BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026990
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WTV5|PSMD9_RAT 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus
GN=Psmd9 PE=1 SV=1
Length = 222
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 25/221 (11%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
++I LM ++ +EA + A D L G G++ LVD EG+PR D+D++ VR+ R +
Sbjct: 21 SDIQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80
Query: 68 ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
L+NDHK + +++ E + LH A+D + + + N
Sbjct: 81 CLQNDHKALMKQVEEALHQLH----------ARDKEKQARD-------MAEAREEAMNRR 123
Query: 128 VPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLA 186
+ +SPA + + FA ++ I+ SPA+ GLQ+ D++++FG+V + L+ +
Sbjct: 124 LASDSPA-------LPKAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVG 176
Query: 187 AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
+ ++G + V+++R+G L +TP W G+GLLGC+
Sbjct: 177 TVVQHSEGKPLNVMVIRRGEKHQLRLTPTRWAGKGLLGCNI 217
>sp|Q9CR00|PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus
GN=Psmd9 PE=1 SV=1
Length = 222
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 25/221 (11%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
++I LM ++ +EA++ A D L G G++ LVD EG+PR D+D++ VR+ R +
Sbjct: 21 SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80
Query: 68 ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
L+NDHK + +++ E + LH A+D + + + N
Sbjct: 81 CLQNDHKALMKQVEEALHQLH----------ARDKEKQARD-------MAEAREEAMNRR 123
Query: 128 VPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLA 186
+ NSP ++ + FA ++ I+ SPA+ GLQ+ D++++FG+V + ++ +
Sbjct: 124 LASNSP-------VLPQAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVG 176
Query: 187 AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
+ ++G + V ++R+G L + P W G+GLLGC+
Sbjct: 177 TVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNI 217
>sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens
GN=PSMD9 PE=1 SV=3
Length = 223
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 36/227 (15%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
+++ LM ++ +EA + A D L G G++ LVD EG+PR+D+D++ VR+ R +
Sbjct: 21 SDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNII 80
Query: 68 ELRNDHKEITEKINENIQLLHS------ARLVPVPTSAKDSGDDGGSNNQNPSILGTVQS 121
L+NDHK + +++ E + LH+ AR + S G S +Q P
Sbjct: 81 CLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPP------- 133
Query: 122 ASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-N 180
R FA ++ I+ SPA+ GLQ+ D++++FG+V +
Sbjct: 134 ----------------------RAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQ 171
Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
L + + + ++G + V ++R+G L + P W G+GLLGC+
Sbjct: 172 SLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNI 218
>sp|Q3SZ19|PSMD9_BOVIN 26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus
GN=PSMD9 PE=1 SV=1
Length = 221
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 26/221 (11%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
+++ L+ ++ +EA + A + L G G++ LVD EG+PR D+D++ VR+ R +
Sbjct: 21 SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIV 80
Query: 68 ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
L+NDHK + +++ + + LH+ ++ + S +Q+ +
Sbjct: 81 CLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQGL------------ 128
Query: 128 VPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLA 186
SPA + FA ++ I+ SPA+ GLQ+ D++L+FG+V + L+ +
Sbjct: 129 ----SPA---------QAFAKVNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIG 175
Query: 187 AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
+ + ++G + V +MR+G L + P W G+GLLGC+
Sbjct: 176 SVVQHSEGKPLNVTVMRRGEKHQLRLVPTRWAGKGLLGCNI 216
>sp|Q552Y8|PSMD9_DICDI Probable 26S proteasome non-ATPase regulatory subunit 9
OS=Dictyostelium discoideum GN=psmD9 PE=2 SV=1
Length = 262
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 27/238 (11%)
Query: 10 IMSLMEKRSALEADMNAIIDRLSQSNGP--GLSGNLVDSEGFPRTDIDIHL-VRSERRRL 66
I +LM R LE ++ ++++ L +G GL G+ DSEG+P +++ + V+ R R+
Sbjct: 25 IKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFTDSEGYPSPHLELIIEVKKARSRI 84
Query: 67 AELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNN 126
A ++ND+K++ + I +++ LH + PT+ S NN + +
Sbjct: 85 AHIQNDYKQVMKDIEFHLEKLHKS-----PTNKNQSSSTFSINNTTSTSNNNNNNNEDEM 139
Query: 127 AVPR-------NSPAAMDVDV-IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV--- 175
+ + P ++V+V + PF ID +++ SP+ + L+ GD + +FGTV
Sbjct: 140 KIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKGDLIFQFGTVGPF 199
Query: 176 ----EAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 225
+ GDNL L+ +A R ++ A+ + + R +I+ ++ PR W G+GL+GC
Sbjct: 200 FEERQVGDNLNSNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPRKWSGQGLIGC 257
>sp|O94393|PSMD9_SCHPO Probable 26S proteasome regulatory subunit p27
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=nas2 PE=3 SV=1
Length = 213
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 43 LVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDS 102
L+ +GFPR+DID+ +R+ R + LRNDH+E+ ++I + ++ + S + +
Sbjct: 36 LLTEDGFPRSDIDVPSIRTARHEIITLRNDHRELEDQIKKVLEKVFSG----FSKESLAA 91
Query: 103 GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIR-RPFAVIDEITDASPAAED 161
D+ + + + + N+ + R+ ++ R +PF V+D + SPA E
Sbjct: 92 NDETKLAQEADPLNFNAANYNMNDIISRSK-------ILGRVKPFCVVDSVAVESPAQEA 144
Query: 162 GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR------QGGLINLAVTPR 215
GL +GD+++ V + L L N + V+++R L+ L +TP
Sbjct: 145 GLCIGDELVHVQNVTS----LSELPTFISNNVNKTLDVLLIRGYSADGSTNLVELKLTPH 200
Query: 216 PWQGRGLLGCHFR 228
WQG GLLGCH R
Sbjct: 201 KWQGPGLLGCHLR 213
>sp|P40555|PSMD9_YEAST Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NAS2 PE=1
SV=1
Length = 220
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%)
Query: 13 LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRND 72
LM ++ +E + A L Q G G+ LV +G+PR+D+D+ V R+ + L+ND
Sbjct: 34 LMVLKTDIETQLEAYFSVLEQQ-GIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNMLKND 92
Query: 73 HKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNS 132
+N +Q H S D NN + +I T+
Sbjct: 93 -------LNHLLQRSHVLLNQHFDNMNVKSNQDARRNNDDQAIQYTI------------- 132
Query: 133 PAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN-LLERLAAEGRK 191
PFA I E+ SP+ + +++ D+++ G V A ++ L+ + K
Sbjct: 133 ------------PFAFISEVVPGSPSDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMK 180
Query: 192 NQGNAVPVVIMRQGGLINLAVTP-RPWQGRGLLGCHFRML 230
N+ +PV+++R+G ++ ++TP R W GRGLLGC + L
Sbjct: 181 NEDRPLPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220
>sp|Q10920|PSMD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9
OS=Caenorhabditis elegans GN=C44B7.1 PE=1 SV=2
Length = 197
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 13 LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRND 72
L+++R L+ + ++ L ++N + L+D+EG+P ID++ VR R L LRND
Sbjct: 10 LLQQRDELDGKIKELMLVL-ETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLICLRND 68
Query: 73 HKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNS 132
+TEKI ++ N+N + G + S V R S
Sbjct: 69 RAALTEKIVVEME------------------------NENKEVSGQT-ATSEEKPVHRTS 103
Query: 133 PAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRK 191
PF I + + SPA G + D ++++G + G+ N ++ +A ++
Sbjct: 104 ----------NEPFVKISSVVELSPADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQ 153
Query: 192 NQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
++ + V ++R+ + L + P+ W G GLLGC+
Sbjct: 154 SEDKIIRVTVIRENRPVRLEICPKKWSGPGLLGCNI 189
>sp|E1V4H2|DEGPL_HALED Probable periplasmic serine endoprotease DegP-like OS=Halomonas
elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 /
NCIMB 2198 / 1H9) GN=mucD PE=3 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 147 AVIDEITDASPAAEDGLQLGDQVLKF-GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG 205
A+I ++ PAA DGL+ GD VL+ G + L RL GR + GN V + ++R G
Sbjct: 297 ALIADLDPDGPAARDGLKAGDVVLEVDGQTVDSSSALPRLI--GRVSPGNDVELKVLRNG 354
Query: 206 GLINLAVTPRPW 217
N+ VT W
Sbjct: 355 EHRNVTVTVGDW 366
>sp|Q1KKS3|PDE11_TAKRU Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Takifugu
rubripes GN=pde11a PE=3 SV=1
Length = 903
Score = 34.3 bits (77), Expect = 0.81, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 16 KRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKE 75
+RS L+ +AI DR + PGL +D P + + L + + + ++ N ++
Sbjct: 799 ERSELKLTPSAIFDRNRKDELPGLQLEWIDGICAPLYETLVKL-NPKLQPMVDMINANRV 857
Query: 76 ITEKINENIQLLHSARLVPVPTSAKDSGDDGG----SNNQNPS 114
E++++ Q H A + P SA + + GG SNN P+
Sbjct: 858 KWEELDKKRQHDHGASVPASPCSAAEGSETGGVPCCSNNTPPT 900
>sp|Q97EB3|FTHS_CLOAB Formate--tetrahydrofolate ligase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=fhs PE=3 SV=1
Length = 556
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 35/209 (16%)
Query: 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
G +LK + ++ KR DMN DR +S GL G + GFPR D + V SE
Sbjct: 151 GNSLKIDQRRIVFKRVM---DMN---DRALRSIVVGLGGKV---NGFPREDGFMITVASE 201
Query: 63 RRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGG-----SNNQNPSILG 117
+ L ND ++ E++ ++L + L P +D +G + P+++
Sbjct: 202 IMAILCLANDLMDLKERMG---KILIAYDLDGNPVYCRDLKVEGAMAMLMKDAMKPNLVQ 258
Query: 118 TVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLK---FGT 174
T++ N+PA +I PFA I ++ A + L+LGD V+ FG
Sbjct: 259 TLE----------NTPA-----IIHGGPFANIAHGCNSILATKMALKLGDYVITEAGFGA 303
Query: 175 VEAGDNLLERLAAEGRKNQGNAVPVVIMR 203
+ L+ G N V V +R
Sbjct: 304 DLGAEKFLDIKCRYGNLNPDCVVLVATIR 332
>sp|O67776|Y1964_AQUAE Putative zinc metalloprotease aq_1964 OS=Aquifex aeolicus (strain
VF5) GN=aq_1964 PE=3 SV=1
Length = 429
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V+ + SPA + G++ GD +L+ + N L E RK+QG A+ + I+R G +
Sbjct: 210 VVGGVKKGSPADQVGIKPGDLILEVNGKKI--NTWYELVEEVRKSQGKAIKLKILRNGKM 267
Query: 208 INLAVTP 214
I + P
Sbjct: 268 IEKELIP 274
>sp|O83609|Y600_TREPA Putative zinc metalloprotease TP_0600 OS=Treponema pallidum (strain
Nichols) GN=TP_0600 PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 145 PFAVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIM 202
P V D +D SPA GLQ GD +L+ G + ++ + ++ ++ A+P VI
Sbjct: 137 PVYVYDS-SDNSPARRVGLQDGDTILRIGDQPIRYFSDIQKIVSQHAQR----ALPFVIE 191
Query: 203 RQGGLINLAVTP 214
R+G L+++ +TP
Sbjct: 192 RRGQLMHVTITP 203
>sp|P0A5L6|NADE_MYCTU Glutamine-dependent NAD(+) synthetase OS=Mycobacterium tuberculosis
GN=nadE PE=1 SV=1
Length = 679
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 43 LVDSEGFPR------TDIDIHLVRSERRRLAEL---RNDHKEITEKI 80
L +SE FP+ D+D L+RSER R+ R H+E+TE
Sbjct: 257 LAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESF 303
>sp|P0A5L7|NADE_MYCBO Glutamine-dependent NAD(+) synthetase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=nadE PE=3 SV=1
Length = 679
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 43 LVDSEGFPR------TDIDIHLVRSERRRLAEL---RNDHKEITEKI 80
L +SE FP+ D+D L+RSER R+ R H+E+TE
Sbjct: 257 LAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESF 303
>sp|P44947|DEGS_HAEIN Serine endoprotease DegS OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=degS PE=3 SV=1
Length = 340
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
VI +++ SPAA+ G+Q+GD +LK E G + E + + V V I+R G +
Sbjct: 269 VITDVSPNSPAAKSGIQVGDVILKLNNQE-GISAREMMQIIANTKPNSKVLVTILRLGKI 327
Query: 208 INLAVTPRPW 217
+ + V +
Sbjct: 328 LQIPVVIEEF 337
>sp|Q8VQ25|Y627_BARHE Putative zinc metalloprotease BH06270 OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=BH06270 PE=3 SV=2
Length = 358
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 23/143 (16%)
Query: 92 LVPVPTSAKDSGDD----GGSNNQNPSILGTVQSA-SFNNAVPRNSPAAMDV--DVIIRR 144
L+P+ K GD+ G S+ P + G+ SA ++ A + +V V+I
Sbjct: 48 LIPLGGYVKFIGDEEGLHGTSSQSLPIVDGSFGSAHAWKKAATVFAGPLFNVLFTVVILT 107
Query: 145 PFA----------VIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKN 192
F V+ SPA + GLQLGD+ ++ VE+ ++L+ + G
Sbjct: 108 FFFFTYGRVAIEPVVGSFVKDSPAVQAGLQLGDRFIEMDGQQVESFEDLMNYVTFHG--- 164
Query: 193 QGNAVPVVIMRQGGLINLAVTPR 215
G+ + + R G + +TP+
Sbjct: 165 -GDPIEFKMERSGQVFTTVITPK 186
>sp|Q9KYS0|Y5695_STRCO Putative zinc metalloprotease SCO5695 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=SCO5695 PE=3
SV=1
Length = 430
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 162 GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVT 213
GL+ GD++L F V D ++L+ R N G VPVV+ R+G I L T
Sbjct: 186 GLRAGDKILAFDGVRTDD--WDKLSDLIRANPGEDVPVVVERKGEEITLHAT 235
>sp|Q0BUQ6|RPOB_GRABC DNA-directed RNA polymerase subunit beta OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpoB
PE=3 SV=1
Length = 1391
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 37 PGLSGNLVDSEGFPRTDID-----IHLVRSERRRLAELRNDHKEITEKINENIQLLHSAR 91
PG +G +VD F R +D + + R+E RLA+ R+D + I E+ N +
Sbjct: 955 PGTTGTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERGIQERAFLN---RLREK 1011
Query: 92 LVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDE 151
L+ P S G G+ + +L ++ N ++ D++++ R A + +
Sbjct: 1012 LMGHPASGGFKGIKAGTIITD-EVLAEHPRGAWRNISVQDDAVVADIELLKREFDAAVAK 1070
Query: 152 ITDASPAAEDGLQLGDQV 169
I + LQ GD++
Sbjct: 1071 IQARFEGKVEKLQRGDEL 1088
>sp|Q7SXL3|TBP_DANRE TATA-box-binding protein OS=Danio rerio GN=tbp PE=1 SV=1
Length = 302
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 107 GSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAE-DGL-- 163
G + Q P + + Q+ S A+P N+P + P + IT A+PA+E G+
Sbjct: 74 GGSGQTPQLYHSTQAVSTTTALPGNTP-------LYTTPLTPMTPITPATPASESSGIVP 126
Query: 164 QLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNA--VPVVIMR 203
QL + V TV G L L+ +A R + N VIMR
Sbjct: 127 QLQNIV---STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMR 166
>sp|P0AEE3|DEGS_ECOLI Serine endoprotease DegS OS=Escherichia coli (strain K12) GN=degS
PE=1 SV=1
Length = 355
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 283 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 341
Query: 208 INLAVTPRPW 217
+ L VT + +
Sbjct: 342 LTLQVTIQEY 351
>sp|P0AEE4|DEGS_ECO57 Serine endoprotease DegS OS=Escherichia coli O157:H7 GN=degS PE=3
SV=1
Length = 355
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 283 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 341
Query: 208 INLAVTPRPW 217
+ L VT + +
Sbjct: 342 LTLQVTIQEY 351
>sp|A5ILJ8|FTHS_THEP1 Formate--tetrahydrofolate ligase OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=fhs PE=3 SV=1
Length = 542
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
G LK +I + KR+ DMN DR +S GL G+ + GFPR D I SE
Sbjct: 139 GNELKIDITRVFWKRTM---DMN---DRALRSIVIGLGGS---ANGFPREDSFIITAASE 189
Query: 63 RRRLAELRNDHKEITEKINENIQLLHSAR 91
+ L + K++ E++ + I L++ R
Sbjct: 190 VMAVLALSENMKDLKERLGKIIVALNTDR 218
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1
PE=1 SV=4
Length = 1298
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 50 PRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVP 94
P++ + +H + R + E R DHKE E+IN+NI +L+P
Sbjct: 208 PKSVVGLHAASKDPREVREAR-DHKEPKEEINKNISDFGRQQLLP 251
>sp|B1LAQ7|FTHS_THESQ Formate--tetrahydrofolate ligase OS=Thermotoga sp. (strain RQ2)
GN=fhs PE=3 SV=1
Length = 542
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
G LK +I + KR+ DMN DR +S GL G+ + GFPR D I SE
Sbjct: 139 GNELKIDITRVFWKRTM---DMN---DRALRSIVIGLGGS---ANGFPREDSFIITAASE 189
Query: 63 RRRLAELRNDHKEITEKINENIQLLHSAR 91
+ L + K++ E++ + I L++ R
Sbjct: 190 VMAVLALSENMKDLKERLGKIIVALNTDR 218
>sp|Q9CBU4|Y1582_MYCLE Putative zinc metalloprotease ML1582 OS=Mycobacterium leprae
(strain TN) GN=ML1582 PE=3 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 153 TDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL 210
T PAA GL+ GD V+K G TV D+ +AA RK G VP+V R G I
Sbjct: 154 TGPGPAALAGLRAGDVVVKIGDTTVSTFDD----MAAVVRKLHGT-VPIVFERDGTAITS 208
Query: 211 AVTPRPWQ 218
V P Q
Sbjct: 209 YVDITPTQ 216
>sp|Q8ZRP1|RSEP_SALTY Regulator of sigma E protease OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rseP PE=3 SV=1
Length = 450
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 205
V+ E+ S A++ GLQ GD+++K G L + + R N G + + I RQG
Sbjct: 225 VLSEVQANSAASKAGLQAGDRIVKVD----GQPLTQWMKFVTFVRDNPGKPLALEIERQG 280
Query: 206 GLINLAVTP 214
++L +TP
Sbjct: 281 SALSLTLTP 289
>sp|Q8Z9A4|RSEP_SALTI Regulator of sigma E protease OS=Salmonella typhi GN=rseP PE=3 SV=1
Length = 450
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 205
V+ E+ S A++ GLQ GD+++K G L + + R N G + + I RQG
Sbjct: 225 VLSEVQANSAASKAGLQAGDRIVKVD----GQPLTQWMKFVTFVRDNPGKPLALEIERQG 280
Query: 206 GLINLAVTP 214
++L +TP
Sbjct: 281 SALSLTLTP 289
>sp|C8VBH3|CEF1_EMENI Pre-mRNA-splicing factor cef1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cef1
PE=3 SV=1
Length = 791
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 120 QSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGT----V 175
Q+ + ++PR P +D+D ++ R V+D IT A E L + + KF T +
Sbjct: 546 QTQVYQRSLPR--PVVLDIDALMERASRVMDPITGLI-AKEAALLVANDACKFATPGAKI 602
Query: 176 EAGDNLLERL 185
E LERL
Sbjct: 603 EGKPRKLERL 612
>sp|Q9X287|FTHS_THEMA Formate--tetrahydrofolate ligase OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=fhs PE=1
SV=1
Length = 542
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
G LK +I + KR+ DMN DR +S GL G+ + GFPR D I SE
Sbjct: 139 GNELKIDITRVFWKRTM---DMN---DRALRSIVIGLGGS---ANGFPREDSFIITAASE 189
Query: 63 RRRLAELRNDHKEITEKINENIQLLHSAR 91
+ L + K++ E++ + I L + R
Sbjct: 190 VMAILALSENMKDLKERLGKIIVALDADR 218
>sp|Q9WZZ2|Y890_THEMA Putative zinc metalloprotease TM_0890 OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=TM_0890 PE=3 SV=1
Length = 501
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 149 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLI 208
IDE+ SPA E GL+ GD + A D + +G V +VI+R G
Sbjct: 125 IDEVVPGSPAEEAGLRRGDIIYSINDKIAFDTSI----ISNEIQKGLPVELVIIRNGEKK 180
Query: 209 NLAVTPRPW 217
+L +TPR +
Sbjct: 181 SLRLTPRMY 189
>sp|Q54QG9|UBA3_DICDI NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium
discoideum GN=uba3 PE=1 SV=1
Length = 442
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 136 MDVDVIIRR--PFAV--IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK 191
+D++ II+R PFA + T ASP +GLQ +VL G G +L+ LA G +
Sbjct: 15 IDIEKIIKRTGPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLALSGFR 74
Query: 192 N 192
N
Sbjct: 75 N 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,791,232
Number of Sequences: 539616
Number of extensions: 3716878
Number of successful extensions: 11620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 11563
Number of HSP's gapped (non-prelim): 80
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)