+.+|++++|+-.. ...+.+.|...|..+.+.
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~ 42 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLI 42 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEE
Confidence 3477888777544 567788887776655554
No 256
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=45.38 E-value=46 Score=25.17 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=26.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
|+|||.+-.-.+-..+.+.|.+.|++|..+.-..+.+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA 38 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 46888887777777777777777888876654444433
No 257
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=45.25 E-value=54 Score=25.44 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=43.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHH-HHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVE-AMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
+.+|..||-++......++.++..|. ++. ...|..+.+. .+ ...||+|++
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--------------------------~~~fD~V~~ 148 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN--------------------------DKVYDMIFI 148 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT--------------------------TSCEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc--------------------------cCCccEEEE
Confidence 45889999999988888888888775 343 3455544433 22 457999999
Q ss_pred ecCCCCCCHHHHHHHHH
Q 026988 140 DCQMGSMDGCKATRVIR 156 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr 156 (230)
|...+. -.++++.+.
T Consensus 149 ~~~~~~--~~~~l~~~~ 163 (232)
T 3ntv_A 149 DAAKAQ--SKKFFEIYT 163 (232)
T ss_dssp ETTSSS--HHHHHHHHG
T ss_pred cCcHHH--HHHHHHHHH
Confidence 975433 334555554
No 258
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=45.23 E-value=82 Score=22.63 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=39.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe--EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG--VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
+.+|..+|-++......++.+...|.. +....+..+. +.. ....||+|+++.
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~-----------------------~~~~~D~i~~~~ 102 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDD-----------------------VPDNPDVIFIGG 102 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGG-----------------------CCSCCSEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhc-----------------------cCCCCCEEEECC
Confidence 458889999888888888888777653 5333343221 110 026799999988
Q ss_pred CCCCCCHHHHHHHHH
Q 026988 142 QMGSMDGCKATRVIR 156 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr 156 (230)
.+.. .++++.+.
T Consensus 103 ~~~~---~~~l~~~~ 114 (178)
T 3hm2_A 103 GLTA---PGVFAAAW 114 (178)
T ss_dssp -TTC---TTHHHHHH
T ss_pred cccH---HHHHHHHH
Confidence 7765 33455554
No 259
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=44.86 E-value=37 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=26.3
Q ss_pred EEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 66 SVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
+|+|||.-......+.+.|++.|+.+.++.+.
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 79999966666677889999999998888765
No 260
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.82 E-value=1.1e+02 Score=24.09 Aligned_cols=20 Identities=10% Similarity=-0.193 Sum_probs=13.1
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q 026988 194 LNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 194 L~KP~~~~~L~~~l~~~l~~ 213 (230)
..-.++.+.-.+.+.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~ 184 (294)
T 3qk7_A 165 QKADPTRPGGYLAASRLLAL 184 (294)
T ss_dssp EEECSSHHHHHHHHHHHHHS
T ss_pred ecCCCCHHHHHHHHHHHHcC
Confidence 34456667777777777765
No 261
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=44.37 E-value=24 Score=29.21 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=56.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++|.+|-....-...+.+.|++.|+.+.......+. ...+|+|++
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~------------------------------~~~~DlvIv---- 74 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEE------------------------------LENFDFIVS---- 74 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGG------------------------------GGGSSEEEE----
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccc------------------------------cCCCCEEEE----
Confidence 4688888532211678899999999998776543221 124788775
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
-+.|| .+++..+.. ... +||+-+.. |-.+||. +++++++..+|..++.
T Consensus 75 lGGDG-T~L~aa~~~-----~~~-~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 75 VGGDG-TILRILQKL-----KRC-PPIFGINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EECHH-HHHHHHTTC-----SSC-CCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred ECCCH-HHHHHHHHh-----CCC-CcEEEECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 24566 233444421 123 89998764 4455666 3666777777777665
No 262
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=44.25 E-value=60 Score=25.46 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.7
Q ss_pred cCCCcEEEEEecc--HHHHHHHHHHHHhcCCeEEEEcC
Q 026988 61 VLEGLSVLLVEDQ--AVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 61 ~~~~~~iLiVdd~--~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
..++.+|||.+-. .-+-..+.+.|.+.|++|..+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r 48 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYV 48 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEES
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEec
Confidence 3567789999966 66777788888888999887743
No 263
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=44.13 E-value=1.5e+02 Score=25.25 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHH
Q 026988 73 QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKAT 152 (230)
Q Consensus 73 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~ 152 (230)
...-...|.+..++.|..+.+..-..++++.+. . +++=++-+.-.++.-+.|+
T Consensus 76 ~~e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~-------------------------~--~~v~~~KI~S~~~~N~pLL 128 (350)
T 3g8r_A 76 QPEQMQKLVAEMKANGFKAICTPFDEESVDLIE-------------------------A--HGIEIIKIASCSFTDWPLL 128 (350)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHH-------------------------H--TTCCEEEECSSSTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEeccCCHHHHHHHH-------------------------H--cCCCEEEECcccccCHHHH
Confidence 344557788999999999888887788888886 2 3333445555677888888
Q ss_pred HHHHHhhhhhhcCCCceEEEEecCCChHhHHHHH
Q 026988 153 RVIRRLEAEAETGQSIPIIAFTALVTADNERECF 186 (230)
Q Consensus 153 ~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~ 186 (230)
+.+-+ ...|||+-|+....+.+..+.
T Consensus 129 ~~va~--------~gKPviLstGmstl~Ei~~Av 154 (350)
T 3g8r_A 129 ERIAR--------SDKPVVASTAGARREDIDKVV 154 (350)
T ss_dssp HHHHT--------SCSCEEEECTTCCHHHHHHHH
T ss_pred HHHHh--------hCCcEEEECCCCCHHHHHHHH
Confidence 88864 357999999988877766553
No 264
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=44.13 E-value=73 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=22.0
Q ss_pred CcEEEEEeccHHH----------HHHHHHHHHhcCCeEEEE
Q 026988 64 GLSVLLVEDQAVL----------QRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 64 ~~~iLiVdd~~~~----------~~~l~~~L~~~g~~v~~~ 94 (230)
..+|++++|+-.. ...+.+.|...++.+.++
T Consensus 5 ~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~ 45 (215)
T 2vpt_A 5 TIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFV 45 (215)
T ss_dssp EEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEEC
T ss_pred ceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEE
Confidence 4689999998654 456777887777766543
No 265
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=44.12 E-value=46 Score=26.53 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=37.5
Q ss_pred EEEEecCCCCC-C--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 136 LILMDCQMGSM-D--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 136 lvl~D~~mp~~-d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
+.+.|....+. . -+++++.+++ ...+|+++..+..+.+....+++.|++..+.=
T Consensus 47 i~v~d~~~~~~~~g~~~~~i~~i~~-------~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 47 ILLTSIDRDGTKSGYDTEMIRFVRP-------LTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EEEEETTTSSCSSCCCHHHHHHHGG-------GCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred EEEEecCcccCCCcccHHHHHHHHH-------hcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 44567554321 1 2667777763 24689999888778888899999999987653
No 266
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=43.90 E-value=1.2e+02 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=32.5
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
..+.+..+||.+-.--+=..+.+.|.+.|++|..+....+.++
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 59 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS 59 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3456778999998888888888888889999887654444333
No 267
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=43.90 E-value=1.3e+02 Score=26.30 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=38.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh--HHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN--ERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~--~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
.|++++-... .-|..+++-+- ..+|||.+.+...... .......|..+++.. +.+++.+++..++
T Consensus 454 adv~v~ps~~--~~g~~~lEAma---------~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~--~~~~la~~i~~l~ 520 (568)
T 2vsy_A 454 ADLFLDTHPY--NAHTTASDALW---------TGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA--DDAAFVAKAVALA 520 (568)
T ss_dssp CSEEECCSSS--CCSHHHHHHHH---------TTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS--SHHHHHHHHHHHH
T ss_pred CCEEeeCCCC--CCcHHHHHHHh---------CCCCEEeccCCCchHHHHHHHHHHCCChhhhcC--CHHHHHHHHHHHh
Confidence 5666643332 34555665543 3478887544321111 112234577766654 8889999888887
Q ss_pred Hhc
Q 026988 212 ARK 214 (230)
Q Consensus 212 ~~~ 214 (230)
...
T Consensus 521 ~~~ 523 (568)
T 2vsy_A 521 SDP 523 (568)
T ss_dssp HCH
T ss_pred cCH
Confidence 643
No 268
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=43.70 E-value=1.4e+02 Score=24.80 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=41.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.|++++-.. .+.-|..+++-+- ..+|||.... ....+....|.++++.. +.++|.++|..++..
T Consensus 316 ad~~v~ps~-~E~~~~~~lEAma---------~G~PvI~~~~----~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 316 SDVILQMSI-REGFGLTVTEAMW---------KGKPVIGRAV----GGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp CSEEEECCS-SCSSCHHHHHHHH---------TTCCEEEESC----HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred CCEEEECCC-cCCCccHHHHHHH---------cCCCEEEccC----CCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 567665433 2334555555553 3478776432 23344456677889886 899999999988874
Q ss_pred c
Q 026988 214 K 214 (230)
Q Consensus 214 ~ 214 (230)
.
T Consensus 380 ~ 380 (416)
T 2x6q_A 380 P 380 (416)
T ss_dssp H
T ss_pred H
Confidence 4
No 269
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=43.48 E-value=1.5e+02 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.++++..+++. ..+|||+..+-.+.+....++..|++.+.
T Consensus 196 ~~~~l~~i~~~-------~~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 196 LLSLLAQVREA-------VDIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp HHHHHHHHHHH-------CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHh-------cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 47888887741 36899988888789999999999998764
No 270
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=43.28 E-value=1.1e+02 Score=25.26 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=39.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHh--cC----CeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKK--LG----AGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~--~g----~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
..+|..||-++...+..++.+.. .| -++. ...|+.+.+.. ....||+
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--------------------------~~~~fD~ 154 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--------------------------TEERYDV 154 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--------------------------CCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--------------------------cCCCccE
Confidence 34778888887777777766643 11 2333 33444433221 1457999
Q ss_pred EEEecCCCC-CCH-------HHHHHHHHH
Q 026988 137 ILMDCQMGS-MDG-------CKATRVIRR 157 (230)
Q Consensus 137 vl~D~~mp~-~dg-------~~l~~~lr~ 157 (230)
|++|...+. +++ .++++.+++
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~ 183 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKA 183 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHH
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHH
Confidence 999987664 112 466666654
No 271
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=43.16 E-value=1.1e+02 Score=23.26 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=44.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..+|-++......++.+...|. ++. ...+..+.+..+... .....||+|++|
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~---------------------~~~~~~D~v~~d 152 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA---------------------GEAGTFDVAVVD 152 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT---------------------TCTTCEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc---------------------CCCCCccEEEEC
Confidence 35899999999999999999888775 344 344555544433210 001579999998
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
.. ..+-.++++.+.
T Consensus 153 ~~--~~~~~~~l~~~~ 166 (229)
T 2avd_A 153 AD--KENCSAYYERCL 166 (229)
T ss_dssp SC--STTHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHH
Confidence 65 223344555554
No 272
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=42.95 E-value=97 Score=22.74 Aligned_cols=53 Identities=8% Similarity=0.123 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~ 209 (230)
.++++.+++ ..++++++|+.........+...|.+.|+....+..+....+.+
T Consensus 41 ~~~l~~L~~--------~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~ 93 (180)
T 1k1e_A 41 GLGIKMLMD--------ADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETACFDLMK 93 (180)
T ss_dssp HHHHHHHHH--------TTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHH
T ss_pred HHHHHHHHH--------CCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCcHHHHHHHHH
Confidence 356666664 34789999998877777777788999888765555554444433
No 273
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=42.90 E-value=19 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCeEEEEc
Q 026988 78 RIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~ 95 (230)
..+.+.|+..+++|....
T Consensus 43 ~~l~~aL~~~~~~v~~~~ 60 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMP 60 (256)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCceEEEEe
Confidence 456677777789888773
No 274
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=42.83 E-value=33 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=22.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA 89 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~ 89 (230)
-+|.-||.|+......++.+++.|+
T Consensus 52 g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 52 KHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4899999999999999999998885
No 275
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=42.82 E-value=63 Score=25.81 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCccEEEEecCCC--CCCH--------------------HHHHHHHHHhhhhhhcCCCceEEEEecCCChH---hHHHHH
Q 026988 132 PHYDLILMDCQMG--SMDG--------------------CKATRVIRRLEAEAETGQSIPIIAFTALVTAD---NERECF 186 (230)
Q Consensus 132 ~~~dlvl~D~~mp--~~dg--------------------~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~---~~~~~~ 186 (230)
...|+|-++...+ -+|| +++++.+|+ ..++|+++++.. +.. ....+.
T Consensus 44 ~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~-------~~~~Pv~~m~~~-~~~~~~~~~~a~ 115 (262)
T 1rd5_A 44 CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTP-------ELSCPVVLLSYY-KPIMFRSLAKMK 115 (262)
T ss_dssp TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGG-------GCSSCEEEECCS-HHHHSCCTHHHH
T ss_pred cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-------cCCCCEEEEecC-cHHHHHHHHHHH
Confidence 3588888887554 2343 444555553 246898887532 221 233488
Q ss_pred HcCCCeeEeCCCCHHHHHHHHH
Q 026988 187 NSGMDTFLNKPAQEHLLAAAIV 208 (230)
Q Consensus 187 ~~G~~~~L~KP~~~~~L~~~l~ 208 (230)
++|+++++.-....+++.+.+.
T Consensus 116 ~aGadgv~v~d~~~~~~~~~~~ 137 (262)
T 1rd5_A 116 EAGVHGLIVPDLPYVAAHSLWS 137 (262)
T ss_dssp HTTCCEEECTTCBTTTHHHHHH
T ss_pred HcCCCEEEEcCCChhhHHHHHH
Confidence 9999998876555445444443
No 276
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=42.55 E-value=1e+02 Score=24.83 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC-----CeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG-----AGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
.+|..||-++...+..++.+...+ -++. ...|+.+.+.. ....||+|+
T Consensus 103 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--------------------------~~~~fD~Ii 156 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN--------------------------VTNTYDVII 156 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH--------------------------CCSCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh--------------------------CCCCceEEE
Confidence 477777777777777766664321 2232 33444333221 145799999
Q ss_pred EecCCCCCCH-----HHHHHHHHH
Q 026988 139 MDCQMGSMDG-----CKATRVIRR 157 (230)
Q Consensus 139 ~D~~mp~~dg-----~~l~~~lr~ 157 (230)
+|...|.... .++++.+++
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~ 180 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYN 180 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHH
T ss_pred EcCCCCCCcchhhhHHHHHHHHHH
Confidence 9986653221 366666654
No 277
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=42.44 E-value=84 Score=25.30 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=38.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc--C---CeEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKL--G---AGVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~--g---~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
.+|..||-++...+..++.+... + -++. ...|+.+.+.. ....||+|+
T Consensus 100 ~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~--------------------------~~~~fD~Ii 153 (275)
T 1iy9_A 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK--------------------------SENQYDVIM 153 (275)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT--------------------------CCSCEEEEE
T ss_pred ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh--------------------------CCCCeeEEE
Confidence 47788888877777777666431 1 1333 34455443221 145799999
Q ss_pred EecCCCCC-----CHHHHHHHHHH
Q 026988 139 MDCQMGSM-----DGCKATRVIRR 157 (230)
Q Consensus 139 ~D~~mp~~-----dg~~l~~~lr~ 157 (230)
+|...|.. ...++++.+++
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~ 177 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred ECCCCCCCcchhhhHHHHHHHHHH
Confidence 99866532 12456666654
No 278
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=42.34 E-value=1.3e+02 Score=25.61 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeEEE--EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC----CC-CCCHHH
Q 026988 78 RIGIRMLKKLGAGVTL--VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ----MG-SMDGCK 150 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~----mp-~~dg~~ 150 (230)
..+.++-+..+..+.+ +.+.+++..+.. ...|.|.+.-+ +. ....++
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~--------------------------~Gad~I~vs~~ggr~~~~~~~~~~ 268 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQ--------------------------HGAAGIIVSNHGARQLDYVPATIM 268 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHH--------------------------TTCSEEEECCGGGTSSTTCCCHHH
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHH--------------------------cCCCEEEECCCCCccCCCcccHHH
Confidence 4455555556665553 456666655443 23666666321 11 123566
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
++..+++. ....+|||...+-.+..+..+++..|++.+..=
T Consensus 269 ~l~~v~~~-----~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 269 ALEEVVKA-----AQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHH-----TTTSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHH-----hCCCCEEEEECCCCCHHHHHHHHHcCCCEEeec
Confidence 67777642 223699999999999999999999999987543
No 279
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=42.24 E-value=1.1e+02 Score=24.13 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCeEEEEcCc
Q 026988 79 IGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 79 ~l~~~L~~~g~~v~~~~~~ 97 (230)
.+.+.+.+.||.+..+...
T Consensus 33 gi~~~a~~~g~~~~~~~~~ 51 (295)
T 3hcw_A 33 GISETCNQHGYGTQTTVSN 51 (295)
T ss_dssp HHHHHHHTTTCEEEECCCC
T ss_pred HHHHHHHHCCCEEEEEcCC
Confidence 3455566667776665433
No 280
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=41.87 E-value=1.5e+02 Score=24.48 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=24.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~ 182 (230)
...||+|++... +.+...+++.+++ .+..+|++......+....
T Consensus 196 ~~~~dav~~~~~--~~~a~~~~~~~~~------~g~~~~~~~~~~~~~~~~~ 239 (392)
T 3lkb_A 196 QAGVEYVVHQNV--AGPVANILKDAKR------LGLKMRHLGAHYTGGPDLI 239 (392)
T ss_dssp HTTCCEEEEESC--HHHHHHHHHHHHH------TTCCCEEEECGGGCSHHHH
T ss_pred hcCCCEEEEecC--cchHHHHHHHHHH------cCCCceEEEecCcccHHHH
Confidence 457999997542 2334455555554 3445677655444444443
No 281
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=41.85 E-value=1.2e+02 Score=23.63 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=36.5
Q ss_pred CccEEEEecCCCCC--------C----HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH---H-----HHHHcCCC-
Q 026988 133 HYDLILMDCQMGSM--------D----GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE---R-----ECFNSGMD- 191 (230)
Q Consensus 133 ~~dlvl~D~~mp~~--------d----g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~---~-----~~~~~G~~- 191 (230)
..-+|++|...++. | |..+++.|.+ . .+-.|.++++....... . .+.+.|..
T Consensus 92 ~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~------~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 164 (292)
T 3k4h_A 92 NFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS------L-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVL 164 (292)
T ss_dssp TCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHH------T-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHH------C-CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCC
Confidence 34467777665432 2 3444555542 2 34567777765444221 1 11223432
Q ss_pred ---eeEeCCCCHHHHHHHHHHHHHh
Q 026988 192 ---TFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 192 ---~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
.+..-..+.+.-...+..++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (292)
T 3k4h_A 165 PKEYILHFDFSRESGQQAVEELMGL 189 (292)
T ss_dssp CGGGEEECCSSHHHHHHHHHHHHTS
T ss_pred ChheEEecCCCHHHHHHHHHHHHcC
Confidence 1233445666666667766654
No 282
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=41.55 E-value=81 Score=23.86 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCC--eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEE
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGA--GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLIL 138 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl 138 (230)
.+.+.+|.+.. .......+...+...|+ ++..+.+..+++..+. ....|+++
T Consensus 145 dL~g~~i~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~-------------------------~g~vDa~~ 198 (259)
T 2v25_A 145 DMKGANIGVAQ-AATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALD-------------------------AKRVDAFS 198 (259)
T ss_dssp GCTTCEEEEET-TCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH-------------------------TTSSSEEE
T ss_pred HhCCCEEEEec-CCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHH-------------------------cCCCcEEE
Confidence 45677877664 44455677778877776 6667888889999887 77899999
Q ss_pred Eec
Q 026988 139 MDC 141 (230)
Q Consensus 139 ~D~ 141 (230)
.|.
T Consensus 199 ~~~ 201 (259)
T 2v25_A 199 VDK 201 (259)
T ss_dssp EEH
T ss_pred ecH
Confidence 874
No 283
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=41.30 E-value=1.2e+02 Score=23.34 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=30.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
.+.++||.+-..-+-..+.+.|.+.|++|..+....+..+.+.
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 46 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFE 46 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4567888888777777888888888988877665555444443
No 284
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=41.27 E-value=1.3e+02 Score=25.73 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=38.5
Q ss_pred CCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|+|.+|....... -++.++++|+.. +.+||++= .-.+.+....+.++|+|....
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~------~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLL------GSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHH------TTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhc------CCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 3588999998664322 256778887632 34677761 124567888899999997775
No 285
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=41.25 E-value=1.4e+02 Score=24.21 Aligned_cols=87 Identities=20% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCcEEEEE-e-ccHHH---HHHHHHHHHhcCCeEEEE------cCcHHHHHHHHHHHHhcccccchhccccCCcccccCC
Q 026988 63 EGLSVLLV-E-DQAVL---QRIGIRMLKKLGAGVTLV------KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNS 131 (230)
Q Consensus 63 ~~~~iLiV-d-d~~~~---~~~l~~~L~~~g~~v~~~------~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (230)
...+|.++ + ++... ...+.+.+++.|..+... .+....+..+. .
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~-------------------------~ 202 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAM-------------------------S 202 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHH-------------------------H
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHH-------------------------h
Confidence 34567666 3 33322 244566777777765422 23344444443 4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~ 182 (230)
..||+|++... +.+...+++.+++ .+..+|++...+.......
T Consensus 203 ~~~d~v~~~~~--~~~a~~~~~~~~~------~g~~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 203 FNPDAIYITGY--YPEIALISRQARQ------LGFTGYILAGDGADAPELI 245 (366)
T ss_dssp TCCSEEEECSC--HHHHHHHHHHHHH------TTCCSEEEECGGGCSTHHH
T ss_pred cCCCEEEEccc--hhHHHHHHHHHHH------cCCCceEEeeCCcCCHHHH
Confidence 56999998432 2234445555554 3445777655554444433
No 286
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=41.11 E-value=50 Score=27.00 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=38.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh----HhHHHHHHcCCCeeEeCCCC--HHHHHHHH
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA----DNERECFNSGMDTFLNKPAQ--EHLLAAAI 207 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~----~~~~~~~~~G~~~~L~KP~~--~~~L~~~l 207 (230)
.|++++-- + |..+++-+.. .+|+|+....... .......+.|. +++..|-+ .++|.++|
T Consensus 255 ad~~v~~s---g--~~~~~EAma~---------G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i 319 (364)
T 1f0k_A 255 ADVVVCRS---G--ALTVSEIAAA---------GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTL 319 (364)
T ss_dssp CSEEEECC---C--HHHHHHHHHH---------TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHH
T ss_pred CCEEEECC---c--hHHHHHHHHh---------CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHH
Confidence 57777642 2 6666666542 4788876433211 11334456676 89999855 89999888
Q ss_pred HHH
Q 026988 208 VET 210 (230)
Q Consensus 208 ~~~ 210 (230)
..+
T Consensus 320 ~~l 322 (364)
T 1f0k_A 320 AGW 322 (364)
T ss_dssp HTC
T ss_pred Hhc
Confidence 755
No 287
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=40.83 E-value=1.3e+02 Score=23.59 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=44.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..+|-++......++.+...|+ ++. ...++.+.+..+... . .....||+|++|
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~--~------------------~~~~~fD~V~~d 163 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD--E------------------KNHGSYDFIFVD 163 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS--G------------------GGTTCBSEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhc--c------------------CCCCCEEEEEEc
Confidence 45899999999888888888888776 344 345555554433200 0 003579999999
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
.... +-..+++.+.
T Consensus 164 ~~~~--~~~~~l~~~~ 177 (247)
T 1sui_A 164 ADKD--NYLNYHKRLI 177 (247)
T ss_dssp SCST--THHHHHHHHH
T ss_pred CchH--HHHHHHHHHH
Confidence 6532 3344555554
No 288
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=40.71 E-value=1.3e+02 Score=24.15 Aligned_cols=41 Identities=5% Similarity=0.147 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.+.++++|+. .++||++=.+-.+.+....++..|+|.++.=
T Consensus 194 ~~~i~~lr~~-------~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEY-------HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHT-------TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhc-------cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5777777752 2578877666666888888899999988764
No 289
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=40.37 E-value=89 Score=25.44 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-----CCC----CHHHHHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-----KPA----QEHLLAAAIVETIA 212 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~----~~~~L~~~l~~~l~ 212 (230)
.++++++|+ ..++||++=.+-.+++...+. .|+|+.+. |++ ...++.+.++..+.
T Consensus 191 ~~~v~~vr~-------~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~~~~~~~fv~~l~~~~~ 254 (271)
T 1ujp_A 191 KDLVRRIKA-------RTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGLQ 254 (271)
T ss_dssp HHHHHHHHT-------TCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHHB
T ss_pred HHHHHHHHh-------hcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccchHHHHHHHHHHHHHHHH
Confidence 467777774 236898888887778888875 89998865 343 34556666665553
No 290
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=40.14 E-value=47 Score=25.30 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCC--CCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 94 VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGS--MDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 94 ~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~--~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+++++.+... ....|+ +++.++- .+|.++++.||+ ..+..|++
T Consensus 9 ~~~~~~~~~~~~~~-----------------------~~~v~~--iev~~~~~~~~g~~~i~~l~~------~~~~~~i~ 57 (207)
T 3ajx_A 9 LLSTEAALELAGKV-----------------------AEYVDI--IELGTPLIKAEGLSVITAVKK------AHPDKIVF 57 (207)
T ss_dssp CSCHHHHHHHHHHH-----------------------GGGCSE--EEECHHHHHHHCTHHHHHHHH------HSTTSEEE
T ss_pred CCCHHHHHHHHHHh-----------------------hccCCE--EEECcHHHHhhCHHHHHHHHH------hCCCCeEE
Q ss_pred EEecCCC-hHh-HHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 172 AFTALVT-ADN-ERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 172 ~ls~~~~-~~~-~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
+-....+ ... ...+.++|++.+..-+....+-...+.+.+..
T Consensus 58 ~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~ 101 (207)
T 3ajx_A 58 ADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQA 101 (207)
T ss_dssp EEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHH
No 291
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.99 E-value=61 Score=25.00 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=37.4
Q ss_pred CccEEEEecCCCCC--------CHHHHHHHHHHhhhhhhcC-CCceEEEEecCCChHhHHHHHHcCCCee
Q 026988 133 HYDLILMDCQMGSM--------DGCKATRVIRRLEAEAETG-QSIPIIAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 133 ~~dlvl~D~~mp~~--------dg~~l~~~lr~~~~~~~~~-~~~pii~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
..|.|.++--.|.. -|++.++.+++ .. .++|++.+-+-. .++..++++.|++++
T Consensus 107 GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~------~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 107 FYDYVFMSPIYDSISKVNYYSTYTAEELREAQK------AKIIDSKVMALGGIN-EDNLLEIKDFGFGGA 169 (210)
T ss_dssp GSSEEEECCCC---------CCCCHHHHHHHHH------TTCSSTTEEEESSCC-TTTHHHHHHTTCSEE
T ss_pred CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHH------hcCCCCCEEEECCCC-HHHHHHHHHhCCCEE
Confidence 47888877654321 26777777764 11 468999887755 778889999999977
No 292
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=39.80 E-value=37 Score=27.25 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=0.0
Q ss_pred cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC--CCCHHHHHHHHHHhhhhhhcCCCceEEE
Q 026988 95 KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG--SMDGCKATRVIRRLEAEAETGQSIPIIA 172 (230)
Q Consensus 95 ~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp--~~dg~~l~~~lr~~~~~~~~~~~~pii~ 172 (230)
....++++.+. ....|+|.+-.... -.+-+++++.+| . .++|+|+
T Consensus 20 ~~t~~~~~~l~-------------------------~~GaD~IelG~S~g~t~~~~~~~v~~ir-------~-~~~Pivl 66 (234)
T 2f6u_A 20 TNTDEIIKAVA-------------------------DSGTDAVMISGTQNVTYEKARTLIEKVS-------Q-YGLPIVV 66 (234)
T ss_dssp CCCHHHHHHHH-------------------------TTTCSEEEECCCTTCCHHHHHHHHHHHT-------T-SCCCEEE
T ss_pred cccHHHHHHHH-------------------------HcCCCEEEECCCCCCCHHHHHHHHHHhc-------C-CCCCEEE
Q ss_pred EecCCChHhHHHHHHcCCCeeEe
Q 026988 173 FTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 173 ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
++...+.- ..|+|++|.
T Consensus 67 ~~y~~n~i------~~gvDg~ii 83 (234)
T 2f6u_A 67 EPSDPSNV------VYDVDYLFV 83 (234)
T ss_dssp CCSSCCCC------CCCSSEEEE
T ss_pred ecCCcchh------hcCCCEEEE
No 293
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=39.73 E-value=1.6e+02 Score=24.23 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=34.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
..|+|.+|-.-| .+-.+..+.++. ..+++ .+..|+.-+.+.+....+.|+|.+.
T Consensus 214 GaD~I~LDn~~~-~~~~~~v~~l~~------~~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 214 KPELILLDNFAV-WQTQTAVQRRDS------RAPTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp CCSEEEEETCCH-HHHHHHHHHHHH------HCTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred CCCEEEECCCCH-HHHHHHHHHhhc------cCCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 579999997432 112223333332 12333 5667777889999999999998653
No 294
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=39.64 E-value=1.8e+02 Score=24.87 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=67.0
Q ss_pred ccCCCcEEEEEe--cc---HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhccccc----chhccccCCcccccC
Q 026988 60 KVLEGLSVLLVE--DQ---AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNH----QIQNLHHGSNLETHN 130 (230)
Q Consensus 60 ~~~~~~~iLiVd--d~---~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ 130 (230)
+...-.+|+||. ++ ......+.++|.+.|+.|.+-.+..+.+..... ..+. .+..+. .... ..
T Consensus 34 w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~-~~ 105 (365)
T 3pfn_A 34 WNKSPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASD-----ESFGAVKKKFCTFR--EDYD-DI 105 (365)
T ss_dssp ESSCCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHC-----STTHHHHHHCEEEC--TTTC-CC
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccc-----cccccccccccccc--cChh-hc
Confidence 334456899996 22 233556778888889988775544443322110 0000 000000 0001 12
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
...+|+||+ -+.|| .+++..+.. ....+||+-+.. |--+||. +++++++...|.++
T Consensus 106 ~~~~DlvI~----lGGDG-T~L~aa~~~-----~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~v 161 (365)
T 3pfn_A 106 SNQIDFIIC----LGGDG-TLLYASSLF-----QGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQV 161 (365)
T ss_dssp TTTCSEEEE----ESSTT-HHHHHHHHC-----SSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHH
T ss_pred ccCCCEEEE----EcChH-HHHHHHHHh-----ccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHH
Confidence 356888876 36677 233333321 234578887653 5556777 68888898999888
Q ss_pred HHhc
Q 026988 211 IARK 214 (230)
Q Consensus 211 l~~~ 214 (230)
+...
T Consensus 162 l~g~ 165 (365)
T 3pfn_A 162 IEGN 165 (365)
T ss_dssp HHSC
T ss_pred HcCC
Confidence 8753
No 295
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=39.49 E-value=67 Score=28.45 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=37.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
-+|+-+|-++.....+++.++..|..+.+. .|+.+..... ...||+|++|.-.
T Consensus 127 g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~--------------------------~~~FD~Il~D~Pc 180 (464)
T 3m6w_A 127 GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF--------------------------GTYFHRVLLDAPC 180 (464)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH--------------------------CSCEEEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc--------------------------cccCCEEEECCCc
Confidence 489999999999999999999988773332 3433322111 4579999999654
No 296
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=39.38 E-value=2.1e+02 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++++..+.+.. ....+|||.--+-.+..++..++..||+....
T Consensus 344 ~~~~l~~v~~~~----~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 344 QLTAVYDCATEA----RKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHH----HTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHH----HhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 355555554321 12358999999989999999999999998754
No 297
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=39.35 E-value=1.3e+02 Score=24.65 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCeEEEEcC
Q 026988 77 QRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~~ 96 (230)
...+.+.+.+.||.+..+..
T Consensus 89 ~~gi~~~a~~~g~~~~~~~~ 108 (355)
T 3e3m_A 89 AQSLTDVLEQGGLQLLLGYT 108 (355)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 34566777788998877653
No 298
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=39.30 E-value=42 Score=29.06 Aligned_cols=25 Identities=8% Similarity=-0.182 Sum_probs=22.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA 89 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~ 89 (230)
.+|+.||-++...+.+++.++..|.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl 102 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNI 102 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999998886
No 299
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.29 E-value=1.4e+02 Score=23.38 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCc---HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHH
Q 026988 77 QRIGIRMLKKLGAGVTLVKDG---EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR 153 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~~~---~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~ 153 (230)
...+.+.+++.||.+..+... +...+.+...+ ...+|.||+--.-+. .-.+.++
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~vdgiI~~~~~~~-~~~~~~~ 83 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFV----------------------HLKVDAIFITTLDDV-YIGSAIE 83 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH----------------------HTTCSEEEEECSCTT-TTHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH----------------------HcCCCEEEEecCChH-HHHHHHH
Confidence 344667788889988876543 22333333322 456888877433222 1124566
Q ss_pred HHHHhhhhhhcCCCceEEEEecC
Q 026988 154 VIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 154 ~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
.+++ ..+|+|++...
T Consensus 84 ~~~~--------~~iPvV~~~~~ 98 (293)
T 3l6u_A 84 EAKK--------AGIPVFAIDRM 98 (293)
T ss_dssp HHHH--------TTCCEEEESSC
T ss_pred HHHH--------cCCCEEEecCC
Confidence 6653 35888888553
No 300
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=39.26 E-value=98 Score=21.76 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=46.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMG 144 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp 144 (230)
++|.++.|.... --+.-.|+++..+.+.+++.+.++...+ . .+.+|++.-.+-
T Consensus 3 mKiaVIGD~Dtv-----~GFrLaGie~~~v~~~ee~~~~~~~l~~---------------------~-digIIlIte~ia 55 (115)
T 3aon_B 3 YKIGVVGDKDSV-----SPFRLFGFDVQHGTTKTEIRKTIDEMAK---------------------N-EYGVIYITEQCA 55 (115)
T ss_dssp EEEEEESCHHHH-----GGGGGGTCEEECCCSHHHHHHHHHHHHH---------------------T-TEEEEEEEHHHH
T ss_pred eEEEEEECHHHH-----HHHHHcCCeEEEeCCHHHHHHHHHHHHh---------------------c-CceEEEEeHHHH
Confidence 588889884332 2233457788788888888888876542 3 788999886654
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEec
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~ 175 (230)
+.-. +.++.++ ....|+|+.-+
T Consensus 56 ~~i~-~~i~~~~--------~~~~P~IveIP 77 (115)
T 3aon_B 56 NLVP-ETIERYK--------GQLTPAIILIP 77 (115)
T ss_dssp TTCH-HHHHHHH--------TSSSCEEEEEC
T ss_pred HHhH-HHHHHHh--------CCCCCEEEEEC
Confidence 4333 2333333 23467776644
No 301
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=39.25 E-value=1.4e+02 Score=23.37 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCCcEEEEEecc-HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 62 LEGLSVLLVEDQ-AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 62 ~~~~~iLiVdd~-~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
+.+.++||.+-. .-+-..+.+.|.+.|++|..+....+.++.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 63 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET 63 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence 566788888874 4355666666777899988776555444443
No 302
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=39.12 E-value=40 Score=27.70 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=49.1
Q ss_pred CCCccEEEEecCCC-C--CC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe----eEeCCCCHH
Q 026988 131 SPHYDLILMDCQMG-S--MD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT----FLNKPAQEH 201 (230)
Q Consensus 131 ~~~~dlvl~D~~mp-~--~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~----~L~KP~~~~ 201 (230)
.-++|.|=+|-.+- + .+ ...+++.|-.+-. ...+ -++..+-.+.+....+.+.|++. |+.||...+
T Consensus 196 ~l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~----~lg~-~vvAEGVEt~~q~~~l~~lG~d~~QGy~~~~P~~~~ 270 (294)
T 2r6o_A 196 QLPFHGLKIDQSFVRKIPAHPSETQIVTTILALAR----GLGM-EVVAEGIETAQQYAFLRDRGCEFGQGNLMSTPQAAD 270 (294)
T ss_dssp HSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHH----HTTC-EEEECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHH
T ss_pred hCCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHH----HCCC-EEEEecCCcHHHHHHHHHcCCCEEEcCccCCCCCHH
Confidence 56899999996442 1 12 2334444433211 1223 44566777888888889999983 589999999
Q ss_pred HHHHHHHHH
Q 026988 202 LLAAAIVET 210 (230)
Q Consensus 202 ~L~~~l~~~ 210 (230)
++...+.+.
T Consensus 271 ~~~~~l~~~ 279 (294)
T 2r6o_A 271 AFASLLDRQ 279 (294)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 988777653
No 303
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=39.09 E-value=1.6e+02 Score=24.06 Aligned_cols=43 Identities=7% Similarity=0.165 Sum_probs=27.4
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+|+|+.......... ...| .+++.. .+.++|.+++.+++..
T Consensus 292 ~G~PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 292 LGVPVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp TTCCEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred cCCCEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 45898876432222222 3445 467774 4999999999988864
No 304
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=39.00 E-value=1.2e+02 Score=22.58 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
+++.+++ ..+++.++|+.........+...|.+.|+....+..+....+.+.
T Consensus 54 ~l~~L~~--------~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~ 105 (189)
T 3mn1_A 54 GIKMLIA--------SGVTTAIISGRKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAE 105 (189)
T ss_dssp HHHHHHH--------TTCEEEEECSSCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHH
T ss_pred HHHHHHH--------CCCEEEEEECcChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHH
Confidence 5666664 347999999988887777788899999987765555444444433
No 305
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=38.89 E-value=1.1e+02 Score=25.39 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=44.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
.++|.+|..- .....++++++++. ....+|+++=-+-.+.+...+.+++|++..+.--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~-----~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKG-----LGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHH-----SCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHh-----cCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 5799999765 33446888888852 1115899988888899999999999999887654
No 306
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=38.66 E-value=68 Score=27.55 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=42.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC---C------eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCc
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG---A------GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g---~------~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (230)
.+|.+||-|+...+..++.+...+ + ++. ...|+.+.++..... ...|
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~-----------------------~~~f 268 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-----------------------GREF 268 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH-----------------------TCCE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc-----------------------CCCc
Confidence 578899988888888888765321 1 233 455666655543111 5679
Q ss_pred cEEEEecCC-CC------CCHHHHHHHH
Q 026988 135 DLILMDCQM-GS------MDGCKATRVI 155 (230)
Q Consensus 135 dlvl~D~~m-p~------~dg~~l~~~l 155 (230)
|+||+|..- |. .-..++.+.+
T Consensus 269 DvII~D~~d~P~~~~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 269 DYVINDLTAVPISTSPEEDSTWEFLRLI 296 (364)
T ss_dssp EEEEEECCSSCCCCC----CHHHHHHHH
T ss_pred eEEEECCCCcccCcCchhhhHHHHHHHH
Confidence 999999865 42 2345666665
No 307
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=38.63 E-value=90 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=43.0
Q ss_pred CccEEEEecCC----CCC-CHHHHHHHHHHhhhhhhcCCCceEEE-EecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHH
Q 026988 133 HYDLILMDCQM----GSM-DGCKATRVIRRLEAEAETGQSIPIIA-FTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206 (230)
Q Consensus 133 ~~dlvl~D~~m----p~~-dg~~l~~~lr~~~~~~~~~~~~pii~-ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~ 206 (230)
..|.+=+|++- |.. -|..+++.||+. .++.|+.+ +--......+..+.++|++.+..-......+.+.
T Consensus 53 G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~------~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~ 126 (246)
T 3inp_A 53 GADNIHFDVMDNHYVPNLTFGPMVLKALRDY------GITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRS 126 (246)
T ss_dssp TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHH------TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHH
T ss_pred CCCEEEEEecCCCcCcchhcCHHHHHHHHHh------CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHH
Confidence 35555555532 433 388999999863 22355554 3333345567888899999776665444455555
Q ss_pred HHHH
Q 026988 207 IVET 210 (230)
Q Consensus 207 l~~~ 210 (230)
++.+
T Consensus 127 i~~i 130 (246)
T 3inp_A 127 LQLI 130 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 308
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=38.51 E-value=43 Score=28.43 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEE--EEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHHHHHhc
Q 026988 148 GCKATRVIRRLEAEAETGQSIPII--AFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii--~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~l~~~l~~~ 214 (230)
++++++.+++ ...+||| ...+-.++++....++.|+++++. |--++......+...+...
T Consensus 228 ~lell~~i~~-------~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~ 294 (330)
T 2yzr_A 228 LYEVLLEVKK-------LGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNY 294 (330)
T ss_dssp HHHHHHHHHH-------HTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHH-------hCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 4577777764 1357885 455555789999999999999864 4456777777777766644
No 309
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=38.18 E-value=34 Score=28.00 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHh--cCCeEEEEc-CcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKK--LGAGVTLVK-DGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~--~g~~v~~~~-~~~~al~~l~ 105 (230)
...|+||++..+..+.....++-.. .+++|.+.. +..+.++.+.
T Consensus 28 ~~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~ 74 (260)
T 1zgh_A 28 AGLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVK 74 (260)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHHH
T ss_pred cCceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHH
Confidence 3458999999877776665554332 467776654 3334556665
No 310
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=38.17 E-value=74 Score=27.51 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=36.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcC------C---eE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCc
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLG------A---GV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g------~---~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (230)
.+|-+||=|+...+..++.|.... . ++ ....|+.+.++..... ...|
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-----------------------~~~y 285 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-----------------------GREF 285 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH-----------------------TCCE
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc-----------------------cCce
Confidence 478888888888888777763210 1 13 3456666665544321 5679
Q ss_pred cEEEEecCCC
Q 026988 135 DLILMDCQMG 144 (230)
Q Consensus 135 dlvl~D~~mp 144 (230)
|+||+|+.-+
T Consensus 286 DvIIvDl~D~ 295 (381)
T 3c6k_A 286 DYVINDLTAV 295 (381)
T ss_dssp EEEEEECCSS
T ss_pred eEEEECCCCC
Confidence 9999998653
No 311
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=38.14 E-value=1.4e+02 Score=23.27 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAK 47 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45668888888877778888888888998887765555554443
No 312
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=37.97 E-value=1.1e+02 Score=25.49 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 150 KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 150 ~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
+.++..|+. .+..||.+-.. +.+...+++++|+|-.+...++++++.+++..+
T Consensus 196 ~Av~~ar~~------~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKN------LKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHH------SSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHh------CCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 456666652 24567777664 357788899999999999999999999988754
No 313
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=37.84 E-value=1.2e+02 Score=22.45 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=39.1
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+++.+|-++...... ..|...+..+..+.+..+++.++. ....|+++.|
T Consensus 113 dL~g~~v~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~l~-------------------------~g~vDa~~~~ 162 (233)
T 1ii5_A 113 DLKNKEVAVVRDTTAV-----DWANFYQADVRETNNLTAAITLLQ-------------------------KKQVEAVMFD 162 (233)
T ss_dssp GGTTCEEEEETTSHHH-----HHHHHTTCEEEEESSHHHHHHHHH-------------------------TTSCSEEEEE
T ss_pred HhCCCeEEEECCccHH-----HHHHHcCCCeEEcCCHHHHHHHHH-------------------------cCCccEEEeC
Confidence 4667888888776543 234444788889999999999997 7789999998
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 163 ~ 163 (233)
T 1ii5_A 163 R 163 (233)
T ss_dssp H
T ss_pred H
Confidence 4
No 314
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=37.80 E-value=1.8e+02 Score=24.22 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=44.0
Q ss_pred EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEE
Q 026988 92 TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPII 171 (230)
Q Consensus 92 ~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii 171 (230)
..+.+.+++.+.+. ..+|+|.+|-. +--++-+.++.. ..+ ..+
T Consensus 214 VEvdtlde~~eAl~--------------------------aGaD~I~LDn~----~~~~l~~av~~i------~~~-v~i 256 (298)
T 3gnn_A 214 IEVETLDQLRTALA--------------------------HGARSVLLDNF----TLDMMRDAVRVT------EGR-AVL 256 (298)
T ss_dssp EEESSHHHHHHHHH--------------------------TTCEEEEEESC----CHHHHHHHHHHH------TTS-EEE
T ss_pred EEeCCHHHHHHHHH--------------------------cCCCEEEECCC----CHHHHHHHHHHh------CCC-CeE
Confidence 45888888877775 24899999963 333333333322 122 456
Q ss_pred EEecCCChHhHHHHHHcCCCee
Q 026988 172 AFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 172 ~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
..|+.-+.+.+....+.|+|.+
T Consensus 257 eaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 257 EVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEcCCCHHHHHHHHHcCCCEE
Confidence 6788888999999999999854
No 315
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=37.79 E-value=1.1e+02 Score=25.43 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=28.6
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCC--CHHHHHHHHHHHHHhccCc
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPA--QEHLLAAAIVETIARKSHK 217 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~--~~~~L~~~l~~~l~~~~~~ 217 (230)
..+|+|++....+..........+-.+++..+- +.+.|.++|.+++.....+
T Consensus 319 ~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 372 (398)
T 4fzr_A 319 EGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYV 372 (398)
T ss_dssp TTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHH
T ss_pred hCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 358888875433333333334333445666553 7888999999998754443
No 316
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=37.55 E-value=1.3e+02 Score=22.58 Aligned_cols=64 Identities=22% Similarity=0.367 Sum_probs=40.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..||-++......++.+...|. ++.. ..+..+.+..+ .. ||+|++|
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--------------------------~~-fD~v~~~ 133 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ--------------------------RD-IDILFMD 133 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC--------------------------CS-EEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC--------------------------CC-CCEEEEc
Confidence 35889999999988888888877765 3443 33443322111 24 9999999
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
... .+-..+++.+.
T Consensus 134 ~~~--~~~~~~l~~~~ 147 (210)
T 3c3p_A 134 CDV--FNGADVLERMN 147 (210)
T ss_dssp TTT--SCHHHHHHHHG
T ss_pred CCh--hhhHHHHHHHH
Confidence 543 34445566554
No 317
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.29 E-value=1.5e+02 Score=23.33 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCeEEEEcCc-----HHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHH
Q 026988 77 QRIGIRMLKKLGAGVTLVKDG-----EAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKA 151 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~~~-----~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l 151 (230)
...+.+.+++.||.+..+... +...+.+...+ ...+|.||+--..+.. -...
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~----------------------~~~vdgiii~~~~~~~-~~~~ 78 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESAL----------------------ATYPSGIATTIPSDTA-FSKS 78 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHH----------------------HTCCSEEEECCCCSST-THHH
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHH----------------------HcCCCEEEEeCCCHHH-HHHH
Confidence 344667778889998877632 33334443332 3468988874322221 1345
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecC
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTAL 176 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~ 176 (230)
++.+++ ..+|+|++...
T Consensus 79 ~~~~~~--------~giPvV~~~~~ 95 (297)
T 3rot_A 79 LQRANK--------LNIPVIAVDTR 95 (297)
T ss_dssp HHHHHH--------HTCCEEEESCC
T ss_pred HHHHHH--------CCCCEEEEcCC
Confidence 555553 24888888543
No 318
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=37.24 E-value=1.4e+02 Score=23.06 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=44.4
Q ss_pred Ccc-EEEEecCCCCC---CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc---CCCeeEe------CCCC
Q 026988 133 HYD-LILMDCQMGSM---DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS---GMDTFLN------KPAQ 199 (230)
Q Consensus 133 ~~d-lvl~D~~mp~~---dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~---G~~~~L~------KP~~ 199 (230)
.++ +++.+..-.+. -.+++++++++ ...+|||...+-.+.++...+++. |++.++. .|..
T Consensus 162 G~~~i~~~~~~~~~~~~g~~~~~~~~l~~-------~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~ 234 (244)
T 2y88_A 162 GCSRFVVTDITKDGTLGGPNLDLLAGVAD-------RTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFT 234 (244)
T ss_dssp TCCCEEEEETTTTTTTSCCCHHHHHHHHT-------TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSC
T ss_pred CCCEEEEEecCCccccCCCCHHHHHHHHH-------hCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcC
Confidence 355 44566553322 24677887774 246899999888888999999988 9997643 4555
Q ss_pred HHHHHH
Q 026988 200 EHLLAA 205 (230)
Q Consensus 200 ~~~L~~ 205 (230)
..++.+
T Consensus 235 ~~~~~~ 240 (244)
T 2y88_A 235 LPQALA 240 (244)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 319
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=37.10 E-value=1.6e+02 Score=23.66 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=34.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+..|||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 72 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAV 72 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45678999999888888888999899999887765555554443
No 320
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=37.08 E-value=93 Score=27.43 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=37.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe-EEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG-VTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
-+|+-+|-++.....+.+.++..|.. +.+. .|+.+..... ...||+||+|.-
T Consensus 131 g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~--------------------------~~~FD~Il~DaP 184 (456)
T 3m4x_A 131 GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF--------------------------SGFFDRIVVDAP 184 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH--------------------------TTCEEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc--------------------------cccCCEEEECCC
Confidence 47899999999999999999988874 4433 3444332222 457999999965
No 321
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=36.82 E-value=1.3e+02 Score=25.07 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=33.8
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe---EE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG---VT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~---v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+|.-||-++......++.++..|.. +. ...|..+.+..+... ...||+|++|
T Consensus 176 a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~-----------------------~~~fD~Ii~d 232 (332)
T 2igt_A 176 AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR-----------------------GSTYDIILTD 232 (332)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH-----------------------TCCBSEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc-----------------------CCCceEEEEC
Confidence 37888888888888877777766642 33 334544443322110 4579999998
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 233 P 233 (332)
T 2igt_A 233 P 233 (332)
T ss_dssp C
T ss_pred C
Confidence 5
No 322
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=36.81 E-value=66 Score=27.35 Aligned_cols=131 Identities=11% Similarity=0.165 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCC-----eEEEE-----cCcHHHHHHHHHHHHhcccccchhccccC-CcccccCCCCccEEEEecC
Q 026988 74 AVLQRIGIRMLKKLGA-----GVTLV-----KDGEAAVEAMTLMINAAGKNHQIQNLHHG-SNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 74 ~~~~~~l~~~L~~~g~-----~v~~~-----~~~~~al~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dlvl~D~~ 142 (230)
+.+...+.+.+...+. .+... .+...+.+.+... ..+|-.--++.|++| .++.....-++|.|=+|-.
T Consensus 242 ~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~l-~~~G~~ialDDfG~g~ssl~~L~~l~~d~iKiD~~ 320 (400)
T 3sy8_A 242 RALAENISALLTEFHLPPSSVMFEITETGLISAPASSLENLVRL-WIMGCGLAMDDFGAGYSSLDRLCEFPFSQIKLDRT 320 (400)
T ss_dssp TTHHHHHHHHHHHTTCCGGGEEEEEEHHHHHTCCHHHHHHHHHH-HHHTCEEEEEEECSCSGGGGSSSSCCCSEEEECTH
T ss_pred cHHHHHHHHHHHHcCCChHHeEEEecCCchhcCHHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHHhCCCCEEEECHH
Confidence 3445667777776653 12222 2334444444432 223333344455444 3466666778999999965
Q ss_pred CC-----CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCHHHHHHHHHHH
Q 026988 143 MG-----SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 143 mp-----~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~~~L~~~l~~~ 210 (230)
+- +.....+++.+-.+-.. ..+ -++..+-.+.+....+.+.|++ .|+.||...+++...+...
T Consensus 321 ~v~~~~~~~~~~~~v~~i~~~a~~----l~~-~vvaEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~~ 392 (400)
T 3sy8_A 321 FVQKMKTQPRSCAVISSVVALAQA----LGI-SLVVEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSGS 392 (400)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHH----HTC-EEEECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHHC
T ss_pred HHhhhhcChhHHHHHHHHHHHHHH----cCC-eEEEecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHHHHHHHhc
Confidence 32 22344445544332111 122 4555677778888888899998 3588999999998776643
No 323
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=36.79 E-value=1.1e+02 Score=27.20 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=39.9
Q ss_pred CCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 132 PHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..+|+|.+|...+... -.+.++++++ ..+.+||++- .-.+.+....+.++|++.+..
T Consensus 240 aG~d~I~id~a~g~~~~~~~~v~~i~~------~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 240 AGVDVVVVDTAHGHSKGVIERVRWVKQ------TFPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp TTCSEEEEECSCCSBHHHHHHHHHHHH------HCTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred cccceEEecccCCcchhHHHHHHHHHH------HCCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 3589999998876532 3567777775 2345777763 234567788899999997765
No 324
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=36.67 E-value=1.5e+02 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=30.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEE-cCcHHHHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV-KDGEAAVEAMT 105 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~ 105 (230)
+..|||.+-..-+-..+.+.|.+.|++|... ....+..+.+.
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~ 68 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVV 68 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHH
Confidence 4578888888888888888888899998665 44445444443
No 325
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=36.55 E-value=1.1e+02 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=16.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLK 85 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~ 85 (230)
+.+|..||-++.....++..++
T Consensus 110 g~~V~~vE~~~~~~~l~~~~l~ 131 (258)
T 2oyr_A 110 GCRVRMLERNPVVAALLDDGLA 131 (258)
T ss_dssp TCCEEEEECCHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHH
Confidence 4478999999987777766664
No 326
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=36.54 E-value=1.2e+02 Score=23.36 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=27.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe--EE-EEcCcHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG--VT-LVKDGEAAVE 102 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~ 102 (230)
+.+|..||-++......++.+...|+. +. ...|..+.+.
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 458999999999999999988887752 43 3445554443
No 327
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=36.51 E-value=64 Score=24.38 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=38.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC---eEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCC-ccEEEE
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA---GVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH-YDLILM 139 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~---~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlvl~ 139 (230)
.+|.-||-++......++.+...|. ++... .|..+. +. ...... ||+|++
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~---~~----------------------~~~~~~~fD~I~~ 131 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF---LK----------------------QPQNQPHFDVVFL 131 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH---TT----------------------SCCSSCCEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH---HH----------------------hhccCCCCCEEEE
Confidence 3677888888777777777776664 34333 233221 11 001346 999999
Q ss_pred ecCCCCCCHHHHHHHHH
Q 026988 140 DCQMGSMDGCKATRVIR 156 (230)
Q Consensus 140 D~~mp~~dg~~l~~~lr 156 (230)
|......+..++++.+.
T Consensus 132 ~~~~~~~~~~~~l~~~~ 148 (201)
T 2ift_A 132 DPPFHFNLAEQAISLLC 148 (201)
T ss_dssp CCCSSSCHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHH
Confidence 86643333445566664
No 328
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=36.30 E-value=1.6e+02 Score=23.44 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=33.4
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
.+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 72 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVV 72 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35677999999988888888899989999988765444444433
No 329
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=36.21 E-value=1.2e+02 Score=21.65 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=58.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc-HHHHHHHHHHHHhcccccchhccccC--CcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG-EAAVEAMTLMINAAGKNHQIQNLHHG--SNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~-~~al~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dlvl~D 140 (230)
+.+|+|++-...- ..+.+.|...|+.|..+..- .+..+.+.... .....+...+.. ..+....-...|+|++-
T Consensus 3 ~~~vlI~G~G~vG-~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 3 KDHFIVCGHSILA-INTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CSCEEEECCSHHH-HHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CCcEEEECCCHHH-HHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 3478888876665 44555556678888777653 44333333211 111111111111 11222224467888876
Q ss_pred cCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 141 CQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
..-.. .-..++...|++ .+..+|++.... ..........|++..+
T Consensus 79 ~~~d~-~n~~~~~~a~~~------~~~~~ii~~~~~--~~~~~~l~~~G~~~vi 123 (153)
T 1id1_A 79 SDNDA-DNAFVVLSAKDM------SSDVKTVLAVSD--SKNLNKIKMVHPDIIL 123 (153)
T ss_dssp SSCHH-HHHHHHHHHHHH------TSSSCEEEECSS--GGGHHHHHTTCCSEEE
T ss_pred cCChH-HHHHHHHHHHHH------CCCCEEEEEECC--HHHHHHHHHcCCCEEE
Confidence 54221 123334445542 244667766543 3444556778998554
No 330
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=36.04 E-value=12 Score=34.02 Aligned_cols=28 Identities=4% Similarity=-0.067 Sum_probs=23.9
Q ss_pred CccchhhhhhcCCC-ceeEEccccee-eee
Q 026988 1 MSIGKEQAETTSHP-EKLELEHGLQL-EFK 28 (230)
Q Consensus 1 L~I~~~~~~~~g~~-~~~~~~~g~g~-~f~ 28 (230)
|+|++.+++.|||. ++++|..+.|+ .|.
T Consensus 112 Lsiv~~l~~~~gG~~I~V~S~~~~g~~~~~ 141 (530)
T 2zbk_B 112 VKAAVLYSQMHQDKPIEIETSPVNSKRIYT 141 (530)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEE
T ss_pred HHHHHHHHHHhCCCceEEEEecCCCeEEEE
Confidence 57899999999999 99999988775 444
No 331
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=35.78 E-value=1.5e+02 Score=22.86 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVA 50 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 45668999998888888888888889999887765555555443
No 332
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=35.77 E-value=1.2e+02 Score=23.58 Aligned_cols=34 Identities=12% Similarity=-0.070 Sum_probs=26.7
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~ 95 (230)
.++.+|||.+-..-+-..+.+.|.+.|++|....
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~ 44 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGC 44 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4567889999888888888888888999887654
No 333
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=35.57 E-value=1e+02 Score=21.01 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=34.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCe-EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAG-VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
|+|.++.|.... . -+.-.|+. +..+.+.+++.+.++...+ ...+.+|++.-.+
T Consensus 1 MkiaVIGD~dtv-~----GFrLaGi~~v~~v~~~ee~~~~~~~l~~---------------------~~digIIlite~~ 54 (101)
T 2ov6_A 1 MELAVIGKSEFV-T----GFRLAGISKVYETPDIPATESAVRSVLE---------------------DKSVGILVMHNDD 54 (101)
T ss_dssp CCEEEEECHHHH-H----HHHHHTCCEEEECCSTTTHHHHHHHHHH---------------------HTSSSEEEEEHHH
T ss_pred CEEEEEECHHHH-H----HHHHcCCCceEecCCHHHHHHHHHHHhh---------------------CCCeEEEEEcHHH
Confidence 477888883322 1 22234666 6667888888887776543 3468899998654
No 334
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=35.35 E-value=1.7e+02 Score=23.22 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=33.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
.+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~ 66 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQT 66 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35677899999888888888888888999988776555544443
No 335
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=35.23 E-value=1.5e+02 Score=22.74 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=43.2
Q ss_pred ccEEE-EecCCCCC---CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe------CCCCHHHH
Q 026988 134 YDLIL-MDCQMGSM---DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN------KPAQEHLL 203 (230)
Q Consensus 134 ~dlvl-~D~~mp~~---dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~------KP~~~~~L 203 (230)
.|.|+ .+..-.+. -.++.++.+++. .++||++..+-.+.++...+++.|++.++. .+.+.+++
T Consensus 168 ~d~i~~~~~~~~g~~~~~~~~~i~~l~~~-------~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 168 AGEILLTSIDRDGTGLGYDVELIRRVADS-------VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp CSEEEEEETTTTTTCSCCCHHHHHHHHHH-------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHH
T ss_pred CCEEEEecccCCCCcCcCCHHHHHHHHHh-------cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHH
Confidence 56554 44442211 146777777742 368999988877778888899999998753 34555555
Q ss_pred HHHH
Q 026988 204 AAAI 207 (230)
Q Consensus 204 ~~~l 207 (230)
.+.+
T Consensus 241 ~~~l 244 (253)
T 1h5y_A 241 KRYL 244 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 336
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=35.19 E-value=60 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=16.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRR 157 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~ 157 (230)
..||+|+++..+. +-.++++.+.+
T Consensus 107 ~~~D~i~~~~~~~--~~~~~l~~~~~ 130 (204)
T 3e05_A 107 PDPDRVFIGGSGG--MLEEIIDAVDR 130 (204)
T ss_dssp CCCSEEEESCCTT--CHHHHHHHHHH
T ss_pred CCCCEEEECCCCc--CHHHHHHHHHH
Confidence 5699999997665 44556666654
No 337
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=35.08 E-value=1.3e+02 Score=22.28 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHH
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~ 209 (230)
+++.+++ ..++++++|+.............|.+.|+....+..+....+.+
T Consensus 61 ~l~~L~~--------~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk~~~~~~~~~ 111 (188)
T 2r8e_A 61 GIRCALT--------SDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLE 111 (188)
T ss_dssp HHHHHHT--------TTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCSHHHHHHHHH
T ss_pred HHHHHHH--------CCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCCHHHHHHHHH
Confidence 5666663 34789999998877766667778999887655444444444433
No 338
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=34.75 E-value=2e+02 Score=24.01 Aligned_cols=44 Identities=5% Similarity=0.095 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEe--cCCChHhHHHHHHcCCCeeE
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFT--ALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls--~~~~~~~~~~~~~~G~~~~L 194 (230)
..+-+++++.+++ ..+.+++.+++ +......+..+.++|++.+.
T Consensus 66 ~~~~~e~l~~i~~------~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~ 111 (345)
T 1nvm_A 66 RHTDLEYIEAVAG------EISHAQIATLLLPGIGSVHDLKNAYQAGARVVR 111 (345)
T ss_dssp SSCHHHHHHHHHT------TCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHh------hCCCCEEEEEecCCcccHHHHHHHHhCCcCEEE
Confidence 3456777766664 23456777664 33456677777777777653
No 339
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=34.68 E-value=58 Score=27.79 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE------eC-CCCHHHHHHHHHHHHHhccC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL------NK-PAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L------~K-P~~~~~L~~~l~~~l~~~~~ 216 (230)
++.+..+++ ....+|||...+-.+.++..+++.+|++.+. .. |.-..++.+.+...+.....
T Consensus 265 ~~~i~~v~~------~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~G~ 333 (354)
T 4ef8_A 265 LANINAFYR------RCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRY 333 (354)
T ss_dssp HHHHHHHHH------HCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH------hCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHcCC
Confidence 566666764 2346999999999999999999999998663 34 66667777777777665443
No 340
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.56 E-value=79 Score=24.87 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=41.8
Q ss_pred CccEEEEec---CC-CCC-CHHHHHHHHHHhhhhhhcCCCceEE--EEecCCChHhHHHHHHcCCCeeEeCCC--CHHHH
Q 026988 133 HYDLILMDC---QM-GSM-DGCKATRVIRRLEAEAETGQSIPII--AFTALVTADNERECFNSGMDTFLNKPA--QEHLL 203 (230)
Q Consensus 133 ~~dlvl~D~---~m-p~~-dg~~l~~~lr~~~~~~~~~~~~pii--~ls~~~~~~~~~~~~~~G~~~~L~KP~--~~~~L 203 (230)
..|++=+|+ .. |.. .|.++++.+|+. .+.|+. +++. +.......+.++|++.+..-.. ..+..
T Consensus 30 Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~-------~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e~~~~~~~ 101 (230)
T 1tqj_A 30 GADWIHVDVMDGRFVPNITIGPLIVDAIRPL-------TKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEHNASPHL 101 (230)
T ss_dssp TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG-------CCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECSTTTCTTH
T ss_pred CCCEEEEEEEecCCCcchhhhHHHHHHHHhh-------cCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcccccchhH
Confidence 355555554 21 222 367888888852 134554 6664 3345678899999998866554 33444
Q ss_pred HHHHHHHH
Q 026988 204 AAAIVETI 211 (230)
Q Consensus 204 ~~~l~~~l 211 (230)
.+.++.+.
T Consensus 102 ~~~~~~i~ 109 (230)
T 1tqj_A 102 HRTLCQIR 109 (230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 341
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=34.23 E-value=1.7e+02 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+..+||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 52 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVA 52 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHH
Confidence 56678999998888888888888889999887765555544443
No 342
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=34.10 E-value=1.7e+02 Score=22.97 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC-cHHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD-GEAAVEAMTL 106 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~-~~~al~~l~~ 106 (230)
+.+.+|||.+-..-+-..+.+.|.+.|++|..+.. ..+..+.+..
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 72 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKN 72 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 45668999998888888888888889998876654 5555555443
No 343
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=33.87 E-value=65 Score=28.06 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=29.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc--CC-eEE-EEcCcHHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL--GA-GVT-LVKDGEAAVEA 103 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~--g~-~v~-~~~~~~~al~~ 103 (230)
+.+|.-||-++......+..++.. |. ++. ...|..+.+..
T Consensus 115 g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~ 158 (410)
T 3ll7_A 115 ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL 158 (410)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH
T ss_pred CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh
Confidence 458999999999999999888877 65 443 44566554443
No 344
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=33.85 E-value=1.7e+02 Score=22.94 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCeEEEEcC--cHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHH
Q 026988 77 QRIGIRMLKKLGAGVTLVKD--GEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRV 154 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~~--~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~ 154 (230)
...+.+.+++.||.+..+.. .+...+.+...+ ...+|.||+.-.-+. .....++.
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~----------------------~~~vdgiii~~~~~~-~~~~~~~~ 77 (306)
T 8abp_A 21 WKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLA----------------------ASGAKGFVICTPDPK-LGSAIVAK 77 (306)
T ss_dssp HHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHH----------------------HTTCCEEEEECSCGG-GHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHH----------------------HcCCCEEEEeCCCch-hhHHHHHH
Confidence 34466777888998876654 333334444332 345898887543221 12234555
Q ss_pred HHHhhhhhhcCCCceEEEEec
Q 026988 155 IRRLEAEAETGQSIPIIAFTA 175 (230)
Q Consensus 155 lr~~~~~~~~~~~~pii~ls~ 175 (230)
+++ ..+|+|++..
T Consensus 78 ~~~--------~~iPvV~~~~ 90 (306)
T 8abp_A 78 ARG--------YDMKVIAVDD 90 (306)
T ss_dssp HHH--------TTCEEEEESS
T ss_pred HHH--------CCCcEEEeCC
Confidence 543 3589998863
No 345
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=33.84 E-value=2e+02 Score=23.98 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=44.0
Q ss_pred cEEEEEe-ccH---HHHHHHHHHHHhcCCeEEEE-------cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCC
Q 026988 65 LSVLLVE-DQA---VLQRIGIRMLKKLGAGVTLV-------KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133 (230)
Q Consensus 65 ~~iLiVd-d~~---~~~~~l~~~L~~~g~~v~~~-------~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (230)
.+|.++. |+. .....+++.+++.|..+... .|....+..+. ...
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~-------------------------~~~ 219 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLR-------------------------ADP 219 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHH-------------------------HSC
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHH-------------------------hcC
Confidence 5666554 333 24455667777788776532 24445555554 457
Q ss_pred ccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh
Q 026988 134 YDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADN 181 (230)
Q Consensus 134 ~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~ 181 (230)
+|+|++....+ .+...+++.+++ .+...+++...+..+.+.
T Consensus 220 ~d~v~~~~~~~-~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~ 260 (419)
T 3h5l_A 220 PAVIVVTHFYP-QDQALFMNQFMT------DPTNSLVYLQYGASLAAF 260 (419)
T ss_dssp CSEEEECCCCH-HHHHHHHHHHTT------SCCSCEEEECSGGGSHHH
T ss_pred CCEEEEccccC-chHHHHHHHHHH------cCCCceEEecCCCCcHHH
Confidence 99999863221 123445555543 223445544444444443
No 346
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.76 E-value=1.4e+02 Score=21.86 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=63.3
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHHHHHHHhcccccchhccccC--Cccccc-CCCCccEE
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKL-GAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG--SNLETH-NSPHYDLI 137 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~dlv 137 (230)
..+.+|+|++-...- ..+.+.|... |+.|..++.-.+..+.+... + ......+.. +.+... .-..+|+|
T Consensus 37 ~~~~~v~IiG~G~~G-~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----g--~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 37 PGHAQVLILGMGRIG-TGAYDELRARYGKISLGIEIREEAAQQHRSE----G--RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp CTTCSEEEECCSHHH-HHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----T--CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCCCcEEEECCCHHH-HHHHHHHHhccCCeEEEEECCHHHHHHHHHC----C--CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 345689999987766 4555566667 89998887766665554421 1 111111111 112222 23468888
Q ss_pred EEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 138 LMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 138 l~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
++-. |+.. -..++..++. .++...|++.+. +........+.|++..+.
T Consensus 110 i~~~--~~~~~~~~~~~~~~~------~~~~~~ii~~~~--~~~~~~~l~~~G~~~vi~ 158 (183)
T 3c85_A 110 LLAM--PHHQGNQTALEQLQR------RNYKGQIAAIAE--YPDQLEGLLESGVDAAFN 158 (183)
T ss_dssp EECC--SSHHHHHHHHHHHHH------TTCCSEEEEEES--SHHHHHHHHHHTCSEEEE
T ss_pred EEeC--CChHHHHHHHHHHHH------HCCCCEEEEEEC--CHHHHHHHHHcCCCEEEc
Confidence 8743 2211 1233444553 234566766654 345556667789885544
No 347
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=33.75 E-value=1.7e+02 Score=22.83 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 53 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVA 53 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45678899998888888888888888999887765555444443
No 348
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=33.73 E-value=1.6e+02 Score=22.48 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
++++++.+++ . ..+||++..+-.+.++...+++.|++.++.=
T Consensus 163 ~~~~~~~~~~---~----~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 163 DFQFLKDVLQ---S----VDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHHH---H----CCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHh---h----CCCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 3556666664 1 2589999988879999999999999988653
No 349
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=33.57 E-value=1.4e+02 Score=23.41 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 026988 196 KPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 196 KP~~~~~L~~~l~~~l~~ 213 (230)
-.++.+.-...+..++..
T Consensus 169 ~~~~~~~~~~~~~~~l~~ 186 (290)
T 2rgy_A 169 SDFSPEGGYAATCQLLES 186 (290)
T ss_dssp CCSSHHHHHHHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHhC
Confidence 345566556666666654
No 350
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=33.44 E-value=1.7e+02 Score=22.81 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.+|||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVE 70 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45668999998888888888888888999887665555444443
No 351
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=33.35 E-value=2e+02 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=27.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
.++|||+|++- -..-..+.+.|.+ .+++.++.-..+.++.+
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~ 54 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKV 54 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence 46689999998 4445666777765 47888776655555554
No 352
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.34 E-value=1.7e+02 Score=23.14 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=10.1
Q ss_pred EeCCCCHHHHHHHHHHH
Q 026988 194 LNKPAQEHLLAAAIVET 210 (230)
Q Consensus 194 L~KP~~~~~L~~~l~~~ 210 (230)
..-.++.+.-...+..+
T Consensus 170 ~~~~~~~~~~~~~~~~l 186 (303)
T 3kke_A 170 VDAGWEADAGSAALNTL 186 (303)
T ss_dssp EECCSSHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHh
Confidence 33455666666666666
No 353
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.32 E-value=1.6e+02 Score=22.45 Aligned_cols=134 Identities=8% Similarity=0.054 Sum_probs=73.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHHHHHHhcccccchhc-cccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMTLMINAAGKNHQIQN-LHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+|+++-..+.+.....+++...+.++. ...+.++++...+.. + . ..+.+.. +..+..+.. .+++=++++
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~-~-~-~~dVIISRGgta~~lr~----~~~iPVV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL-Q-D-EVDAIISRGATSDYIKK----SVSIPSISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH-T-T-TCSEEEEEHHHHHHHHT----TCSSCEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh-c-C-CCeEEEECChHHHHHHH----hCCCCEEEE
Confidence 35899999999998999998887776655 445777788877654 2 1 1122222 222222221 133445555
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCCh---HhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHhc
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTA---DNERECFNSGMDTFLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~---~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
. .+|+++++.|...+. ... +|-+++-.... ......+.....-|.. .+.+++...+..+....
T Consensus 77 ~---~s~~Dil~al~~a~~---~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~--~~~~e~~~~i~~l~~~G 142 (196)
T 2q5c_A 77 K---VTRFDTMRAVYNAKR---FGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLF--SSEDEITTLISKVKTEN 142 (196)
T ss_dssp C---CCHHHHHHHHHHHGG---GCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEE--CSGGGHHHHHHHHHHTT
T ss_pred c---CCHhHHHHHHHHHHh---hCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHHHHCC
Confidence 5 457777777765432 223 44444433322 3344444443333333 45677777777666543
No 354
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=33.28 E-value=1.6e+02 Score=22.53 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=37.9
Q ss_pred CccEEEEecCCCCC-------C----HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHh---HHHHH-----HcCCCe-
Q 026988 133 HYDLILMDCQMGSM-------D----GCKATRVIRRLEAEAETGQSIPIIAFTALVTADN---ERECF-----NSGMDT- 192 (230)
Q Consensus 133 ~~dlvl~D~~mp~~-------d----g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~---~~~~~-----~~G~~~- 192 (230)
..-+|++|...++. | |..+++.|.+ ..+-.|.++++...... ...++ +.|...
T Consensus 82 ~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~-------~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 154 (272)
T 3o74_A 82 GLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLS-------SAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVR 154 (272)
T ss_dssp TCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHT-------TCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEE
T ss_pred CCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHH-------CCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChh
Confidence 34477777665542 2 3445555543 23456777776543322 12222 223221
Q ss_pred -eEeCCCCHHHHHHHHHHHHHhc
Q 026988 193 -FLNKPAQEHLLAAAIVETIARK 214 (230)
Q Consensus 193 -~L~KP~~~~~L~~~l~~~l~~~ 214 (230)
+..-..+.+.-...+.+++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~ 177 (272)
T 3o74_A 155 RYQGEAFSRECGQRLMQQLIDDL 177 (272)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHhcC
Confidence 1223466777777777777654
No 355
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=33.24 E-value=2.2e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.++++..+.+.... ..+|||.--+-.+..++..++.+|++...
T Consensus 192 ~~~~i~~v~~~~~~----~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 192 QITAIEKCSSVASK----FGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp HHHHHHHHHHHHHH----HTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHHhh----cCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 45556666432211 24899988888889999999999999764
No 356
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=33.01 E-value=41 Score=27.07 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=34.3
Q ss_pred CCCccEEEEecCCC--CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 131 SPHYDLILMDCQMG--SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 131 ~~~~dlvl~D~~mp--~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
....|+|++--... ..+-.++++.+|+ .++|+++++++.+ .+..|+|.||.-
T Consensus 34 ~~GtDaI~vGgs~gvt~~~~~~~v~~ik~--------~~~Piil~p~~~~------~~~~gaD~il~p 87 (235)
T 3w01_A 34 MSQTDAIMIGGTDDVTEDNVIHLMSKIRR--------YPLPLVLEISNIE------SVMPGFDFYFVP 87 (235)
T ss_dssp TSSCSEEEECCSSCCCHHHHHHHHHHHTT--------SCSCEEEECCCST------TCCTTCSEEEEE
T ss_pred HcCCCEEEECCcCCcCHHHHHHHHHHhcC--------cCCCEEEecCCHH------HhhcCCCEEEEc
Confidence 55689999877532 2234556666652 5699999998642 235699988765
No 357
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=32.87 E-value=1.1e+02 Score=20.21 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=28.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLG-AGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~al~~l~ 105 (230)
+++|+|++- -.+-..+.+.|...| +++..+....+.++.+.
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~ 46 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN 46 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 468999999 555566666777778 88887776665555543
No 358
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=32.73 E-value=1.8e+02 Score=22.81 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc-CcHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK-DGEAAVEA 103 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~ 103 (230)
+.+..+||.+-..-+-..+.+.|.+.|++|..+. ...+..+.
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~ 65 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVST 65 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence 4456788888888888888888888999987765 44444433
No 359
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=32.71 E-value=93 Score=25.75 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=14.3
Q ss_pred cEEEEEeccHHHHHHHHHHHHh
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKK 86 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~ 86 (230)
.+|..||-++...+..++.+..
T Consensus 133 ~~v~~vDid~~~i~~Ar~~~~~ 154 (314)
T 2b2c_A 133 EKVTMCEIDEMVIDVAKKFLPG 154 (314)
T ss_dssp CEEEEECSCHHHHHHHHHHCTT
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 4677777777766666666543
No 360
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=32.32 E-value=1.9e+02 Score=22.88 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=27.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.++.+|||.+-..-+-..+.+.|.+.|++|..+....
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~ 46 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDV 46 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3466888999888888888888888899887665433
No 361
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=32.24 E-value=87 Score=24.31 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=29.0
Q ss_pred CCCccEEEEecCC-----CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHH
Q 026988 131 SPHYDLILMDCQM-----GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERE 184 (230)
Q Consensus 131 ~~~~dlvl~D~~m-----p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~ 184 (230)
+..||+||+|--. .-.+--++++.|.++ .... =+++|++..+....+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R------p~~~-~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNAR------PGHQ-TVIITGRGCHRDILD 169 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS------CTTC-EEEEECSSCCHHHHH
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC------cCCC-EEEEECCCCcHHHHH
Confidence 5679999999642 234556688888742 1223 456666665555443
No 362
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=32.06 E-value=1.8e+02 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=17.0
Q ss_pred CCCccEEEEecCCCCCC-----HHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMD-----GCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-----g~~l~~~lr~ 157 (230)
...||+|++|...|... ..++++.+++
T Consensus 187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~ 218 (321)
T 2pt6_A 187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYN 218 (321)
T ss_dssp CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHH
T ss_pred CCCceEEEECCcCCCCcchhhhHHHHHHHHHH
Confidence 45799999998544211 1466666654
No 363
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=32.04 E-value=45 Score=25.95 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
...||+| -.||+.- .++++++++. ..+|||+=-.-.+.++...++++||+..-+-
T Consensus 125 ~~~PD~i---EiLPGi~-p~iI~~i~~~-------~~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 125 KVQPDCI---ELLPGII-PEQVQKMTQK-------LHIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HHCCSEE---EEECTTC-HHHHHHHHHH-------HCCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred hcCCCEE---EECCchh-HHHHHHHHHh-------cCCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 4468877 3357754 3688888752 3579888777778999999999999977553
No 364
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=31.87 E-value=1.9e+02 Score=22.74 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~ 103 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~ 59 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDA 59 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 456788999988888888888888899998877654444443
No 365
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=31.53 E-value=80 Score=25.33 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=32.8
Q ss_pred CcEEEEEeccHHHHHHHHHHH-------HhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCC
Q 026988 64 GLSVLLVEDQAVLQRIGIRML-------KKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPH 133 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L-------~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (230)
+.+|..+|-++.+...+...+ +..|. ++. ...|..+.+..+... ...
T Consensus 105 g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~-----------------------~~~ 161 (258)
T 2r6z_A 105 GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT-----------------------QGK 161 (258)
T ss_dssp TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH-----------------------HCC
T ss_pred CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc-----------------------CCC
Confidence 458999999994444333333 22232 243 345665555444300 157
Q ss_pred ccEEEEecCCCCC
Q 026988 134 YDLILMDCQMGSM 146 (230)
Q Consensus 134 ~dlvl~D~~mp~~ 146 (230)
||+|++|-..+..
T Consensus 162 fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 162 PDIVYLDPMYPER 174 (258)
T ss_dssp CSEEEECCCC---
T ss_pred ccEEEECCCCCCc
Confidence 9999999876653
No 366
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=31.43 E-value=1.6e+02 Score=23.69 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=24.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNE 182 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~ 182 (230)
...||+|++... +.+...+++.+++ .+..+|++...+..+....
T Consensus 191 ~~~~d~v~~~~~--~~~a~~~~~~~~~------~g~~~~~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 191 EAGVSIIYWGGL--HTEAGLIIRQAAD------QGLKAKLVSGDGIVSNELA 234 (356)
T ss_dssp HTTCCEEEEESC--HHHHHHHHHHHHH------HTCCCEEEECGGGCSHHHH
T ss_pred hcCCCEEEEccC--chHHHHHHHHHHH------CCCCCcEEEeccccCHHHH
Confidence 456899987543 2233445555554 3445777665555554443
No 367
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=31.42 E-value=83 Score=26.67 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE-------eCCCCHHHHHHHHHHHHHhccC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL-------NKPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L-------~KP~~~~~L~~~l~~~l~~~~~ 216 (230)
++.+..+++. ....+|||...+-.+.++..+++.+|++.+. .-|.-..++.+.+...+.....
T Consensus 262 ~~~v~~i~~~-----~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~~~G~ 331 (345)
T 3oix_A 262 LANVHAFYKR-----LNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEKGY 331 (345)
T ss_dssp HHHHHHHHTT-----SCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-----cCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHHHcCC
Confidence 4566666641 2236999999999999999999999999752 3454456666666666665433
No 368
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=31.17 E-value=1.1e+02 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred CCCccEEEEecCCCCC-CHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSM-DGCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~-dg~~l~~~lr~ 157 (230)
...+|+|++...+... +-..+++.+++
T Consensus 134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~ 161 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVADPRSVLQTLWS 161 (285)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred CCCceEEEECchhhcccCHHHHHHHHHH
Confidence 4679999998766543 34556666654
No 369
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=31.13 E-value=1.4e+02 Score=24.37 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALV 177 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~ 177 (230)
...||+|++... +.+...+++.+++ .+..+|++...+..
T Consensus 194 ~~~~d~v~~~~~--~~~a~~~~~~~~~------~g~~~~~i~~~~~~ 232 (364)
T 3lop_A 194 AADVQAIFLGAT--AEPAAQFVRQYRA------RGGEAQLLGLSSID 232 (364)
T ss_dssp HSCCSEEEEESC--HHHHHHHHHHHHH------TTCCCEEEECTTSC
T ss_pred hCCCCEEEEecC--cHHHHHHHHHHHH------cCCCCeEEEeccCC
Confidence 456899998542 2234455566654 34457765444433
No 370
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=31.09 E-value=2e+02 Score=22.76 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=31.0
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 100 (230)
+.+..+||.+-..-+=..+.+.|.+.|++|..+....+.
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~ 63 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPR 63 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 567789999988888888888888899988876554443
No 371
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=31.07 E-value=1.7e+02 Score=26.11 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCCccEEEEecCCCCCCH-HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQMGSMDG-CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg-~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...+|+|.+|...+...+ +++++++++. .+.+||++-. -.+.+....+.++|++.+..
T Consensus 266 eaGvd~I~Id~a~g~~~~v~~~i~~i~~~------~~~~~vi~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 266 KASVDAIVLDTAHGHSQGVIDKVKEVRAK------YPSLNIIAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHH------CTTSEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred hhccceEEecccccchhhhhhHHHHHHHh------CCCceEEeee-eccHHHHHHHHHhCCCEEEE
Confidence 346899999988775444 4577777752 3446777533 34677788899999997764
No 372
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=31.05 E-value=1.9e+02 Score=22.61 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACV 51 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45668888888888888888888889998887765555444433
No 373
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=31.00 E-value=2.1e+02 Score=23.05 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=46.9
Q ss_pred CcEEEEE-eccHHH---HHHHHHHHHhcCCeEEE---E----cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCC
Q 026988 64 GLSVLLV-EDQAVL---QRIGIRMLKKLGAGVTL---V----KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSP 132 (230)
Q Consensus 64 ~~~iLiV-dd~~~~---~~~l~~~L~~~g~~v~~---~----~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (230)
..+|.++ +++... ...+.+.|++.|..+.. . .+....+..+. ..
T Consensus 139 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~-------------------------~~ 193 (358)
T 3hut_A 139 FTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIE-------------------------DE 193 (358)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHH-------------------------HH
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHH-------------------------hc
Confidence 3466655 344332 23456677777776542 2 24444555444 34
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~ 183 (230)
.||+|++.... .+...+++.+++ .+..+|++...+........
T Consensus 194 ~~d~i~~~~~~--~~a~~~~~~~~~------~g~~~p~~~~~~~~~~~~~~ 236 (358)
T 3hut_A 194 APQAIYLAMAY--EDAAPFLRALRA------RGSALPVYGSSALYSPKFID 236 (358)
T ss_dssp CCSEEEEESCH--HHHHHHHHHHHH------TTCCCCEEECGGGCSHHHHH
T ss_pred CCCEEEEccCc--hHHHHHHHHHHH------cCCCCcEEecCcccCHHHHH
Confidence 68999886432 133445566654 34567877666555554443
No 374
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=30.97 E-value=1.3e+02 Score=20.60 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=37.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMIN 109 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~ 109 (230)
+-||+-.++......+.+-.+..||.|.-+++.++.-..+...+.
T Consensus 3 ililintnndelikkikkevenqgyqvrdvndsdelkkemkklae 47 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAE 47 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHTTTTTCEEEEECSHHHHHHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHHHccCeeeeecCchHHHHHHHHHHHh
Confidence 356777788888888999999999999999999998877765543
No 375
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=30.89 E-value=1.8e+02 Score=22.27 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=56.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccC--CcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHG--SNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dlvl~D~~ 142 (230)
.+|+|++-...- ..+.+.|...|+ |..+..-.+.++.+. ....+..++.. +.+....-...|+|++-..
T Consensus 10 ~~viI~G~G~~G-~~la~~L~~~g~-v~vid~~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSEST-LECLRELRGSEV-FVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHH-HHHHHHSTTSEE-EEEESCGGGHHHHHH-------TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHH-HHHHHHHHhCCe-EEEEECCHHHHHHHh-------cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 478888876555 445555556677 766655444443332 01111111211 1122222446788887542
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 143 MGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 143 mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
-. ..-..++..+|+ .++.++||+.... ..........|++..+
T Consensus 81 ~d-~~n~~~~~~a~~------~~~~~~iia~~~~--~~~~~~l~~~G~~~vi 123 (234)
T 2aef_A 81 SD-SETIHCILGIRK------IDESVRIIAEAER--YENIEQLRMAGADQVI 123 (234)
T ss_dssp CH-HHHHHHHHHHHH------HCSSSEEEEECSS--GGGHHHHHHHTCSEEE
T ss_pred Cc-HHHHHHHHHHHH------HCCCCeEEEEECC--HhHHHHHHHCCCCEEE
Confidence 11 112334455554 3445677776643 4444566688998543
No 376
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=30.85 E-value=74 Score=27.35 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCCCccEEEEecCCC-CCC---HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCC----eeEeCCCCHH
Q 026988 130 NSPHYDLILMDCQMG-SMD---GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMD----TFLNKPAQEH 201 (230)
Q Consensus 130 ~~~~~dlvl~D~~mp-~~d---g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~----~~L~KP~~~~ 201 (230)
..-++|.|=+|-.+- +++ ...+++.+-..- ....+.+ +..+-.+.+....+.+.|++ .|+.||....
T Consensus 354 ~~l~~d~iKiD~~~i~~~~~~~~~~~~~~~i~~~----~~~~~~v-iaegVEt~~~~~~l~~~G~~~~QG~~~~~P~~~~ 428 (437)
T 3hvb_A 354 KHLTVQFIKIDGSFVQDLNQVENQEILKGLIAEL----HEQQKLS-IVPFVESASVLATLWQAGATYIQGYYLQGPSQAM 428 (437)
T ss_dssp TTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHH----HHTTCEE-EECCCCSHHHHHHHHHHTCSEEECTTTCCCBSSC
T ss_pred hhCCCCEEEECHHHHHhHhhCcHHHHHHHHHHHH----HHcCCCE-EeeeeCCHHHHHHHHHcCCCEeccccCCCCCccc
Confidence 367899999996543 222 223333333211 1123444 45677788888888999998 3477887654
Q ss_pred H
Q 026988 202 L 202 (230)
Q Consensus 202 ~ 202 (230)
+
T Consensus 429 ~ 429 (437)
T 3hvb_A 429 D 429 (437)
T ss_dssp C
T ss_pred c
Confidence 3
No 377
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=30.83 E-value=69 Score=25.85 Aligned_cols=72 Identities=4% Similarity=-0.044 Sum_probs=44.8
Q ss_pred cc-EEEEecCCCCC-C--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHc--CCCee--------EeCC-C
Q 026988 134 YD-LILMDCQMGSM-D--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNS--GMDTF--------LNKP-A 198 (230)
Q Consensus 134 ~d-lvl~D~~mp~~-d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~--G~~~~--------L~KP-~ 198 (230)
.+ +++.|+.-.++ . -+++++.+.+.-+ ....+|||.--+-.+.++....++. |+++. ...| +
T Consensus 171 a~~il~t~i~~dG~~~G~d~eli~~l~~~~~---~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~ 247 (260)
T 2agk_A 171 TNEFLIHAADVEGLCGGIDELLVSKLFEWTK---DYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLV 247 (260)
T ss_dssp CSEEEEEC-------CCCCHHHHHHHHHHHT---TCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSB
T ss_pred cCEEEEEeeccccCcCCCCHHHHHHHHHhhc---ccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCC
Confidence 44 55667654332 2 4778888875210 0116899998888899999999987 88874 3344 7
Q ss_pred CHHHHHHHHH
Q 026988 199 QEHLLAAAIV 208 (230)
Q Consensus 199 ~~~~L~~~l~ 208 (230)
+..++.+.++
T Consensus 248 ~~~~~~~~~~ 257 (260)
T 2agk_A 248 KFEDCCRWNE 257 (260)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777766543
No 378
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=30.71 E-value=99 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=14.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHh
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKK 86 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~ 86 (230)
.+|..||-++...+..++.+..
T Consensus 120 ~~v~~vDid~~~i~~ar~~~~~ 141 (304)
T 2o07_A 120 ESVVQCEIDEDVIQVSKKFLPG 141 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHH
T ss_pred CEEEEEECCHHHHHHHHHHhHH
Confidence 4677777777666666665543
No 379
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=30.68 E-value=1.8e+02 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=29.4
Q ss_pred CCCcEEEEEecc--HHHHHHHHHHHHhcCCeEEEEcCcH--HHHHHHH
Q 026988 62 LEGLSVLLVEDQ--AVLQRIGIRMLKKLGAGVTLVKDGE--AAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~--~~~~~~l~~~L~~~g~~v~~~~~~~--~al~~l~ 105 (230)
+.+.+|||.+-. .=+-..+.+.|.+.|++|..+.... +.++.+.
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~ 71 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLC 71 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHH
Confidence 456688888855 3366677777778899987765443 5555543
No 380
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=30.44 E-value=2.1e+02 Score=24.40 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=36.9
Q ss_pred CCCccEEEEecCCCCCC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 131 SPHYDLILMDCQMGSMD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...+|+|.+|..-.... -.+.++++++ ..+.+||++-+ -.+.+....+.++|+|.+..
T Consensus 118 eaGvd~I~idta~G~~~~~~~~I~~ik~------~~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 118 EAGVDVLLIDSSHGHSEGVLQRIRETRA------AYPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHH------HCTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred hCCCCEEEEeCCCCCCHHHHHHHHHHHH------hcCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 34689999986533222 2455666664 23457776532 24567788889999997776
No 381
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=30.39 E-value=2e+02 Score=22.95 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.9
Q ss_pred CceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 167 SIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 167 ~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+|+|..++-.+.++.....+ |+++++.
T Consensus 208 ~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 208 GGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 478999999888999999999 9999975
No 382
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=30.33 E-value=1.8e+02 Score=24.90 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=41.2
Q ss_pred CccEEEEecCC-----CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe-CCC
Q 026988 133 HYDLILMDCQM-----GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN-KPA 198 (230)
Q Consensus 133 ~~dlvl~D~~m-----p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~-KP~ 198 (230)
.+|.|.+.-.- .+...++++..+++. ....+|||+-.+-.+..+..+++..|++.+.. .|+
T Consensus 273 Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~a-----v~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 273 GLNGILVSNHGARQLDGVPATIDVLPEIVEA-----VEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp TCCEEEECCGGGTSSTTCCCHHHHHHHHHHH-----HTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCCEEEeCCCCCCcCCCCcChHHHHHHHHHH-----cCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 46666663211 123456777777642 22358999999999999999999999998744 443
No 383
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=30.28 E-value=1.5e+02 Score=21.27 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=43.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC--eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA--GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
.+|..+|-++......++.+...+. ++. ...|..+.+..+.. ....||+|++|.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------------------~~~~fD~i~~~~ 124 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE-----------------------EKLQFDLVLLDP 124 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH-----------------------TTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh-----------------------cCCCCCEEEECC
Confidence 5899999999998888888877764 343 34455554332210 145799999985
Q ss_pred CCCCCCHHHHHHHH
Q 026988 142 QMGSMDGCKATRVI 155 (230)
Q Consensus 142 ~mp~~dg~~l~~~l 155 (230)
.....+..++++.+
T Consensus 125 ~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 125 PYAKQEIVSQLEKM 138 (187)
T ss_dssp CGGGCCHHHHHHHH
T ss_pred CCCchhHHHHHHHH
Confidence 43334445555555
No 384
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=30.17 E-value=1.6e+02 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~ 79 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELS 79 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 45678899998888888888889899999887654444333
No 385
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=30.16 E-value=1.8e+02 Score=23.63 Aligned_cols=41 Identities=5% Similarity=0.075 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.++++++|+ ..++|+++=-+-.+++...+....|+|+.+.-
T Consensus 197 ~~~v~~vr~-------~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 197 HALLERLQQ-------FDAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp HHHHHHHHH-------TTCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHH-------hcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 456666764 23578887666667788877899999999886
No 386
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=29.99 E-value=73 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=23.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC-eEEEE
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA-GVTLV 94 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~-~v~~~ 94 (230)
+.+|.-||-++......++.+...|. ++...
T Consensus 44 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~ 75 (185)
T 3mti_A 44 SKKVYAFDVQEQALGKTSQRLSDLGIENTELI 75 (185)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE
Confidence 45888999888888888888877664 34433
No 387
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=29.67 E-value=1.2e+02 Score=23.87 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=38.6
Q ss_pred cc-EEEEecCCC---CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 134 YD-LILMDCQMG---SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 134 ~d-lvl~D~~mp---~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+| +.+.|..-. ...-+++++.+++ ...+|+++--+-.+.+....+++.|++..+.
T Consensus 49 ~~~i~v~d~~~~~~~~~~~~~~i~~i~~-------~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 49 AGEILLTSIDRDGTKSGYDTEMIRFVRP-------LTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp CSEEEEEETTTTTCSSCCCHHHHHHHGG-------GCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CCEEEEEecCcccCCCcccHHHHHHHHH-------hCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 45 445666432 2223677777764 2468999998888889999999999987653
No 388
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=29.56 E-value=75 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=22.8
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEE
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTL 93 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~ 93 (230)
.++.|++||+--..+ ...+.+.|++.|+.+..
T Consensus 4 ~~l~g~~vlvtr~~~--~~~l~~~L~~~G~~~~~ 35 (261)
T 1wcw_A 4 LEEDAVRVAYAGLRR--KEAFKALAEKLGFTPLL 35 (261)
T ss_dssp ----CCEEEECCSTT--HHHHHHHHHHTTCEEEE
T ss_pred CCCCCCEEEEeCCCc--hHHHHHHHHHCCCcEEE
Confidence 456788999887664 68899999999987654
No 389
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=29.54 E-value=1.7e+02 Score=24.68 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=37.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCe-E-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAG-V-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~-v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~ 141 (230)
..+|.-||-++......++.++..|.. + ....|..+.+..+.. ....||+|++|.
T Consensus 231 ~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~-----------------------~~~~fD~Ii~dp 287 (382)
T 1wxx_A 231 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-----------------------EGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-----------------------TTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh-----------------------cCCCeeEEEECC
Confidence 347889999999888888888877753 3 344565555443321 145799999985
No 390
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=29.48 E-value=1.6e+02 Score=24.62 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.5
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~ 94 (230)
...+.+++||+-....-+.+.++|...|..|.++
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~ 207 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSV 207 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEE
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEE
Confidence 4678899999998876677888888889888877
No 391
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.46 E-value=1.5e+02 Score=24.16 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=8.0
Q ss_pred CCccEEEEe
Q 026988 132 PHYDLILMD 140 (230)
Q Consensus 132 ~~~dlvl~D 140 (230)
..||+||+|
T Consensus 181 ~~~dlvIiD 189 (296)
T 2px0_A 181 SEYDHVFVD 189 (296)
T ss_dssp GGSSEEEEE
T ss_pred cCCCEEEEe
Confidence 468999999
No 392
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=29.46 E-value=1.7e+02 Score=22.24 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=26.6
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
.++||.+-..-+-..+.+.|.+.|++|..+....+.++
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 40 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLE 40 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 46778887777777788888888888776654444333
No 393
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=29.34 E-value=21 Score=29.57 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=51.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
..+++.+|=|+.........+...|....+. .|... ......+|++|+-..
T Consensus 156 ~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~----------------------------~~p~~~~DvaL~lkt 207 (281)
T 3lcv_B 156 ETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE----------------------------DRLDEPADVTLLLKT 207 (281)
T ss_dssp TCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT----------------------------SCCCSCCSEEEETTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc----------------------------cCCCCCcchHHHHHH
Confidence 4599999999999999999999887653321 12110 112567999999988
Q ss_pred CCCC------CHHHHHHHHHHhhhhhhcCCCceEEEEecCC
Q 026988 143 MGSM------DGCKATRVIRRLEAEAETGQSIPIIAFTALV 177 (230)
Q Consensus 143 mp~~------dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~ 177 (230)
+|.+ .|+++++.++ .|.|++|...
T Consensus 208 i~~Le~q~kg~g~~ll~aL~-----------~~~vvVSfp~ 237 (281)
T 3lcv_B 208 LPCLETQQRGSGWEVIDIVN-----------SPNIVVTFPT 237 (281)
T ss_dssp HHHHHHHSTTHHHHHHHHSS-----------CSEEEEEEEC
T ss_pred HHHhhhhhhHHHHHHHHHhC-----------CCCEEEeccc
Confidence 8755 4565555544 4677777643
No 394
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=29.19 E-value=2.1e+02 Score=23.43 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=61.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCC--cccccCCCCccEEEEec
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGS--NLETHNSPHYDLILMDC 141 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlvl~D~ 141 (230)
..+|+|++-...- ..+.+.|.+.|+ +..++.-.+..+ +.. ....+..++... .+....-...|.+++-.
T Consensus 115 ~~~viI~G~G~~g-~~l~~~L~~~g~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~ 185 (336)
T 1lnq_A 115 SRHVVICGWSEST-LECLRELRGSEV-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKANVRGARAVIVDL 185 (336)
T ss_dssp -CEEEEESCCHHH-HHHHTTGGGSCE-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHTCSTTEEEEEECC
T ss_pred cCCEEEECCcHHH-HHHHHHHHhCCc-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhcChhhccEEEEcC
Confidence 3478888887766 445556666788 777766655555 431 112222222221 13333345678888754
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE
Q 026988 142 QMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL 194 (230)
Q Consensus 142 ~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L 194 (230)
.- +..-...+..+|+ .+++.+|++-.. ++.........|++..+
T Consensus 186 ~~-d~~n~~~~~~ar~------~~~~~~iiar~~--~~~~~~~l~~~G~d~vi 229 (336)
T 1lnq_A 186 ES-DSETIHCILGIRK------IDESVRIIAEAE--RYENIEQLRMAGADQVI 229 (336)
T ss_dssp SS-HHHHHHHHHHHHT------TCTTSEEEEECS--SGGGHHHHHHTTCSEEE
T ss_pred Cc-cHHHHHHHHHHHH------HCCCCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 31 1122334455554 345567776654 34455666789998664
No 395
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=29.18 E-value=61 Score=25.08 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcC----CeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccE
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLG----AGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDL 136 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g----~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 136 (230)
.+++.+|-++..... ...+.+.+...| ..+..+.+..+++.++. ....|+
T Consensus 134 dL~g~~v~v~~g~~~-~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-------------------------~G~vDa 187 (259)
T 4dz1_A 134 ELNKYSIGYPRGMAY-SDLIKNDLEPKGYYSLSKVKLYPTYNETMADLK-------------------------NGNLDL 187 (259)
T ss_dssp GGGGSCEEEETTSTH-HHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHH-------------------------HTSCSE
T ss_pred HhCCCEEEEeCCcHH-HHHHHHhcccccccccceeEecCCHHHHHHHHH-------------------------cCCCCE
Confidence 356778877776554 456777777666 46778889999999987 678999
Q ss_pred EEEec
Q 026988 137 ILMDC 141 (230)
Q Consensus 137 vl~D~ 141 (230)
++.|.
T Consensus 188 ~~~~~ 192 (259)
T 4dz1_A 188 AFIEE 192 (259)
T ss_dssp EEEEH
T ss_pred EEecH
Confidence 99984
No 396
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=29.09 E-value=1.5e+02 Score=21.63 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=40.1
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+++.+|-++...... ..+.+.+... ..+..+.+..+++.++. ....|+++.|
T Consensus 106 dL~g~~v~~~~g~~~~-~~l~~~~~~~-~~~~~~~~~~~~~~~l~-------------------------~grvDa~~~~ 158 (227)
T 3tql_A 106 GLKGKIIGVQGGTTFD-SYLQDSFGNS-ITIQRYPSEEDALMDLT-------------------------SGRVDAVVGD 158 (227)
T ss_dssp TTTTCEEEEETTSHHH-HHHHHHHGGG-SEEEEESSHHHHHHHHT-------------------------TTSSSEEESC
T ss_pred HhCCCEEEEEecccHH-HHHHHhcccc-ceEEEcCCHHHHHHHHH-------------------------cCCcCEEEeC
Confidence 4577888888776653 4555555432 68888999999999986 7789999987
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 159 ~ 159 (227)
T 3tql_A 159 T 159 (227)
T ss_dssp H
T ss_pred h
Confidence 3
No 397
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=29.01 E-value=2.5e+02 Score=25.21 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHH-cCCCeeEe------CCCCHHHHHHHH
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFN-SGMDTFLN------KPAQEHLLAAAI 207 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~-~G~~~~L~------KP~~~~~L~~~l 207 (230)
.+++++.+++ ...+|||.--+-.+.++...+++ .|+++.+. .+++..++.+.+
T Consensus 484 d~~li~~l~~-------~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 484 DLELIEHVKD-------AVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543 (555)
T ss_dssp CHHHHHHHHH-------HCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred CHHHHHHHHH-------hCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 3778888874 24689999888889999999998 89998754 467777776654
No 398
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.00 E-value=2.3e+02 Score=22.88 Aligned_cols=18 Identities=6% Similarity=-0.228 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCeEEEEc
Q 026988 78 RIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~ 95 (230)
..+.+.+.+.||.+..+.
T Consensus 88 ~gi~~~a~~~g~~~~~~~ 105 (344)
T 3kjx_A 88 TGINQVLEDTELQPVVGV 105 (344)
T ss_dssp HHHHHHHTSSSSEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 344555555666655543
No 399
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=28.93 E-value=2.3e+02 Score=22.97 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~ 103 (230)
+.+.+|||.+-.--+-..+.+.|.+.|++|..+.-..+.++.
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~ 47 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDK 47 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 345689999988888888888888899998766544444433
No 400
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=28.87 E-value=1.9e+02 Score=21.94 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
+.+++|||.+-.--+-..+.+.|.+.|++|..+....+.++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~ 45 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV 45 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45678899988888888888888888998876654444333
No 401
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=28.87 E-value=1.1e+02 Score=24.13 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=26.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~ 95 (230)
++|||.+-.-.+-..+.+.|.+.|++|....
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~ 36 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD 36 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 5899999888888888888888899988764
No 402
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=28.83 E-value=1.6e+02 Score=24.49 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=31.5
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
...+.+++||.-....-+-+..+|...|..|++++.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~ 197 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHS 197 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 467889999998887778888999999999999976
No 403
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=28.74 E-value=2.2e+02 Score=22.51 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=28.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 45 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIA 45 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 456777777777777777778788888776655554444443
No 404
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=28.69 E-value=1.6e+02 Score=20.88 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Q 026988 151 ATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETI 211 (230)
Q Consensus 151 l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l 211 (230)
+++.+++ ..+++.++|+.............|...|+...-+..+....+.+.+
T Consensus 39 ~l~~l~~--------~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk~~~~~~~~~~~ 91 (164)
T 3e8m_A 39 GIFWAHN--------KGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDKLSAAEELCNEL 91 (164)
T ss_dssp HHHHHHH--------TTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCHHHHHHHHHHHH
T ss_pred HHHHHHH--------CCCEEEEEeCCChHHHHHHHHHcCCCEeecccCChHHHHHHHHHHc
Confidence 4666664 3478999999887777777778999988876544555554444433
No 405
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=28.62 E-value=1.1e+02 Score=20.14 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~ 95 (230)
+-.+.|+-||+....-+.++++..||.+....
T Consensus 29 G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 29 GGVVTVLVDNDISRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 44666777888888999999999999987765
No 406
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=28.61 E-value=2.6e+02 Score=23.45 Aligned_cols=78 Identities=9% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
...+|.|++|+.-.-.+--++.+.++..... .....++++=+...+..++..++..|++++ ++|--+.+++......
T Consensus 61 ~~GaD~vilDlEha~~~~e~~~~~l~a~~~~--~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~ 138 (339)
T 1izc_A 61 ATKPDFVWIDVEHGMFNRLELHDAIHAAQHH--SEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKE 138 (339)
T ss_dssp HTCCSEEEEETTTSCCCHHHHHHHHHHHHHH--TTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCcHHHHHHHHHHhhhc--CCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 4569999999976555555555556543211 111255666666677888999999999975 4444567777766554
Q ss_pred H
Q 026988 210 T 210 (230)
Q Consensus 210 ~ 210 (230)
+
T Consensus 139 ~ 139 (339)
T 1izc_A 139 M 139 (339)
T ss_dssp H
T ss_pred h
Confidence 3
No 407
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=28.60 E-value=1.7e+02 Score=21.39 Aligned_cols=54 Identities=13% Similarity=-0.016 Sum_probs=38.6
Q ss_pred ccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEE
Q 026988 60 KVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILM 139 (230)
Q Consensus 60 ~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~ 139 (230)
..+++.+|-++...... ..+.+.+ .+..+..+.+..+++.++. ....|+++.
T Consensus 108 ~dL~g~~v~~~~g~~~~-~~l~~~~--~~~~~~~~~~~~~~~~~l~-------------------------~grvDa~~~ 159 (229)
T 2y7i_A 108 ADLKGKKVGLENGTTHQ-RYLQDKQ--QAITPVAYDSYLNAFTDLK-------------------------NNRLEGVFG 159 (229)
T ss_dssp GGGTTCEEEEETTSHHH-HHHHHHC--TTSEEEEESCHHHHHHHHH-------------------------TTSCSEEEE
T ss_pred HHHCCCEEEEecCCcHH-HHHHHhC--CCCeEEecCCHHHHHHHHH-------------------------cCCcCEEEe
Confidence 34677888888776643 3333322 2568888899999999987 778999999
Q ss_pred ec
Q 026988 140 DC 141 (230)
Q Consensus 140 D~ 141 (230)
|.
T Consensus 160 ~~ 161 (229)
T 2y7i_A 160 DV 161 (229)
T ss_dssp EH
T ss_pred ch
Confidence 83
No 408
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=28.50 E-value=98 Score=24.01 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.+++++.+++ . .+||++..+-.+.++...+++.|++.++.
T Consensus 175 ~~~~i~~~~~------~--~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 175 DVALIEALCK------A--GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CHHHHHHHHH------T--TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHh------C--CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3677777764 2 58999988888899999999999998754
No 409
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=28.43 E-value=1.4e+02 Score=23.03 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCeEEEEcC
Q 026988 78 RIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~~ 96 (230)
..+.+.+++.||.+..+..
T Consensus 28 ~gi~~~~~~~g~~~~~~~~ 46 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS 46 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 3456667778888776653
No 410
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=28.30 E-value=1.5e+02 Score=24.04 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=15.4
Q ss_pred CCCccEEEEecCCCCCCH-----HHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDG-----CKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg-----~~l~~~lr~ 157 (230)
...||+|++|...|.... .++++.+++
T Consensus 167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~ 198 (304)
T 3bwc_A 167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLR 198 (304)
T ss_dssp TTCEEEEEEECC---------CCHHHHHHHHH
T ss_pred CCceeEEEECCCCccccchhhhHHHHHHHHHH
Confidence 457999999987664221 356666654
No 411
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=28.24 E-value=2.2e+02 Score=22.43 Aligned_cols=21 Identities=5% Similarity=-0.140 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCeEEEEcCcH
Q 026988 78 RIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~~~~ 98 (230)
..+.+.+++.||.+..+....
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~ 67 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSEN 67 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSS
T ss_pred HHHHHHHHHCCCEEEEEeCCC
Confidence 345666777888887765443
No 412
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=28.20 E-value=2.1e+02 Score=22.60 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=38.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC-eEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA-GVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQ 142 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~-~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~ 142 (230)
.+|+-+|-++.....+++.++..|. ++.+ ..|..+....+.. ....||+|++|.-
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~-----------------------~~~~fD~Vl~d~P 165 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK-----------------------NEIFFDKILLDAP 165 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-----------------------TTCCEEEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh-----------------------ccccCCEEEEcCC
Confidence 6899999999999999999988886 4443 3455443322210 1346999999954
Q ss_pred C
Q 026988 143 M 143 (230)
Q Consensus 143 m 143 (230)
.
T Consensus 166 c 166 (274)
T 3ajd_A 166 C 166 (274)
T ss_dssp C
T ss_pred C
Confidence 3
No 413
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=28.12 E-value=1.6e+02 Score=24.88 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=38.1
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC---eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA---GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~---~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+|.-||-++......++.+...|. ++. ...|..+.+..+.. ....||+|++|
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~-----------------------~~~~fD~Ii~d 300 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-----------------------RGEKFDVIVMD 300 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-----------------------TTCCEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh-----------------------cCCCCCEEEEC
Confidence 4899999999998998888887776 454 44565555443321 13579999999
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 301 p 301 (396)
T 3c0k_A 301 P 301 (396)
T ss_dssp C
T ss_pred C
Confidence 5
No 414
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=28.09 E-value=1.2e+02 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=25.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHH
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 100 (230)
|+|||.+-.-.+-..+.+.|.+.|++|..+.-..+.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK 36 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh
Confidence 478888877777777777777788888766544443
No 415
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=28.02 E-value=1.2e+02 Score=24.67 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee------Ee-CCCCHHHHHHHHHHHHHhccC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF------LN-KPAQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~------L~-KP~~~~~L~~~l~~~l~~~~~ 216 (230)
++.++.+++. . +++|||..-+-.+.++..+++..|++.+ +. .|.-..++.+.+...+.....
T Consensus 232 ~~~i~~v~~~-----~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~~g~ 300 (314)
T 2e6f_A 232 LANVNAFYRR-----C-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGY 300 (314)
T ss_dssp HHHHHHHHHH-----C-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh-----c-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 5666777641 2 4799999999889999999999999865 32 666566677777766665443
No 416
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=27.98 E-value=84 Score=22.63 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=41.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC--CCHHHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP--AQEHLLAAAIVE 209 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP--~~~~~L~~~l~~ 209 (230)
...|++|+- .-+..+.+.+. ..+|+|++....+.......+...-.+++..+ ++.++|.++|.+
T Consensus 85 ~~ad~~I~~-----~G~~t~~Ea~~---------~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 150 (170)
T 2o6l_A 85 PKTRAFITH-----GGANGIYEAIY---------HGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKR 150 (170)
T ss_dssp TTEEEEEEC-----CCHHHHHHHHH---------HTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHH
T ss_pred CCcCEEEEc-----CCccHHHHHHH---------cCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHH
Confidence 457777762 12333444443 24788888665444334444444344566555 488999999999
Q ss_pred HHHhc
Q 026988 210 TIARK 214 (230)
Q Consensus 210 ~l~~~ 214 (230)
++...
T Consensus 151 ll~~~ 155 (170)
T 2o6l_A 151 VINDP 155 (170)
T ss_dssp HHHCH
T ss_pred HHcCH
Confidence 98654
No 417
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=27.66 E-value=2.3e+02 Score=22.51 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=42.0
Q ss_pred cEEEEEeccHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLK-KLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~-~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+||.|+.-.-.+-+.+.+.+. ..++++..+.+..+-++.+. ...+| |++|..-
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-------------------------~~~~D-vvIDfT~ 54 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-------------------------DGNTE-VVIDFTH 54 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-------------------------HTTCC-EEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-------------------------ccCCc-EEEEccC
Confidence 367888853333344444454 44787765543221122221 12478 7888887
Q ss_pred CCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChH
Q 026988 144 GSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180 (230)
Q Consensus 144 p~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~ 180 (230)
|+ ...+.+....+ ..+|+|+-|.--+.+
T Consensus 55 p~-a~~~~~~~a~~--------~g~~~VigTTG~~~e 82 (245)
T 1p9l_A 55 PD-VVMGNLEFLID--------NGIHAVVGTTGFTAE 82 (245)
T ss_dssp TT-THHHHHHHHHH--------TTCEEEECCCCCCHH
T ss_pred hH-HHHHHHHHHHH--------cCCCEEEcCCCCCHH
Confidence 75 34555554432 346777754433333
No 418
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=27.56 E-value=1.8e+02 Score=21.21 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=47.4
Q ss_pred EEEEEec--cHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 66 SVLLVED--QAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 66 ~iLiVdd--~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
+|++++- .......+...|...|..+....+.......+. .-.+=|++|+ +..
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~------------------------~~~~~d~vI~-iS~ 105 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLG------------------------MVTPQDVVIA-ISN 105 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTST------------------------TCCTTCEEEE-ECS
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhc------------------------cCCCCCEEEE-EeC
Confidence 5555553 334445556666666776666655433211110 0122243333 444
Q ss_pred CCCC--HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCC
Q 026988 144 GSMD--GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKP 197 (230)
Q Consensus 144 p~~d--g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP 197 (230)
++.+ -.++++..++ ...++|.+|+......... +|..|.-|
T Consensus 106 sG~t~~~~~~~~~ak~--------~g~~vi~IT~~~~s~la~~-----ad~~l~~~ 148 (183)
T 2xhz_A 106 SGESSEITALIPVLKR--------LHVPLICITGRPESSMARA-----ADVHLCVK 148 (183)
T ss_dssp SSCCHHHHHHHHHHHT--------TTCCEEEEESCTTSHHHHH-----SSEEEECC
T ss_pred CCCCHHHHHHHHHHHH--------CCCCEEEEECCCCChhHHh-----CCEEEEeC
Confidence 4443 3445555543 4589999999765543322 55555444
No 419
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=27.55 E-value=2e+02 Score=24.45 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHH
Q 026988 74 AVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATR 153 (230)
Q Consensus 74 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~ 153 (230)
..-...|.+..++.|..+.+..-..++++.+... .+|+ +=+.-.+|.-+.|++
T Consensus 90 ~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~-------------------------~v~~--~KI~S~~~~n~~LL~ 142 (349)
T 2wqp_A 90 EEDEIKLKEYVESKGMIFISTLFSRAAALRLQRM-------------------------DIPA--YKIGSGECNNYPLIK 142 (349)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH-------------------------TCSC--EEECGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhc-------------------------CCCE--EEECcccccCHHHHH
Confidence 4556788899999999888877777888887622 1222 333334566788888
Q ss_pred HHHHhhhhhhcCCCceEEEEecCCChHhHHHH
Q 026988 154 VIRRLEAEAETGQSIPIIAFTALVTADNEREC 185 (230)
Q Consensus 154 ~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~ 185 (230)
.+-+ ...|||+-|+..+.+.+..+
T Consensus 143 ~va~--------~gkPviLstGmat~~Ei~~A 166 (349)
T 2wqp_A 143 LVAS--------FGKPIILSTGMNSIESIKKS 166 (349)
T ss_dssp HHHT--------TCSCEEEECTTCCHHHHHHH
T ss_pred HHHh--------cCCeEEEECCCCCHHHHHHH
Confidence 7753 35789999998876665544
No 420
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=27.50 E-value=2.2e+02 Score=22.13 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCCcEEEEEeccHH--HHHHHHHHHHhcCCeEEEEcCcH
Q 026988 62 LEGLSVLLVEDQAV--LQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 62 ~~~~~iLiVdd~~~--~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
+.+.++||.+-.-. +-..+.+.|.+.|++|..+....
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 45668899987743 66777778878899988765433
No 421
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=27.49 E-value=79 Score=24.04 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhhhhhhcCCCceEEE--EecCCChHhHHHHHHcCCCeeEeCCCC
Q 026988 146 MDGCKATRVIRRLEAEAETGQSIPIIA--FTALVTADNERECFNSGMDTFLNKPAQ 199 (230)
Q Consensus 146 ~dg~~l~~~lr~~~~~~~~~~~~pii~--ls~~~~~~~~~~~~~~G~~~~L~KP~~ 199 (230)
..|+++++.+|+. .+..||.+ ............+.++|++.++.-...
T Consensus 38 ~~g~~~i~~ir~~------~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 38 REGVNAIKAIKEK------YPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp HHTTHHHHHHHHH------CTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred hccHHHHHHHHHh------CCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 3578888988862 23467653 233333334788999999988775444
No 422
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=27.47 E-value=2.5e+02 Score=22.75 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=27.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNER 183 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~ 183 (230)
...||+|++... +.+...+++.+++ .+...|++...+..+.....
T Consensus 212 ~~~~dav~~~~~--~~~a~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~ 256 (386)
T 3sg0_A 212 ATKPDAVFIASA--GTPAVLPQKALRE------RGFKGAIYQTHGVATEEFIK 256 (386)
T ss_dssp HTCCSEEEEECC--SGGGHHHHHHHHH------TTCCSEEECCGGGCSHHHHH
T ss_pred hcCCCEEEEecC--cchHHHHHHHHHH------cCCCCcEEeccccCCHHHHH
Confidence 456899988643 2346667777775 33446776665555554443
No 423
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=27.33 E-value=2.2e+02 Score=23.92 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=33.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCH--HHHHHHHHH
Q 026988 132 PHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQE--HLLAAAIVE 209 (230)
Q Consensus 132 ~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~--~~L~~~l~~ 209 (230)
.++|+|++|+. ..++...++..|.++ -.+.....+..|...|..|=+.+ .++.+.+..
T Consensus 159 ~~~D~ivcDig--eSs~~~~ve~~Rtl~------------------vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~ 218 (321)
T 3lkz_A 159 ECCDTLLCDIG--ESSSSAEVEEHRTIR------------------VLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMEL 218 (321)
T ss_dssp CCCSEEEECCC--CCCSCHHHHHHHHHH------------------HHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHH
T ss_pred CCCCEEEEECc--cCCCChhhhhhHHHH------------------HHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHH
Confidence 56899999998 555544444444321 02344555666655777775555 444444443
No 424
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=27.26 E-value=1.7e+02 Score=25.23 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHH
Q 026988 75 VLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRV 154 (230)
Q Consensus 75 ~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~ 154 (230)
.-...|.+..++.|..+.+..-..++++.+. ...+|+ +=+--.++.-+.|++.
T Consensus 101 e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~-------------------------~~~vd~--~KIgS~~~~N~pLL~~ 153 (385)
T 1vli_A 101 EWILPLLDYCREKQVIFLSTVCDEGSADLLQ-------------------------STSPSA--FKIASYEINHLPLLKY 153 (385)
T ss_dssp GGHHHHHHHHHHTTCEEECBCCSHHHHHHHH-------------------------TTCCSC--EEECGGGTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEccCCHHHHHHHH-------------------------hcCCCE--EEECcccccCHHHHHH
Confidence 3457888999999998888777788888886 322333 3334446777888888
Q ss_pred HHHhhhhhhcCCCceEEEEecCCChHhHHHHH----HcCCCeeE
Q 026988 155 IRRLEAEAETGQSIPIIAFTALVTADNERECF----NSGMDTFL 194 (230)
Q Consensus 155 lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~----~~G~~~~L 194 (230)
+-+ ...|||+-|+..+.+.+..+. ..|...++
T Consensus 154 va~--------~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~ii 189 (385)
T 1vli_A 154 VAR--------LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIA 189 (385)
T ss_dssp HHT--------TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEE
T ss_pred HHh--------cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 753 357999999988777655543 35553443
No 425
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=27.23 E-value=2.2e+02 Score=22.20 Aligned_cols=18 Identities=6% Similarity=-0.178 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 026988 196 KPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 196 KP~~~~~L~~~l~~~l~~ 213 (230)
-.++.+.-...+..++..
T Consensus 175 ~~~~~~~~~~~~~~~l~~ 192 (289)
T 2fep_A 175 GDYTYDSGLEALQHLMSL 192 (289)
T ss_dssp CCSCHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 345666666666666653
No 426
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=27.18 E-value=1.7e+02 Score=24.61 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHH
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~ 209 (230)
-+.++..|+. .+..||.+.... .+...++.++|++......++++++.++++.
T Consensus 219 ~~Av~~ar~~------~p~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~ 271 (320)
T 3paj_A 219 RQAISTAKQL------NPGKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKI 271 (320)
T ss_dssp HHHHHHHHHH------STTSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHh------CCCCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 3456666653 234577776543 4667788899999999999999999888865
No 427
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=27.15 E-value=1.8e+02 Score=22.89 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
+.+.++||.+-..-+-..+.+.|.+.|+.|..+....+.++.+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~ 67 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEI 67 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5667899999888888888899989999988776655554444
No 428
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=27.12 E-value=2.1e+02 Score=23.16 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
.++++++|+ ..++||++=.+-.+.+........|+|.++.-
T Consensus 195 ~~~v~~vr~-------~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 195 ENILTQLAE-------FNAPPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp HHHHHHHHT-------TTCCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHH-------hcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 456666664 23578887666666778877999999999886
No 429
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=27.10 E-value=2.3e+02 Score=22.19 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=11.4
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q 026988 194 LNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 194 L~KP~~~~~L~~~l~~~l~~ 213 (230)
+.-.++.+.-.+.+.+++..
T Consensus 163 ~~~~~~~~~~~~~~~~~l~~ 182 (289)
T 3k9c_A 163 VTGGTTETEGAEGMHTLLEM 182 (289)
T ss_dssp ECCCSSHHHHHHHHHHHHTS
T ss_pred EECCCCHHHHHHHHHHHHcC
Confidence 33345566666666666653
No 430
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=27.05 E-value=1.7e+02 Score=20.89 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCC
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVT 178 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~ 178 (230)
-.++++.+++ ...++.++|+...
T Consensus 32 ~~~~l~~L~~--------~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 32 SLQAIARLTQ--------ADWTVVLATNQSG 54 (179)
T ss_dssp HHHHHHHHHH--------TTCEEEEEEECTT
T ss_pred HHHHHHHHHH--------CCCEEEEEECCCc
Confidence 4678888875 3478999998765
No 431
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=26.95 E-value=1.3e+02 Score=25.00 Aligned_cols=45 Identities=16% Similarity=0.024 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 145 SMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 145 ~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
+....+.+..+++. ...+|||...+-.+..+..+++..|++.+..
T Consensus 235 g~~~~~~l~~v~~~------~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 235 GISTAASLAEIRSE------FPASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp SCCHHHHHHHHHHH------CTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CccHHHHHHHHHHh------cCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 34566667766641 2469999999999999999999999998754
No 432
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=26.90 E-value=1.9e+02 Score=22.47 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=34.2
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~ 49 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIR 49 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45678999998888888888889889999887766665555544
No 433
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=26.82 E-value=2.8e+02 Score=23.22 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceE
Q 026988 91 VTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPI 170 (230)
Q Consensus 91 v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pi 170 (230)
...+.+.+++.+++. ..+|+|.+|-. +- +.++.+.+. ...+ ..
T Consensus 235 eVEVdtldea~eAl~--------------------------aGaD~I~LDn~----~~-~~l~~av~~-----l~~~-v~ 277 (320)
T 3paj_A 235 EVETETLAELEEAIS--------------------------AGADIIMLDNF----SL-EMMREAVKI-----NAGR-AA 277 (320)
T ss_dssp EEEESSHHHHHHHHH--------------------------TTCSEEEEESC----CH-HHHHHHHHH-----HTTS-SE
T ss_pred EEEECCHHHHHHHHH--------------------------cCCCEEEECCC----CH-HHHHHHHHH-----hCCC-Ce
Confidence 356888888887775 24799999963 33 333333321 1123 45
Q ss_pred EEEecCCChHhHHHHHHcCCCee
Q 026988 171 IAFTALVTADNERECFNSGMDTF 193 (230)
Q Consensus 171 i~ls~~~~~~~~~~~~~~G~~~~ 193 (230)
|..|+.-+.+.+....+.|+|.+
T Consensus 278 ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 278 LENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp EEEESSCCHHHHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 66788888999999999999855
No 434
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=26.78 E-value=1.3e+02 Score=25.57 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=37.7
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC---eEE-EEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA---GVT-LVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~---~v~-~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+|.-||-++......++.++..|. ++. ...|..+.+..+.. ....||+|++|
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~-----------------------~~~~fD~Ii~D 292 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-----------------------HHLTYDIIIID 292 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-----------------------TTCCEEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH-----------------------hCCCccEEEEC
Confidence 3789999999888888888887775 343 44566555443321 13479999998
Q ss_pred cC
Q 026988 141 CQ 142 (230)
Q Consensus 141 ~~ 142 (230)
--
T Consensus 293 PP 294 (385)
T 2b78_A 293 PP 294 (385)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 435
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=26.70 E-value=2.2e+02 Score=22.00 Aligned_cols=40 Identities=8% Similarity=0.181 Sum_probs=29.1
Q ss_pred CceEEEEecCCChHhHHHHHHcCCCeeEe-----CCCCHHHHHHH
Q 026988 167 SIPIIAFTALVTADNERECFNSGMDTFLN-----KPAQEHLLAAA 206 (230)
Q Consensus 167 ~~pii~ls~~~~~~~~~~~~~~G~~~~L~-----KP~~~~~L~~~ 206 (230)
.+||+.-.+-..++........|+|+++. |+-++.+..+.
T Consensus 170 ~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~ 214 (219)
T 2h6r_A 170 DVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRE 214 (219)
T ss_dssp TCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHH
T ss_pred CCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHH
Confidence 57888877777788888889999998865 55555544433
No 436
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=26.68 E-value=2.1e+02 Score=21.68 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=39.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCC--eEEE-EcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGA--GVTL-VKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
+.+|..+|-++......++.+...|. ++.. ..+..+.+.... ....||+|++|
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------------------------~~~~fD~I~~~ 133 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE------------------------LYPLFDVLFID 133 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT------------------------TSCCEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc------------------------cCCCccEEEEC
Confidence 34778888888877777777776664 2332 234433222220 03469999999
Q ss_pred cCCCCCCHHHHHHHHH
Q 026988 141 CQMGSMDGCKATRVIR 156 (230)
Q Consensus 141 ~~mp~~dg~~l~~~lr 156 (230)
...+ +-.++++.+.
T Consensus 134 ~~~~--~~~~~l~~~~ 147 (233)
T 2gpy_A 134 AAKG--QYRRFFDMYS 147 (233)
T ss_dssp GGGS--CHHHHHHHHG
T ss_pred CCHH--HHHHHHHHHH
Confidence 7654 3344555554
No 437
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=26.64 E-value=2.2e+02 Score=22.70 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEe
Q 026988 95 KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFT 174 (230)
Q Consensus 95 ~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls 174 (230)
....+++..+. ....|+|.+-.. .+++--.+++.++ .... .++|||+++
T Consensus 20 ~~t~~~~~~l~-------------------------~~GaD~ielG~S-~Gvt~~~~~~~v~----~ir~-~~~Pivlm~ 68 (240)
T 1viz_A 20 DLPDEQLEILC-------------------------ESGTDAVIIGGS-DGVTEDNVLRMMS----KVRR-FLVPCVLEV 68 (240)
T ss_dssp CCCHHHHHHHH-------------------------TSCCSEEEECC-----CHHHHHHHHH----HHTT-SSSCEEEEC
T ss_pred cccHHHHHHHH-------------------------HcCCCEEEECCC-CCCCHHHHHHHHH----HhhC-cCCCEEEec
Q ss_pred cCCChHhHHHHHHcCCCeeEe
Q 026988 175 ALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 175 ~~~~~~~~~~~~~~G~~~~L~ 195 (230)
...+.- ..|++.||.
T Consensus 69 y~~n~i------~~G~dg~ii 83 (240)
T 1viz_A 69 SAIEAI------VPGFDLYFI 83 (240)
T ss_dssp SCGGGC------CSCCSEEEE
T ss_pred Cccccc------cCCCCEEEE
No 438
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=26.64 E-value=3.3e+02 Score=23.98 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 148 GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 148 g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
.++++..+.+.- ....+|||.-.+-.+..++..++.+|++....
T Consensus 317 ~~~~l~~v~~~~----~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 317 QISAIANVAAAL----EGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHHH----TTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHh----ccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 455555555321 12369999998988999999999999997654
No 439
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=26.64 E-value=2.3e+02 Score=22.09 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q 026988 196 KPAQEHLLAAAIVETIA 212 (230)
Q Consensus 196 KP~~~~~L~~~l~~~l~ 212 (230)
-.++.+.-.+.+..++.
T Consensus 166 ~~~~~~~~~~~~~~~l~ 182 (287)
T 3bbl_A 166 GEGTFEVGRAMTLHLLD 182 (287)
T ss_dssp CCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 34566666666777765
No 440
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=26.59 E-value=2.1e+02 Score=21.77 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~ 103 (230)
+.+.+|||.+-.--+-..+.+.|.+.|++|..+....+.++.
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~ 50 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH 50 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 456789999988888888888888889988876554444443
No 441
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=26.47 E-value=76 Score=24.71 Aligned_cols=54 Identities=15% Similarity=0.004 Sum_probs=36.4
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCCeEEEE-cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEecCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGAGVTLV-KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMDCQM 143 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D~~m 143 (230)
.++..||-++......++.....+..+... .++.+....+ ....||.|+.|...
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-------------------------~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-------------------------PDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-------------------------CTTCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc-------------------------cccCCceEEEeeee
Confidence 367888988888888888877777665543 3443332222 25579999999754
No 442
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=26.45 E-value=2.2e+02 Score=21.79 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=36.7
Q ss_pred Ccc-EEEEecCCCCCC---HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 133 HYD-LILMDCQMGSMD---GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 133 ~~d-lvl~D~~mp~~d---g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..| +.+.|....... .+++++.+++ . ..+|+++.....+.+....+.++|++.+..
T Consensus 46 G~d~i~v~~~~~~~~~~~~~~~~i~~i~~---~----~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 46 GADEIAILDITAAPEGRATFIDSVKRVAE---A----VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp TCSCEEEEECCCCTTTHHHHHHHHHHHHH---H----CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEEeCCccccCCcccHHHHHHHHH---h----cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 456 445554432222 3555666653 1 358999888878888888999999997763
No 443
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=26.44 E-value=2.4e+02 Score=22.21 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC-cHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD-GEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~-~~~al~~l~ 105 (230)
+.+..+||.+-..-+-..+.+.|.+.|++|..... ..+..+.+.
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~ 70 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVV 70 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence 45678889898888888888888889999876543 444444443
No 444
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=26.39 E-value=1.2e+02 Score=25.22 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=22.3
Q ss_pred CCcEEEEEecc----HHHHHHHHHHHHhcCCeEEEEcC
Q 026988 63 EGLSVLLVEDQ----AVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 63 ~~~~iLiVdd~----~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
..||||++-.. -.-...+.+.|.+.|++|.++..
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 34799888532 11123467778888999887765
No 445
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=26.33 E-value=2.4e+02 Score=22.34 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+..+||.+-..-+-..+.+.|.+.|++|..+....+.++.+.
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 69 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVA 69 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34568899998888888888888889999887765555555443
No 446
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=26.32 E-value=93 Score=25.72 Aligned_cols=51 Identities=6% Similarity=0.079 Sum_probs=34.5
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCC----CCHHHHHHHHHHHHHhccC
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKP----AQEHLLAAAIVETIARKSH 216 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP----~~~~~L~~~l~~~l~~~~~ 216 (230)
..+|+|++....+..........+-.+++..+ .+.+.|.+++.+++.....
T Consensus 305 ~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~ 359 (391)
T 3tsa_A 305 LGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGF 359 (391)
T ss_dssp TTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHH
T ss_pred hCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHH
Confidence 35899988554444444444444445677777 8999999999999875433
No 447
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=26.32 E-value=95 Score=23.06 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=48.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeE-EEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGV-TLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
....+|++++|+-.....+.+.|... +.+ -..-+|......+..... ......||+|++-
T Consensus 32 ~~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~------------------~~~~~~pd~vvi~ 92 (214)
T 2hsj_A 32 VVEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDA------------------HLYGGAVDKIFLL 92 (214)
T ss_dssp SSCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGG------------------GCCCSCCCEEEEE
T ss_pred cccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhH------------------HHHhcCCCEEEEE
Confidence 34569999999987755555666432 344 334455554444431100 0123478999986
Q ss_pred cCCCCC----CH-------HHHHHHHHHhhhhhhcCCCceEEEEecCC
Q 026988 141 CQMGSM----DG-------CKATRVIRRLEAEAETGQSIPIIAFTALV 177 (230)
Q Consensus 141 ~~mp~~----dg-------~~l~~~lr~~~~~~~~~~~~pii~ls~~~ 177 (230)
+..-+. +- -++++.+++ ..+..+|++++...
T Consensus 93 ~G~ND~~~~~~~~~~~~~l~~~i~~l~~------~~p~~~iil~~~~p 134 (214)
T 2hsj_A 93 IGTNDIGKDVPVNEALNNLEAIIQSVAR------DYPLTEIKLLSILP 134 (214)
T ss_dssp CCHHHHHTTCCHHHHHHHHHHHHHHHHH------HCTTCEEEEECCCC
T ss_pred EecCcCCcCCCHHHHHHHHHHHHHHHHH------hCCCCeEEEEecCC
Confidence 543221 11 123444443 33557888887643
No 448
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=26.29 E-value=2.4e+02 Score=22.34 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+..+||.+-..-+=..+.+.|.+.|++|..+....+.++.+.
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 49 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELT 49 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 34567888888887878888888888999887765555555443
No 449
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=26.28 E-value=65 Score=24.08 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCeEE---EEcCcHHHH-HHHH
Q 026988 74 AVLQRIGIRMLKKLGAGVT---LVKDGEAAV-EAMT 105 (230)
Q Consensus 74 ~~~~~~l~~~L~~~g~~v~---~~~~~~~al-~~l~ 105 (230)
..+...+...|++.|+.+. .+.|..+++ +.+.
T Consensus 30 Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~ 65 (169)
T 1y5e_A 30 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVL 65 (169)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHH
T ss_pred cChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHH
Confidence 4566789999999998654 455555444 3444
No 450
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=26.26 E-value=1.4e+02 Score=24.22 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee------Ee-CCCCHHHHHHHHHHHHHhcc
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF------LN-KPAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~------L~-KP~~~~~L~~~l~~~l~~~~ 215 (230)
++.++.+++. ...++|||..-+-.+.++..+++..|++.+ +. -|.-..++.+.+...+....
T Consensus 229 ~~~i~~v~~~-----~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~g 297 (311)
T 1jub_A 229 LANVRAFYTR-----LKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKG 297 (311)
T ss_dssp HHHHHHHHTT-----SCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-----cCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 5566666641 223799999999999999999999999866 22 45445555566666665443
No 451
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=26.09 E-value=2.1e+02 Score=21.45 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=38.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAA 206 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~ 206 (230)
.+++|-+.+..| ++.+.++.+|+..+ .+.+ |-.+.-.+.+....+.+.|+|.. .-|....++.+.
T Consensus 35 G~~~iev~~~~~--~~~~~i~~ir~~~~-----~~~~-ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~ 99 (205)
T 1wa3_A 35 GVHLIEITFTVP--DADTVIKELSFLKE-----KGAI-IGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQF 99 (205)
T ss_dssp TCCEEEEETTST--THHHHHHHTHHHHH-----TTCE-EEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHH
T ss_pred CCCEEEEeCCCh--hHHHHHHHHHHHCC-----CCcE-EEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHH
Confidence 466766655544 56677888876432 1233 33323345677888899999955 667555444443
No 452
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=26.03 E-value=2.4e+02 Score=22.14 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCC---eEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcc-cccCCCCccEEEEecCCCCCCHHHH
Q 026988 76 LQRIGIRMLKKLGA---GVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNL-ETHNSPHYDLILMDCQMGSMDGCKA 151 (230)
Q Consensus 76 ~~~~l~~~L~~~g~---~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dlvl~D~~mp~~dg~~l 151 (230)
....+.+.+++.+. ++...+--.+.+..++....... ..+........+ .......++.+-+++.+-. -++
T Consensus 128 ~~~~v~~~l~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~--~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ 202 (252)
T 3qvq_A 128 TIAASVEVLKQHWPQDLPLLFSSFNYFALVSAKALWPEIA--RGYNVSAIPSAWQERLEHLDCAGLHIHQSFFD---VQQ 202 (252)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEESCHHHHHHHHHHCTTSC--EEEECSSCCTTHHHHHHHHTCSEEEEEGGGCC---HHH
T ss_pred HHHHHHHHHHHhCcccCCEEEEeCCHHHHHHHHHHCCCCc--EEEEEecCchhHHHHHHHcCCeEEecchhhCC---HHH
Confidence 44566677776543 46666666677777764311100 000000000110 0011113445555544321 345
Q ss_pred HHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHH
Q 026988 152 TRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVE 209 (230)
Q Consensus 152 ~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~ 209 (230)
++.+++ ..++|.+.|- .+++....+++.|++++++- .+..+.+.+.+
T Consensus 203 v~~~~~--------~G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD--~P~~~~~~l~~ 249 (252)
T 3qvq_A 203 VSDIKA--------AGYKVLAFTI-NDESLALKLYNQGLDAVFSD--YPQKIQSAIDS 249 (252)
T ss_dssp HHHHHH--------TTCEEEEECC-CCHHHHHHHHHTTCCEEEES--SHHHHHHHHHH
T ss_pred HHHHHH--------CCCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHHHHH
Confidence 666653 3578999986 56778889999999999984 46666655543
No 453
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=25.99 E-value=1.9e+02 Score=21.57 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=37.7
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+++ +|-++...... ..|...+..+..+.+..+++.+|. ....|+++.|
T Consensus 104 dL~g-~igv~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~L~-------------------------~GrvDa~i~~ 152 (232)
T 3i6v_A 104 DLSG-IVAAQTATIQA-----GYIAESGATLVEFATPEETIAAVR-------------------------NGEADAVFAD 152 (232)
T ss_dssp CTTS-EEEEETTSHHH-----HHHHHSSSEEEEESSHHHHHHHHH-------------------------TTSSSEEEEE
T ss_pred HhCC-CEEEecCchHH-----HHHHhcCCeEEEeCCHHHHHHHHH-------------------------cCCcCEEEEC
Confidence 3567 88777766432 333334789999999999999997 7789999998
Q ss_pred c
Q 026988 141 C 141 (230)
Q Consensus 141 ~ 141 (230)
.
T Consensus 153 ~ 153 (232)
T 3i6v_A 153 R 153 (232)
T ss_dssp H
T ss_pred h
Confidence 4
No 454
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=25.91 E-value=2e+02 Score=22.71 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=20.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAA 100 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 100 (230)
+.+..+||.+-..-+-..+.+.|.+.|++|..+....+.
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~ 64 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAG 64 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 344455555655555555555555566665554443333
No 455
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=25.90 E-value=34 Score=26.93 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=43.4
Q ss_pred CcccccCCCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHH
Q 026988 124 SNLETHNSPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLL 203 (230)
Q Consensus 124 ~~~~~~~~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L 203 (230)
.+++......||+||...... .-+..++|++ ..+|++++....+.....+.+.. .-..+-|+-..+++
T Consensus 50 ~n~E~i~~l~PDlIi~~~~~~---~~~~~~~L~~--------~gipvv~~~~~~~~~~~~~~i~~-lg~~~g~~~~A~~l 117 (255)
T 3md9_A 50 LNAEGILAMKPTMLLVSELAQ---PSLVLTQIAS--------SGVNVVTVPGQTTPESVAMKINA-VATALHQTEKGQKL 117 (255)
T ss_dssp CCHHHHHTTCCSEEEEETTCS---CHHHHHHHHH--------TTCEEEEECCCCSHHHHHHHHHH-HHHHHTCHHHHHHH
T ss_pred CCHHHHHccCCCEEEEcCCcC---chhHHHHHHH--------cCCcEEEeCCCCCHHHHHHHHHH-HHHHhCCHHHHHHH
Confidence 445555678899999876532 2345666664 23789988643344433333221 11234455455666
Q ss_pred HHHHHHHHHh
Q 026988 204 AAAIVETIAR 213 (230)
Q Consensus 204 ~~~l~~~l~~ 213 (230)
.+.++..+..
T Consensus 118 ~~~~~~~~~~ 127 (255)
T 3md9_A 118 IEDYQQRLAA 127 (255)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 456
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=25.82 E-value=2.5e+02 Score=22.46 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=33.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHH
Q 026988 133 HYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIA 212 (230)
Q Consensus 133 ~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~ 212 (230)
.+|+|++ -+.|| .+++..+... .....+||+-+.. |-.+|+. .+.++++.+++..++.
T Consensus 35 ~~D~vv~----lGGDG-T~l~aa~~~~---~~~~~~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 35 EPEIVIS----IGGDG-TFLSAFHQYE---ERLDEIAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAK 92 (272)
T ss_dssp SCSEEEE----EESHH-HHHHHHHHTG---GGTTTCEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHT
T ss_pred CCCEEEE----EcCcH-HHHHHHHHHh---hcCCCCCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHc
Confidence 4788776 25666 2333333321 0113588887732 4445555 4567777778877776
Q ss_pred h
Q 026988 213 R 213 (230)
Q Consensus 213 ~ 213 (230)
.
T Consensus 93 g 93 (272)
T 2i2c_A 93 G 93 (272)
T ss_dssp T
T ss_pred C
Confidence 5
No 457
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.81 E-value=1.9e+02 Score=22.56 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCeEEEEcC
Q 026988 78 RIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 78 ~~l~~~L~~~g~~v~~~~~ 96 (230)
..+.+.+++.||.+..+..
T Consensus 28 ~gi~~~a~~~g~~~~~~~~ 46 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANT 46 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 3455666667777666543
No 458
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.79 E-value=2e+02 Score=22.44 Aligned_cols=17 Identities=6% Similarity=-0.338 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHHH
Q 026988 196 KPAQEHLLAAAIVETIA 212 (230)
Q Consensus 196 KP~~~~~L~~~l~~~l~ 212 (230)
-+++.+.-...+..++.
T Consensus 166 ~~~~~~~~~~~~~~~l~ 182 (290)
T 3clk_A 166 GDYSYTSGEQAMKAFGK 182 (290)
T ss_dssp CCSSHHHHHHHHHHHCT
T ss_pred CCCChhhHHHHHHHHhc
Confidence 34555655566666654
No 459
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=25.78 E-value=1.8e+02 Score=20.83 Aligned_cols=25 Identities=24% Similarity=0.084 Sum_probs=21.0
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcCC
Q 026988 65 LSVLLVEDQAVLQRIGIRMLKKLGA 89 (230)
Q Consensus 65 ~~iLiVdd~~~~~~~l~~~L~~~g~ 89 (230)
.+|..+|-++......++.+...|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~ 79 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKA 79 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 4889999999998888888887765
No 460
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=25.72 E-value=2.3e+02 Score=21.93 Aligned_cols=38 Identities=8% Similarity=-0.022 Sum_probs=29.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEA 99 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 99 (230)
+.+.++||.+-..-+-..+.+.|.+.|++|..+....+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~ 42 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE 42 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34668899998888888888888889999887654433
No 461
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.50 E-value=2.6e+02 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=25.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTAD 180 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~ 180 (230)
...||+|++... +.+...+++.+++..- ....+|++......+..
T Consensus 192 ~~~~d~v~~~~~--~~~a~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 192 DAKPDAMFVFVP--AGQGGNFMKQFAERGL---DKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HHCCSEEEEECC--TTCHHHHHHHHHHTTG---GGTTCEEEEETTTTCHH
T ss_pred hcCCCEEEEecc--chHHHHHHHHHHHcCC---CcCCceEEecCcccCHH
Confidence 346899998643 3377778888875321 11126666554334433
No 462
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.49 E-value=3.3e+02 Score=23.59 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=21.3
Q ss_pred CCcEEEEEecc---HHHHHHHHHHHHhcCCeEEEEcC
Q 026988 63 EGLSVLLVEDQ---AVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 63 ~~~~iLiVdd~---~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
.+.+|+++|-| +.....+..+-+..|+.+.....
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~ 161 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD 161 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCC
Confidence 46789999876 44434455555556777766543
No 463
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.41 E-value=2.4e+02 Score=21.91 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCeEEEEcC
Q 026988 77 QRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~~ 96 (230)
...+.+.+++.||.+..+.+
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~ 39 (283)
T 2ioy_A 20 KNGAEEKAKELGYKIIVEDS 39 (283)
T ss_dssp HHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHhcCcEEEEecC
Confidence 34456677778998877643
No 464
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=25.40 E-value=1.3e+02 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=16.7
Q ss_pred CCCccEEEEecCCCCC--C---HHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSM--D---GCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~--d---g~~l~~~lr~ 157 (230)
...||+|++|...|.. + -.++++.+++
T Consensus 192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~ 223 (334)
T 1xj5_A 192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVAR 223 (334)
T ss_dssp TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHH
T ss_pred CCCccEEEECCCCccCcchhhhHHHHHHHHHH
Confidence 3579999999865432 1 1356666654
No 465
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=25.33 E-value=1.9e+02 Score=24.62 Aligned_cols=24 Identities=13% Similarity=-0.121 Sum_probs=21.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKL 87 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~ 87 (230)
..+|+.+|-++.....+++.++..
T Consensus 71 ~~~V~avDi~~~av~~a~~N~~~n 94 (378)
T 2dul_A 71 AEEVWLNDISEDAYELMKRNVMLN 94 (378)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHh
Confidence 357999999999999999999887
No 466
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=25.29 E-value=2.6e+02 Score=22.21 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-EeCCCCHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-LNKPAQEHLLAAAIVE 209 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-L~KP~~~~~L~~~l~~ 209 (230)
...+|.|++|+.-...+--++-..++.. .....++++=+...+...+...+..|++++ ++|--+.+++...+..
T Consensus 38 ~~gaD~v~lDlEd~p~~~~~a~~~~~~~-----~~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 38 LAGFDWLVLDGEHAPNDISTFIPQLMAL-----KGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp TSCCSEEEEESSSSSCCHHHHHHHHHHT-----TTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHH-----HhCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHH
Confidence 5679999999976544433444444432 123466777677778888899999999885 5555677887655443
No 467
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=25.22 E-value=2.3e+02 Score=21.70 Aligned_cols=70 Identities=7% Similarity=-0.023 Sum_probs=46.9
Q ss_pred CccEEEEecCCCC-CC-HHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCee-----EeCCCCHHHHHH
Q 026988 133 HYDLILMDCQMGS-MD-GCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTF-----LNKPAQEHLLAA 205 (230)
Q Consensus 133 ~~dlvl~D~~mp~-~d-g~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~-----L~KP~~~~~L~~ 205 (230)
..|.|-+ .|. .- |.+.++.++. ..+++|++.+-+- +.++....+++|++.+ +.+ -+++++.+
T Consensus 124 Gad~v~~---fpa~~~gG~~~lk~l~~------~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~ 192 (207)
T 2yw3_A 124 GLSALKF---FPAEPFQGVRVLRAYAE------VFPEVRFLPTGGI-KEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRA 192 (207)
T ss_dssp TCCEEEE---TTTTTTTHHHHHHHHHH------HCTTCEEEEBSSC-CGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHH
T ss_pred CCCEEEE---ecCccccCHHHHHHHHh------hCCCCcEEEeCCC-CHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHH
Confidence 4676666 443 23 8888888875 2346898876654 5788999999998865 344 45666776
Q ss_pred HHHHHHHh
Q 026988 206 AIVETIAR 213 (230)
Q Consensus 206 ~l~~~l~~ 213 (230)
..+++...
T Consensus 193 ~a~~~~~~ 200 (207)
T 2yw3_A 193 KVRAAKAL 200 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 468
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=25.19 E-value=91 Score=25.16 Aligned_cols=33 Identities=12% Similarity=-0.071 Sum_probs=22.8
Q ss_pred cccCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEE
Q 026988 59 KKVLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTL 93 (230)
Q Consensus 59 ~~~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~ 93 (230)
..++.|++|||--..+ ...+.+.|++.|+.+..
T Consensus 28 ~~pL~G~~VlvtR~~~--~~~l~~~L~~~G~~v~~ 60 (286)
T 3d8t_A 28 GIDPFTMRIAYAGLRR--KEEFKALAEKLGFTPLL 60 (286)
T ss_dssp -----CCEEEECCSSC--HHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCEEEEeCCCc--hHHHHHHHHHCCCeEEE
Confidence 3457888999887665 68899999999987654
No 469
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=25.10 E-value=2.3e+02 Score=21.52 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEA 103 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~ 103 (230)
+.+.+|||.+-.--+-..+.+.|.+.|++|..+....+.++.
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~ 46 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKA 46 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence 345678888888888788888888889988776554444433
No 470
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=25.07 E-value=2.5e+02 Score=22.11 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
+.+..+||.+-..-+-..+.+.|.+.|++|..+....+.++.+
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~ 64 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAA 64 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3456899999888888888888888999988776555544443
No 471
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=25.06 E-value=93 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.3
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
...+.+++||+-....-+-+..+|...|..|+++++-.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t 194 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT 194 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 46788999999988877889999999999999887543
No 472
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=25.00 E-value=2.4e+02 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCeEEEEc
Q 026988 77 QRIGIRMLKKLGAGVTLVK 95 (230)
Q Consensus 77 ~~~l~~~L~~~g~~v~~~~ 95 (230)
...+.+.+++.||.+..+.
T Consensus 34 ~~gi~~~a~~~g~~~~~~~ 52 (298)
T 3tb6_A 34 IRGIESYLSEQGYSMLLTS 52 (298)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3445555666666665554
No 473
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=24.89 E-value=2.3e+02 Score=21.65 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=20.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKD 96 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~ 96 (230)
.+.+|||.+-.--+-..+.+.|.+.|++|..+..
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r 45 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADL 45 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 3456666666666666666666666666655543
No 474
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=24.76 E-value=98 Score=25.81 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=31.9
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
...+.+++||+-....-+-+..+|...|..|+++++-.
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 199 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT 199 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc
Confidence 46788999999998777888999999999999986543
No 475
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=24.65 E-value=2.5e+02 Score=21.98 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
+.+.++||.+-.--+-..+.+.|.+.|++|..+....+.++.+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL 49 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4567899999888888888888888999988776555544444
No 476
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=24.65 E-value=3.2e+02 Score=23.17 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred eEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 169 PIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 169 pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
|||.-.+-.+..++..++.+|++.+..
T Consensus 201 PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 201 SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 899888888899999999999987643
No 477
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=24.49 E-value=78 Score=23.97 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCeEE---EEcCcHHHHH-HHH
Q 026988 75 VLQRIGIRMLKKLGAGVT---LVKDGEAAVE-AMT 105 (230)
Q Consensus 75 ~~~~~l~~~L~~~g~~v~---~~~~~~~al~-~l~ 105 (230)
.+...+..+|+++|+.+. .+.|..+++. .+.
T Consensus 40 sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~ 74 (178)
T 2pjk_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFT 74 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHH
Confidence 355788999999999654 4556555443 444
No 478
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=24.42 E-value=38 Score=27.28 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=24.0
Q ss_pred cEEEEEeccHH--------HHHHHHHHHHhcCCeEEEEcCc
Q 026988 65 LSVLLVEDQAV--------LQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 65 ~~iLiVdd~~~--------~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
++|+|+.+... ....+.+.+.+.|+++..+...
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 57888876431 3356788889999999888654
No 479
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=24.34 E-value=1e+02 Score=22.33 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=23.4
Q ss_pred CCCcEEEEEeccH-HHHHHHHHHHHhcCCeEE-EEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQA-VLQRIGIRMLKKLGAGVT-LVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~-~~~~~l~~~L~~~g~~v~-~~~~~~~al~~l~ 105 (230)
.+.++|-|||.|. ..-+.+.+.|. ..+.+. ...+.+++.+.+.
T Consensus 8 ~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~ 52 (156)
T 3cni_A 8 TVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVK 52 (156)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHH
Confidence 4567888888543 33344445555 323221 1358888888887
No 480
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=24.29 E-value=1.1e+02 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=27.0
Q ss_pred CCCcEEEEEeccH--HHHHHHHHHHHhcCCeEEEE
Q 026988 62 LEGLSVLLVEDQA--VLQRIGIRMLKKLGAGVTLV 94 (230)
Q Consensus 62 ~~~~~iLiVdd~~--~~~~~l~~~L~~~g~~v~~~ 94 (230)
+.+|+|.|--|+. .....+.+.|++.||+|.-+
T Consensus 19 ~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 19 PGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 4558999888886 67778999999999988755
No 481
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=24.27 E-value=2.5e+02 Score=21.82 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=38.5
Q ss_pred CccEEEEecCCCCC-------CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEe
Q 026988 133 HYDLILMDCQMGSM-------DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLN 195 (230)
Q Consensus 133 ~~dlvl~D~~mp~~-------dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~ 195 (230)
..|.|++=...|+. .+++.++++|+.... .+.++||.+.-+-. .+....+.++|+|.++.
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~--~~~~~~I~v~GGI~-~~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE--RGLDPWIEVDGGLK-PNNTWQVLEAGANAIVA 200 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHH--HTCCCEEEEESSCC-TTTTHHHHHHTCCEEEE
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHh--cCCCCcEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 46777666555642 246667777765432 23467887766644 47788889999998754
No 482
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=24.10 E-value=51 Score=26.26 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=43.8
Q ss_pred cccccCCCCccEEEEecCCCC-C---CHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCe----eEeC
Q 026988 125 NLETHNSPHYDLILMDCQMGS-M---DGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDT----FLNK 196 (230)
Q Consensus 125 ~~~~~~~~~~dlvl~D~~mp~-~---dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~----~L~K 196 (230)
++.....-+||.|=+|-.+-. + ....+++.+-..- ....+.+ +..+-.+.+....+.+.|++. |+.|
T Consensus 180 sl~~L~~l~~d~iKiD~~~v~~~~~~~~~~~l~~ii~~~----~~~~~~v-iaeGVEt~~~~~~l~~lG~~~~QG~~~~~ 254 (268)
T 3hv8_A 180 PFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAEL----HEQQKLS-IVPFVESASVLATLWQAGATYIQGYYLQG 254 (268)
T ss_dssp TTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHH----HHTTCEE-EECCCCSHHHHHHHHHHTCSEECSTTTCC
T ss_pred HHHHHHhCCCCEEEECHHHHHhhhcChhHHHHHHHHHHH----HHcCCCE-EEEeeCCHHHHHHHHHcCCCEeccCeecC
Confidence 355555778999999965532 1 1223333332211 1123444 456777888888899999983 4778
Q ss_pred CCCHHH
Q 026988 197 PAQEHL 202 (230)
Q Consensus 197 P~~~~~ 202 (230)
|....+
T Consensus 255 P~~~~~ 260 (268)
T 3hv8_A 255 PSQAMD 260 (268)
T ss_dssp CBSSCC
T ss_pred CCcccc
Confidence 866543
No 483
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=24.09 E-value=2.1e+02 Score=21.17 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=34.3
Q ss_pred CcEEEEE----eccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHH
Q 026988 64 GLSVLLV----EDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAMTLM 107 (230)
Q Consensus 64 ~~~iLiV----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~ 107 (230)
.+|||++ +|.......|.+..-..++.+..+=+.+||-..|...
T Consensus 84 ~lrVLL~~VDv~d~~~~L~eL~~~c~~~~~TLiLawS~eEaa~Yle~~ 131 (146)
T 2a1i_A 84 ALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETY 131 (146)
T ss_dssp SEEEEEEECCSSSCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEEEEeCCChHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHHH
Confidence 3577755 4667777777777777889999999999999888643
No 484
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=24.05 E-value=2.7e+02 Score=21.99 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
+.+.+|||.+-.--+-..+.+.|.+.|++|..+....+.++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~ 64 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK 64 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55678999998888888888888889999887655444443
No 485
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=23.95 E-value=1e+02 Score=25.41 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=31.6
Q ss_pred cCCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCc
Q 026988 61 VLEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDG 97 (230)
Q Consensus 61 ~~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~ 97 (230)
...+.+++||+-....-+-+..+|...|..|+++++-
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 194 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF 194 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 4678899999998877788999999999999988753
No 486
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=23.92 E-value=1.6e+02 Score=19.29 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=29.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAV 101 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al 101 (230)
+...|++..............|...||++.....|-.++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W 93 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDEF 93 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHHH
Confidence 345777777777667788899999999888877776554
No 487
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=23.88 E-value=3.3e+02 Score=22.98 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 165 GQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 165 ~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
...+|+|++-...+.. ...+.| ..++..+ +.++|.+++..++..
T Consensus 318 a~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp GTTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred HhCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 3568888763222222 235667 5677776 899999999988864
No 488
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=23.87 E-value=2.4e+02 Score=22.06 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHH
Q 026988 62 LEGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVEAM 104 (230)
Q Consensus 62 ~~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 104 (230)
+.+.++||.+-..-+=..+.+.|.+.|++|..+.-..+.++.+
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~ 70 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKAL 70 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 4566788888887777788888888888877665544444433
No 489
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=23.69 E-value=1.2e+02 Score=24.68 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=14.9
Q ss_pred CCCccEEEEecCCCCC------CHHHHHHHHHH
Q 026988 131 SPHYDLILMDCQMGSM------DGCKATRVIRR 157 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~------dg~~l~~~lr~ 157 (230)
...||+|++|...|.. ...++++.+++
T Consensus 161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~ 193 (296)
T 1inl_A 161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYD 193 (296)
T ss_dssp SSCEEEEEEEC----------CCSHHHHHHHHH
T ss_pred CCCceEEEEcCCCcccCchhhhhHHHHHHHHHH
Confidence 3569999999765411 22456666654
No 490
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=23.69 E-value=82 Score=25.68 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=24.6
Q ss_pred CcEEEEEec-----cH---HHHHHHHHHHHhcCCeEEEEcCcH
Q 026988 64 GLSVLLVED-----QA---VLQRIGIRMLKKLGAGVTLVKDGE 98 (230)
Q Consensus 64 ~~~iLiVdd-----~~---~~~~~l~~~L~~~g~~v~~~~~~~ 98 (230)
.++|.|+-. .+ .....+.+.|++.||++..+...+
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 457887753 11 245677888899999999887543
No 491
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=23.65 E-value=1.6e+02 Score=25.07 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeE------eC-CCCHHHHHHHHHHHHHhcc
Q 026988 149 CKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFL------NK-PAQEHLLAAAIVETIARKS 215 (230)
Q Consensus 149 ~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L------~K-P~~~~~L~~~l~~~l~~~~ 215 (230)
++.+..+++. ....+|||..-+-.+.++..+++.+|++.+. .+ |.-..++.+.+...+....
T Consensus 285 ~~~v~~i~~~-----v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~~~G 353 (367)
T 3zwt_A 285 TQTIREMYAL-----TQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQG 353 (367)
T ss_dssp HHHHHHHHHH-----TTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----cCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 3666677652 2236999999999999999999999998764 22 5545566666666665543
No 492
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=23.64 E-value=3.1e+02 Score=22.97 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
..+|+|++-..... .+..+.|.. ++..+ +.++|.+++..++..
T Consensus 325 ~G~PvV~~~~~~~~---~e~v~~G~~-~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 325 LGKPVLVMRETTER---PEAVAAGTV-KLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp GTCCEEECCSSCSC---HHHHHHTSE-EECTT-CHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCcc---hHHHHcCce-EEcCC-CHHHHHHHHHHHHcC
Confidence 45788875222222 234566754 67654 899999999988864
No 493
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=23.61 E-value=3e+02 Score=22.49 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=37.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 131 SPHYDLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 131 ~~~~dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
...+|+|.+....| .++++.+++ ..++++... .+.+....+...|+|.++.-
T Consensus 94 ~~g~d~V~~~~g~p----~~~~~~l~~--------~gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 94 EAGIRVVETAGNDP----GEHIAEFRR--------HGVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp HTTCCEEEEEESCC----HHHHHHHHH--------TTCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred hcCCCEEEEcCCCc----HHHHHHHHH--------cCCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 34688999887665 577788874 146777543 34667778889999988873
No 494
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.57 E-value=3.2e+02 Score=23.64 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=64.4
Q ss_pred EEEEEeccHHHHHHHHHHHHh-cCCeEEEEc---CcHHHHH-HHHHHHHhcccccchhccccCCcccccCCCCccEEEEe
Q 026988 66 SVLLVEDQAVLQRIGIRMLKK-LGAGVTLVK---DGEAAVE-AMTLMINAAGKNHQIQNLHHGSNLETHNSPHYDLILMD 140 (230)
Q Consensus 66 ~iLiVdd~~~~~~~l~~~L~~-~g~~v~~~~---~~~~al~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~D 140 (230)
.+|+.+..-.=...+.+.+.. .+..+..++ .+...+. .+...... . ......++|+|
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~----~--------------~~~~~~iLfID 113 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQN----R--------------NAGRRTILFVD 113 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHH----H--------------HTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHh----h--------------hcCCCcEEEEe
Confidence 688888776666666666644 344444333 2222222 12111000 0 02346788888
Q ss_pred cCCCCCCH--H-HHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHHh
Q 026988 141 CQMGSMDG--C-KATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVETIAR 213 (230)
Q Consensus 141 ~~mp~~dg--~-~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~l~~ 213 (230)
-- ..++. . .++..+.. ..+.+|..|...........+..-+.-|..+|.+.+++...+...+..
T Consensus 114 EI-~~l~~~~q~~LL~~le~--------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 114 EV-HRFNKSQQDAFLPHIED--------GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TT-TCC------CCHHHHHT--------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred Ch-hhhCHHHHHHHHHHHhc--------CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 42 22221 1 23444431 335555555443333344555555667889999999999999998876
No 495
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=23.48 E-value=2.8e+02 Score=22.09 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCCcEEEEEeccHH--HHHHHHHHHHhcCCeEEEEcCcHHHHHHHH
Q 026988 62 LEGLSVLLVEDQAV--LQRIGIRMLKKLGAGVTLVKDGEAAVEAMT 105 (230)
Q Consensus 62 ~~~~~iLiVdd~~~--~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 105 (230)
+.+.++||.+-.-. +-..+.+.|.+.|++|..+....+..+.+.
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 74 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVE 74 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 56778889887643 667777788888999887765554444443
No 496
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=23.37 E-value=2.6e+02 Score=21.63 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCceEEEEecCCChHhHHHHHHcCCCeeEeC
Q 026988 166 QSIPIIAFTALVTADNERECFNSGMDTFLNK 196 (230)
Q Consensus 166 ~~~pii~ls~~~~~~~~~~~~~~G~~~~L~K 196 (230)
..+|+++.-+-.+.+....+++.|++..+.=
T Consensus 73 ~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 73 IDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4689999888888899999999999987653
No 497
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=23.33 E-value=1.4e+02 Score=19.92 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Q 026988 64 GLSVLLVEDQAVLQRIGIRMLKKLGAGVTLVKDGEAAVE 102 (230)
Q Consensus 64 ~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~ 102 (230)
...|+++...-.........|...||++.....|-.++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W~ 93 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWI 93 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHHH
Confidence 346777776666667888899999998888888877655
No 498
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=23.30 E-value=2.6e+02 Score=21.55 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcCCeEEEE--------cCcHHHHHHHHHHHHhcccccchhccccCCcccccCCCCc
Q 026988 63 EGLSVLLVEDQAVLQRIGIRMLKKLGAGVTLV--------KDGEAAVEAMTLMINAAGKNHQIQNLHHGSNLETHNSPHY 134 (230)
Q Consensus 63 ~~~~iLiVdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (230)
.+.+||++-.+.. +..+.+.|.+.|+.|..+ ....+..+.+. ...+
T Consensus 109 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~-------------------------~~~~ 162 (229)
T 3p9z_A 109 EKKSVLYLRAKEI-VSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALK-------------------------PKEK 162 (229)
T ss_dssp TTCEEEEEEESSC-SSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHS-------------------------CCTT
T ss_pred CCCEEEEECCccc-hHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHh-------------------------cCCC
Confidence 5678887765542 567888899899866433 12223333332 5578
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHhhhhhhcCCCceEEEEecCCChHhHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Q 026988 135 DLILMDCQMGSMDGCKATRVIRRLEAEAETGQSIPIIAFTALVTADNERECFNSGMDTFLNKPAQEHLLAAAIVET 210 (230)
Q Consensus 135 dlvl~D~~mp~~dg~~l~~~lr~~~~~~~~~~~~pii~ls~~~~~~~~~~~~~~G~~~~L~KP~~~~~L~~~l~~~ 210 (230)
|+|++= +.-.+-..+... .....++++.+. +.....+.+.|..-++.+..+.+.|.+.+..+
T Consensus 163 d~v~ft------S~s~v~~~~~~~----~~~~~~~~~aIG----~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 163 SILIFT------AISHAKAFLHYF----EFLENYTAISIG----NTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229)
T ss_dssp CEEEEC------SHHHHHHHHHHS----CCCTTCEEEESS----HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred eEEEEE------CHHHHHHHHHHh----CcccCCEEEEEC----HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHH
Confidence 888772 222221122211 112345565544 34555667778886677778899998888764
No 499
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=23.27 E-value=35 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCeEE---EEcCcHHHH-HHHH
Q 026988 76 LQRIGIRMLKKLGAGVT---LVKDGEAAV-EAMT 105 (230)
Q Consensus 76 ~~~~l~~~L~~~g~~v~---~~~~~~~al-~~l~ 105 (230)
+...+...|++.|+.+. .+.|..+++ +.+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~ 55 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAYELVPDEPPMIKKVLR 55 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHH
Confidence 55678899999998654 455554443 3344
No 500
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=23.24 E-value=1.7e+02 Score=23.54 Aligned_cols=37 Identities=3% Similarity=-0.075 Sum_probs=28.6
Q ss_pred ceEEEEecCC------ChHhHHHHHHcCCCeeEeCCCCHHHHH
Q 026988 168 IPIIAFTALV------TADNERECFNSGMDTFLNKPAQEHLLA 204 (230)
Q Consensus 168 ~pii~ls~~~------~~~~~~~~~~~G~~~~L~KP~~~~~L~ 204 (230)
+|+++++-++ -+.....+.++|++++|.--+..++..
T Consensus 89 ~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~ 131 (252)
T 3tha_A 89 KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD 131 (252)
T ss_dssp SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH
T ss_pred CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence 7999998644 345678889999999999877766633
Done!