Query 026990
Match_columns 230
No_of_seqs 389 out of 1960
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3129 26S proteasome regulat 100.0 9.1E-58 2E-62 379.7 21.3 211 1-230 14-226 (231)
2 PF13180 PDZ_2: PDZ domain; PD 99.5 5.7E-13 1.2E-17 96.8 10.2 67 145-213 14-81 (82)
3 PF04495 GRASP55_65: GRASP55/6 99.5 3E-13 6.6E-18 108.3 8.9 83 144-228 42-128 (138)
4 cd00991 PDZ_archaeal_metallopr 99.3 1.7E-11 3.8E-16 88.5 10.7 67 145-213 10-77 (79)
5 cd00989 PDZ_metalloprotease PD 99.3 3.2E-11 6.9E-16 86.1 10.3 66 147-214 14-79 (79)
6 cd00986 PDZ_LON_protease PDZ d 99.3 7.2E-11 1.6E-15 84.9 11.0 70 145-217 8-78 (79)
7 cd00988 PDZ_CTP_protease PDZ d 99.2 1.1E-10 2.5E-15 84.5 9.2 69 145-215 13-84 (85)
8 cd00990 PDZ_glycyl_aminopeptid 99.1 4.6E-10 1E-14 80.5 9.5 66 146-215 13-78 (80)
9 cd00987 PDZ_serine_protease PD 99.1 5.5E-10 1.2E-14 81.4 9.9 64 146-211 25-89 (90)
10 TIGR00054 RIP metalloprotease 99.1 6.3E-10 1.4E-14 104.0 12.0 78 146-226 204-281 (420)
11 PRK10779 zinc metallopeptidase 99.1 1.4E-09 3.1E-14 102.4 11.6 79 147-227 223-305 (449)
12 TIGR02037 degP_htrA_DO peripla 99.0 2.5E-09 5.5E-14 100.0 11.9 83 145-229 257-346 (428)
13 cd00136 PDZ PDZ domain, also c 99.0 2.1E-09 4.5E-14 75.0 7.5 55 145-201 13-69 (70)
14 TIGR02860 spore_IV_B stage IV 99.0 5.7E-09 1.2E-13 96.6 11.5 73 155-229 123-197 (402)
15 PRK10898 serine endoprotease; 98.9 7.5E-09 1.6E-13 94.8 11.5 72 145-218 279-351 (353)
16 PRK10139 serine endoprotease; 98.9 6.6E-09 1.4E-13 98.2 11.0 69 145-215 290-359 (455)
17 TIGR02038 protease_degS peripl 98.9 6.7E-09 1.4E-13 95.0 10.8 71 145-217 278-349 (351)
18 TIGR01713 typeII_sec_gspC gene 98.9 1.7E-08 3.7E-13 88.8 10.5 67 145-213 191-258 (259)
19 PRK10779 zinc metallopeptidase 98.9 7.4E-09 1.6E-13 97.6 8.3 66 147-214 128-194 (449)
20 PRK10942 serine endoprotease; 98.8 2.8E-08 6E-13 94.4 12.1 69 145-215 311-380 (473)
21 TIGR03279 cyano_FeS_chp putati 98.8 2.7E-08 5.8E-13 92.8 9.3 71 149-227 2-73 (433)
22 PLN00049 carboxyl-terminal pro 98.8 7.2E-08 1.6E-12 89.4 11.2 67 146-214 103-171 (389)
23 PRK10139 serine endoprotease; 98.7 5.3E-08 1.1E-12 92.0 10.4 64 146-212 391-454 (455)
24 TIGR00225 prc C-terminal pepti 98.7 3.2E-08 6.8E-13 89.8 8.4 67 146-214 63-131 (334)
25 cd00992 PDZ_signaling PDZ doma 98.7 7.1E-08 1.5E-12 68.9 8.0 54 145-201 26-81 (82)
26 PF00595 PDZ: PDZ domain (Also 98.7 6.3E-08 1.4E-12 69.7 7.7 57 145-202 25-81 (81)
27 TIGR02037 degP_htrA_DO peripla 98.7 7.2E-08 1.6E-12 90.2 10.0 64 146-211 363-427 (428)
28 smart00228 PDZ Domain present 98.7 1.3E-07 2.7E-12 67.7 7.8 58 145-205 26-85 (85)
29 PRK10942 serine endoprotease; 98.7 1.5E-07 3.2E-12 89.4 10.4 65 145-212 408-472 (473)
30 TIGR00054 RIP metalloprotease 98.5 3.3E-07 7.1E-12 85.8 7.4 64 145-211 128-191 (420)
31 COG0793 Prc Periplasmic protea 98.4 1E-06 2.3E-11 82.2 9.4 69 145-213 112-182 (406)
32 COG0265 DegQ Trypsin-like seri 98.3 4.6E-06 1E-10 75.9 10.9 71 144-216 269-340 (347)
33 PRK11186 carboxy-terminal prot 98.3 4.2E-06 9.1E-11 82.4 9.3 69 146-214 256-333 (667)
34 KOG3834 Golgi reassembly stack 98.2 3.3E-06 7.1E-11 78.0 6.3 78 148-228 112-194 (462)
35 COG3480 SdrC Predicted secrete 98.1 1.7E-05 3.8E-10 71.0 9.6 84 142-228 127-214 (342)
36 KOG1421 Predicted signaling-as 98.0 4.5E-05 9.7E-10 74.3 9.9 67 146-215 304-370 (955)
37 PRK09681 putative type II secr 97.9 6E-05 1.3E-09 66.9 9.1 62 151-214 210-275 (276)
38 PF14685 Tricorn_PDZ: Tricorn 97.8 0.00014 3E-09 54.0 7.9 64 146-211 13-87 (88)
39 KOG3553 Tax interaction protei 97.7 3E-05 6.6E-10 58.6 3.6 32 145-176 59-90 (124)
40 COG3975 Predicted protease wit 97.6 8.8E-05 1.9E-09 70.5 5.4 61 146-215 463-523 (558)
41 KOG3834 Golgi reassembly stack 97.6 0.00025 5.5E-09 65.8 7.6 81 145-229 15-100 (462)
42 KOG1320 Serine protease [Postt 97.3 0.0011 2.4E-08 62.8 8.2 68 146-215 399-467 (473)
43 COG3031 PulC Type II secretory 96.9 0.0036 7.9E-08 54.3 6.9 59 152-212 214-273 (275)
44 COG0750 Predicted membrane-ass 96.8 0.0069 1.5E-07 55.3 9.3 67 147-215 131-209 (375)
45 KOG3580 Tight junction protein 96.6 0.0023 5.1E-08 61.9 4.1 55 146-202 430-487 (1027)
46 KOG3532 Predicted protein kina 96.4 0.0077 1.7E-07 59.1 6.8 54 147-203 400-453 (1051)
47 KOG3209 WW domain-containing p 96.3 0.0066 1.4E-07 59.8 5.6 58 145-203 778-836 (984)
48 KOG3550 Receptor targeting pro 95.9 0.029 6.3E-07 45.7 6.7 55 147-202 117-172 (207)
49 PF12812 PDZ_1: PDZ-like domai 95.8 0.036 7.7E-07 40.1 6.1 45 147-193 32-76 (78)
50 KOG3542 cAMP-regulated guanine 95.4 0.018 3.8E-07 56.8 4.1 54 146-203 563-618 (1283)
51 KOG3605 Beta amyloid precursor 95.3 0.029 6.4E-07 54.8 5.5 81 144-227 672-755 (829)
52 KOG3651 Protein kinase C, alph 95.1 0.063 1.4E-06 48.3 6.5 58 144-202 29-87 (429)
53 KOG3580 Tight junction protein 94.7 0.051 1.1E-06 52.9 5.1 67 147-214 221-288 (1027)
54 KOG3209 WW domain-containing p 94.5 0.086 1.9E-06 52.2 6.2 60 145-204 371-432 (984)
55 KOG3552 FERM domain protein FR 94.4 0.066 1.4E-06 54.4 5.2 55 147-203 77-131 (1298)
56 KOG3606 Cell polarity protein 93.2 0.25 5.5E-06 43.9 6.2 60 143-203 192-252 (358)
57 KOG1421 Predicted signaling-as 92.8 0.34 7.3E-06 48.1 7.0 62 142-214 768-829 (955)
58 KOG3549 Syntrophins (type gamm 90.9 0.44 9.5E-06 43.8 5.2 59 142-202 78-137 (505)
59 KOG0606 Microtubule-associated 90.9 0.42 9E-06 49.7 5.5 50 148-200 661-712 (1205)
60 KOG0609 Calcium/calmodulin-dep 89.4 0.7 1.5E-05 44.5 5.4 57 146-203 147-204 (542)
61 KOG1892 Actin filament-binding 88.3 0.75 1.6E-05 47.4 4.9 60 144-205 959-1020(1629)
62 KOG3551 Syntrophins (type beta 84.9 1.1 2.3E-05 41.9 3.7 58 143-202 109-167 (506)
63 KOG2921 Intramembrane metallop 83.6 1.8 3.9E-05 40.5 4.7 44 146-191 221-265 (484)
64 KOG3571 Dishevelled 3 and rela 80.2 3.4 7.5E-05 39.8 5.3 58 146-204 278-339 (626)
65 PF11874 DUF3394: Domain of un 78.2 2.9 6.2E-05 35.1 3.7 29 145-173 122-150 (183)
66 COG5233 GRH1 Peripheral Golgi 72.8 8.8 0.00019 35.1 5.5 79 149-228 190-274 (417)
67 COG1669 Predicted nucleotidylt 71.3 2.5 5.4E-05 31.9 1.5 40 24-64 11-53 (97)
68 PF09340 NuA4: Histone acetylt 70.1 5.9 0.00013 28.7 3.2 23 7-29 1-23 (80)
69 cd05402 NT_PAP_TUTase Nucleoti 70.0 4.4 9.5E-05 30.4 2.7 63 18-86 3-65 (114)
70 PF05384 DegS: Sensor protein 68.5 25 0.00055 28.8 7.0 58 6-84 96-153 (159)
71 PF09789 DUF2353: Uncharacteri 68.1 24 0.00053 32.2 7.4 79 5-86 83-162 (319)
72 COG0255 RpmC Ribosomal protein 68.0 30 0.00064 24.4 6.3 50 5-71 7-57 (69)
73 PF12325 TMF_TATA_bd: TATA ele 67.2 51 0.0011 25.7 8.2 57 5-86 34-90 (120)
74 KOG3605 Beta amyloid precursor 67.1 5.1 0.00011 39.8 3.0 47 148-194 759-805 (829)
75 PRK10778 dksA RNA polymerase-b 64.3 76 0.0016 25.7 9.1 67 11-89 42-108 (151)
76 KOG0353 ATP-dependent DNA heli 59.8 16 0.00036 34.4 4.8 48 5-54 29-81 (695)
77 PF12210 Hrs_helical: Hepatocy 55.9 86 0.0019 23.6 7.5 49 8-81 46-94 (96)
78 PF10458 Val_tRNA-synt_C: Valy 53.9 68 0.0015 21.9 6.1 63 5-81 1-63 (66)
79 CHL00154 rpl29 ribosomal prote 53.8 48 0.001 23.1 5.3 52 4-72 7-59 (67)
80 COG5233 GRH1 Peripheral Golgi 53.4 9.5 0.00021 34.9 2.1 29 148-176 66-94 (417)
81 PRK00306 50S ribosomal protein 52.9 49 0.0011 22.8 5.3 50 5-71 5-55 (66)
82 cd00427 Ribosomal_L29_HIP Ribo 51.9 54 0.0012 21.9 5.2 46 9-71 7-52 (57)
83 PF00831 Ribosomal_L29: Riboso 50.6 74 0.0016 21.3 6.1 46 9-71 8-53 (58)
84 COG3750 Uncharacterized protei 49.5 37 0.00081 24.6 4.2 29 8-37 21-49 (85)
85 TIGR02420 dksA RNA polymerase- 47.9 1.2E+02 0.0026 22.9 9.2 68 9-88 9-76 (110)
86 PF14362 DUF4407: Domain of un 47.3 1.4E+02 0.003 26.5 8.6 73 7-81 141-213 (301)
87 KOG4302 Microtubule-associated 47.2 1.6E+02 0.0034 29.7 9.6 84 5-88 164-257 (660)
88 PF11553 DUF3231: Protein of u 46.3 97 0.0021 24.9 6.9 66 16-88 55-141 (166)
89 cd05397 NT_Pol-beta-like Nucle 45.3 18 0.00039 23.3 2.0 25 35-59 18-42 (49)
90 PRK13746 aminoglycoside resist 43.8 17 0.00036 32.2 2.2 41 19-59 8-53 (262)
91 KOG3856 Uncharacterized conser 42.8 51 0.0011 26.0 4.4 26 4-29 13-38 (135)
92 PF10073 DUF2312: Uncharacteri 42.3 56 0.0012 23.4 4.2 26 8-33 11-36 (74)
93 PRK13182 racA polar chromosome 42.2 1.5E+02 0.0032 24.6 7.5 59 8-82 85-143 (175)
94 TIGR02976 phageshock_pspB phag 41.4 79 0.0017 22.6 4.9 31 4-34 38-68 (75)
95 PF09267 Dict-STAT-coil: Dicty 39.8 1.8E+02 0.0038 22.6 8.4 61 8-88 6-66 (114)
96 PF06667 PspB: Phage shock pro 39.4 91 0.002 22.3 5.0 34 4-38 38-71 (75)
97 PF08202 MIS13: Mis12-Mtw1 pro 39.3 2.9E+02 0.0062 24.8 9.6 85 5-89 161-250 (301)
98 PRK14549 50S ribosomal protein 38.9 1.3E+02 0.0029 20.9 6.1 47 9-71 13-59 (69)
99 KOG1738 Membrane-associated gu 38.3 21 0.00045 35.4 2.0 41 147-190 227-268 (638)
100 PRK09458 pspB phage shock prot 37.3 1E+02 0.0022 22.1 4.9 33 5-38 39-71 (75)
101 PF02183 HALZ: Homeobox associ 36.7 98 0.0021 19.8 4.4 28 5-32 16-43 (45)
102 PF07106 TBPIP: Tat binding pr 35.0 1.7E+02 0.0036 23.6 6.7 55 8-81 79-133 (169)
103 PF09789 DUF2353: Uncharacteri 34.4 2.4E+02 0.0051 25.9 8.0 69 8-85 154-224 (319)
104 PRK00461 rpmC 50S ribosomal pr 34.3 1.2E+02 0.0027 22.3 5.1 46 9-71 9-54 (87)
105 PF10146 zf-C4H2: Zinc finger- 34.2 2.3E+02 0.0049 24.6 7.6 28 60-87 77-104 (230)
106 PF07061 Swi5: Swi5; InterPro 33.5 1.9E+02 0.0041 21.0 8.4 59 5-86 4-64 (83)
107 COG2759 MIS1 Formyltetrahydrof 33.1 54 0.0012 31.7 3.8 48 36-86 176-223 (554)
108 PRK13666 hypothetical protein; 32.7 50 0.0011 24.6 2.8 76 9-91 12-89 (92)
109 TIGR00012 L29 ribosomal protei 32.3 1.5E+02 0.0032 19.6 4.9 15 57-71 37-51 (55)
110 KOG4250 TANK binding protein k 31.5 1.2E+02 0.0026 30.7 6.0 74 4-79 502-579 (732)
111 PF09738 DUF2051: Double stran 30.3 3.2E+02 0.007 24.7 8.2 73 6-81 217-296 (302)
112 PRK14900 valS valyl-tRNA synth 30.2 3.8E+02 0.0082 28.5 9.8 66 6-89 840-905 (1052)
113 TIGR03017 EpsF chain length de 29.9 2.6E+02 0.0056 25.9 7.9 53 10-83 256-308 (444)
114 PRK05729 valS valyl-tRNA synth 29.9 2E+02 0.0043 29.8 7.6 59 6-78 809-867 (874)
115 cd05400 NT_2-5OAS_ClassI-CCAas 29.8 35 0.00076 26.4 1.7 75 12-88 4-80 (143)
116 KOG3801 Uncharacterized conser 29.6 1.4E+02 0.0029 22.4 4.6 43 46-88 20-64 (94)
117 PRK11637 AmiB activator; Provi 29.3 2.1E+02 0.0045 26.8 7.1 8 165-172 338-345 (428)
118 TIGR01010 BexC_CtrB_KpsE polys 29.1 2E+02 0.0044 26.1 6.9 24 8-31 214-237 (362)
119 KOG0673 Thymidylate synthase [ 29.1 55 0.0012 28.8 2.9 67 140-206 199-266 (293)
120 TIGR02132 phaR_Bmeg polyhydrox 28.8 3.2E+02 0.0069 23.0 7.2 60 8-88 79-138 (189)
121 PRK13694 hypothetical protein; 28.7 1.2E+02 0.0026 22.2 4.2 26 8-33 19-44 (83)
122 PF02179 BAG: BAG domain; Int 28.3 1.5E+02 0.0033 20.7 4.7 37 14-67 26-62 (76)
123 PF03961 DUF342: Protein of un 27.6 4.8E+02 0.01 24.6 9.3 30 4-33 330-359 (451)
124 PF11285 DUF3086: Protein of u 27.1 61 0.0013 28.8 2.8 21 8-28 4-24 (283)
125 PF05565 Sipho_Gp157: Siphovir 26.9 1.1E+02 0.0024 24.8 4.2 29 5-33 58-86 (162)
126 PRK03760 hypothetical protein; 26.8 87 0.0019 24.1 3.4 25 145-170 89-113 (117)
127 PF13015 PRKCSH_1: Glucosidase 26.7 84 0.0018 25.5 3.5 29 7-35 2-30 (154)
128 PF14916 CCDC92: Coiled-coil d 26.0 1.8E+02 0.004 19.9 4.5 33 57-89 3-35 (60)
129 PF13600 DUF4140: N-terminal d 25.9 1.4E+02 0.0029 22.0 4.3 22 9-30 71-92 (104)
130 PF00103 Hormone_1: Somatotrop 25.7 2.5E+02 0.0053 23.8 6.4 75 5-80 124-201 (214)
131 PF05761 5_nucleotid: 5' nucle 25.6 1.7E+02 0.0037 28.0 5.8 25 65-89 363-387 (448)
132 KOG3026 Splicing factor SPF30 25.5 1.5E+02 0.0032 26.1 4.8 22 65-86 27-48 (262)
133 PF11068 YlqD: YlqD protein; 25.5 3.4E+02 0.0074 21.4 9.5 33 57-89 56-88 (131)
134 smart00787 Spc7 Spc7 kinetocho 25.0 2.7E+02 0.0058 25.3 6.8 23 59-81 220-242 (312)
135 KOG0018 Structural maintenance 24.9 2.4E+02 0.0052 30.0 7.0 49 8-81 652-700 (1141)
136 COG1382 GimC Prefoldin, chaper 24.9 1.4E+02 0.0031 23.3 4.3 30 5-34 17-46 (119)
137 PF08317 Spc7: Spc7 kinetochor 24.6 5.2E+02 0.011 23.3 8.7 59 6-81 175-233 (325)
138 PLN02943 aminoacyl-tRNA ligase 24.3 3.1E+02 0.0067 28.8 7.9 65 6-88 887-951 (958)
139 PF06305 DUF1049: Protein of u 24.1 1E+02 0.0023 20.6 3.1 22 6-27 46-67 (68)
140 COG4838 Uncharacterized protei 23.9 89 0.0019 22.7 2.7 22 70-91 68-89 (92)
141 COG1625 Fe-S oxidoreductase, r 23.7 59 0.0013 30.7 2.3 30 147-176 3-33 (414)
142 PF04977 DivIC: Septum formati 23.4 1.4E+02 0.003 20.4 3.7 20 8-27 31-50 (80)
143 PF14703 DUF4463: Domain of un 23.4 2.6E+02 0.0057 19.4 6.9 26 8-33 6-31 (85)
144 PF12943 DUF3839: Protein of u 23.3 61 0.0013 27.1 2.1 21 62-82 213-233 (242)
145 KOG4302 Microtubule-associated 23.1 8E+02 0.017 24.9 10.5 75 8-88 110-191 (660)
146 COG1734 DksA DnaK suppressor p 23.0 3.7E+02 0.008 20.9 8.7 69 9-89 9-77 (120)
147 TIGR02231 conserved hypothetic 22.9 6.1E+02 0.013 24.3 9.2 24 6-29 76-99 (525)
148 PRK10132 hypothetical protein; 22.8 1.2E+02 0.0025 23.3 3.4 24 63-86 11-34 (108)
149 PF02370 M: M protein repeat; 22.7 1.4E+02 0.003 16.2 2.7 16 16-31 2-17 (21)
150 PF14275 DUF4362: Domain of un 22.4 2.8E+02 0.0061 20.8 5.3 36 164-200 1-36 (98)
151 PTZ00419 valyl-tRNA synthetase 22.0 3.5E+02 0.0076 28.5 7.8 61 6-80 927-987 (995)
152 PRK14552 C/D box methylation g 21.5 3.7E+02 0.008 25.5 7.1 41 47-87 222-262 (414)
153 PLN02381 valyl-tRNA synthetase 21.0 4.1E+02 0.0088 28.4 8.0 64 6-87 995-1058(1066)
154 PLN02320 seryl-tRNA synthetase 20.9 2.1E+02 0.0046 27.8 5.5 32 56-87 136-167 (502)
155 PF01909 NTP_transf_2: Nucleot 20.5 14 0.0003 26.2 -2.1 25 35-59 15-39 (93)
156 PF11285 DUF3086: Protein of u 20.5 1.3E+02 0.0028 26.8 3.6 24 5-28 15-38 (283)
157 PRK06531 yajC preprotein trans 20.5 60 0.0013 25.1 1.4 16 161-176 35-50 (113)
No 1
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-58 Score=379.72 Aligned_cols=211 Identities=41% Similarity=0.706 Sum_probs=170.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHH
Q 026990 1 MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKI 80 (230)
Q Consensus 1 ~~~~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~i 80 (230)
|+|+..+.++++||.+|++||.||++++++|.+ ++.+|++||||+|||||+|||||+||++||+|||||||||+||++|
T Consensus 14 ~ag~~~~~~~~eLm~~K~eiE~qin~~~~vL~~-~~~~Md~pLvd~eGfPRsDIDV~qVRtaRh~ii~LrNDh~el~~qi 92 (231)
T KOG3129|consen 14 MAGANTKSELKELMDKKTEIETQINELVEVLEN-NGGTMDGPLVDAEGFPRSDIDVYQVRTARHNIICLRNDHKELTEQI 92 (231)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCcccCCCCCccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 689999999999999999999999999999988 5666999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCCCceEEEEecCCChhhh
Q 026990 81 NENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAE 160 (230)
Q Consensus 81 e~~L~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~V~~V~~~SPA~~ 160 (230)
++.|+++|+....+... .+ +.+.. ..+. ..... ..+..+ .......||++|++|.|+|||++
T Consensus 93 ~~~l~q~hs~~~~~~~~-~~---~~t~a-~~e~---------~~~~~---~~an~~-~~~gP~~~Fa~V~sV~~~SPA~~ 154 (231)
T KOG3129|consen 93 EVLLNQLHSERPTSRKE-VT---DDTGA-EEEA---------DSRAA---GNANSM-TSLGPMRPFAVVDSVVPGSPADE 154 (231)
T ss_pred HHHHHHHhccccccchh-hc---cccch-hhcc---------ccccc---cccccc-cccCCccceEEEeecCCCChhhh
Confidence 99999999853221111 11 00000 0000 00000 000000 01122357999999999999999
Q ss_pred cCCCCCCEEEEECCee-CCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCCCcceeeEE-EEeC
Q 026990 161 DGLQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCH-FRML 230 (230)
Q Consensus 161 AGL~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~LG~~-~~pl 230 (230)
|||+.||.|++||.++ .|+..+..+...++...++.+.++|.|.|+.+.+.|+|++|+|+|+|||+ +.|+
T Consensus 155 aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLGC~~i~pi 226 (231)
T KOG3129|consen 155 AGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLGCNYIQPI 226 (231)
T ss_pred hCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCcceeeeeeccc
Confidence 9999999999999998 56666888888888889999999999999999999999999999999999 6664
No 2
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.47 E-value=5.7e-13 Score=96.83 Aligned_cols=67 Identities=30% Similarity=0.381 Sum_probs=61.2
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~~~l~l~ 213 (230)
.+++|.+|.++|||++|||++||+|++|||.+ +.++.++..++. ..+|+++.|+|.|+|+.++++++
T Consensus 14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~ 81 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKP--VNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVEVT 81 (82)
T ss_dssp SSEEEEEESTTSHHHHTTS-TTEEEEEETTEE--SSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence 37899999999999999999999999999999 999999999885 46899999999999999998876
No 3
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=99.46 E-value=3e-13 Score=108.28 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=67.2
Q ss_pred CCceEEEEecCCChhhhcCCCC-CCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-CCCC
Q 026990 144 RPFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQG 219 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AGL~~-GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R--~g~~~~l~l~p~-~~~g 219 (230)
..+..|..|.|+|||++|||++ .|.|+.+++.. ..+.++|...+..+.++++.+.|.+ ....++++++|. .|+|
T Consensus 42 ~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~--l~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG 119 (138)
T PF04495_consen 42 EEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGL--LDDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGG 119 (138)
T ss_dssp CCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSS
T ss_pred cceEEEeEecCCCHHHHCCccccccEEEEcccee--cCCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCC
Confidence 4678999999999999999999 69999999988 7788999999999999999999996 456789999997 7999
Q ss_pred cceeeEEEE
Q 026990 220 RGLLGCHFR 228 (230)
Q Consensus 220 ~g~LG~~~~ 228 (230)
+|+|||.+.
T Consensus 120 ~GlLGc~ig 128 (138)
T PF04495_consen 120 RGLLGCHIG 128 (138)
T ss_dssp STSSSEEEE
T ss_pred CeeeeEEec
Confidence 999999985
No 4
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.33 E-value=1.7e-11 Score=88.55 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=61.1
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~ 213 (230)
.+++|..|.++|||+++||++||+|++|||.+ +.+|.++...+... .|..+.+++.|+|+..+++++
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~--v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTP--ITTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEE--cCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 46889999999999999999999999999999 99999999998864 588999999999998888765
No 5
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.30 E-value=3.2e-11 Score=86.12 Aligned_cols=66 Identities=33% Similarity=0.546 Sum_probs=60.0
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
++|..|.++|||+++||++||+|++|||.+ +.++.++...+....+..+.+++.|+|+..++.++|
T Consensus 14 ~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l~~ 79 (79)
T cd00989 14 PVIGEVVPGSPAAKAGLKAGDRILAINGQK--IKSWEDLVDAVQENPGKPLTLTVERNGETITLTLTP 79 (79)
T ss_pred cEEEeECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHCCCceEEEEEEECCEEEEEEecC
Confidence 689999999999999999999999999999 999999999888766778999999999888877754
No 6
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.27 E-value=7.2e-11 Score=84.93 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=62.8
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
-+++|..|.++|||+. ||++||+|++|||.+ +.+|+++...+.. ..+..+.+++.|+|+..++++++..|
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~~~ 78 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKP--FKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILKTF 78 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence 3688999999999997 899999999999999 9999999998875 56889999999999999999887654
No 7
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.21 E-value=1.1e-10 Score=84.49 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=61.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~-g~~~~l~l~p~ 215 (230)
..++|..|.++|||+++||++||+|++|||.+ +.+| .++..++....++.+.+++.|+ |+..++.++|.
T Consensus 13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~--i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~~~~ 84 (85)
T cd00988 13 GGLVITSVLPGSPAAKAGIKAGDIIVAIDGEP--VDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTRL 84 (85)
T ss_pred CeEEEEEecCCCCHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEEEEC
Confidence 45789999999999999999999999999999 8888 8998888776788999999999 88888888774
No 8
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.14 E-value=4.6e-10 Score=80.46 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=55.8
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.++|..|.++|||+++||++||+|++|||.+ +.+|.++...+ ..+..+.+++.|+|+..++.+++.
T Consensus 13 ~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~--v~~~~~~l~~~--~~~~~v~l~v~r~g~~~~~~v~~~ 78 (80)
T cd00990 13 LGKVTFVRDDSPADKAGLVAGDELVAVNGWR--VDALQDRLKEY--QAGDPVELTVFRDDRLIEVPLTLA 78 (80)
T ss_pred cEEEEEECCCChHHHhCCCCCCEEEEECCEE--hHHHHHHHHhc--CCCCEEEEEEEECCEEEEEEEEec
Confidence 4789999999999999999999999999999 77766553332 367789999999999888887763
No 9
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.13 E-value=5.5e-10 Score=81.41 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=57.5
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLA 211 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~ 211 (230)
+++|..|.++|||+++||++||+|++|||.+ +.++.++...+... .+..+.+++.|+|+.+++.
T Consensus 25 g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~~ 89 (90)
T cd00987 25 GVLVASVDPGSPAAKAGLKPGDVILAVNGKP--VKSVADLRRALAELKPGDKVTLTVLRGGKELTVT 89 (90)
T ss_pred EEEEEEECCCCHHHHcCCCcCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence 6889999999999999999999999999999 99999999888764 4788999999999876654
No 10
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.11 E-value=6.3e-10 Score=104.04 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=68.6
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCCCcceeeE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 225 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~LG~ 225 (230)
.++|.+|.++|||++|||++||+|++|||++ +.+|+++...+....++++.++|.|+|+..++.++|...++.+ +|+
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~~-iGi 280 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEK--LRSWTDFVSAVKENPGKSMDIKVERNGETLSISLTPEAKGKIG-IGI 280 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCCCceE-EEE
Confidence 4789999999999999999999999999999 9999999999988788889999999999999999996422222 776
Q ss_pred E
Q 026990 226 H 226 (230)
Q Consensus 226 ~ 226 (230)
.
T Consensus 281 ~ 281 (420)
T TIGR00054 281 S 281 (420)
T ss_pred e
Confidence 4
No 11
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.05 E-value=1.4e-09 Score=102.39 Aligned_cols=79 Identities=29% Similarity=0.447 Sum_probs=69.3
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC--C--cce
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ--G--RGL 222 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~--g--~g~ 222 (230)
++|..|.++|||++|||++||+|++|||++ +.+|+++...+....++.+.++|.|+|+..++.++|.... + .+.
T Consensus 223 ~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~~ 300 (449)
T PRK10779 223 PVLAEVQPNSAASKAGLQAGDRIVKVDGQP--LTQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEGF 300 (449)
T ss_pred cEEEeeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceeeE
Confidence 689999999999999999999999999999 9999999999988778899999999999999999886321 2 356
Q ss_pred eeEEE
Q 026990 223 LGCHF 227 (230)
Q Consensus 223 LG~~~ 227 (230)
+|+..
T Consensus 301 iGi~~ 305 (449)
T PRK10779 301 AGVVP 305 (449)
T ss_pred EEEec
Confidence 88864
No 12
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.02 E-value=2.5e-09 Score=99.99 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=70.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCCC-----
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQ----- 218 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~~----- 218 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++.++...+.. ..|..+.++|.|+|+..++.+++..|.
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~--i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~ 334 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKP--ISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS 334 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCcccc
Confidence 46889999999999999999999999999999 9999999998875 568899999999999998888765332
Q ss_pred -CcceeeEEEEe
Q 026990 219 -GRGLLGCHFRM 229 (230)
Q Consensus 219 -g~g~LG~~~~p 229 (230)
....+|+.+.+
T Consensus 335 ~~~~~lGi~~~~ 346 (428)
T TIGR02037 335 SSNPFLGLTVAN 346 (428)
T ss_pred ccccccceEEec
Confidence 12457777664
No 13
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.99 E-value=2.1e-09 Score=75.00 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=49.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVI 201 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V 201 (230)
.+++|..|.++|||+.+||++||+|++|||.+ +.++ +++...++...|+.+.++|
T Consensus 13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGTD--VKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 36899999999999999999999999999999 8887 9999999887788888876
No 14
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.96 E-value=5.7e-09 Score=96.56 Aligned_cols=73 Identities=30% Similarity=0.449 Sum_probs=65.1
Q ss_pred CChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecC--CCCcceeeEEEEe
Q 026990 155 ASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP--WQGRGLLGCHFRM 229 (230)
Q Consensus 155 ~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~--~~g~g~LG~~~~p 229 (230)
+|||++|||++||+|++|||.+ +.+|+++..++....++.+.++|.|+|+..++.++|.. ..+.+.||++++.
T Consensus 123 ~SPAa~AGLq~GDiIvsING~~--V~s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V~Pv~~~~d~~ykLGl~VrD 197 (402)
T TIGR02860 123 HSPGEEAGIQIGDRILKINGEK--IKNMDDLANLINKAGGEKLTLTIERGGKIIETVIKPVKDKEEGRYRIGLYIRD 197 (402)
T ss_pred CCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCeEEEEEEECCEEEEEEEEEeeeCCCCCEEEEEEEEc
Confidence 6999999999999999999999 99999999999887788999999999999999998752 2466889998763
No 15
>PRK10898 serine endoprotease; Provisional
Probab=98.94 E-value=7.5e-09 Score=94.80 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=65.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQ 218 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~~ 218 (230)
.+++|..|.++|||+++||++||+|++|||++ +.++.++...+.. ..|+.+.++|.|+|+.+++.+++..|.
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~p 351 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYP 351 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeccCC
Confidence 47899999999999999999999999999999 9999999888876 678899999999999999998886553
No 16
>PRK10139 serine endoprotease; Provisional
Probab=98.93 E-value=6.6e-09 Score=98.15 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=63.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||++ +.+|.++...+.. ..|+.+.++|.|+|+.+++.+++.
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~ 359 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD 359 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEC
Confidence 36899999999999999999999999999999 9999999998876 678899999999999988888764
No 17
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.93 E-value=6.7e-09 Score=95.01 Aligned_cols=71 Identities=28% Similarity=0.330 Sum_probs=64.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
.+++|..|.++|||+++||++||+|++|||++ +.++.++...+.. ..|+.+.++|.|+|+.+++.+++..|
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 349 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKD--VIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTIDEK 349 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecCC
Confidence 36889999999999999999999999999999 9999999998876 67889999999999999988887543
No 18
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.87 E-value=1.7e-08 Score=88.83 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=60.7
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~ 213 (230)
.+..|..+.++|||+++||++||+|++|||.+ +.+++++..++.. ..++.+.++|.|+|+.+++.+.
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~--i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~v~ 258 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLD--LRDPEQAFQALQMLREETNLTLTVERDGQREDIYVR 258 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Confidence 47789999999999999999999999999999 9999999998886 4678999999999998888764
No 19
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.85 E-value=7.4e-09 Score=97.57 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
+.|.+|.++|||++|||++||+|++|||++ +.+|+++...+.. ..++++.++|.|+|+..+++++.
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~--V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l 194 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIE--TPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTL 194 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEe
Confidence 478999999999999999999999999999 9999999887765 45678999999999876666554
No 20
>PRK10942 serine endoprotease; Provisional
Probab=98.85 E-value=2.8e-08 Score=94.39 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=62.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||++ +.+|+++...+.. ..|+.+.++|.|+|+.+++.+++.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~ 380 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQ 380 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeC
Confidence 36889999999999999999999999999999 9999999988875 568899999999999888887753
No 21
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.78 E-value=2.7e-08 Score=92.83 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=58.9
Q ss_pred EEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE-ECCEEEEEEEEecCCCCcceeeEEE
Q 026990 149 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM-RQGGLINLAVTPRPWQGRGLLGCHF 227 (230)
Q Consensus 149 V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~-R~g~~~~l~l~p~~~~g~g~LG~~~ 227 (230)
|..|.|+|||++|||++||+|++|||.+ +.+|.++..++. +..+.++|. |+|+..++.+.|... .-||+.+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~--V~Dw~D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~d---edlG~~f 73 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVA--PRDLIDYQFLCA---DEELELEVLDANGESHQIEIEKDLD---EDLGLEF 73 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHhc---CCcEEEEEEcCCCeEEEEEEecCCC---CCCcEEe
Confidence 6789999999999999999999999999 999999887774 357889886 789888998888532 2256554
No 22
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.75 E-value=7.2e-08 Score=89.41 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=58.4
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.++|..|.++|||++|||++||+|++|||.+ +. ++.++...+....|..+.++|.|+|+..+++++.
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~--v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r 171 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTS--TEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTR 171 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence 5789999999999999999999999999999 65 4677877787777889999999999887777654
No 23
>PRK10139 serine endoprotease; Provisional
Probab=98.75 E-value=5.3e-08 Score=92.05 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=58.2
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 212 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l 212 (230)
+++|..|.++|||+++||++||+|++|||.+ +.+|+++...+.... +++.++|.|+|+.+.+.+
T Consensus 391 Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~ 454 (455)
T PRK10139 391 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKP-AIIALQIVRGNESIYLLL 454 (455)
T ss_pred ceEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 5789999999999999999999999999999 999999999998754 689999999999877654
No 24
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.74 E-value=3.2e-08 Score=89.82 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=56.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.++|..|.++|||++|||++||+|++|||.+ +.+| .++...+....|..+.++|.|+|+...+++++
T Consensus 63 ~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l 131 (334)
T TIGR00225 63 EIVIVSPFEGSPAEKAGIKPGDKIIKINGKS--VAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTL 131 (334)
T ss_pred EEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEE
Confidence 5789999999999999999999999999999 7765 67777777677889999999988655554443
No 25
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.72 E-value=7.1e-08 Score=68.92 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=46.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI 201 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V 201 (230)
.+++|..|.++|||+++||++||+|++|||.+ +. ++.++...+....+ .+.++|
T Consensus 26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVS--VEGLTHEEAVELLKNSGD-EVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHhCCCCCCCEEEEECCEE--cCccCHHHHHHHHHhCCC-eEEEEE
Confidence 46899999999999999999999999999999 77 89999998876544 566654
No 26
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.72 E-value=6.3e-08 Score=69.74 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=46.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
++++|.+|.++|||+++||++||+|++|||.++.-.+..++...++...+ ++.++|+
T Consensus 25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred CCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence 47899999999999999999999999999999222356777777877655 7888764
No 27
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.71 E-value=7.2e-08 Score=90.22 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=58.5
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLA 211 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~ 211 (230)
+++|..|.++|||+++||++||+|++|||++ +.++.++..++... .++.+.++|.|+|+...+.
T Consensus 363 Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~--V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 427 (428)
T TIGR02037 363 GVVVTKVVSGSPAARAGLQPGDVILSVNQQP--VSSVAELRKVLDRAKKGGRVALLILRGGATIFVT 427 (428)
T ss_pred ceEEEEeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 5889999999999999999999999999999 99999999998863 6889999999999877654
No 28
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.66 E-value=1.3e-07 Score=67.66 Aligned_cols=58 Identities=29% Similarity=0.454 Sum_probs=45.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHH--HHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLA--AEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~--~~l~~~~g~~v~l~V~R~g 205 (230)
++++|..|.++|||+.+||++||+|++||+.. +.++.... ..+.. .+..+.+.+.|++
T Consensus 26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~--v~~~~~~~~~~~~~~-~~~~~~l~i~r~~ 85 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTS--VEGLTHLEAVDLLKK-AGGKVTLTVLRGG 85 (85)
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence 57899999999999999999999999999999 66554433 33333 3458889888864
No 29
>PRK10942 serine endoprotease; Provisional
Probab=98.66 E-value=1.5e-07 Score=89.43 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=58.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 212 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l 212 (230)
.+++|.+|.++|||+++||++||+|++|||++ +.+|+++...+.... +.+.++|.|+|..+.+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~--V~s~~dl~~~l~~~~-~~v~l~V~R~g~~~~v~~ 472 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQP--VKNIAELRKILDSKP-SVLALNIQRGDSSIYLLM 472 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 35889999999999999999999999999999 999999999988744 789999999998876654
No 30
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.48 E-value=3.3e-07 Score=85.85 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=55.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLA 211 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~ 211 (230)
..+.|.+|.++|||++|||++||+|+++||.+ +.++.++...+.... .++.+.+.|+++..++.
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~--v~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~ 191 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNK--IPGFKDVRQQIADIA-GEPMVEILAERENWTFE 191 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhhc-ccceEEEEEecCceEec
Confidence 45789999999999999999999999999999 999999998887655 67889999977665543
No 31
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=1e-06 Score=82.18 Aligned_cols=69 Identities=26% Similarity=0.365 Sum_probs=57.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAVT 213 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~--g~~~~l~l~ 213 (230)
-..+|.++.+++||++|||++||+|++|||.++.-.+.+++...++..+|..|++++.|. ++.++++++
T Consensus 112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~ 182 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLT 182 (406)
T ss_pred CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEE
Confidence 457889999999999999999999999999993233457788888888999999999996 455655553
No 32
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.6e-06 Score=75.88 Aligned_cols=71 Identities=28% Similarity=0.312 Sum_probs=64.5
Q ss_pred CCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecC
Q 026990 144 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRP 216 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~ 216 (230)
..++.|..|.++|||+++|++.||+|+++||.+ +.+..++...+.. ..|..+.+++.|+|+..++.++...
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~--v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~ 340 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKP--VASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD 340 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEE--ccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence 356899999999999999999999999999999 9999999988875 4699999999999999999988764
No 33
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.25 E-value=4.2e-06 Score=82.43 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=55.0
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEEC--Cee-CCC--CCHHHHHHHHhhCCCCeEEEEEEEC---CEEEEEEEEe
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFG--TVE-AGD--NLLERLAAEGRKNQGNAVPVVIMRQ---GGLINLAVTP 214 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~In--g~~-~~v--~~~~dl~~~l~~~~g~~v~l~V~R~---g~~~~l~l~p 214 (230)
+.+|..|.|||||++| ||++||+|++|| |.+ ..+ .+++++...++...|.+|.++|.|. ++..+++++.
T Consensus 256 ~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R 333 (667)
T PRK11186 256 YTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTR 333 (667)
T ss_pred eEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEe
Confidence 5789999999999998 999999999998 443 112 3467888899888999999999983 4566666653
No 34
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=3.3e-06 Score=78.05 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=67.0
Q ss_pred EEEEecCCChhhhcCCC-CCCEEEEE-CCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEEEec-CCCCcce
Q 026990 148 VIDEITDASPAAEDGLQ-LGDQVLKF-GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAVTPR-PWQGRGL 222 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~-~GD~Iv~I-ng~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~--g~~~~l~l~p~-~~~g~g~ 222 (230)
-|.+|.++|||+.|||+ -+|.|+.+ +.+- ...+|+..++..++++++++.|+.- ...++++++|. .|+|.|.
T Consensus 112 Hvl~V~p~SPaalAgl~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~ 188 (462)
T KOG3834|consen 112 HVLSVEPNSPAALAGLRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGA 188 (462)
T ss_pred eeeecCCCCHHHhcccccccceEecchhhhc---cchHHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccce
Confidence 47799999999999999 68999999 5544 6778999999999999999999863 45688999997 6999999
Q ss_pred eeEEEE
Q 026990 223 LGCHFR 228 (230)
Q Consensus 223 LG~~~~ 228 (230)
|||.|.
T Consensus 189 lGCgIG 194 (462)
T KOG3834|consen 189 LGCGIG 194 (462)
T ss_pred eccccc
Confidence 999874
No 35
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=98.12 E-value=1.7e-05 Score=71.00 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=68.3
Q ss_pred cCCCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEE--ecCC
Q 026990 142 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVT--PRPW 217 (230)
Q Consensus 142 ~~~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R-~g~~~~l~l~--p~~~ 217 (230)
+.+.+++|..|..+|||... |+.||.|++|||.+ +.+.+++..++.+ ..|+.++|.+.| ++.....+++ ....
T Consensus 127 ~~y~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~--f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~ 203 (342)
T COG3480 127 VTYAGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEP--FTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDD 203 (342)
T ss_pred EEEeeEEEEEccCCcchhce-eccCCeEEeeCCee--cCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeecc
Confidence 44567788899999999886 99999999999999 9999999999986 579999999997 6655444444 4445
Q ss_pred CCcceeeEEEE
Q 026990 218 QGRGLLGCHFR 228 (230)
Q Consensus 218 ~g~g~LG~~~~ 228 (230)
+|++.||+.+.
T Consensus 204 ~g~~giGIsl~ 214 (342)
T COG3480 204 NGKAGIGISLV 214 (342)
T ss_pred CCcceeeeEee
Confidence 67788898764
No 36
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=97.97 E-value=4.5e-05 Score=74.25 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=61.2
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
-.+|..|.++|||++. |++||.+++||+.- +.++..+.+.+....|+.+.++|+|+|+..+++++..
T Consensus 304 mLvV~~vL~~gpa~k~-Le~GDillavN~t~--l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvq 370 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEKK-LEPGDILLAVNSTC--LNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQ 370 (955)
T ss_pred eEEEEEeccCCchhhc-cCCCcEEEEEccee--hHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEec
Confidence 3678999999999998 99999999999988 8888888888988899999999999999999888765
No 37
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.92 E-value=6e-05 Score=66.85 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=51.1
Q ss_pred EecCCC---hhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 026990 151 EITDAS---PAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 151 ~V~~~S---PA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.|.|+. -..++||++||++++|||.. ..+.++..++++. .....+.|+|+|+|+..++.+..
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~d--L~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~l 275 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQD--FTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIAL 275 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCee--CCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEEc
Confidence 455663 35789999999999999999 8888887777775 55688999999999999887753
No 38
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.80 E-value=0.00014 Score=53.97 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=45.3
Q ss_pred ceEEEEecCC--------ChhhhcCCC--CCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC-EEEEEE
Q 026990 146 FAVIDEITDA--------SPAAEDGLQ--LGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLA 211 (230)
Q Consensus 146 ~~~V~~V~~~--------SPA~~AGL~--~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g-~~~~l~ 211 (230)
+.+|..+.++ ||-.+.|+. +||.|++|||++ +..-.++..+|....|+.+.|+|.+.+ ..+++.
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~--v~~~~~~~~lL~~~agk~V~Ltv~~~~~~~R~v~ 87 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQP--VTADANPYRLLEGKAGKQVLLTVNRKPGGARTVV 87 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE---BTTB-HHHHHHTTTTSEEEEEEE-STT-EEEEE
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEE--CCCCCCHHHHhcccCCCEEEEEEecCCCCceEEE
Confidence 4567777665 888888875 999999999999 877778889999999999999999865 455543
No 39
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=97.74 E-value=3e-05 Score=58.56 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=30.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCee
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVE 176 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~ 176 (230)
.+++|..|.+||||+.|||+.+|+|+++||..
T Consensus 59 ~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~D 90 (124)
T KOG3553|consen 59 KGIYVTRVSEGSPAEIAGLRIHDKILQVNGWD 90 (124)
T ss_pred ccEEEEEeccCChhhhhcceecceEEEecCce
Confidence 47899999999999999999999999999988
No 40
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.60 E-value=8.8e-05 Score=70.45 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=49.4
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
+.+|..|.++|||+.|||.+||+|++|||.. ..+ .....+..+.+.+.|.|..+++.+++.
T Consensus 463 ~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s---~~l------~~~~~~d~i~v~~~~~~~L~e~~v~~~ 523 (558)
T COG3975 463 HEKITFVFPGGPAYKAGLSPGDKIVAINGIS---DQL------DRYKVNDKIQVHVFREGRLREFLVKLG 523 (558)
T ss_pred eeEEEecCCCChhHhccCCCccEEEEEcCcc---ccc------cccccccceEEEEccCCceEEeecccC
Confidence 4588999999999999999999999999984 111 123567889999999999888877653
No 41
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00025 Score=65.79 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=63.5
Q ss_pred CceEEEEecCCChhhhcCCCC-CCEEEEECCeeCCCC-CHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-CCCC
Q 026990 145 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDN-LLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQG 219 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~-GD~Iv~Ing~~~~v~-~~~dl~~~l~~~~g~~v~l~V~R--~g~~~~l~l~p~-~~~g 219 (230)
.+..|..|.++|||++|||.+ -|.|++|||.. .+ +-+.|...++.+..+ |+++|+. --..+.+.+++. .|+|
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~r--L~~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wgg 91 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIR--LNKDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGG 91 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccc--ccCchHHHHHHHHhcccc-eEEEEEecccceeEEEEecccccccc
Confidence 456789999999999999988 79999999998 54 344555666655544 8998885 345677888887 6988
Q ss_pred cceeeEEEEe
Q 026990 220 RGLLGCHFRM 229 (230)
Q Consensus 220 ~g~LG~~~~p 229 (230)
. +||+.++.
T Consensus 92 q-llGvsvrF 100 (462)
T KOG3834|consen 92 Q-LLGVSVRF 100 (462)
T ss_pred c-ccceEEEe
Confidence 7 99998864
No 42
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0011 Score=62.84 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=60.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+.|..|.+++|+..+|+.+||+|++|||++ +.+..++...+... .+..+.+..+|..+..++.+.+.
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~--V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~~ 467 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKP--VKNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILPE 467 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEE--eechHHHHHHHHhcCcCceEEEEEecCccceeEEeccc
Confidence 4678899999999999999999999999999 99999999999864 34678888888888888888775
No 43
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0036 Score=54.34 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=49.8
Q ss_pred ecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 026990 152 ITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV 212 (230)
Q Consensus 152 V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l 212 (230)
..++|-.+..|||.||+.+++|+.. ..+.+++..+++. ..-..+.++|.|+|+...+.+
T Consensus 214 gkd~slF~~sglq~GDIavaiNnld--ltdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV 273 (275)
T COG3031 214 GKDGSLFYKSGLQRGDIAVAINNLD--LTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINV 273 (275)
T ss_pred CCCcchhhhhcCCCcceEEEecCcc--cCCHHHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence 3456788999999999999999999 9999999888875 334679999999998877765
No 44
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.0069 Score=55.29 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=55.6
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe---EEEEEEE-CCEE--------EEEEEEe
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNA---VPVVIMR-QGGL--------INLAVTP 214 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~---v~l~V~R-~g~~--------~~l~l~p 214 (230)
..+..+..+|+|..+|+++||.|+++|+.+ +.+++++...+....+.. +.+.+.| ++.. ..+.+.|
T Consensus 131 ~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P 208 (375)
T COG0750 131 PVVGEVAPKSAAALAGLRPGDRIVAVDGEK--VASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTP 208 (375)
T ss_pred CeeeecCCCCHHHHcCCCCCCEEEeECCEE--ccCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeec
Confidence 345579999999999999999999999999 999999998887666655 7888889 7766 5566666
Q ss_pred c
Q 026990 215 R 215 (230)
Q Consensus 215 ~ 215 (230)
.
T Consensus 209 ~ 209 (375)
T COG0750 209 V 209 (375)
T ss_pred c
Confidence 3
No 45
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=96.57 E-value=0.0023 Score=61.86 Aligned_cols=55 Identities=31% Similarity=0.406 Sum_probs=42.8
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH---HHHHHHHhhCCCCeEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL---ERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~---~dl~~~l~~~~g~~v~l~V~ 202 (230)
+++|..|.+||||++-||+.||.|++||.+. +.++ +.+..+|.-.+|+.++|.-.
T Consensus 430 GIFVaGvqegspA~~eGlqEGDQIL~VN~vd--F~nl~REeAVlfLL~lPkGEevtilaQ 487 (1027)
T KOG3580|consen 430 GIFVAGVQEGSPAEQEGLQEGDQILKVNTVD--FRNLVREEAVLFLLELPKGEEVTILAQ 487 (1027)
T ss_pred eEEEeecccCCchhhccccccceeEEecccc--chhhhHHHHHHHHhcCCCCcEEeehhh
Confidence 4678999999999999999999999999999 5543 34444444467888877544
No 46
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=96.43 E-value=0.0077 Score=59.09 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=45.6
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
+.|-.|.+++||.++.|++||++++|+|.+ +.+..++...++...|. +.+.+.|
T Consensus 400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~p--i~s~~q~~~~~~s~~~~-~~~l~~~ 453 (1051)
T KOG3532|consen 400 VKVCTVEDNSLADKAAFKPGDVLVAINNVP--IRSERQATRFLQSTTGD-LTVLVER 453 (1051)
T ss_pred EEEEEecCCChhhHhcCCCcceEEEecCcc--chhHHHHHHHHHhcccc-eEEEEee
Confidence 568899999999999999999999999999 99999999999876654 3333433
No 47
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=96.33 E-value=0.0066 Score=59.79 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=44.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
|..-|..|.+||||++.| |++||.|++|||..+-..+..++..+++. .|-.|+++|.-
T Consensus 778 p~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKd-aGlsVtLtIip 836 (984)
T KOG3209|consen 778 PESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKD-AGLSVTLTIIP 836 (984)
T ss_pred CCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHh-cCceEEEEEcC
Confidence 445578899999999977 99999999999999212345677777765 46678888764
No 48
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=95.94 E-value=0.029 Score=45.67 Aligned_cols=55 Identities=25% Similarity=0.319 Sum_probs=41.5
Q ss_pred eEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990 147 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 147 ~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
.+|+.+.||+.|++ -||+.||.++++||+.+.-...+...++|+...| .+.+.|+
T Consensus 117 iyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g-svklvvr 172 (207)
T KOG3550|consen 117 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG-SVKLVVR 172 (207)
T ss_pred eEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC-cEEEEEe
Confidence 68999999999987 5799999999999998223345566667776555 4666553
No 49
>PF12812 PDZ_1: PDZ-like domain
Probab=95.79 E-value=0.036 Score=40.10 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=39.5
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ 193 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~ 193 (230)
.++.....++++...|+..|.+|.+||+++ +.++++|.+.++.-+
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kp--t~~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKP--TPDLDDFIKVVKKIP 76 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcC--CcCHHHHHHHHHhCC
Confidence 556677889999987799999999999999 999999999987643
No 50
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.37 E-value=0.018 Score=56.75 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=40.8
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHH--HHHHHHhhCCCCeEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~--dl~~~l~~~~g~~v~l~V~R 203 (230)
+++|.+|.|||.|+++||+.||.|++|||+. +.++. ...++|.+ +..+.++|+.
T Consensus 563 gifV~~V~pgskAa~~GlKRgDqilEVNgQn--fenis~~KA~eiLrn--nthLtltvKt 618 (1283)
T KOG3542|consen 563 GIFVAEVFPGSKAAREGLKRGDQILEVNGQN--FENISAKKAEEILRN--NTHLTLTVKT 618 (1283)
T ss_pred eeEEeeecCCchHHHhhhhhhhhhhhccccc--hhhhhHHHHHHHhcC--CceEEEEEec
Confidence 4679999999999999999999999999999 55443 33344543 3456666654
No 51
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=95.35 E-value=0.029 Score=54.83 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=55.5
Q ss_pred CCceEEEEecCCChhhhcC-CCCCCEEEEECCee-CCCCCHHHHHHHHhhCCC-CeEEEEEEECCEEEEEEEEecCCCCc
Q 026990 144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQG-NAVPVVIMRQGGLINLAVTPRPWQGR 220 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~~~g-~~v~l~V~R~g~~~~l~l~p~~~~g~ 220 (230)
.|.++|.....++||++.| |..||+|++|||.. ++ --+..-+.++++.++ ..|+++|.+.--..++.+.- -.-+
T Consensus 672 LPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVG-LPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~R--Pd~k 748 (829)
T KOG3605|consen 672 LPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVG-LPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRR--PDLR 748 (829)
T ss_pred chHHHHHhcccCChhhhcCCccccceeEeecCceecc-ccHHHHHHHHhcccccceEEEEEecCCCceEEEeec--ccch
Confidence 4777888889999999988 89999999999988 22 235666778876554 45777777654444443321 1234
Q ss_pred ceeeEEE
Q 026990 221 GLLGCHF 227 (230)
Q Consensus 221 g~LG~~~ 227 (230)
+.|||.+
T Consensus 749 yQLGFSV 755 (829)
T KOG3605|consen 749 YQLGFSV 755 (829)
T ss_pred hhcccee
Confidence 5566654
No 52
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=95.12 E-value=0.063 Score=48.33 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990 144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
-|-.+|..|..++||++-| ++.||.|+.|||+.+.-.+-.++...++...+ +|.+.+-
T Consensus 29 CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~-eV~IhyN 87 (429)
T KOG3651|consen 29 CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN-EVKIHYN 87 (429)
T ss_pred CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc-ceEEEeh
Confidence 3678899999999999977 89999999999999333456677788876554 5666654
No 53
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=94.70 E-value=0.051 Score=52.93 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=50.4
Q ss_pred eEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 147 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 147 ~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
++|.++...+-|++ -+|+.||+|++|||.-...-++.+...++..+.| ++.+.|+|+.+..-+.+.+
T Consensus 221 IFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~G-KL~lvVlRD~~qtLiNiP~ 288 (1027)
T KOG3580|consen 221 IFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDSQQTLINIPS 288 (1027)
T ss_pred hhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccC-ceEEEEEecCCceeeecCC
Confidence 44566666665554 6799999999999987334568888888877776 5889999987766666655
No 54
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=94.49 E-value=0.086 Score=52.24 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=46.6
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~ 204 (230)
.|..|.+|.+++||++-| |..||+|+.|||.-+--.+-.++.+.++. ..|..|.|++-|+
T Consensus 371 efLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRg 432 (984)
T KOG3209|consen 371 EFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRG 432 (984)
T ss_pred ceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecC
Confidence 578899999999999988 79999999999987111234455555554 4689999999885
No 55
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=94.37 E-value=0.066 Score=54.39 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=44.6
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
++|..|.+|+|+.-. |++||+|+.|||.++.-..|+.+..+++..+ ..|.++|-+
T Consensus 77 viVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~q 131 (1298)
T KOG3552|consen 77 VIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQ 131 (1298)
T ss_pred eEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEec
Confidence 578899999999875 9999999999999933345888888888754 357777766
No 56
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=93.17 E-value=0.25 Score=43.89 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=48.7
Q ss_pred CCCceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 143 RRPFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 143 ~~p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
.+|+.+|....||+-|+..|| .+.|.|++|||+.+.-++++++...+-.+. ..+.|+|+-
T Consensus 192 kvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANs-hNLIiTVkP 252 (358)
T KOG3606|consen 192 KVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANS-HNLIITVKP 252 (358)
T ss_pred ccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcc-cceEEEecc
Confidence 579999999999999999997 669999999999955578999988765432 346666663
No 57
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=92.85 E-value=0.34 Score=48.11 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=49.4
Q ss_pred cCCCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 142 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 142 ~~~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.+.++.+|..|.+.-+ +- |..||+|+++||+- +..+.||.... .+...|.|+|..++++++.
T Consensus 768 ~~~ql~~ishv~~~~~--ki-l~~gdiilsvngk~--itr~~dl~d~~------eid~~ilrdg~~~~ikipt 829 (955)
T KOG1421|consen 768 IPRQLYVISHVRPLLH--KI-LGVGDIILSVNGKM--ITRLSDLHDFE------EIDAVILRDGIEMEIKIPT 829 (955)
T ss_pred CcceEEEEEeeccCcc--cc-cccccEEEEecCeE--Eeeehhhhhhh------hhheeeeecCcEEEEEecc
Confidence 3457788999977655 33 99999999999999 88888887632 5778899999999888754
No 58
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=90.92 E-value=0.44 Score=43.81 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=46.8
Q ss_pred cCCCceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990 142 IRRPFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 142 ~~~p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
...| ++|..+.++-.|+..|+ =.||-|++|||+.+..-..+++..+|++ .|+.|.++|.
T Consensus 78 Hn~P-vviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~ 137 (505)
T KOG3549|consen 78 HNLP-VVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVK 137 (505)
T ss_pred cCcc-EEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEEEEEeH
Confidence 4456 78899999999999885 6899999999999223356788888865 6778888886
No 59
>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]
Probab=90.92 E-value=0.42 Score=49.68 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=37.8
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEE
Q 026990 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVV 200 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~ 200 (230)
.|..|.++|||..||+++||.|+.+||.. +. ...++.+++... |..+.+.
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~--v~gl~H~ev~~Lll~~-gn~v~~~ 712 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEP--VHGLVHTEVMELLLKS-GNKVTLR 712 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcc--cchhhHHHHHHHHHhc-CCeeEEE
Confidence 46789999999999999999999999998 54 456666666543 3344443
No 60
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=89.39 E-value=0.7 Score=44.50 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=46.4
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
.++|..+..|+.+.+.| |+.||.|..+||+.+......++..++....| .++++|.-
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G-~itfkiiP 204 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG-SITFKIIP 204 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC-cEEEEEcc
Confidence 36788899999999988 58899999999999445678999999987665 67777653
No 61
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=88.26 E-value=0.75 Score=47.35 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=44.3
Q ss_pred CCceEEEEecCCChhhhcC-CCCCCEEEEECCee-CCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.-+++|.+|.+|++|+.-| |++||.+++|||.. +++ +-+....++. ..|..|.+.|...|
T Consensus 959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGi-sQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGI-SQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred ccceEEEEeccCCccccccccccCceeeeecCcccccc-cHHHHHHHHh-ccCCeEEEehhhhh
Confidence 3578999999999998876 89999999999998 433 2333444443 45677888886543
No 62
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=84.94 E-value=1.1 Score=41.88 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=41.4
Q ss_pred CCCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990 143 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 143 ~~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
.+| +.|..+.+|-.|+++| |-.||.|++|||....-.+.++....|+. .|+.|.+.|+
T Consensus 109 kMP-IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr-aGkeV~levK 167 (506)
T KOG3551|consen 109 KMP-ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR-AGKEVLLEVK 167 (506)
T ss_pred CCc-eehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh-hCceeeeeee
Confidence 345 6788899999998876 78999999999988222345555566654 5677666554
No 63
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=83.64 E-value=1.8 Score=40.48 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=34.5
Q ss_pred ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q 026990 146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRK 191 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~ 191 (230)
++.|.+|...||+.. -||.+||+|.++||-+ +.+.++-.+.++.
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcp--V~~v~dW~ecl~t 265 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCP--VHKVSDWLECLAT 265 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcc--cCCHHHHHHHHHh
Confidence 478999999999843 4999999999999999 6665555555543
No 64
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=80.21 E-value=3.4 Score=39.81 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=38.4
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCee-CCCCCHHHHHHHHhh--CCCCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRK--NQGNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~--~~g~~v~l~V~R~ 204 (230)
+++|.++.+++.-+.-| |.+||.|++||.+. .|..+- +....|+. +...++.++|-..
T Consensus 278 gIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd-~AVrvLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 278 GIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSND-QAVRVLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred ceEEeeeccCceeeccCccCccceEEEeeecchhhcCch-HHHHHHHHHhccCCCeEEEEeec
Confidence 47788999887665555 99999999999998 333333 33344443 1223677777653
No 65
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=78.22 E-value=2.9 Score=35.13 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFG 173 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~In 173 (230)
....|+.|..||||+++|+.-|+.|+++-
T Consensus 122 ~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 122 GKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 44689999999999999999999999884
No 66
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=72.79 E-value=8.8 Score=35.12 Aligned_cols=79 Identities=13% Similarity=-0.009 Sum_probs=51.1
Q ss_pred EEEe-cCCChhhhcCCCCC-CEEEE-ECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-CCCCcce
Q 026990 149 IDEI-TDASPAAEDGLQLG-DQVLK-FGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQGRGL 222 (230)
Q Consensus 149 V~~V-~~~SPA~~AGL~~G-D~Iv~-Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R--~g~~~~l~l~p~-~~~g~g~ 222 (230)
|..| .+++|++.|+|-+. |.|+- =+|....+ ...+|..++....+-++.+.+.. +...+.+++.+. -|++.|.
T Consensus 190 ilnV~I~d~p~a~a~l~PdEdyi~gs~dg~~~~~-ge~~l~Dv~es~~n~pl~Ly~yn~i~d~~R~~T~~~~~h~g~~g~ 268 (417)
T COG5233 190 ILNVSIQDKPPAYALLSPDEDYIDGSSDGQPLEI-GELDLEDVNESPVNLPLSLYYYNPIDDQERAKTERDGVHKGIVGI 268 (417)
T ss_pred eeeeecCCCchhhcccCCcccccccCCCcccccc-hhhHHHHHhhcccCCceEEEEEecccccccceeeccCccccCccc
Confidence 5566 78999999999883 33332 24544111 23345555555666777787774 456667777775 5989999
Q ss_pred eeEEEE
Q 026990 223 LGCHFR 228 (230)
Q Consensus 223 LG~~~~ 228 (230)
|||.+.
T Consensus 269 lgc~vg 274 (417)
T COG5233 269 LGCQVG 274 (417)
T ss_pred cccccc
Confidence 999753
No 67
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=71.28 E-value=2.5 Score=31.88 Aligned_cols=40 Identities=30% Similarity=0.394 Sum_probs=30.0
Q ss_pred HHHHHHHhccCCC---CCCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 026990 24 MNAIIDRLSQSNG---PGLSGNLVDSEGFPRTDIDIHLVRSERR 64 (230)
Q Consensus 24 l~~l~~~L~~~~~---v~m~~~Lvd~eGFPR~DiDv~~vR~~R~ 64 (230)
+.++..+|+..+| +++=||.+=.|.=|-|||||. |.-...
T Consensus 11 lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDIL-Vef~~~ 53 (97)
T COG1669 11 LRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDIL-VEFEPG 53 (97)
T ss_pred HHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeE-EeecCC
Confidence 6677777764454 588899999999999999985 444333
No 68
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=70.10 E-value=5.9 Score=28.67 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026990 7 KAEIMSLMEKRSALEADMNAIID 29 (230)
Q Consensus 7 ~~~~~~L~~~k~~iE~el~~l~~ 29 (230)
|.+|.+|.++|..||++|.++-.
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~ 23 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEK 23 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988864
No 69
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=69.98 E-value=4.4 Score=30.38 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 026990 18 SALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQL 86 (230)
Q Consensus 18 ~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~ 86 (230)
.++-..|+.+..-+-....+-.=||.+..-+.|-+|||+.-.-. .. +.+.+.++.++++.|..
T Consensus 3 ~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~-~~-----~~~~~~~l~~l~~~l~~ 65 (114)
T cd05402 3 EEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGP-NH-----RVDREDFLRKLAKLLKK 65 (114)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecccccCCCCCCCCeeEEEEeC-CC-----CccHHHHHHHHHHHHHh
Confidence 33444444444433222346677899999999999999763311 11 46788888888887764
No 70
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.55 E-value=25 Score=28.79 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENI 84 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L 84 (230)
++++-.+|..+|++||..|..+...+.... .-+-...--+..|.+|++.|...||..-
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE---------------------~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAE---------------------NLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567889999999999999999999886521 1234455668899999999999988643
No 71
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=68.07 E-value=24 Score=32.17 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCc-HHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDID-IHLVRSERRRLAELRNDHKEITEKINEN 83 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiD-v~~vR~~R~~i~~L~ND~k~v~~~ie~~ 83 (230)
.+..++..|-++-.++..++..|-.-|.. .-++..+. ..-.||+..-| |.++=.++.++..|+-|++++.++.|+.
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~-~r~~~~~~--~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLAR-QRVGDEGI--GARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHh-hhhhhccc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777778887777777765 44444322 35688877777 7888999999999999999999999988
Q ss_pred HHH
Q 026990 84 IQL 86 (230)
Q Consensus 84 L~~ 86 (230)
..+
T Consensus 160 ~~E 162 (319)
T PF09789_consen 160 VTE 162 (319)
T ss_pred HHH
Confidence 765
No 72
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=67.97 E-value=30 Score=24.43 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=37.5
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 5 NLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 5 ~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
++|+ ...+|.++-.++..||-.|---+.. +++. .| ..||.+|+.|+++.+
T Consensus 7 elR~~s~eeL~~~l~eLK~ELf~LR~q~a~-g~l~--n~--------------~~ir~vRr~IARi~T 57 (69)
T COG0255 7 ELREKSVEELEEELRELKKELFNLRFQLAT-GQLE--NP--------------HRIREVRRDIARILT 57 (69)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCC--Cc--------------HHHHHHHHHHHHHHH
Confidence 4555 6677888888888888888777754 4444 33 679999999999876
No 73
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.22 E-value=51 Score=25.72 Aligned_cols=57 Identities=18% Similarity=0.433 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENI 84 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L 84 (230)
.+++++..|...|+.+..||-.+...... ++..-.++..|+..++++-.+-+..|
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~-------------------------~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEE-------------------------LRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999998876643 57777888888889988888888777
Q ss_pred HH
Q 026990 85 QL 86 (230)
Q Consensus 85 ~~ 86 (230)
.-
T Consensus 89 el 90 (120)
T PF12325_consen 89 EL 90 (120)
T ss_pred HH
Confidence 64
No 74
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=67.05 E-value=5.1 Score=39.79 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=35.1
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCC
Q 026990 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQG 194 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g 194 (230)
+|-+...|+.|++-|+++|-+|++|||..+=..-.+.+..+|....|
T Consensus 759 iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 759 IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 35566789999999999999999999998111234566666665555
No 75
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=64.31 E-value=76 Score=25.70 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhh
Q 026990 11 MSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHS 89 (230)
Q Consensus 11 ~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~h~ 89 (230)
..|.++|.+|+.++......+.. +.+.+| ..+|..+....+.....+..-.+..+.+|+.+|..+-.
T Consensus 42 ~~L~~~r~eL~~~i~~~~~~~~~-----------~~~~~~-D~~D~a~~~~~~~~~l~~~~r~~~~L~~I~~AL~Ri~~ 108 (151)
T PRK10778 42 RILEAWRNQLRDEVDRTVTHMQD-----------EAANFP-DPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVED 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----------ccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556666677766665554432 111233 56688888888877777777778888999999988754
No 76
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=59.80 E-value=16 Score=34.39 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCC----CCCCCCCCCCCCCCCCC
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQS-NGP----GLSGNLVDSEGFPRTDI 54 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~-~~v----~m~~~Lvd~eGFPR~Di 54 (230)
+++++-.+|.++|+.||+.|+-.- |..+ .|+ +-+-.--|.||||-+|=
T Consensus 29 el~~kkqel~qkkk~i~kkielk~--~edsdag~~~eyd~spaawdkd~fpws~e 81 (695)
T KOG0353|consen 29 ELREKKQELIQKKKAIEKKIELKC--LEDSDAGASNEYDRSPAAWDKDDFPWSDE 81 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--cccccccccccccCCccccccCCCCCchH
Confidence 577888899999999999887322 2221 121 22334479999999985
No 77
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=55.91 E-value=86 Score=23.59 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
-.|.+.|++.++--...+.|.+-| .+||-||..+..||-+|+.=+.+.+
T Consensus 46 ~~LL~~i~~~ee~R~~~E~lQdkL-------------------------~qi~eAR~AlDalR~eH~~klrr~a 94 (96)
T PF12210_consen 46 PQLLKYIQEQEEKRVYYEGLQDKL-------------------------AQIKEARAALDALREEHREKLRRQA 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556665555555556666655 4699999999999999998776654
No 78
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=53.89 E-value=68 Score=21.92 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
++..++..|..+.+.++.+|+.+...|++ .++--.-|= + -|-..|.+...++..+..|-..|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n-~~F~~kAP~-----------e--Vve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSN-ENFVEKAPE-----------E--VVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCS-TTHHHHS-C-----------C--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccccccCCH-----------H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999965 333323331 1 245667777666665555544443
No 79
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=53.78 E-value=48 Score=23.13 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=32.4
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhch
Q 026990 4 TNLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRND 72 (230)
Q Consensus 4 ~~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND 72 (230)
.++++ ...+|.++-.++..|+-.|- ++...| .+..| ..||.+|+.|+++.+=
T Consensus 7 ~elr~ls~~eL~~~l~elk~elf~LR--fq~atg-ql~n~--------------~~ir~~RrdIARikTi 59 (67)
T CHL00154 7 TDIIDLTDSEISEEIIKTKKELFDLR--LKKATR-QNFKP--------------HLFKHKKHRLAQLLTL 59 (67)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHH--HHHHhC-cccCh--------------HHHHHHHHHHHHHHHH
Confidence 34444 56666666666777666665 222111 33333 7899999999998763
No 80
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=53.40 E-value=9.5 Score=34.90 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.2
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCee
Q 026990 148 VIDEITDASPAAEDGLQLGDQVLKFGTVE 176 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~ 176 (230)
.|..|.+.+||+++|.-.||.|+-||+-+
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp 94 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDP 94 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCc
Confidence 46678899999999999999999999876
No 81
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=52.91 E-value=49 Score=22.77 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=32.6
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 5 NLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 5 ~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
++++ ...+|.++-.++.+||-.|--... .|. +..| ..||..|+.|+++.+
T Consensus 5 elr~ls~~eL~~~l~~lkkeL~~lR~~~~--~~~-~~n~--------------~~i~~~rk~IARi~T 55 (66)
T PRK00306 5 ELRELSVEELNEKLLELKKELFNLRFQKA--TGQ-LENT--------------HRLREVRRDIARIKT 55 (66)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHH--hCC-CcCc--------------HHHHHHHHHHHHHHH
Confidence 3444 566677777777777776663332 221 3444 789999999999876
No 82
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=51.86 E-value=54 Score=21.86 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
...+|.++=.++.+||-.|- ++...|. +..| ..+|..|+.|+++.+
T Consensus 7 s~~eL~~~l~~l~~elf~Lr--~q~~~~~-~~~~--------------~~~~~~Rr~IARi~T 52 (57)
T cd00427 7 SDEELQEKLDELKKELFNLR--FQKATGQ-LENP--------------HRIRKVRKDIARIKT 52 (57)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHHHCC-CcCc--------------HHHHHHHHHHHHHHH
Confidence 34455555555555655554 2221121 4444 789999999999875
No 83
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=50.57 E-value=74 Score=21.29 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
...+|.++=.++.+||-.|---... +.+ ..| ..||.+|+.|+++.+
T Consensus 8 s~~eL~~~l~elk~eL~~Lr~q~~~-~~l--~n~--------------~~ir~~Rr~IARi~T 53 (58)
T PF00831_consen 8 SDEELQEKLEELKKELFNLRFQKAT-GQL--ENP--------------HRIREIRRDIARILT 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SSS--SCC--------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-ccc--ccc--------------cHHHHHHHHHHHHHH
Confidence 4556666666666666666554433 222 333 789999999999875
No 84
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.52 E-value=37 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGP 37 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v 37 (230)
+.+..|.++|..|-.+++..+..+++ +|+
T Consensus 21 erIERlEeEk~~i~~dikdvy~eakg-~GF 49 (85)
T COG3750 21 ERIERLEEEKKTIADDIKDVYAEAKG-HGF 49 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 36778888888888999999999865 443
No 85
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=47.90 E-value=1.2e+02 Score=22.89 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLH 88 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~h 88 (230)
--..|.++|.+|..++.....-+.. ..+.+....|..+....|.--..+..-.+..+.+|+.+|..+-
T Consensus 9 ~k~~L~~~~~~L~~~i~~~~~~~~~------------~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~ 76 (110)
T TIGR02420 9 FRKILLRWKQELLEEADKTLEHLQE------------ESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIE 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------------ccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777778888887777665532 1234445568888877777555555555667788888888763
No 86
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=47.31 E-value=1.4e+02 Score=26.46 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 7 KAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 7 ~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
..++..|..+.+.++++++.+...+.. .-.|-.++-+-..| |+..-=--++-.++.++..+++...+....++
T Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~~~~-E~~g~~~tg~~G~G-p~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 141 DAEIAALQAEIDQLEKEIDRAQQEAQC-EIFGTGGTGVPGKG-PRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346677777777788888877777754 23333555555566 66554444445555666667776666666665
No 87
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.23 E-value=1.6e+02 Score=29.70 Aligned_cols=84 Identities=17% Similarity=0.281 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCC---CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHH
Q 026990 5 NLKAEIMSLMEKRS-------ALEADMNAIIDRLSQSNG---PGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHK 74 (230)
Q Consensus 5 ~~~~~~~~L~~~k~-------~iE~el~~l~~~L~~~~~---v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k 74 (230)
+++..|.+|.++|. .+..+|..|.++|.-.-. -+.+.+|++.+|=+--.|.-..+-....-+..|++..+
T Consensus 164 elr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~ 243 (660)
T KOG4302|consen 164 ELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKK 243 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56778888888775 466788899999954322 26788999999955566777888888888999999999
Q ss_pred HHHHHHHHHHHHHh
Q 026990 75 EITEKINENIQLLH 88 (230)
Q Consensus 75 ~v~~~ie~~L~~~h 88 (230)
+-+.++...-.+++
T Consensus 244 qr~~kl~~l~~~~~ 257 (660)
T KOG4302|consen 244 QRLQKLQDLRTKLL 257 (660)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888876555544
No 88
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=46.35 E-value=97 Score=24.90 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHH---------------------HHHHHHHHhhchHH
Q 026990 16 KRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR---------------------SERRRLAELRNDHK 74 (230)
Q Consensus 16 ~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR---------------------~~R~~i~~L~ND~k 74 (230)
-++..+++++.+.++|.. .|+- =+.|||.+|+...+.+ .++.=-.|.|+|+.
T Consensus 55 ~~~~~~~~i~~l~~ll~~-e~ip------~P~~~~~~~v~~~~~~lfsD~~~l~~~~~~~~~~~~~~~~al~~s~R~Dl~ 127 (166)
T PF11553_consen 55 GLDLSQKQIEQLEKLLKE-EGIP------VPPGFPESDVTDSAPPLFSDKFMLFYISFMSQAGITNYGRALSSSVRNDLR 127 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-------------------GGGS-G--HHHHHHHHHHHHHHHHHHHHHHHHH--SHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCC------CCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356789999999999987 4442 3478998888766553 34455568899988
Q ss_pred HHHHHHHHHHHHHh
Q 026990 75 EITEKINENIQLLH 88 (230)
Q Consensus 75 ~v~~~ie~~L~~~h 88 (230)
+...+.-....+++
T Consensus 128 ~~f~~~~~~~~~~~ 141 (166)
T PF11553_consen 128 AFFMKFLMEALELY 141 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 87766644444444
No 89
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=45.35 E-value=18 Score=23.28 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHHH
Q 026990 35 NGPGLSGNLVDSEGFPRTDIDIHLV 59 (230)
Q Consensus 35 ~~v~m~~~Lvd~eGFPR~DiDv~~v 59 (230)
..+.+-||..-.+--|.+|||+.-+
T Consensus 18 ~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 18 YEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred cEEEEECCcCCCCCCCCCCEEEEEE
Confidence 3477888998877789999998643
No 90
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=43.83 E-value=17 Score=32.21 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhccCC-----CCCCCCCCCCCCCCCCCCCcHHHH
Q 026990 19 ALEADMNAIIDRLSQSN-----GPGLSGNLVDSEGFPRTDIDIHLV 59 (230)
Q Consensus 19 ~iE~el~~l~~~L~~~~-----~v~m~~~Lvd~eGFPR~DiDv~~v 59 (230)
.|+.+|++..++|..-. +|=+-||.+...-.|.+||||.-|
T Consensus 8 ~i~~~l~~~~~~l~~~l~~~l~~vyLfGS~~~G~~~p~SDIDllvv 53 (262)
T PRK13746 8 EISTQLSEACAVIERHLEPTLLAIHLYGSAVDGGLKPHSDIDLLVT 53 (262)
T ss_pred HHHHHHHHHHHHHHHhCcccEEEEEEECCcccCCCCCCCceeEEEE
Confidence 56777776666665421 356889999977789999998654
No 91
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.75 E-value=51 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIID 29 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~ 29 (230)
+++|.+|.+|.++|.++|..|.-|..
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~ 38 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLER 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998887754
No 92
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=42.29 E-value=56 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
+.+..|.++|+.|-.+++..+...++
T Consensus 11 eRiErLEeEk~~i~~dikdVyaEAK~ 36 (74)
T PF10073_consen 11 ERIERLEEEKKAISDDIKDVYAEAKG 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999976
No 93
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=42.17 E-value=1.5e+02 Score=24.60 Aligned_cols=59 Identities=12% Similarity=0.270 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINE 82 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~ 82 (230)
+.+.-|..++..++++|++|...|+.-. +||.-|++=+-|+.|-.+...+..+..+|.+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~ka----------------d~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKA----------------DDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999886521 3677799999999998888888777777665
No 94
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=41.39 E-value=79 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQS 34 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~ 34 (230)
++-.+.+.+|.++=+.||..++.|..+|.+.
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~e 68 (75)
T TIGR02976 38 TDDQALLQELYAKADRLEERIDTLERILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4456789999999999999999999999873
No 95
>PF09267 Dict-STAT-coil: Dictyostelium STAT, coiled coil; InterPro: IPR015347 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents a domain found in Dictyostelium STAT proteins. This domain adopts a structure consisting of four long alpha-helices, folded into a coiled coil. It is responsible for nuclear export of the protein []. ; PDB: 1UUR_A 1UUS_A.
Probab=39.81 E-value=1.8e+02 Score=22.56 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
+-.+=++++|+.+|+=+-+...+|+. . +.||=-++++.++ .|+++++.+-+.|+.-+.++
T Consensus 6 ei~~L~~~Q~~~l~kM~~~Q~q~L~~-~----------~~~l~~n~~~~~~---------~Lq~~q~tLkkqid~E~~aL 65 (114)
T PF09267_consen 6 EIHKLHSEQEETLEKMIHAQKQFLNR-K----------PQPLNNNNIETLQ---------ELQQEQTTLKKQIDEEMSAL 65 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-S-----------SS-SCCCCHHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-C----------CCCCCCchHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 34455789999999999999999976 3 3445556676665 89999999999998877766
Q ss_pred h
Q 026990 88 H 88 (230)
Q Consensus 88 h 88 (230)
-
T Consensus 66 ~ 66 (114)
T PF09267_consen 66 N 66 (114)
T ss_dssp H
T ss_pred H
Confidence 4
No 96
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=39.36 E-value=91 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPG 38 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~ 38 (230)
++-.+.|.+|.++=+.||..+++|..+|.+ .+++
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILda-e~P~ 71 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERILDA-EHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCC
Confidence 345678999999999999999999999987 3443
No 97
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=39.27 E-value=2.9e+02 Score=24.80 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC----CCCCCCCCCCCCCcHHHH-HHHHHHHHHhhchHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSG----NLVDSEGFPRTDIDIHLV-RSERRRLAELRNDHKEITEK 79 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~----~Lvd~eGFPR~DiDv~~v-R~~R~~i~~L~ND~k~v~~~ 79 (230)
+-.+.+.+|.++=+.++.|.+++..+|..+....... ..++.+.=|..+..-..+ ...-.++..+..|+.-.|++
T Consensus 161 ~N~~~i~~Lee~I~rLk~E~~~W~~~l~~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~le~~iD~ 240 (301)
T PF08202_consen 161 ENEENIAELEEKIKRLKEERQAWAQLLKPYQDPDKEWSKIESSRDSEAKIDSVLEDPETYSKILQRLSQVQSDLEFKIDE 240 (301)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhhccCcccccccccccccccccccccccChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 4567889999999999999999999996543322222 233333333333322111 34556677778888888999
Q ss_pred HHHHHHHHhh
Q 026990 80 INENIQLLHS 89 (230)
Q Consensus 80 ie~~L~~~h~ 89 (230)
+....|.++.
T Consensus 241 L~~~vH~L~~ 250 (301)
T PF08202_consen 241 LADSVHKLEQ 250 (301)
T ss_pred HHHHHHHHHH
Confidence 9888888876
No 98
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=38.86 E-value=1.3e+02 Score=20.90 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
...+|.++-.++.+||-.|--.-. .|-.+..| ..||..|+.|+++.+
T Consensus 13 s~~eL~~~l~elk~eLf~LR~q~~--~~~~l~n~--------------~~ir~~Rk~IARi~T 59 (69)
T PRK14549 13 SPEEREEKLEELKLELLKERAQAA--MGGAPENP--------------GRIREIRRTIARILT 59 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--hCcCcccc--------------HHHHHHHHHHHHHHH
Confidence 445555555555566555543221 12224444 789999999999876
No 99
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=38.29 E-value=21 Score=35.39 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=31.6
Q ss_pred eEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHh
Q 026990 147 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGR 190 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~ 190 (230)
-+|.++.++|||...+ |..||.|++||+.. +-.| ++..++.
T Consensus 227 h~~s~~~e~Spad~~~kI~dgdEv~qiN~qt--vVgw-qlk~vV~ 268 (638)
T KOG1738|consen 227 HVTSKIFEQSPADYRQKILDGDEVLQINEQT--VVGW-QLKVVVS 268 (638)
T ss_pred eeccccccCChHHHhhcccCccceeeecccc--cccc-hhHhHHh
Confidence 3578899999998755 79999999999998 6666 3334433
No 100
>PRK09458 pspB phage shock protein B; Provisional
Probab=37.29 E-value=1e+02 Score=22.10 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPG 38 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~ 38 (230)
+-.+.|.+|.++=+.|+..|++|..+|.+ ..++
T Consensus 39 ~d~~~L~~L~~~A~rm~~RI~tLE~ILDa-e~P~ 71 (75)
T PRK09458 39 EEQQRLAQLTEKAERMRERIQALEAILDA-EHPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCC
Confidence 34567999999999999999999999987 4444
No 101
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.69 E-value=98 Score=19.83 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
.++.+...|..+++.+-+|+..|...|.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888888899999999988888774
No 102
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.05 E-value=1.7e+02 Score=23.63 Aligned_cols=55 Identities=27% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
.++.+|.++=..++.++..+...|.+ +...+. .=-++..|..|+...+.+..+|+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~-----L~~~~t--------------~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELAS-----LSSEPT--------------NEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555533 112221 22345677777776655544443
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.44 E-value=2.4e+02 Score=25.85 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCc--HHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDID--IHLVRSERRRLAELRNDHKEITEKINENIQ 85 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiD--v~~vR~~R~~i~~L~ND~k~v~~~ie~~L~ 85 (230)
++..+|+.+||..-.....|...|+. ++-.+.=+..||| +..-|-...||.-+++...-+...|-+.=.
T Consensus 154 DEkeEl~~ERD~yk~K~~RLN~ELn~---------~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 154 DEKEELVTERDAYKCKAHRLNHELNY---------ILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666622 1111222778999 788899999999999998887777765433
No 104
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=34.29 E-value=1.2e+02 Score=22.28 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
...+|.++=.++..||-.|--.. + .| .+..| ..||.+|+.|+++.+
T Consensus 9 S~eEL~e~L~elkkELf~LR~q~-a-tg-ql~n~--------------~~ir~iRR~IARilT 54 (87)
T PRK00461 9 SVEELEKLVIELKAELFTLRFKN-A-TG-SLDQT--------------HKIKEIRKDIARILT 54 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-H-hC-ccccc--------------HHHHHHHHHHHHHHH
Confidence 45556666666666666665222 1 12 22333 789999999999876
No 105
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.18 E-value=2.3e+02 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 60 RSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 60 R~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
+..+..|++|..+|..+.+.|.+.+.++
T Consensus 77 ~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 77 NKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999999888773
No 106
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=33.53 E-value=1.9e+02 Score=21.00 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhh--chHHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELR--NDHKEITEKINE 82 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~--ND~k~v~~~ie~ 82 (230)
.+..++.+|.++++.+++++..+..-|. ++ .....+.-|..|. ||.|++-..+=.
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~---------------~~--------~~~~v~~hI~lLheYNeiKD~gQ~Lig 60 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELI---------------ED--------PEKIVKRHIKLLHEYNEIKDIGQGLIG 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------cC--------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667888999999999999998887761 11 1223333444443 788887766666
Q ss_pred HHHH
Q 026990 83 NIQL 86 (230)
Q Consensus 83 ~L~~ 86 (230)
.|+.
T Consensus 61 ~iA~ 64 (83)
T PF07061_consen 61 LIAD 64 (83)
T ss_pred HHHH
Confidence 6554
No 107
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=33.12 E-value=54 Score=31.65 Aligned_cols=48 Identities=29% Similarity=0.294 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 026990 36 GPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQL 86 (230)
Q Consensus 36 ~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~ 86 (230)
-+|+.+|. .||||-|==..+|-.-=--|-||-+|+|++-++|.+-+-.
T Consensus 176 ~vglg~~~---~G~~RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~ivia 223 (554)
T COG2759 176 VVGLGGPE---NGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVIA 223 (554)
T ss_pred eeccCCcc---CCcccCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEE
Confidence 36777774 6999987522334445567999999999999988776554
No 108
>PRK13666 hypothetical protein; Provisional
Probab=32.71 E-value=50 Score=24.58 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSE--GFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQL 86 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~e--GFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~ 86 (230)
.+..|.+-=+.|+.=|+.+++-|.-+. .-+=...+|.. ||-| -||+ +||. .++ =.++=|.+|.++|+.|.+
T Consensus 12 A~~lL~~DA~kI~~LI~vQ~~nL~~~q-CPlyEEVlDTQmfGlSr-eVdF-Avrl---gli-~~~~Gk~ll~~LE~~Ls~ 84 (92)
T PRK13666 12 ALALLKADAEKILKLIKVQMDNLTMPQ-CPLYEEVLDTQMFGLSR-EVDF-AVRL---GLI-DEEEGKQLLSRLERELSA 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc-CchHHHHHHHHHhhhHH-HHHH-HHHh---ccc-cHHHHHHHHHHHHHHHHH
Confidence 455555666678888887777665431 11111112222 2222 1332 3332 222 247899999999999999
Q ss_pred Hhhhc
Q 026990 87 LHSAR 91 (230)
Q Consensus 87 ~h~~~ 91 (230)
+|.+.
T Consensus 85 L~~a~ 89 (92)
T PRK13666 85 LHEAF 89 (92)
T ss_pred HHHHH
Confidence 99853
No 109
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=32.27 E-value=1.5e+02 Score=19.58 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhc
Q 026990 57 HLVRSERRRLAELRN 71 (230)
Q Consensus 57 ~~vR~~R~~i~~L~N 71 (230)
..+|..|+.|+++.+
T Consensus 37 ~~i~~~Rk~IARi~T 51 (55)
T TIGR00012 37 HRIRQVRRDIARLLT 51 (55)
T ss_pred hHHHHHHHHHHHHHH
Confidence 789999999999865
No 110
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=31.51 E-value=1.2e+02 Score=30.73 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHH----HHHHHHHHHhhchHHHHHHH
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLV----RSERRRLAELRNDHKEITEK 79 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~v----R~~R~~i~~L~ND~k~v~~~ 79 (230)
.+.+.++..+++.+-.+|+.++.+...|. ....|+.+.+..++=|+-+=|..++ +.+|-=.-.++-|.+.||.+
T Consensus 502 ~d~~~~l~r~aev~~~~~~~~~~i~~~~~--~~~~l~~~~i~~~~s~~~~r~~~~l~~l~~~~~elyk~~~k~r~~~~~~ 579 (732)
T KOG4250|consen 502 SDKRTKLLREAEVKSDIEACIKVIQWELE--DLMSLDTEIIHSEKSPYKRRQGAQLESLLERARELYKQLKKRRAEVREL 579 (732)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhh--hhhhhchHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHhchhhhhhc
Confidence 35678999999999999999999998885 3689999999999999977766554 44444444444444444443
No 111
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=30.28 E-value=3.2e+02 Score=24.73 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQ-------SNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITE 78 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~-------~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~ 78 (230)
+--.|+.|...|+.|-.|+..|..-|.. ......+++|-|.+||=-+|..+..+-..=+|+| .|||-=+.
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~~~~d~qrdanrqi---sd~KfKl~ 293 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENTDLHFIDLQRDANRQI---SDYKFKLQ 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccccccccccccHHHhhhHHHHHH---HHHHHHHH
Confidence 3358999999999999999999998832 1246778888888888668888776633333333 45554333
Q ss_pred HHH
Q 026990 79 KIN 81 (230)
Q Consensus 79 ~ie 81 (230)
+-|
T Consensus 294 KaE 296 (302)
T PF09738_consen 294 KAE 296 (302)
T ss_pred HHH
Confidence 333
No 112
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=30.17 E-value=3.8e+02 Score=28.54 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQ 85 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~ 85 (230)
...++.+|.++++.+++|++.+...|++. +.-...| = .-|-.+|.++ .++++-..+|++.|.
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~-~f~~kap-----------~--~~veka~~kl----~~~~~~l~~le~~l~ 901 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNP-SFVQNAP-----------P--AVVEKDRARA----EELREKRGKLEAHRA 901 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCc-hhhhcCC-----------H--HHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 55688899999999999999999999653 2211112 1 2345666666 366777777777777
Q ss_pred HHhh
Q 026990 86 LLHS 89 (230)
Q Consensus 86 ~~h~ 89 (230)
.+..
T Consensus 902 ~L~~ 905 (1052)
T PRK14900 902 MLSG 905 (1052)
T ss_pred HHhc
Confidence 7654
No 113
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.92 E-value=2.6e+02 Score=25.93 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 026990 10 IMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINEN 83 (230)
Q Consensus 10 ~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~ 83 (230)
+..|..+-.++|.++..+.......| ..|+.+|.+|..|+.-+++-+..+...
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~h---------------------P~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNH---------------------PQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655543322 356777777777777776655555433
No 114
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=29.88 E-value=2e+02 Score=29.77 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITE 78 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~ 78 (230)
...++.+|.++.+.+|+||+.+...|++ .++-...|- .-|...|.++..++..++.|.+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n-~~F~~KAP~-------------~vve~e~~kl~~~~~~~~~l~~ 867 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSN-EGFVAKAPE-------------EVVEKEREKLAEYEEKLAKLKE 867 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhhcCCH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5578999999999999999999999965 455445552 2345566666644444444433
No 115
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=29.84 E-value=35 Score=26.42 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCCCCCCCC-CCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026990 12 SLMEKRSALEADMNAIIDRLS-QSNGPGLSGNLVDSEG-FPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLH 88 (230)
Q Consensus 12 ~L~~~k~~iE~el~~l~~~L~-~~~~v~m~~~Lvd~eG-FPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~h 88 (230)
++..+.+.|.+-|+.....+. ....+-+-||+--... -|.+|||+.-+=...... -..+.++++..|+..|....
T Consensus 4 ~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~--~~~~~~~~~~~l~~~L~~~~ 80 (143)
T cd05400 4 EAKERYREIREALKESLSELAGRVAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSF--AEYGPAELLDELGEALKEYY 80 (143)
T ss_pred HHHHHHHHHHHHHHHhcccccccccEEEEEcceeCCCCCCCCCceeEEEEEcCcccc--cccCHHHHHHHHHHHHHHhc
Confidence 445555556666666555431 0123445555555444 248999976441111000 14588899999999988743
No 116
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=29.55 E-value=1.4e+02 Score=22.36 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHh
Q 026990 46 SEGFPRTDIDIHLVRSERRRLAELRN--DHKEITEKINENIQLLH 88 (230)
Q Consensus 46 ~eGFPR~DiDv~~vR~~R~~i~~L~N--D~k~v~~~ie~~L~~~h 88 (230)
+.-||--.+--|.+|.+|-.+...+| |-.++++.++++=.+|.
T Consensus 20 s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Le 64 (94)
T KOG3801|consen 20 SKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLE 64 (94)
T ss_pred HhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46799889999999999999998887 88888888876655543
No 117
>PRK11637 AmiB activator; Provisional
Probab=29.33 E-value=2.1e+02 Score=26.76 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.8
Q ss_pred CCCEEEEE
Q 026990 165 LGDQVLKF 172 (230)
Q Consensus 165 ~GD~Iv~I 172 (230)
.|..|.++
T Consensus 338 ~g~~v~A~ 345 (428)
T PRK11637 338 EGTEVKAI 345 (428)
T ss_pred CCCeEEec
Confidence 34445544
No 118
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.14 E-value=2e+02 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRL 31 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L 31 (230)
..+.+|..+..++|.++.++..+.
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~ 237 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSIT 237 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356677777777777777766544
No 119
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=29.08 E-value=55 Score=28.77 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred cccCCCceEEE-EecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 140 VIIRRPFAVID-EITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 140 ~~~~~p~~~V~-~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
+.+.+||.+-+ +..----|.-.||++||.|--+|+..+.....+.+...|+..+..--.+.+.|+.+
T Consensus 199 mglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~~Ql~r~PrpFPkl~i~~~~k 266 (293)
T KOG0673|consen 199 MGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQEQLQRPPRPFPKLKINPEVK 266 (293)
T ss_pred cccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHHHHHhcCCCCCCceeeccccc
Confidence 34566664322 12223357778999999999999988333457778888876554344566667654
No 120
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.79 E-value=3.2e+02 Score=23.00 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
+-+-.|..+=|.||..+..+++.|... .-+-+....++.-|.-|++.|-+++.+.|..+
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q---------------------~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ll 137 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQ---------------------QEQAPALKKDVTKLKQDIKSLDKKLDKILELL 137 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhhCchHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888889999989888621 12346667778888888888888888888765
Q ss_pred h
Q 026990 88 H 88 (230)
Q Consensus 88 h 88 (230)
.
T Consensus 138 E 138 (189)
T TIGR02132 138 E 138 (189)
T ss_pred h
Confidence 4
No 121
>PRK13694 hypothetical protein; Provisional
Probab=28.72 E-value=1.2e+02 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
+.+..|.++|+.|-.+++..+..-++
T Consensus 19 ERIERLEeEkk~i~~dikdVyaEAK~ 44 (83)
T PRK13694 19 ERIERLEEEKKTISDDIKDVYAEAKG 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677778888888888888888865
No 122
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=28.30 E-value=1.5e+02 Score=20.67 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 026990 14 MEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67 (230)
Q Consensus 14 ~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~ 67 (230)
..+...++..|-.+.--|.+ |+.+|+| .||..|..++
T Consensus 26 ~~~~~~l~E~L~~~LlkLD~----------I~~~g~~-------~iR~~RK~~v 62 (76)
T PF02179_consen 26 EKEYLRLSEMLMQLLLKLDS----------IETEGNP-------EIREKRKQAV 62 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----------CECSSSH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC----------cccCCCH-------HHHHHHHHHH
Confidence 44455566666666555644 3567777 5666665544
No 123
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.63 E-value=4.8e+02 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++++++.+|.++..++..+|+.+...|..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~ 359 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKK 359 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999999999999998888754
No 124
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.15 E-value=61 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAII 28 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~ 28 (230)
+.+++|.++|..++.+|+.|.
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~Le 24 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLE 24 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 125
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=26.85 E-value=1.1e+02 Score=24.81 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++.++++|.++|+.+|+.++.|-++|..
T Consensus 58 ~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 58 AIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999999999864
No 126
>PRK03760 hypothetical protein; Provisional
Probab=26.81 E-value=87 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=18.1
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVL 170 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv 170 (230)
|...|.++.. +-+++.|+++||.|.
T Consensus 89 ~a~~VLEl~a-G~~~~~gi~~Gd~v~ 113 (117)
T PRK03760 89 PARYIIEGPV-GKIRVLKVEVGDEIE 113 (117)
T ss_pred cceEEEEeCC-ChHHHcCCCCCCEEE
Confidence 4456777755 456678999999983
No 127
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=26.67 E-value=84 Score=25.53 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026990 7 KAEIMSLMEKRSALEADMNAIIDRLSQSN 35 (230)
Q Consensus 7 ~~~~~~L~~~k~~iE~el~~l~~~L~~~~ 35 (230)
+.++.++..+..+|+.+|+.+.+.|+...
T Consensus 2 ~~~~~~~e~~~~~l~~~i~~~~~~l~~dy 30 (154)
T PF13015_consen 2 EKEIDEAERKLSDLESKIRELEDDLNKDY 30 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46788999999999999999999997543
No 128
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=26.00 E-value=1.8e+02 Score=19.91 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhh
Q 026990 57 HLVRSERRRLAELRNDHKEITEKINENIQLLHS 89 (230)
Q Consensus 57 ~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~h~ 89 (230)
-+|+.+.+.|.=||..|.+....++.-+..|..
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~ 35 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999988888877764
No 129
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.86 E-value=1.4e+02 Score=21.98 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026990 9 EIMSLMEKRSALEADMNAIIDR 30 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~ 30 (230)
++.+|.++.+.+|.++.++.+.
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~ 92 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDE 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 130
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=25.71 E-value=2.5e+02 Score=23.85 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC---CCCCcHHHHHHHHHHHHHhhchHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFP---RTDIDIHLVRSERRRLAELRNDHKEITEKI 80 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFP---R~DiDv~~vR~~R~~i~~L~ND~k~v~~~i 80 (230)
.+..+++++.++=++|++-|+.+...+....+..++...-.-+||| .+|=| -.++..=+=+.|||.|-.+|-.-+
T Consensus 124 ~ilsk~~~i~~k~~~L~egi~~i~~~~~~~~~~~~~~~~~~w~~l~~l~s~~~~-~~l~~~y~Ll~CfrrD~hKVetyL 201 (214)
T PF00103_consen 124 AILSKAKEIEEKIKELLEGIKKILSKMQDGPEITENEDYPVWSGLPSLQSSDED-SRLFAFYNLLHCFRRDSHKVETYL 201 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTSTTTSSHHHC---GGCHHHH-SSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhcccchh-hHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455777788888888888888887775322334444444445565 23323 334555567899999986665443
No 131
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=25.61 E-value=1.7e+02 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHhh
Q 026990 65 RLAELRNDHKEITEKINENIQLLHS 89 (230)
Q Consensus 65 ~i~~L~ND~k~v~~~ie~~L~~~h~ 89 (230)
+...++.+..++.+++.+..+.+|.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (448)
T PF05761_consen 363 SSSELRPDISELRKERRELRREMKE 387 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Confidence 7778888888888888888888775
No 132
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=25.53 E-value=1.5e+02 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHhhchHHHHHHHHHHHHHH
Q 026990 65 RLAELRNDHKEITEKINENIQL 86 (230)
Q Consensus 65 ~i~~L~ND~k~v~~~ie~~L~~ 86 (230)
.+.-|++|+++|+..-|..|+.
T Consensus 27 EllkLe~DLkEvIsLTedLlqT 48 (262)
T KOG3026|consen 27 ELLKLEKDLKEVISLTEDLLQT 48 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999999988875
No 133
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.53 E-value=3.4e+02 Score=21.43 Aligned_cols=33 Identities=6% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhh
Q 026990 57 HLVRSERRRLAELRNDHKEITEKINENIQLLHS 89 (230)
Q Consensus 57 ~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~h~ 89 (230)
+++..+|.++..-++.+.+-.+.+...|.+++.
T Consensus 56 ~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 56 QQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999998886
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.99 E-value=2.7e+02 Score=25.25 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHH
Q 026990 59 VRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 59 vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
|...|+.+..++..+.++-..|+
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 135
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.92 E-value=2.4e+02 Score=30.05 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
.++.+||.+|+++..||..+.. .+ . .+++.+..|..|.++++-.+..++
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~--~~-~----------------------e~~~v~~~i~~le~~~~~~~~~~~ 700 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK--RR-K----------------------EVSSVESKIHGLEMRLKYSKLDLE 700 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hh-h----------------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998 33 1 356666666666666655555444
No 136
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=1.4e+02 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQS 34 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~ 34 (230)
++.+.+..++.+|..+|.+|+..-.+|..-
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~El 46 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999764
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.60 E-value=5.2e+02 Score=23.26 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
+..-+.+|.+++..|+.|+..+-+.... -.++|--.+..+|.++..+..++.+.-.+++
T Consensus 175 l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-----------------~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 175 LDELLPKLRERKAELEEELENLKQLVEE-----------------IESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888777643 3457778888888888777777664444443
No 138
>PLN02943 aminoacyl-tRNA ligase
Probab=24.25 E-value=3.1e+02 Score=28.82 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQ 85 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~ 85 (230)
...++.+|.++.+.+|+||+.+...|++ .++--+.|- .-|-.-|.++. ++++-..+|++.|.
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN-~~F~~KAP~-------------evv~~e~~kl~----~~~~~l~~~~~~l~ 948 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSS-PKFVEKAPE-------------DVVRGVREKAA----EAEEKIKLTKNRLA 948 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhhcCCH-------------HHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5678899999999999999999999965 444444442 23445555555 55555566666666
Q ss_pred HHh
Q 026990 86 LLH 88 (230)
Q Consensus 86 ~~h 88 (230)
.+.
T Consensus 949 ~l~ 951 (958)
T PLN02943 949 FLK 951 (958)
T ss_pred HHh
Confidence 543
No 139
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.07 E-value=1e+02 Score=20.63 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAI 27 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l 27 (230)
.+.+++++.++-+++|+|++++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4557777777778888887764
No 140
>COG4838 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=89 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.6
Q ss_pred hchHHHHHHHHHHHHHHHhhhc
Q 026990 70 RNDHKEITEKINENIQLLHSAR 91 (230)
Q Consensus 70 ~ND~k~v~~~ie~~L~~~h~~~ 91 (230)
+-|=|.+|..+|+.|..+|.+.
T Consensus 68 ~e~GKqll~~LEkeLs~LHea~ 89 (92)
T COG4838 68 EEDGKQLLSTLEKELSALHEAF 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999853
No 141
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=23.72 E-value=59 Score=30.72 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=27.0
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEEC-Cee
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFG-TVE 176 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~In-g~~ 176 (230)
+.|..|.++|.++..|+.+||.++.|| +..
T Consensus 3 ~~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~ 33 (414)
T COG1625 3 AKISKVGGISGADCDGFEEGDYLLKVNPGFG 33 (414)
T ss_pred cceeeccCCCcccccCccccceeeecCCCCC
Confidence 467789999999999999999999999 665
No 142
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.44 E-value=1.4e+02 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026990 8 AEIMSLMEKRSALEADMNAI 27 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l 27 (230)
.++.+|.++.++++.+++.+
T Consensus 31 ~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 31 KEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444
No 143
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=23.41 E-value=2.6e+02 Score=19.38 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.+|..|+++|+.+...|+.....+..
T Consensus 6 ~~L~~Lv~~R~~~~~kLE~a~~~~~~ 31 (85)
T PF14703_consen 6 SKLEKLVEEREKAVRKLESAESKYLK 31 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999988877654
No 144
>PF12943 DUF3839: Protein of unknown function (DUF3839); InterPro: IPR024365 This is a family of uncharacterised proteins that are found in Trichomonas.
Probab=23.28 E-value=61 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.2
Q ss_pred HHHHHHHhhchHHHHHHHHHH
Q 026990 62 ERRRLAELRNDHKEITEKINE 82 (230)
Q Consensus 62 ~R~~i~~L~ND~k~v~~~ie~ 82 (230)
....|-++||||.++.++.|+
T Consensus 213 svKeieRmRnDyadLkke~ek 233 (242)
T PF12943_consen 213 SVKEIERMRNDYADLKKEAEK 233 (242)
T ss_pred hHHHHHHhhccHHHHHHHhhc
Confidence 457899999999999998875
No 145
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.08 E-value=8e+02 Score=24.86 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=42.2
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHH
Q 026990 8 AEIMSLMEKRS-------ALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKI 80 (230)
Q Consensus 8 ~~~~~L~~~k~-------~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~i 80 (230)
..+.+|.++|+ ++=.||+.+...|.. .+++..++.. ++.... .-.+=..|.+|..||+-+..=.+++
T Consensus 110 ~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g--~~~~~~~~~~---D~~dls-l~kLeelr~~L~~L~~ek~~Rlekv 183 (660)
T KOG4302|consen 110 PYLEGLRKQKDERRAEFKELYHQIEKLCEELGG--PEDLPSFLIA---DESDLS-LEKLEELREHLNELQKEKSDRLEKV 183 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccCCccccc---Cccccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554 345566666677743 2555554432 222222 2456677888888887666555555
Q ss_pred HHHHHHHh
Q 026990 81 NENIQLLH 88 (230)
Q Consensus 81 e~~L~~~h 88 (230)
......+|
T Consensus 184 ~~~~~~I~ 191 (660)
T KOG4302|consen 184 LELKEEIK 191 (660)
T ss_pred HHHHHHHH
Confidence 55555555
No 146
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=22.98 E-value=3.7e+02 Score=20.93 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLH 88 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~h 88 (230)
-=..|...|++|..++..-...+.. ..+-||. -.|...-...|.....+++=.+.++.+|+..|..+-
T Consensus 9 fk~~L~~~k~~l~~~~~~~~~~~~~-----------~~~~~~d-~aD~a~~~~~~~~~~~~~~r~r~~l~~i~~al~rIe 76 (120)
T COG1734 9 FKNKLLEWKKDLLEELEQTEEHLQD-----------ENEASPD-PADRATQEEERELELRLRDRERKLLRKIESALDRIE 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhcCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888899999999988888864 1233333 567777778889999999999999999999998765
Q ss_pred h
Q 026990 89 S 89 (230)
Q Consensus 89 ~ 89 (230)
.
T Consensus 77 ~ 77 (120)
T COG1734 77 E 77 (120)
T ss_pred c
Confidence 4
No 147
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.89 E-value=6.1e+02 Score=24.35 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIID 29 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~ 29 (230)
+++++.+|..++.+++.+++++..
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555444
No 148
>PRK10132 hypothetical protein; Provisional
Probab=22.77 E-value=1.2e+02 Score=23.25 Aligned_cols=24 Identities=8% Similarity=0.364 Sum_probs=19.2
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHH
Q 026990 63 RRRLAELRNDHKEITEKINENIQL 86 (230)
Q Consensus 63 R~~i~~L~ND~k~v~~~ie~~L~~ 86 (230)
+..+..|+.|++.|++.+|+.|..
T Consensus 11 ~~q~e~L~~Dl~~L~~~le~ll~~ 34 (108)
T PRK10132 11 DDGVQDIQNDVNQLADSLESVLKS 34 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999887754
No 149
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=22.72 E-value=1.4e+02 Score=16.15 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 026990 16 KRSALEADMNAIIDRL 31 (230)
Q Consensus 16 ~k~~iE~el~~l~~~L 31 (230)
.|+++|++++.|.+-.
T Consensus 2 akk~lEa~~qkLe~e~ 17 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEK 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4667777777766543
No 150
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=22.43 E-value=2.8e+02 Score=20.83 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=19.1
Q ss_pred CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEE
Q 026990 164 QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVV 200 (230)
Q Consensus 164 ~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~ 200 (230)
+.||+|.+-+.+. |...+..|..-+.......|.|+
T Consensus 1 ~~~DVi~~~~~i~-Nl~kl~~Fi~nv~~~k~d~IrIv 36 (98)
T PF14275_consen 1 KNNDVINKHGEIE-NLDKLDQFIENVEQGKPDKIRIV 36 (98)
T ss_pred CCCCEEEeCCeEE-eHHHHHHHHHHHhcCCCCEEEEE
Confidence 4689998843332 34445555555544333344443
No 151
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=21.98 E-value=3.5e+02 Score=28.49 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKI 80 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~i 80 (230)
...++.+|.++.+.+|+|++.+...|++ .++--..|- .-|-..|.++..++-.+..|.+.|
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N-~~F~~kAp~-------------~vve~e~~kl~~~~~~l~~l~~~l 987 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISI-PNYEDKVPE-------------DVRKLNDEKIDELNEEIKQLEQAI 987 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999999999999965 344434442 234556666665555444444443
No 152
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=21.48 E-value=3.7e+02 Score=25.47 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=35.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 47 EGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 47 eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
-|.+-++.|+..|+.+=.+|..|..-.+.+.+.|+..+..+
T Consensus 222 ~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~i 262 (414)
T PRK14552 222 MGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEV 262 (414)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777888999999999999999999999999999888763
No 153
>PLN02381 valyl-tRNA synthetase
Probab=21.02 E-value=4.1e+02 Score=28.38 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQ 85 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~ 85 (230)
...++.+|.++.+.+|+||+.+...|++ .++-...|- .-|-.-|.++. ++.+-++.|++.|.
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN-~~F~~KAP~-------------~vve~e~~kl~----~~~~~l~~l~~~l~ 1056 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNA-SGYKEKVPA-------------NIQEEDARKLT----KLLQELEFFEKESK 1056 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC-CchhhcCCH-------------HHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5678999999999999999999999965 455445552 22445555555 44445555555555
Q ss_pred HH
Q 026990 86 LL 87 (230)
Q Consensus 86 ~~ 87 (230)
.+
T Consensus 1057 ~l 1058 (1066)
T PLN02381 1057 RL 1058 (1066)
T ss_pred HH
Confidence 44
No 154
>PLN02320 seryl-tRNA synthetase
Probab=20.89 E-value=2.1e+02 Score=27.85 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 56 IHLVRSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 56 v~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
+.+++..+.+|..|..+++.+.+++++.|..+
T Consensus 136 ~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 136 VEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678889999999999999888888776553
No 155
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=20.53 E-value=14 Score=26.20 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHHH
Q 026990 35 NGPGLSGNLVDSEGFPRTDIDIHLV 59 (230)
Q Consensus 35 ~~v~m~~~Lvd~eGFPR~DiDv~~v 59 (230)
..+-+-||.+..+..|-+|||++-+
T Consensus 15 ~~v~lfGS~a~g~~~~~SDIDl~i~ 39 (93)
T PF01909_consen 15 AEVYLFGSYARGDATPDSDIDLLII 39 (93)
T ss_dssp EEEEEEHHHHHTSSCTTSCEEEEEE
T ss_pred CEEEEECCcccCcCCCCCCEEEEEE
Confidence 3578889999999999999998743
No 156
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.51 E-value=1.3e+02 Score=26.80 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAII 28 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~ 28 (230)
.+..++.+|..+|+.||+||..-|
T Consensus 15 ~Lq~eIe~LerR~~ri~~EmrtsF 38 (283)
T PF11285_consen 15 ALQIEIEQLERRRERIEKEMRTSF 38 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 355689999999999999998755
No 157
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=20.48 E-value=60 Score=25.11 Aligned_cols=16 Identities=31% Similarity=0.626 Sum_probs=14.6
Q ss_pred cCCCCCCEEEEECCee
Q 026990 161 DGLQLGDQVLKFGTVE 176 (230)
Q Consensus 161 AGL~~GD~Iv~Ing~~ 176 (230)
+.|++||.|+.++|.-
T Consensus 35 ~sLk~GD~VvT~GGi~ 50 (113)
T PRK06531 35 NAIQKGDEVVTIGGLY 50 (113)
T ss_pred HhcCCCCEEEECCCcE
Confidence 4799999999999987
Done!