BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026990
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V++E++ PAA G+Q+ D ++ A + LE +A G+ +PVV+MR
Sbjct: 268 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMAQVAEIRPGSVIPVVVMRDDKQ 326
Query: 208 INLAVTPRPW 217
+ L VT + +
Sbjct: 327 LTLQVTIQEY 336
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 43 LVDSEGFPR------TDIDIHLVRSERRRLAEL---RNDHKEITEKI 80
L +SE FP+ D+D L+RSER R+ R H+E+TE
Sbjct: 258 LAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESF 304
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 43 LVDSEGFPR------TDIDIHLVRSERRRLAEL---RNDHKEITEKI 80
L +SE FP+ D+D L+RSER R+ R H+E+TE
Sbjct: 258 LAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESF 304
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 247 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 305
Query: 208 INLAVTPRPW 217
+ L VT + +
Sbjct: 306 LTLQVTIQEY 315
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 242 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 300
Query: 208 INLAVTPRPW 217
+ L VT + +
Sbjct: 301 LTLQVTIQEY 310
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
+EI +L++K A E+D+ A DR+ Q N +D P + + + L
Sbjct: 404 SEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLG 463
Query: 68 EL---RNDHKEITEKINENIQLLH 88
L R + E TEK+ E I L+
Sbjct: 464 ALTQKRREALERTEKLLETIDQLY 487
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 22 ADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDI 56
AD++ ++++ + G G G LVD +G+ T+I +
Sbjct: 299 ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISV 333
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
G LK +I + KR+ D N DR +S GL G+ + GFPR D I SE
Sbjct: 140 GNELKIDITRVFWKRTX---DXN---DRALRSIVIGLGGS---ANGFPREDSFIITAASE 190
Query: 63 RRRLAELRNDHKEITEKINENIQLLHSARLV 93
+ L + K++ E++ + I L + R +
Sbjct: 191 VXAILALSENXKDLKERLGKIIVALDADRKI 221
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 152 ITDASPAAEDGLQLGDQVLKFGTVE 176
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 38 VLEDSPAAKEGLEEGDQILRVNNVD 62
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 152 ITDASPAAEDGLQLGDQVLKFGTVE 176
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 30 VLEDSPAAKEGLEEGDQILRVNNVD 54
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 152 ITDASPAAEDGLQLGDQVLKFGTVE 176
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 31 VLEDSPAAKEGLEEGDQILRVNNVD 55
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 142 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE 176
I++P I + S +AE GL++GDQ+++ V+
Sbjct: 38 IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD 72
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V++E++ PAA G+Q+ D ++ A + LE G+ +PVV+ R
Sbjct: 242 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETXDQVAEIRPGSVIPVVVXRDDKQ 300
Query: 208 INLAVTPRPW 217
+ L VT + +
Sbjct: 301 LTLQVTIQEY 310
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 142 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE 176
I++P I + S +AE GL++GDQ+++ V+
Sbjct: 24 IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD 58
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 205
V++ + S A++ GLQ GD+++K G L + R N G ++ + I RQG
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVD----GQPLTQWVTFVMLVRDNPGKSLALEIERQG 60
Query: 206 GLINLAVTP--RPWQGR--GLLGCHFRML 230
++L + P +P G+ G +G +++
Sbjct: 61 SPLSLTLIPESKPGNGKAIGFVGAEPKVI 89
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 205
V++ + S A++ GLQ GD+++K G L + R N G ++ + I RQG
Sbjct: 6 VLENVQPNSAASKAGLQAGDRIVKVD----GQPLTQWVTFVMLVRDNPGKSLALEIERQG 61
Query: 206 GLINLAVTP--RPWQGR--GLLGCHFRML 230
++L + P +P G+ G +G +++
Sbjct: 62 SPLSLTLIPESKPGNGKAIGFVGIEPKVI 90
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 152 ITDASPAAEDGLQLGDQVLKFGTVE 176
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 58 VLEDSPAAKEGLEEGDQILRVNNVD 82
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 152 ITDASPAAEDGLQLGDQVLKFGTVE 176
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 33 VLEDSPAAKEGLEEGDQILRVNNVD 57
>pdb|4F06|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2
Rpb_2270 In Complex With P- Hydroxybenzoic Acid
Length = 371
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 122 ASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQL 165
++++ AV +SP ++++ A +DE+T S AA DG +L
Sbjct: 251 STYHYAVSHDSPENKAFLALLQKGGAKLDEVTXTSVAAYDGARL 294
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 66 LAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPS 114
L + R H E+T + L A LVP+ T + GDDG + ++N +
Sbjct: 157 LVKNRQGHTEMT------VALAELANLVPITTICEMMGDDGNAMSKNET 199
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 66 LAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPS 114
L + R H E+T + L A LVP+ T + GDDG + ++N +
Sbjct: 157 LVKNRQGHTEMT------VALAELANLVPITTICEMMGDDGNAMSKNET 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,717,222
Number of Sequences: 62578
Number of extensions: 274421
Number of successful extensions: 688
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 41
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)