Query 026990
Match_columns 230
No_of_seqs 389 out of 1960
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i18_A LMO2051 protein; alpha- 99.5 7.1E-14 2.4E-18 104.2 11.8 82 144-228 6-90 (100)
2 2zpm_A Regulator of sigma E pr 99.5 1.5E-13 5E-18 100.1 9.2 80 147-228 6-89 (91)
3 2kjp_A Uncharacterized protein 99.5 1.4E-14 4.8E-19 106.7 3.0 79 146-227 2-84 (91)
4 2kl1_A YLBL protein; structure 99.4 3.4E-13 1.2E-17 99.5 8.1 80 145-227 5-88 (94)
5 3id1_A Regulator of sigma E pr 99.4 8.5E-13 2.9E-17 97.6 10.0 71 146-218 3-76 (95)
6 3rle_A Golgi reassembly-stacki 99.4 6.8E-13 2.3E-17 111.3 8.6 82 145-229 112-197 (209)
7 2l97_A HTRA, putative serine p 99.3 6.6E-12 2.3E-16 98.4 11.1 68 145-215 57-125 (134)
8 2i6v_A General secretion pathw 99.3 6E-12 2E-16 91.3 9.1 66 146-213 20-86 (87)
9 2p3w_A Probable serine proteas 99.3 3.1E-12 1.1E-16 96.8 7.6 70 145-218 35-104 (112)
10 2hga_A Conserved protein MTH13 99.3 1.2E-11 4.1E-16 96.1 10.2 80 145-229 25-106 (125)
11 2pzd_A Serine protease HTRA2; 99.3 1.7E-11 5.8E-16 92.7 10.3 68 145-216 35-102 (113)
12 1qau_A Neuronal nitric oxide s 99.3 2.7E-11 9.2E-16 91.4 10.6 69 145-215 26-97 (112)
13 3cyy_A Tight junction protein 99.3 1.8E-11 6E-16 88.9 8.7 67 145-214 23-92 (92)
14 2i4s_A General secretion pathw 99.2 2.9E-11 9.8E-16 90.7 9.0 66 146-213 38-104 (105)
15 3rle_A Golgi reassembly-stacki 99.2 2.4E-11 8.1E-16 101.9 8.8 83 145-229 16-103 (209)
16 2eaq_A LIM domain only protein 99.2 1.8E-11 6.2E-16 88.7 7.0 60 145-206 28-90 (90)
17 2awx_A Synapse associated prot 99.2 3.6E-11 1.2E-15 89.8 8.7 70 145-217 33-105 (105)
18 2pkt_A PDZ and LIM domain prot 99.2 1.1E-11 3.8E-16 90.1 5.7 60 146-208 28-89 (91)
19 2pa1_A PDZ and LIM domain prot 99.2 5.9E-11 2E-15 85.5 8.8 58 146-206 27-86 (87)
20 2vz5_A TAX1-binding protein 3; 99.2 4.5E-11 1.5E-15 94.3 8.5 68 145-214 64-133 (139)
21 2vsp_A PDZ domain-containing p 99.2 2.9E-11 9.8E-16 88.0 6.7 60 145-207 27-88 (91)
22 2v90_A PDZ domain-containing p 99.2 1.9E-11 6.5E-16 89.7 5.3 59 146-207 31-91 (96)
23 3stj_A Protease DEGQ; serine p 99.2 1.4E-10 4.6E-15 104.5 10.4 71 145-217 263-334 (345)
24 2uzc_A Human pdlim5, PDZ and L 99.1 1.2E-10 4.2E-15 83.9 8.0 58 146-206 28-87 (88)
25 2jil_A GRIP1 protein, glutamat 99.1 7.4E-11 2.5E-15 86.6 6.9 60 145-207 32-94 (97)
26 1wh1_A KIAA1095 protein; PDZ d 99.1 3.4E-11 1.2E-15 92.8 5.3 68 145-214 48-116 (124)
27 1te0_A Protease DEGS; two doma 99.1 1.7E-10 5.8E-15 102.3 9.8 69 145-215 244-313 (318)
28 2he4_A Na(+)/H(+) exchange reg 99.1 1.8E-10 6.3E-15 83.4 8.0 59 145-206 28-88 (90)
29 1um1_A KIAA1849 protein, RSGI 99.1 2.9E-11 1E-15 90.9 3.8 70 145-217 36-108 (110)
30 1ihj_A INAD; intermolecular di 99.1 2E-10 6.8E-15 84.4 8.1 58 146-206 38-98 (98)
31 1wf7_A Enigma homologue protei 99.1 3.2E-11 1.1E-15 89.8 3.7 66 147-215 31-98 (103)
32 2jxo_A Ezrin-radixin-moesin-bi 99.1 8E-11 2.7E-15 86.7 5.5 60 145-206 33-94 (98)
33 1y8t_A Hypothetical protein RV 99.1 3.2E-10 1.1E-14 100.6 10.2 71 145-217 242-314 (324)
34 3khf_A Microtubule-associated 99.1 2.6E-10 8.9E-15 84.0 7.7 58 146-206 35-94 (99)
35 2q3g_A PDZ and LIM domain prot 99.1 3.2E-10 1.1E-14 81.9 7.9 58 146-206 28-87 (89)
36 2rcz_A Tight junction protein 99.1 4.2E-10 1.4E-14 79.3 8.3 58 145-205 21-81 (81)
37 1vb7_A PDZ and LIM domain 2; P 99.1 6.7E-11 2.3E-15 86.6 4.2 59 146-207 31-91 (94)
38 2yub_A LIMK-2, LIM domain kina 99.1 4.8E-11 1.7E-15 91.7 3.1 64 145-211 44-111 (118)
39 1w9e_A Syntenin 1; cell adhesi 99.1 5E-10 1.7E-14 90.1 9.2 78 145-227 27-106 (166)
40 3sfj_A TAX1-binding protein 3; 99.1 6.3E-10 2.2E-14 82.5 9.1 60 145-204 45-104 (104)
41 1v5l_A PDZ and LIM domain 3; a 99.1 1.2E-10 3.9E-15 86.8 4.8 60 146-208 30-91 (103)
42 1b8q_A Protein (neuronal nitri 99.1 1E-10 3.5E-15 90.2 4.7 69 145-215 33-104 (127)
43 1kwa_A Hcask/LIN-2 protein; PD 99.1 4.4E-10 1.5E-14 81.5 7.8 58 146-206 26-86 (88)
44 2kjd_A Sodium/hydrogen exchang 99.1 1.2E-11 4.2E-16 95.4 -0.7 69 145-215 33-105 (128)
45 2w4f_A Protein LAP4; structura 99.1 3.3E-10 1.1E-14 83.0 7.0 61 145-207 34-95 (97)
46 2i04_A Membrane-associated gua 99.1 7.7E-10 2.6E-14 79.1 8.7 57 145-203 25-85 (85)
47 3pv2_A DEGQ; trypsin fold, PDZ 99.0 6.5E-10 2.2E-14 103.4 10.4 69 145-215 282-351 (451)
48 3qik_A Phosphatidylinositol 3, 99.0 4.6E-10 1.6E-14 84.2 7.6 58 145-202 39-98 (101)
49 1x5q_A LAP4 protein; PDZ domai 99.0 4.6E-10 1.6E-14 84.3 7.6 60 145-207 46-107 (110)
50 1uf1_A KIAA1526 protein; PDZ d 99.0 1.1E-10 3.6E-15 90.3 4.1 69 146-218 47-119 (128)
51 1lcy_A HTRA2 serine protease; 99.0 7.2E-10 2.5E-14 98.6 10.1 67 145-215 256-322 (325)
52 4a8c_A Periplasmic PH-dependen 99.0 1.4E-09 4.7E-14 100.7 12.2 71 145-217 263-334 (436)
53 3tsv_A Tight junction protein 99.0 4.8E-10 1.7E-14 86.6 7.7 60 145-206 51-113 (124)
54 1rgw_A ZAsp protein; PDZ, cyph 99.0 4.6E-10 1.6E-14 80.2 7.0 57 146-205 26-84 (85)
55 2eeh_A PDZ domain-containing p 99.0 7.4E-10 2.5E-14 81.9 8.3 58 145-206 36-95 (100)
56 3qo6_A Protease DO-like 1, chl 99.0 3.9E-10 1.3E-14 101.3 8.0 72 144-217 250-333 (348)
57 2vsv_A Rhophilin-2; scaffold p 99.0 8.9E-10 3E-14 83.6 8.7 58 146-205 45-104 (109)
58 2jre_A C60-1 PDZ domain peptid 99.0 3.7E-10 1.3E-14 84.5 6.5 60 145-207 44-106 (108)
59 1n7e_A AMPA receptor interacti 99.0 1E-09 3.5E-14 80.6 8.7 60 145-207 30-92 (97)
60 2kom_A Partitioning defective 99.0 1.1E-09 3.6E-14 84.2 9.0 60 145-206 58-121 (121)
61 3qe1_A Sorting nexin-27, G pro 99.0 1E-09 3.5E-14 81.9 8.7 60 144-206 42-103 (107)
62 1g9o_A NHE-RF; PDZ domain, com 99.0 8E-10 2.7E-14 80.0 7.8 60 145-206 27-88 (91)
63 2f5y_A Regulator of G-protein 99.0 1.2E-09 4.3E-14 79.3 8.9 59 146-207 25-85 (91)
64 2fcf_A Multiple PDZ domain pro 99.0 9.1E-10 3.1E-14 81.5 8.3 59 145-206 39-100 (103)
65 2opg_A Multiple PDZ domain pro 99.0 9.5E-10 3.3E-14 80.7 8.3 61 145-208 30-93 (98)
66 1d5g_A Human phosphatase HPTP1 99.0 1.3E-09 4.5E-14 79.6 8.9 59 145-206 33-94 (96)
67 2eeg_A PDZ and LIM domain prot 99.0 7.1E-10 2.4E-14 81.1 7.3 58 146-206 33-92 (94)
68 2ego_A General receptor for ph 99.0 1.4E-09 4.9E-14 79.7 9.0 57 145-204 37-95 (96)
69 1v5q_A GRIP1 homolog, glutamat 99.0 6.4E-10 2.2E-14 85.4 7.4 60 146-207 46-109 (122)
70 2koj_A Partitioning defective 99.0 1.4E-09 4.7E-14 81.7 9.0 61 145-207 39-103 (111)
71 2o2t_A Multiple PDZ domain pro 99.0 1.5E-10 5.3E-15 87.9 3.8 61 145-208 49-113 (117)
72 2fne_A Multiple PDZ domain pro 99.0 1.4E-09 4.9E-14 83.1 9.2 59 146-207 54-115 (117)
73 4a8c_A Periplasmic PH-dependen 99.0 1.7E-09 5.7E-14 100.1 11.3 70 146-218 364-433 (436)
74 3cbz_A Dishevelled-2; PDZ doma 99.0 9.6E-10 3.3E-14 82.7 7.9 60 145-206 33-97 (108)
75 2dlu_A INAD-like protein; PDZ 99.0 3.3E-10 1.1E-14 85.3 5.1 70 145-218 38-110 (111)
76 1wi2_A Riken cDNA 2700099C19; 99.0 1.3E-09 4.4E-14 81.2 8.3 56 146-205 42-99 (104)
77 2vwr_A Ligand of NUMB protein 99.0 1.6E-09 5.6E-14 79.1 8.7 59 145-206 29-90 (95)
78 1p1d_A PDZ45, glutamate recept 99.0 1.5E-09 5.2E-14 89.4 9.3 60 145-206 36-99 (196)
79 2i1n_A Discs, large homolog 3; 99.0 1.7E-09 5.7E-14 80.1 8.5 61 145-208 34-97 (102)
80 3ngh_A PDZ domain-containing p 99.0 3.8E-10 1.3E-14 84.1 4.9 60 145-207 26-87 (106)
81 2djt_A Unnamed protein product 99.0 1.2E-09 4.2E-14 81.1 7.5 59 145-206 38-99 (104)
82 2g5m_B Neurabin-2; spinophilin 99.0 2.6E-10 9E-15 86.1 3.9 68 145-215 35-105 (113)
83 2yt7_A Amyloid beta A4 precurs 99.0 1.5E-09 5.1E-14 80.5 7.9 59 144-204 36-98 (101)
84 1ueq_A Membrane associated gua 99.0 2.4E-09 8.3E-14 82.2 9.3 59 146-206 45-107 (123)
85 3bpu_A Membrane-associated gua 99.0 1.1E-09 3.7E-14 78.9 6.9 57 146-206 28-87 (88)
86 2fe5_A Presynaptic protein SAP 99.0 2.4E-09 8.2E-14 77.8 8.7 58 145-205 33-93 (94)
87 3r68_A Na(+)/H(+) exchange reg 99.0 1.3E-09 4.6E-14 79.4 7.2 58 146-206 30-89 (95)
88 1wi4_A Synip, syntaxin binding 99.0 1.5E-09 5.2E-14 81.9 7.7 60 145-206 41-106 (109)
89 1q3o_A Shank1; PDZ, GKAP, pept 99.0 2.3E-09 7.7E-14 80.4 8.5 56 146-204 46-103 (109)
90 2edz_A PDZ domain-containing p 99.0 6E-10 2E-14 84.4 5.3 67 145-214 38-106 (114)
91 1y7n_A Amyloid beta A4 precurs 99.0 2.1E-09 7.1E-14 78.6 7.9 54 148-204 34-89 (90)
92 1uep_A Membrane associated gua 99.0 9.9E-10 3.4E-14 81.7 6.3 59 146-206 35-97 (103)
93 2dls_A PDZ-rhogef, RHO guanine 99.0 1.4E-09 4.9E-14 79.4 7.0 58 145-206 29-88 (93)
94 2byg_A Channel associated prot 99.0 2.2E-09 7.4E-14 82.0 8.3 58 146-206 55-115 (117)
95 1wfg_A Regulating synaptic mem 99.0 2.5E-09 8.6E-14 83.3 8.8 59 145-205 65-127 (131)
96 4amh_A Disks large homolog 1; 99.0 5E-09 1.7E-13 78.5 10.1 67 146-213 33-103 (106)
97 2r4h_A Membrane-associated gua 99.0 3.1E-09 1.1E-13 80.3 9.0 60 145-207 49-111 (112)
98 2ejy_A 55 kDa erythrocyte memb 98.9 1.4E-09 4.9E-14 80.7 6.9 57 145-204 36-95 (97)
99 1uew_A Membrane associated gua 98.9 1.5E-09 5E-14 82.2 7.1 58 147-207 45-105 (114)
100 3r0h_A INAD, inactivation-NO-a 98.9 4E-09 1.4E-13 87.0 10.3 81 145-228 45-132 (206)
101 3gsl_A Disks large homolog 4; 98.9 3.8E-09 1.3E-13 86.0 9.9 78 145-227 35-117 (196)
102 2dmz_A INAD-like protein; PDZ 98.9 1.8E-09 6.1E-14 83.4 7.5 61 145-208 46-109 (129)
103 2q9v_A Membrane-associated gua 98.9 1.4E-09 4.8E-14 78.6 6.5 57 147-205 29-89 (90)
104 1wha_A KIAA0147 protein, scrib 98.9 2E-09 6.9E-14 80.2 7.5 58 145-205 38-98 (105)
105 2d90_A PDZ domain containing p 98.9 1.3E-09 4.6E-14 80.7 6.5 59 145-206 30-90 (102)
106 2iwq_A Multiple PDZ domain pro 98.9 3.1E-09 1.1E-13 82.0 8.6 58 145-205 59-119 (123)
107 2kv8_A RGS12, regulator of G-p 98.9 9.1E-10 3.1E-14 78.5 5.2 56 146-204 24-81 (83)
108 1x5n_A Harmonin; PDZ domain, u 98.9 1.7E-10 5.7E-15 87.3 1.4 70 145-218 41-113 (114)
109 1whd_A RGS3, regulator of G-pr 98.9 1.4E-09 4.7E-14 80.6 6.3 57 146-205 37-95 (100)
110 1wif_A RSGI RUH-020, riken cDN 98.9 1.2E-09 4E-14 85.1 6.1 58 145-204 49-110 (126)
111 1uit_A Human discs large 5 pro 98.9 6.1E-10 2.1E-14 84.7 4.4 66 145-212 42-108 (117)
112 1uez_A KIAA1526 protein; PDZ d 98.9 7.4E-10 2.5E-14 81.9 4.7 58 146-206 36-94 (101)
113 3num_A Serine protease HTRA1; 98.9 1E-10 3.6E-15 104.2 0.0 69 145-217 254-322 (332)
114 1m5z_A GRIP, AMPA receptor int 98.9 3.9E-09 1.3E-13 76.4 8.4 57 145-204 32-90 (91)
115 2jik_A Synaptojanin-2 binding 98.9 2.6E-09 8.7E-14 78.9 7.5 59 145-206 37-98 (101)
116 2iwn_A Multiple PDZ domain pro 98.9 4E-09 1.4E-13 76.8 8.5 59 145-206 33-94 (97)
117 1ujd_A KIAA0559 protein; PDZ d 98.9 1.5E-09 5.1E-14 82.7 6.4 59 146-207 50-111 (117)
118 3o46_A Maguk P55 subfamily mem 98.9 3.6E-09 1.2E-13 77.1 8.1 59 145-206 28-89 (93)
119 2e7k_A Maguk P55 subfamily mem 98.9 2.8E-09 9.6E-14 77.7 7.5 57 145-204 29-87 (91)
120 1x6d_A Interleukin-16; PDZ dom 98.9 2.2E-09 7.6E-14 81.7 7.1 64 145-210 42-108 (119)
121 2kpk_A Membrane-associated gua 98.9 3.8E-09 1.3E-13 81.8 8.6 59 146-206 44-106 (129)
122 1vae_A Rhophilin 2, rhophilin, 98.9 1.3E-09 4.4E-14 82.8 5.6 56 146-203 37-94 (111)
123 1v62_A KIAA1719 protein; struc 98.9 2.7E-09 9.1E-14 81.4 7.2 58 146-206 43-103 (117)
124 3axa_A Afadin, nectin-3, prote 98.9 5E-09 1.7E-13 78.1 8.5 60 145-207 38-100 (106)
125 1nf3_C PAR-6B; semi-CRIB motif 98.9 2.9E-09 9.8E-14 82.4 7.5 59 145-206 65-126 (128)
126 2qg1_A Multiple PDZ domain pro 98.9 6.6E-09 2.3E-13 75.3 8.9 59 145-206 29-90 (92)
127 1va8_A Maguk P55 subfamily mem 98.9 4.4E-09 1.5E-13 79.6 8.2 59 145-206 48-109 (113)
128 2edp_A Fragment, shroom family 98.9 2.3E-09 7.9E-14 79.4 6.4 58 146-206 36-95 (100)
129 2iwo_A Multiple PDZ domain pro 98.9 1.5E-09 5.2E-14 83.3 5.4 60 146-208 54-116 (120)
130 2h2b_A Tight junction protein 98.9 2.8E-09 9.6E-14 79.5 6.6 60 145-207 39-99 (107)
131 1q7x_A PDZ2B domain of PTP-BAS 98.9 2.7E-09 9.3E-14 79.8 6.4 60 145-207 42-104 (108)
132 2d92_A INAD-like protein; PDZ 98.9 4.6E-09 1.6E-13 78.8 7.7 60 145-204 44-104 (108)
133 2yuy_A RHO GTPase activating p 98.9 8.2E-10 2.8E-14 85.2 3.5 58 146-206 62-121 (126)
134 4fgm_A Aminopeptidase N family 98.9 6.7E-09 2.3E-13 99.7 10.5 67 146-215 497-564 (597)
135 3k1r_A Harmonin; protein-prote 98.9 6.2E-09 2.1E-13 85.9 8.8 58 145-206 110-169 (192)
136 2gzv_A PRKCA-binding protein; 98.9 6E-09 2.1E-13 79.2 8.1 56 145-203 50-108 (114)
137 1wfv_A Membrane associated gua 98.9 1.8E-09 6.3E-14 79.8 5.0 58 146-206 37-97 (103)
138 2db5_A INAD-like protein; PDZ 98.9 5.4E-09 1.9E-13 80.6 7.8 58 146-206 55-116 (128)
139 2dm8_A INAD-like protein; PDZ 98.9 4.3E-09 1.5E-13 79.6 7.0 61 145-208 43-106 (116)
140 3i4w_A Disks large homolog 4; 98.9 9.3E-09 3.2E-13 76.1 8.5 58 145-205 35-95 (104)
141 3gsl_A Disks large homolog 4; 98.9 5.1E-09 1.7E-13 85.2 7.7 62 145-209 130-194 (196)
142 1qav_A Alpha-1 syntrophin (res 98.9 1.1E-08 3.9E-13 73.8 8.7 55 146-203 31-88 (90)
143 1ufx_A KIAA1526 protein; PDZ d 98.8 3.5E-09 1.2E-13 79.1 5.9 59 145-205 32-97 (103)
144 2qt5_A Glutamate receptor-inte 98.8 1.9E-08 6.7E-13 82.8 11.0 57 146-205 34-93 (200)
145 3hpk_A Protein interacting wit 98.8 9.8E-09 3.4E-13 78.8 8.4 56 145-203 45-103 (125)
146 1fc6_A Photosystem II D1 prote 98.8 1.3E-08 4.3E-13 92.7 10.3 69 145-215 99-172 (388)
147 1uhp_A Hypothetical protein KI 98.8 1.8E-08 6E-13 75.3 9.4 60 145-205 41-101 (107)
148 3e17_A Tight junction protein 98.8 1.1E-08 3.7E-13 74.1 7.8 56 146-204 22-80 (88)
149 2dkr_A LIN-7 homolog B; LIN-7B 98.8 1.1E-08 3.6E-13 74.2 7.8 58 145-205 30-90 (93)
150 1wf8_A Neurabin-I; PDZ domain, 98.8 1.1E-08 3.9E-13 76.3 8.1 58 145-205 40-100 (107)
151 2qkv_A Inactivation-NO-after-p 98.8 7.1E-09 2.4E-13 76.1 6.9 57 145-204 31-90 (96)
152 3b76_A E3 ubiquitin-protein li 98.8 1.1E-08 3.7E-13 78.4 8.1 56 146-204 54-112 (118)
153 2eno_A Synaptojanin-2-binding 98.8 1.2E-08 4E-13 77.8 8.2 60 145-207 47-109 (120)
154 2z17_A Pleckstrin homology SEC 98.8 6.2E-09 2.1E-13 77.4 6.4 54 145-201 48-103 (104)
155 3l4f_D SH3 and multiple ankyri 98.8 1.3E-08 4.4E-13 79.3 8.4 58 146-206 66-125 (132)
156 3pv2_A DEGQ; trypsin fold, PDZ 98.8 1.2E-08 4E-13 94.9 9.5 65 146-213 387-451 (451)
157 2qt5_A Glutamate receptor-inte 98.8 1E-08 3.5E-13 84.4 7.9 60 146-208 136-198 (200)
158 1mfg_A ERB-B2 interacting prot 98.8 1.6E-08 5.6E-13 73.7 8.0 57 145-205 35-93 (95)
159 3kzd_A TIAM-1, T-lymphoma inva 98.8 1.9E-08 6.5E-13 74.4 8.4 53 145-202 35-89 (94)
160 1wg6_A Hypothetical protein (r 98.8 6.4E-09 2.2E-13 80.5 6.0 59 146-206 56-123 (127)
161 3nfk_A Tyrosine-protein phosph 98.8 1.8E-08 6.2E-13 75.0 8.1 57 146-204 44-107 (107)
162 2daz_A INAD-like protein; PDZ 98.8 1.7E-08 5.8E-13 77.5 8.1 67 145-214 51-121 (124)
163 1r6j_A Syntenin 1; PDZ, membra 98.8 1.7E-08 6E-13 72.8 7.7 55 148-203 26-80 (82)
164 2la8_A Inactivation-NO-after-p 98.8 1.2E-08 4.1E-13 76.6 7.0 57 145-204 25-84 (106)
165 1i16_A Interleukin 16, LCF; cy 98.8 6.8E-09 2.3E-13 80.6 5.7 59 146-206 58-119 (130)
166 2d8i_A T-cell lymphoma invasio 98.8 8.3E-09 2.8E-13 78.8 6.0 56 145-205 44-101 (114)
167 2eei_A PDZ domain-containing p 98.8 8.7E-09 3E-13 76.7 6.0 59 145-206 32-92 (106)
168 4e34_A Golgi-associated PDZ an 98.8 2.5E-08 8.5E-13 71.4 8.1 57 146-203 29-86 (87)
169 2edv_A FERM and PDZ domain-con 98.8 7.9E-09 2.7E-13 75.9 5.5 56 146-205 32-89 (96)
170 1ky9_A Protease DO, DEGP, HTRA 98.7 1.7E-09 5.9E-14 100.4 1.6 69 145-215 286-355 (448)
171 2cs5_A Tyrosine-protein phosph 98.7 5.6E-09 1.9E-13 79.5 4.2 61 146-208 42-109 (119)
172 1v6b_A Harmonin isoform A1; st 98.7 2E-08 6.8E-13 76.6 7.2 57 146-204 44-106 (118)
173 1tp5_A Presynaptic density pro 98.7 2.1E-08 7.3E-13 76.1 7.2 58 145-205 38-98 (119)
174 1uju_A Scribble; PDZ domain, c 98.7 5.5E-09 1.9E-13 78.6 3.7 58 145-205 44-104 (111)
175 1p1d_A PDZ45, glutamate recept 98.7 2.2E-08 7.6E-13 82.4 7.6 58 145-205 135-195 (196)
176 2qbw_A PDZ-fibronectin fusion 98.7 7.6E-08 2.6E-12 78.7 10.8 66 145-214 24-94 (195)
177 3egg_C Spinophilin; PP1, serin 98.7 3.6E-08 1.2E-12 80.3 8.7 59 145-204 111-170 (170)
178 1ujv_A Membrane associated gua 98.7 3.1E-08 1.1E-12 72.8 7.5 57 146-206 33-92 (96)
179 2ehr_A INAD-like protein; PDZ 98.7 2.4E-08 8.2E-13 75.7 6.8 59 145-206 50-111 (117)
180 2dc2_A GOPC, golgi associated 98.7 5.2E-08 1.8E-12 72.4 8.4 60 146-206 36-96 (103)
181 1n7t_A 99-MER peptide of densi 98.7 2.1E-08 7.3E-13 74.2 6.2 57 145-205 43-101 (103)
182 2krg_A Na(+)/H(+) exchange reg 98.7 1.1E-09 3.9E-14 92.6 -1.9 68 145-215 33-105 (216)
183 3suz_A Amyloid beta A4 precurs 98.7 1E-08 3.6E-13 93.5 3.8 80 144-227 231-314 (388)
184 2csj_A TJP2 protein; PDZ domai 98.6 4.8E-08 1.6E-12 74.1 6.4 59 145-207 46-106 (117)
185 1um7_A Synapse-associated prot 98.6 3.9E-08 1.3E-12 73.7 5.8 59 145-206 39-100 (113)
186 3tsz_A Tight junction protein 98.6 6.1E-08 2.1E-12 88.6 8.2 59 145-205 31-92 (391)
187 4fln_A Protease DO-like 2, chl 98.6 1.5E-07 5.2E-12 89.3 9.7 68 145-215 277-355 (539)
188 3k50_A Putative S41 protease; 98.6 2.5E-08 8.6E-13 91.6 4.1 57 146-206 91-147 (403)
189 3r0h_A INAD, inactivation-NO-a 98.5 1.6E-07 5.6E-12 77.3 7.1 57 145-204 136-195 (206)
190 3shw_A Tight junction protein 98.5 2.8E-07 9.7E-12 86.1 8.2 59 145-205 23-84 (468)
191 1ky9_A Protease DO, DEGP, HTRA 98.4 2.4E-08 8.2E-13 92.7 0.0 64 146-212 384-447 (448)
192 3soe_A Membrane-associated gua 98.4 1.1E-06 3.8E-11 67.0 9.0 58 147-208 36-96 (113)
193 2lob_A Golgi-associated PDZ an 97.8 2.8E-08 9.6E-13 75.3 0.0 54 146-202 54-110 (112)
194 1z87_A Alpha-1-syntrophin; pro 98.4 4.1E-07 1.4E-11 79.0 6.8 58 146-206 104-164 (263)
195 1w9e_A Syntenin 1; cell adhesi 98.3 1E-07 3.6E-12 76.4 -0.1 55 148-214 110-164 (166)
196 2xkx_A Disks large homolog 4; 98.2 2.4E-06 8.2E-11 83.5 8.8 59 145-206 89-150 (721)
197 1k32_A Tricorn protease; prote 98.2 1.9E-06 6.6E-11 86.2 7.9 67 145-214 748-825 (1045)
198 3gge_A PDZ domain-containing p 98.1 2.5E-05 8.6E-10 57.7 9.3 58 146-203 29-88 (95)
199 2xkx_A Disks large homolog 4; 98.0 1.3E-05 4.4E-10 78.4 8.5 58 145-205 331-391 (721)
200 3suz_A Amyloid beta A4 precurs 97.5 1.2E-05 4.1E-10 73.2 0.0 55 147-204 317-373 (388)
201 4fln_A Protease DO-like 2, chl 97.5 0.00018 6.1E-09 68.3 7.6 62 146-210 416-477 (539)
202 2oxj_A Hybrid alpha/beta pepti 92.0 0.34 1.2E-05 28.4 4.6 30 4-33 4-33 (34)
203 3m48_A General control protein 91.4 0.4 1.4E-05 28.0 4.5 30 4-33 3-32 (33)
204 3c3g_A Alpha/beta peptide with 91.0 0.5 1.7E-05 27.5 4.5 28 5-32 4-31 (33)
205 1uo4_A General control protein 89.2 0.84 2.9E-05 26.7 4.6 30 4-33 4-33 (34)
206 3c3f_A Alpha/beta peptide with 88.9 0.9 3.1E-05 26.5 4.5 28 5-32 5-32 (34)
207 2bni_A General control protein 88.8 0.84 2.9E-05 26.7 4.3 29 4-32 4-32 (34)
208 2wq1_A General control protein 86.1 1.7 5.7E-05 25.3 4.5 28 5-32 4-31 (33)
209 1kd8_B GABH BLL, GCN4 acid bas 84.1 2.2 7.6E-05 25.2 4.5 30 4-33 4-33 (36)
210 2r2v_A GCN4 leucine zipper; co 83.8 2.4 8.2E-05 24.8 4.5 29 4-32 4-32 (34)
211 2hy6_A General control protein 83.6 2.5 8.4E-05 24.7 4.5 29 4-32 4-32 (34)
212 1kd8_A GABH AIV, GCN4 acid bas 83.4 2.1 7.2E-05 25.3 4.2 30 4-33 4-33 (36)
213 3viq_B Mating-type switching p 75.8 18 0.00063 25.5 8.5 29 4-32 4-32 (85)
214 3a2a_A Voltage-gated hydrogen 62.8 11 0.00036 24.5 3.9 34 3-37 20-53 (58)
215 3vmx_A Voltage-gated hydrogen 57.8 16 0.00054 23.1 4.0 32 4-36 14-45 (48)
216 3o0z_A RHO-associated protein 57.4 63 0.0022 25.6 8.5 30 4-33 51-80 (168)
217 1lyp_A CAP18; lipopolysacchari 53.3 24 0.0008 19.7 3.8 27 62-88 2-28 (32)
218 1tjl_A DNAK suppressor protein 53.0 62 0.0021 25.0 7.8 72 6-89 37-108 (151)
219 3r8s_Y 50S ribosomal protein L 50.4 30 0.001 22.8 4.8 51 4-71 4-55 (63)
220 3v2d_2 50S ribosomal protein L 44.3 49 0.0017 22.4 5.2 16 57-72 48-63 (72)
221 3dor_A Protein CT_858, CPAF; m 43.3 72 0.0025 30.2 7.9 15 162-176 109-123 (583)
222 3j21_W 50S ribosomal protein L 42.1 77 0.0026 21.4 8.3 56 3-74 3-59 (72)
223 3f1i_H Hepatocyte growth facto 39.3 1.1E+02 0.0036 22.1 7.3 25 56-80 71-95 (98)
224 1l8d_A DNA double-strand break 39.1 83 0.0028 22.4 6.2 75 5-81 14-88 (112)
225 1vq8_V 50S ribosomal protein L 37.6 91 0.0031 20.9 6.2 51 5-71 8-59 (71)
226 3bas_A Myosin heavy chain, str 32.3 66 0.0022 22.5 4.5 27 6-32 61-87 (89)
227 1gk6_A Vimentin; intermediate 31.8 79 0.0027 20.3 4.5 26 8-33 28-53 (59)
228 2yy0_A C-MYC-binding protein; 31.6 93 0.0032 19.7 4.7 29 5-33 23-51 (53)
229 1zme_C Proline utilization tra 30.7 71 0.0024 20.4 4.3 25 8-32 44-68 (70)
230 2xv5_A Lamin-A/C; structural p 30.3 83 0.0028 21.4 4.6 27 7-33 32-58 (74)
231 3u5e_h 60S ribosomal protein L 29.8 91 0.0031 23.3 5.1 44 9-71 13-56 (120)
232 2eqb_B RAB guanine nucleotide 29.7 78 0.0027 22.8 4.5 17 15-31 47-63 (97)
233 2eqb_B RAB guanine nucleotide 29.1 80 0.0027 22.7 4.5 57 5-89 9-65 (97)
234 1bb1_B Designed, thermostable 26.8 80 0.0027 17.9 3.2 23 9-31 3-25 (36)
235 2dgc_A Protein (GCN4); basic d 25.9 86 0.0029 20.5 3.9 28 5-32 34-61 (63)
236 1r73_A TM1492, 50S ribosomal p 25.9 1.4E+02 0.0049 19.5 5.9 52 3-71 3-55 (66)
237 1wot_A Putative minimal nucleo 23.6 27 0.00093 24.5 1.1 24 35-58 26-49 (98)
238 2zvf_A Alanyl-tRNA synthetase; 23.0 93 0.0032 23.7 4.3 30 4-33 28-57 (171)
239 1x8y_A Lamin A/C; structural p 22.9 1.2E+02 0.0042 20.9 4.5 25 8-32 56-80 (86)
240 3bbo_Z Ribosomal protein L29; 22.7 1.4E+02 0.0049 23.6 5.3 16 56-71 104-119 (173)
241 3azd_A Short alpha-tropomyosin 22.7 40 0.0014 19.8 1.6 28 4-31 7-34 (37)
242 2o3l_A Hypothetical protein; s 22.0 72 0.0025 22.3 3.1 28 59-86 3-30 (85)
243 1x4t_A Hypothetical protein LO 21.8 1E+02 0.0036 21.9 3.9 24 5-28 56-79 (92)
244 2kq9_A DNAK suppressor protein 21.8 43 0.0015 24.5 1.9 21 69-89 58-78 (112)
245 3at7_A Alginate-binding flagel 21.4 1.3E+02 0.0044 25.5 5.2 68 9-85 203-277 (283)
246 3icx_A PRE mRNA splicing prote 20.8 1.3E+02 0.0043 25.4 4.9 43 45-87 86-128 (255)
247 4h62_K Mediator of RNA polymer 20.7 63 0.0022 18.8 2.1 22 12-33 11-32 (40)
248 2ozb_B U4/U6 small nuclear rib 20.4 1.3E+02 0.0043 25.4 4.9 43 45-87 100-142 (260)
249 4a17_U RPL35, 60S ribosomal pr 20.3 1.1E+02 0.0039 22.9 4.1 66 4-89 8-75 (124)
250 2rrl_A FLIK, flagellar HOOK-le 20.3 31 0.001 27.5 0.9 36 15-51 122-157 (169)
No 1
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=99.54 E-value=7.1e-14 Score=104.20 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=72.3
Q ss_pred CCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC--CCc
Q 026990 144 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW--QGR 220 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~--~g~ 220 (230)
..+++|..|.++|||++ ||++||+|++|||.+ +.+|.++..++.. ..|+.+.++|.|+|+..++++++..| .++
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~ 82 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNA--FKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKKGT 82 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBC--CSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTTCC
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCCCC
Confidence 35789999999999995 999999999999999 9999999999986 46899999999999999999988755 367
Q ss_pred ceeeEEEE
Q 026990 221 GLLGCHFR 228 (230)
Q Consensus 221 g~LG~~~~ 228 (230)
+.||+.+.
T Consensus 83 ~~iGi~~~ 90 (100)
T 3i18_A 83 PGIGITLV 90 (100)
T ss_dssp EECSEEEG
T ss_pred cEEeEEEe
Confidence 78998764
No 2
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=99.48 E-value=1.5e-13 Score=100.09 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=68.9
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecC--CCC--cce
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP--WQG--RGL 222 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~--~~g--~g~ 222 (230)
++|..|.++|||++|||++||+|++|||.+ +.+|.++...+....++.+.++|.|+|+.+++.+++.. +.+ .|+
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~g~ 83 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQP--LTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIPESXPGNGXAIGF 83 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEE--CCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECCEEECCSSSCEEE
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeE--cCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEEeeecCCCceEEE
Confidence 568899999999999999999999999999 99999999999877788999999999999998888753 223 256
Q ss_pred eeEEEE
Q 026990 223 LGCHFR 228 (230)
Q Consensus 223 LG~~~~ 228 (230)
+||.+.
T Consensus 84 ~g~~~~ 89 (91)
T 2zpm_A 84 VGIEPX 89 (91)
T ss_dssp CCEECC
T ss_pred EEEEEe
Confidence 887654
No 3
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=99.47 E-value=1.4e-14 Score=106.69 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=69.5
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecC---CCCcc
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRP---WQGRG 221 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~~---~~g~g 221 (230)
+++|..|.++|||++ ||++||+|++|||.+ +.++.++..++... +|+++.|+|.|+|+.+++++++.. +.+++
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~gr~ 78 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKN--YQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRA 78 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBC--CSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCTTCTTSC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEE--CCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccCCCCCcc
Confidence 356888999999999 999999999999999 99999999999875 689999999999999999998863 45677
Q ss_pred eeeEEE
Q 026990 222 LLGCHF 227 (230)
Q Consensus 222 ~LG~~~ 227 (230)
.||+.+
T Consensus 79 ~~~~~~ 84 (91)
T 2kjp_A 79 GIGVSL 84 (91)
T ss_dssp SCCSCC
T ss_pred eeEEee
Confidence 888754
No 4
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=99.43 E-value=3.4e-13 Score=99.55 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=69.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecCC---CCc
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPW---QGR 220 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~~~---~g~ 220 (230)
.+++|..|.++|||++ ||++||+|++|||.+ +.++.++..++... .|+.+.|+|.|+|+.+++++++..| .++
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~ 81 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQP--INTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFPHHPNQ 81 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBC--CCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBCSSCTTC
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeCCCCCCC
Confidence 3578999999999999 999999999999999 99999999999875 6899999999999999999988643 456
Q ss_pred ceeeEEE
Q 026990 221 GLLGCHF 227 (230)
Q Consensus 221 g~LG~~~ 227 (230)
..+|+.+
T Consensus 82 ~~~~~~~ 88 (94)
T 2kl1_A 82 IGLGVTL 88 (94)
T ss_dssp BCCSCC-
T ss_pred cEEEEEe
Confidence 7777654
No 5
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=99.43 E-value=8.5e-13 Score=97.64 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=62.1
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEEECC--EEEEEEEEecCCC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIMRQG--GLINLAVTPRPWQ 218 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~-g~~v~l~V~R~g--~~~~l~l~p~~~~ 218 (230)
.++|.+|.++|||++|||++||+|++|||++ +.+|+++...+.... ++.+.++|.|+| ...++++....|.
T Consensus 3 ~p~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~ 76 (95)
T 3id1_A 3 RPVVGEIAANSIAAEAQIAPGTELKAVDGIE--TPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWA 76 (95)
T ss_dssp CCBEEEECTTSHHHHTTCCTTCEEEEETTEE--CSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCC
T ss_pred CCEEEeeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccc
Confidence 4689999999999999999999999999999 999999999887654 478999999987 4577788777773
No 6
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.39 E-value=6.8e-13 Score=111.30 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=72.6
Q ss_pred CceEEEEecCCChhhhcCCCC-CCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC--EEEEEEEEec-CCCCc
Q 026990 145 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG--GLINLAVTPR-PWQGR 220 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~-GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g--~~~~l~l~p~-~~~g~ 220 (230)
.+++|..|.++|||++|||++ ||+|++||| . +.+++++..++....++++.++|.|++ ..++++++|. .|++.
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing-~--v~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~ 188 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADT-V--MNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGE 188 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESS-C--CCSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSS
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCC-E--eCCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCc
Confidence 567899999999999999999 999999999 4 788889999998878899999999964 5688999997 69889
Q ss_pred ceeeEEEEe
Q 026990 221 GLLGCHFRM 229 (230)
Q Consensus 221 g~LG~~~~p 229 (230)
|+|||.+.+
T Consensus 189 g~lG~~~~~ 197 (209)
T 3rle_A 189 GSLGCGIGY 197 (209)
T ss_dssp SSSCEEEEC
T ss_pred eeeeEEecC
Confidence 999999863
No 7
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.35 E-value=6.6e-12 Score=98.44 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||+ |||++||+|++|||.+ +.++.++..++... .|+.+.++|.|+|+.+++++++.
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 125 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKE--IASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLN 125 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEE--CCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECC
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEc
Confidence 357899999999999 9999999999999999 99999999988865 78999999999999999999885
No 8
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.33 E-value=6e-12 Score=91.28 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=58.6
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~ 213 (230)
++.|..+.|+|||++|||++||+|++|||.+ +.+|.++..++.. ..++.+.++|.|+|+.+++.++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEE--TTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 5678888889999999999999999999999 9999999988875 4688999999999998877765
No 9
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=96.77 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=62.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ 218 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~ 218 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++.++..++. .++.+.++|.|+|+.+++.+++..+.
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~~~ 104 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRP--LVDSSELQEAVL--TESPLLLEVRRGNDDLLFSIAPEVVM 104 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHH--HCSSEEEEEEETTEEEEEEECCEEEC
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHh--CCCeEEEEEEECCEEEEEEEEEeeeC
Confidence 46889999999999999999999999999999 999999998884 46789999999999999999886443
No 10
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=99.30 E-value=1.2e-11 Score=96.13 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=67.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec-CCCCcce
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR-PWQGRGL 222 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~-~~~g~g~ 222 (230)
.+++|..|.++|||++| |++||+|++|||.+ +.+|.++..++.. ..++.+.|+| |+|+ +++++.+. .+.+.+.
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~--v~~~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~~~ 99 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMP--TSNLTTYSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSRAY 99 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEE--CSSHHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCSCB
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCceE
Confidence 56889999999999999 99999999999999 9999999999885 5788999999 9988 55555443 2455678
Q ss_pred eeEEEEe
Q 026990 223 LGCHFRM 229 (230)
Q Consensus 223 LG~~~~p 229 (230)
|||.+.+
T Consensus 100 lGi~~~~ 106 (125)
T 2hga_A 100 MGIRTSN 106 (125)
T ss_dssp CCEEEEC
T ss_pred EEEEecC
Confidence 9987653
No 11
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.29 E-value=1.7e-11 Score=92.71 Aligned_cols=68 Identities=28% Similarity=0.314 Sum_probs=62.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP 216 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~ 216 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++.++...+.. ++.+.++|.|+|+.+++.+++..
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~ 102 (113)
T 2pzd_A 35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV 102 (113)
T ss_dssp SCEEEEEEBTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence 56889999999999999999999999999999 9999999998876 57899999999999999998863
No 12
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.28 E-value=2.7e-11 Score=91.36 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=62.6
Q ss_pred CceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
..++|..|.++|||+++|| ++||+|++|||.+ +.+ ++++..++....|+.+.++|.|+|+..++.+.+.
T Consensus 26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~ 97 (112)
T 1qau_A 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT 97 (112)
T ss_dssp SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEEEEE
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEeeee
Confidence 4688999999999999998 9999999999999 777 9999999988778999999999998888887765
No 13
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.27 E-value=1.8e-11 Score=88.90 Aligned_cols=67 Identities=27% Similarity=0.321 Sum_probs=50.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.... ..+.++|.|+|+..++.++|
T Consensus 23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~~~~~v~p 92 (92)
T 3cyy_A 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSK-GKLKMVVQRDERATLLNVPD 92 (92)
T ss_dssp EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTT-TEEEEEEEC-----------
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CcEEEEEEeCCceeeeeCCC
Confidence 457899999999999999 99999999999999 88 9999998887644 48999999999888777754
No 14
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.24 E-value=2.9e-11 Score=90.72 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=57.9
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~ 213 (230)
++.|..+.|+|||++|||++||+|++|||.+ +.+|.++..++.. ..++.+.++|.|+|+.+++.++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEE--TTSTTHHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence 4557778888888999999999999999999 9999999988875 5688999999999998877765
No 15
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.23 E-value=2.4e-11 Score=101.87 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=69.3
Q ss_pred CceEEEEecCCChhhhcCCCCC-CEEEEECCeeCCCCCHHHHHHHH-hhCCCCeEEEEEEECC--EEEEEEEEec-CCCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLG-DQVLKFGTVEAGDNLLERLAAEG-RKNQGNAVPVVIMRQG--GLINLAVTPR-PWQG 219 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~G-D~Iv~Ing~~~~v~~~~dl~~~l-~~~~g~~v~l~V~R~g--~~~~l~l~p~-~~~g 219 (230)
.+++|..|.++|||++|||++| |+|++|||++ +.+|.++...+ ....++.+.++|.|++ +..++++.|. .|.+
T Consensus 16 ~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~ 93 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSR--LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGG 93 (209)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTTEEEEEETTEE--CCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSS
T ss_pred CEEEEEEECCCCHHHHCCCCcCCeEEEEECCEE--CcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccc
Confidence 4689999999999999999999 9999999999 88888876544 4567899999999964 6677777775 5777
Q ss_pred cceeeEEEEe
Q 026990 220 RGLLGCHFRM 229 (230)
Q Consensus 220 ~g~LG~~~~p 229 (230)
.+.||+.+.+
T Consensus 94 ~~~lGi~~~~ 103 (209)
T 3rle_A 94 QGLLGVSIRF 103 (209)
T ss_dssp SSSSCEEEEE
T ss_pred cCccceEEee
Confidence 7889988763
No 16
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=88.68 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=53.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCC--CCHHHHHHHHhh-CCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~-~~g~~v~l~V~R~g~ 206 (230)
.+++|..|.++|||++|||++||+|++|||.+ + .++.++..++.. ..++.+.++|.|+|+
T Consensus 28 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 90 (90)
T 2eaq_A 28 PGIFVASVEAGSPAEFSQLQVDDEIIAINNTK--FSYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90 (90)
T ss_dssp TEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CCTTCHHHHHHHHHHHHHHTEEEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 46889999999999999999999999999999 8 899999998875 367899999999763
No 17
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.22 E-value=3.6e-11 Score=89.84 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=51.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
..++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+... +..+.++|.|++....+.++|..|
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~p~~w 105 (105)
T 2awx_A 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVS--LEEVTHEEAVTALKNT-SDFVYLKVAKPTSMYISRHHHHHH 105 (105)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHSC-CSEEEEEEECCCC-----------
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCCCCCCccccccCC
Confidence 368899999999999999 99999999999999 64 477777777654 789999999999999999999877
No 18
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.22 E-value=1.1e-11 Score=90.13 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=53.3
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHH--HHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~--dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++. ++..++.. .++++.++|.|+|+..
T Consensus 28 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 28 PLAISRVTPGSKAALANLCIGDVITAIDGEN--TSNMTHLEAQNRIKG-CTDNLTLTVARSEHES 89 (91)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence 5789999999999999999999999999999 77666 88888877 8899999999988653
No 19
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.21 E-value=5.9e-11 Score=85.52 Aligned_cols=58 Identities=10% Similarity=0.171 Sum_probs=53.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +.+ +.++..++.... +.+.++|.|+++
T Consensus 27 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 27 PIMVTKVAERGKAKDADLRPGDIIVAINGES--AEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp EEEEEEECSSSHHHHTTCCTTCEEEEETTEE--STTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 5789999999999999999999999999999 777 899999998765 789999999874
No 20
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.20 E-value=4.5e-11 Score=94.32 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=55.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.+++|..|.++|||++|||++||+|++|||.+ +. ++.++..++....|+.+.|+|.|+|+..++.+..
T Consensus 64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~ 133 (139)
T 2vz5_A 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD--MTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSM 133 (139)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHCCTTCSEEEEEEEECC-------CC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEee
Confidence 46889999999999999999999999999999 76 6999999998777899999999999887776654
No 21
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.20 E-value=2.9e-11 Score=88.00 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=51.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
++++|..|.++|||++|||++||+|++|||.+ +. ++.++..++... ++.+.++|.|++..
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 27 PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVN--VLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 46789999999999999999999999999999 77 899999999876 88999999998764
No 22
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=89.72 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
+++|..|.++|||++|||++||+|++|||.+ +.+ +.++...+... ++.+.++|.|+++.
T Consensus 31 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGES--VEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp EEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 5889999999999999999999999999999 776 89999988875 88999999998754
No 23
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=99.15 E-value=1.4e-10 Score=104.46 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=65.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
.+++|.+|.++|||++|||++||+|++|||++ +.++.++...+.. .+|+++.|+|.|+|+.+++++++..+
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 334 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEE--CSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccc
Confidence 46899999999999999999999999999999 9999999999976 47999999999999999999988643
No 24
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=83.92 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=51.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++ .++...+... ++.+.++|.|++.
T Consensus 28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 28 PLTISSLKDGGKAAQANVRIGDVVLSIDGIN--AQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 4789999999999999999999999999999 7766 7888777654 7899999999874
No 25
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.14 E-value=7.4e-11 Score=86.59 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=54.5
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..++.. .++.+.++|.|++..
T Consensus 32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEAALLIEYDVSE 94 (97)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 357899999999999999 99999999999999 777 9999999987 788999999998754
No 26
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=3.4e-11 Score=92.84 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=60.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.++.++..++....++.+.|+|.|+|+.++....+
T Consensus 48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~ 116 (124)
T 1wh1_A 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIE--VQNREEAVALLTSEENKNFSLLIARPELQLDEGWMD 116 (124)
T ss_dssp CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCB--CCSHHHHHHHHTCSSCCSCCEEEEECSSCCCCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCEEEEEEEECCEEeecccCC
Confidence 468899999999999999 99999999999999 999999999998767889999999999766555443
No 27
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=99.13 E-value=1.7e-10 Score=102.32 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=64.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||++ +.++.++..++.. .+|+++.|+|.|+|+.+++++++.
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 313 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ 313 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEE--CCCHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred CcEEEEEeCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 46899999999999999999999999999999 9999999999986 678999999999999999998875
No 28
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.12 E-value=1.8e-10 Score=83.39 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=52.7
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
++++|..|.++|||++|||++||+|++|||.+ +.++ .++..+++.. +..+.++|.|.+.
T Consensus 28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQN--VEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCEEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 46899999999999999999999999999999 7776 8999988775 7899999998754
No 29
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.12 E-value=2.9e-11 Score=90.95 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=60.1
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
++++|..|.++|||++|| |++||+|++|||.+ +. ++.++...+.. .+..+.|+|.|++...++.++|..|
T Consensus 36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~v~~~~~ 108 (110)
T 1um1_A 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS--LLGLGYLRAVDLIRH-GGKKMRFLVAKSDVETAKKIHSGPS 108 (110)
T ss_dssp SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCB--CSSCCHHHHHHHHHT-CCSEEEEEEECCCHHHHHHHSSCSS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcceeEEEEecCC
Confidence 568899999999999999 99999999999999 64 57777777765 4789999999999887777777654
No 30
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.11 E-value=2e-10 Score=84.42 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=50.7
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||++|| |++||+|++|||.+ +.++ .++..++.. .++++.++|.|+|+
T Consensus 38 g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 98 (98)
T 1ihj_A 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKD--VRNSTEQAVIDLIKE-ADFKIELEIQTFDK 98 (98)
T ss_dssp EEEEEEECTTSHHHHHCSCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 57899999999999999 99999999999999 7664 888888876 78899999999874
No 31
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.11 E-value=3.2e-11 Score=89.84 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=57.0
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
++|..|.++|||++|||++||+|++|||.+ +.++ .++...+... ++.+.++|.|+++..++.++|.
T Consensus 31 v~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~~~~~~v~p~ 98 (103)
T 1wf7_A 31 LTISSLKDGGKASQAHVRIGDVVLSIDGIS--AQGMTHLEAQNKIKAC-TGSLNMTLQRASAAAKSEPVSS 98 (103)
T ss_dssp EEECCCCTTCHHHHTTCCTTCBEEEETTEE--CSSCCHHHHHHHHHHC-SSEEEEEECCCSCCCCCCCCCC
T ss_pred EEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcCCCCCCCC
Confidence 689999999999999999999999999999 6654 6776666654 7789999999999888888775
No 32
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.10 E-value=8e-11 Score=86.65 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=53.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|||++||+|++|||.+ +.+ +.++..++....++.+.++|.|+|+
T Consensus 33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence 36889999999999999999999999999999 777 9999999987777778888888764
No 33
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=99.10 E-value=3.2e-10 Score=100.59 Aligned_cols=71 Identities=27% Similarity=0.220 Sum_probs=64.7
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R-~g~~~~l~l~p~~~ 217 (230)
.+++|..|.++|||++|||++||+|++|||++ +.+|.++..++.. ..|+++.|+|.| +|+.+++++++..+
T Consensus 242 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~ 314 (324)
T 1y8t_A 242 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP--INSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKA 314 (324)
T ss_dssp SSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEEEEEccC
Confidence 46789999999999999999999999999999 9999999998876 578999999999 99999999988644
No 34
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.09 E-value=2.6e-10 Score=84.04 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=52.1
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||++|||++||+|++|||.+ +. ++.++...+. ..|+.+.++|.|+++
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGES--VLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 4589999999999999999999999999999 76 8999988887 467899999999765
No 35
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.08 E-value=3.2e-10 Score=81.94 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=50.3
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +. ++.++...+... ++.+.++|.|++.
T Consensus 28 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 28 PLSISRLTPGGKAAQAGVAVGDWVLSIDGEN--AGSLTHIEAQNKIRAC-GERLSLGLSRAIT 87 (89)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence 4689999999999999999999999999999 65 568888777654 7889999999764
No 36
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.08 E-value=4.2e-10 Score=79.28 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=50.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++....+ .+.++|.|+|
T Consensus 21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g 81 (81)
T 2rcz_A 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSKG-KLKMVVQRDE 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSTT-EEEEEEEC--
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHCCCC-eEEEEEEeCC
Confidence 357899999999999999 99999999999999 88 99999988876544 8899998864
No 37
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.08 E-value=6.7e-11 Score=86.61 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=52.3
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++ .++..++.... +.+.++|.|+++.
T Consensus 31 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 31 PIIVTKVTERGKAEAADLRPGDIIVAINGQS--AENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp EEECCCBCTTSSHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CeEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 5788999999999999999999999999999 7665 99998887655 7899999998864
No 38
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.07 E-value=4.8e-11 Score=91.72 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=57.3
Q ss_pred CceEEEEecC--CChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEE
Q 026990 145 PFAVIDEITD--ASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLA 211 (230)
Q Consensus 145 p~~~V~~V~~--~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~ 211 (230)
.+++|..|.+ +|||++|||++||+|++|||.+ +.+| .++..++... ++.+.|+|.|+++..++.
T Consensus 44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~--v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~~~~~ 111 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTP--VRTLRVEEVEDAIKQT-SQTLQLLIEHDPVPQRLD 111 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSB--TTTSCHHHHHHHHHCC-SSCEEEEEEECSSCCCCC
T ss_pred CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHhC-CCEEEEEEEECCEEEeee
Confidence 5688999999 9999999999999999999999 8888 9999999877 889999999998765443
No 39
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.07 E-value=5e-10 Score=90.10 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=61.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHH-HH-HHHhhCCCCeEEEEEEECCEEEEEEEEecCCCCcce
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLER-LA-AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGL 222 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~d-l~-~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~ 222 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.+|.+ +. .++....++.+.++|+|+++.+++++++.. .+.
T Consensus 27 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~---~~~ 101 (166)
T 1w9e_A 27 NGIFVQLVQANSPASLVGLRFGDQVLQINGEN--CAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDS---TGH 101 (166)
T ss_dssp TEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEECCT---TSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEecCC---CCc
Confidence 46889999999999999999999999999999 888876 55 445556778999999554488888887642 234
Q ss_pred eeEEE
Q 026990 223 LGCHF 227 (230)
Q Consensus 223 LG~~~ 227 (230)
||+.+
T Consensus 102 lG~~~ 106 (166)
T 1w9e_A 102 VGFIF 106 (166)
T ss_dssp CSEEE
T ss_pred EeEEE
Confidence 67654
No 40
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.07 E-value=6.3e-10 Score=82.55 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=51.8
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||++|||++||+|++|||.++...+|+++...+....++.+.++|.|.
T Consensus 45 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 45 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 468899999999999999999999999999992224488999998777788999999884
No 41
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.06 E-value=1.2e-10 Score=86.84 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=54.5
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
.++|..|.++|||++|||++||+|++|||.+ +.+ +.++..++... ++.+.|+|.|+++.+
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~ 91 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFG--TESMTHADAQDRIKAA-SYQLCLKIDRAETRL 91 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEE--CSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence 4688999999999999999999999999999 877 99999999876 889999999988643
No 42
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.06 E-value=1e-10 Score=90.22 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=62.5
Q ss_pred CceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
..++|..|.++|||+++|| ++||+|++|||.+ +.+ +.++..++....|+.+.++|.|+|+..++.+.+.
T Consensus 33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~ 104 (127)
T 1b8q_A 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT 104 (127)
T ss_dssp SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEE--CSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECCCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEEEEE
Confidence 3578999999999999999 9999999999999 777 9999999987778899999999999888887764
No 43
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.06 E-value=4.4e-10 Score=81.54 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=52.6
Q ss_pred ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++ +||++||+|++|||.+ +. +++++..+++...+ ++.++|.|.+.
T Consensus 26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGIS--VANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp GEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--GGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 478999999999999 8999999999999999 76 89999999988776 89999988764
No 44
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-11 Score=95.39 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=60.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEE--EEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLIN--LAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~--l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.+ +.++..++....+..+.++|.|+|+... ++++|.
T Consensus 33 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~~~~~l~~~ 105 (128)
T 2kjd_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPS 105 (128)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHHHHHTCCCC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceEEEEEEEec
Confidence 36889999999999999999999999999999 777 9999999987777888899999887665 666664
No 45
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.05 E-value=3.3e-10 Score=82.98 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=50.2
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~ 207 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++.++..... ...+.++.++|.|+|+.
T Consensus 34 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRGAGTAVQMRVWRERET 95 (97)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence 46889999999999999999999999999999 777655443322 24788999999998863
No 46
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.05 E-value=7.7e-10 Score=79.14 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=49.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhC-CCCeEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMR 203 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~-~g~~v~l~V~R 203 (230)
++++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++... .++++.++|.|
T Consensus 25 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 357899999999999999 99999999999999 76 578998888765 37889998875
No 47
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=99.05 E-value=6.5e-10 Score=103.38 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=64.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||++ +.+|.++...+.. ..|+.+.++|.|+|+..++++++.
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~ 351 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTK--ITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVT 351 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECB
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 46899999999999999999999999999999 9999999998885 678999999999999999988875
No 48
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.05 E-value=4.6e-10 Score=84.18 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=50.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh--CCCCeEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK--NQGNAVPVVIM 202 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~--~~g~~v~l~V~ 202 (230)
..++|.+|.++|||++|||++||+|++|||.++.+.+|+++...+.. ..++++.+.|.
T Consensus 39 ~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 39 KAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp TEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 35789999999999999999999999999999333599999999986 46889988875
No 49
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=4.6e-10 Score=84.32 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=49.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||++|||++||+|++|||.+ +.+ +.++...+.. .++.+.|+|.|+|+.
T Consensus 46 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~ 107 (110)
T 1x5q_A 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRG-AGTAVQMRVWRESGP 107 (110)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEEECSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHhhC-CCCeEEEEEEECCcc
Confidence 45789999999999999999999999999999 666 4444444443 789999999998864
No 50
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=1.1e-10 Score=90.35 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=57.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec--CCC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR--PWQ 218 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~--~~~ 218 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++ .++...+. .++.+.|+|.|+|+..++.++|. .|.
T Consensus 47 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~~~--~~~~v~l~v~R~g~~~~~~v~~~~~~w~ 119 (128)
T 1uf1_A 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRS--FLNILHDEAVRLLK--SSRHLILTVKDVGRLPHARTTVDETKWI 119 (128)
T ss_dssp CCEEEEECTTCHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHT--TCSEEEEEEECCSCCSSCSCCCCSSCSC
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHh--cCCeEEEEEEECCcccccccccccccee
Confidence 5789999999999999999999999999999 7664 45555554 35799999999999887777775 573
No 51
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=99.04 E-value=7.2e-10 Score=98.64 Aligned_cols=67 Identities=28% Similarity=0.328 Sum_probs=61.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|.+|.++|||++|||++||+|++|||++ +.++.++..++.. ++++.|+|.|+|+.+++.++|.
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~--v~~~~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence 36899999999999999999999999999999 9999999998865 5789999999999999998874
No 52
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.04 E-value=1.4e-09 Score=100.66 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=64.7
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
.+++|..|.++|||++|||++||+|++|||++ +.+|.++...+.. ..|+.+.++|.|+|+..++++++..|
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 334 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCC
Confidence 46889999999999999999999999999999 9999999998875 46899999999999999999887654
No 53
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.04 E-value=4.8e-10 Score=86.64 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=53.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~-~~g~~v~l~V~R~g~ 206 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++ .++..++.. ..++.+.|+|.|+++
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 46889999999999999999999999999999 7776 899887775 678899999999765
No 54
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.04 E-value=4.6e-10 Score=80.23 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=48.4
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++ .++...+.. .+..+.++|.|++
T Consensus 26 ~v~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVN--TDTMTHLEAQNKIKS-ASYNLSLTLQKSK 84 (85)
T ss_dssp CCBEEEECTTSHHHHSSCCCCSBEEEETTEE--CTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 4689999999999999999999999999999 6665 777777654 3467999999876
No 55
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=7.4e-10 Score=81.89 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=50.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|||++||+|++|||.+ +.+ +.++...+.. +..+.|+|.|+|+
T Consensus 36 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 36 LGIFVSKVEEGSSAERAGLCVGDKITEVNGLS--LESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCEEEEETTEE--CSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 35889999999999999999999999999999 655 6777777754 6899999999875
No 56
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=99.03 E-value=3.9e-10 Score=101.32 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=65.6
Q ss_pred CCceEEEEecCCChhhhcCCCC-----------CCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEE
Q 026990 144 RPFAVIDEITDASPAAEDGLQL-----------GDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLA 211 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AGL~~-----------GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~ 211 (230)
..+++|.+|.++|||++|||++ ||+|++|||++ +.+++++..++.. .+|+++.|+|.|+|+.++++
T Consensus 250 ~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~ 327 (348)
T 3qo6_A 250 VSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK--VSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKIS 327 (348)
T ss_dssp CSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBC--CSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEE
T ss_pred CceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEE--eCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEE
Confidence 3688999999999999999999 99999999999 9999999999965 56899999999999999998
Q ss_pred EEecCC
Q 026990 212 VTPRPW 217 (230)
Q Consensus 212 l~p~~~ 217 (230)
+++..|
T Consensus 328 v~l~~~ 333 (348)
T 3qo6_A 328 VTLEPK 333 (348)
T ss_dssp EECEEC
T ss_pred EEEccC
Confidence 888644
No 57
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.03 E-value=8.9e-10 Score=83.58 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=51.1
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.++|..|.++|||++|||++||+|++|||.+ +. +++++..++....++++.++|.|..
T Consensus 45 ~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~--v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVD--CKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp SCEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 3679999999999999999999999999999 87 6799999888766667999998754
No 58
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.03 E-value=3.7e-10 Score=84.46 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=53.0
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..++.. .+..+.|+|.|+++.
T Consensus 44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVN--VQGMAQSDVVEVLRN-AGNPVRLLLIRRLPL 106 (108)
T ss_dssp CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEE--CTTSCHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 368899999999999999 99999999999999 766 7888888876 678999999998754
No 59
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.02 E-value=1e-09 Score=80.56 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=52.5
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||++|| |++||+|++|||.+ +. ++.++..++. ..++.+.|+|.|+++.
T Consensus 30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSS--LKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA 92 (97)
T ss_dssp SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence 357899999999999999 99999999999999 64 5788888887 5788999999998753
No 60
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=84.18 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=53.0
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhC-CCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN-QGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~-~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..+++.. .+..+.|+|.|+|+
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 121 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEE--CTTSCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence 457899999999999999 99999999999999 765 68998888875 58899999999863
No 61
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.02 E-value=1e-09 Score=81.92 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=52.8
Q ss_pred CCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 144 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.|+.+|..|.++|||++|||++||+|++|||.+ +. ++.++..++.. .++.+.++|.|.+.
T Consensus 42 ~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 42 APLQHVSAVLPGGAADRAGVRKGDRILEVNGVN--VEGATHKQVVDLIRA-GEKELILTVLSVES 103 (107)
T ss_dssp SCCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CSSEEEEEEECSSC
T ss_pred CCceEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEcCCC
Confidence 366679999999999999999999999999999 76 88999998875 57899999998653
No 62
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.02 E-value=8e-10 Score=80.04 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=49.2
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
++++|..|.++|||++|||++||+|++|||.+ +.+ +.++...+....++.+.+.+.|+++
T Consensus 27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGEN--VEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 46889999999999999999999999999999 655 7888888877666555555556543
No 63
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.02 E-value=1.2e-09 Score=79.28 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=49.8
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.++|..|.++|||++|||++||+|++|||.+ +. ++.++...+.. .+..+.++|.|++..
T Consensus 25 ~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 85 (91)
T 2f5y_A 25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRS-CPSEIILLVWRMVPQ 85 (91)
T ss_dssp SCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEECC--
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCC
Confidence 3789999999999999999999999999999 66 56888887765 456899999998754
No 64
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.02 E-value=9.1e-10 Score=81.55 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=51.1
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..++....+ .+.++|.|.+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAGN-PVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCS-SEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-cEEEEEEECCC
Confidence 368899999999999999 99999999999999 776 9999999987644 89999998653
No 65
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.02 E-value=9.5e-10 Score=80.72 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=51.8
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+... ++.+.++|.|++...
T Consensus 30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~ 93 (98)
T 2opg_A 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGID--LRKATHDEAINVLRQT-PQRVRLTLYRDEAPY 93 (98)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEECSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCCCCC
Confidence 468899999999999999 99999999999999 655 67777777654 478999999987643
No 66
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.02 E-value=1.3e-09 Score=79.64 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=51.8
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|| |++||+|++|||.+ +. ++.++...+.. .+..+.++|.|++.
T Consensus 33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 467899999999999999 99999999999999 66 67888887765 67899999998764
No 67
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=7.1e-10 Score=81.08 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=49.6
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +.+ +.++...+.. .++.+.++|.|+++
T Consensus 33 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 33 PLTISRVHAGSKAALAALCPGDLIQAINGES--TELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp CCEECCCCSSSHHHHTTCCTTCEEEEETTEE--TTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 4689999999999999999999999999999 666 5677666655 67789999999764
No 68
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.01 E-value=1.4e-09 Score=79.74 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=50.2
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.+ +.++..++... +..+.|+|.|.
T Consensus 37 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 95 (96)
T 2ego_A 37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLN--VEGIRHREIVDIIKAS-GNVLRLETLYG 95 (96)
T ss_dssp EEEEEEEECTTCHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 35789999999999999999999999999999 766 79999999876 45899988764
No 69
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.01 E-value=6.4e-10 Score=85.37 Aligned_cols=60 Identities=25% Similarity=0.266 Sum_probs=54.1
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCC-CCeEEEEEEECCEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ-GNAVPVVIMRQGGL 207 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~-g~~v~l~V~R~g~~ 207 (230)
.++|..|.++|||++|| |++||+|++|||++ +.+ ++++..+++... ++.+.|+|.|++..
T Consensus 46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 109 (122)
T 1v5q_A 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVAE 109 (122)
T ss_dssp CCEEEEECTTSHHHHSCCCCTTCCEEEETTEE--SSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred CcEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence 37899999999999999 99999999999999 866 999999998755 88999999998763
No 70
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.01 E-value=1.4e-09 Score=81.74 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=53.6
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhC-CCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKN-QGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~-~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||++|| |++||+|++|||.+ + .++.++..+++.. .+..+.++|.|+++.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEE--CTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence 457899999999999999 99999999999999 6 4468999888874 588999999998753
No 71
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=87.90 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=54.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC---CHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~---~~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +. ++.++..++.. .+..+.++|.|+++..
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 113 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQA--LDQTITHQQAISILQK-AKDTVQLVIARGSLPQ 113 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEE--CCTTSCHHHHHHHHHH-CCSEEEEEEESSCCGG
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcce
Confidence 468899999999999999 99999999999999 76 89999988876 5789999999987643
No 72
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=1.4e-09 Score=83.08 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=52.1
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.++|..|.++|||++|| |++||+|++|||.+ +. ++.++...++...+ .+.|+|.|+++.
T Consensus 54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g~~ 115 (117)
T 2fne_A 54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS--LEGVTHEEAVAILKRTKG-TVTLMVLSSDET 115 (117)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCS-SEEEEEEECSCE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEeCCcc
Confidence 57899999999999999 99999999999999 76 89999888876544 699999998864
No 73
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.00 E-value=1.7e-09 Score=100.08 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=64.5
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ 218 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~ 218 (230)
+++|..|.++|||+++||++||+|++|||++ +.+|+++..+++... ..+.|+|.|+|+.+.+.+.|..|.
T Consensus 364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~~~~~~~ 433 (436)
T 4a8c_A 364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKP-AIIALQIVRGNESIYLLMRLEHHH 433 (436)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEEEecccC
Confidence 5789999999999999999999999999999 999999999998754 489999999999999999998764
No 74
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.00 E-value=9.6e-10 Score=82.69 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=52.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhC--CCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN--QGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~--~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||+++| |++||+|++|||++ +.+ +.++..+++.. .+..+.|+|.|.+.
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~ 97 (108)
T 3cbz_A 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN--FENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97 (108)
T ss_dssp CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--TTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence 467899999999999999 99999999999999 766 99999999865 44579999999765
No 75
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.00 E-value=3.3e-10 Score=85.27 Aligned_cols=70 Identities=31% Similarity=0.424 Sum_probs=56.6
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ 218 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~ 218 (230)
..++|..|.++|||+++| |++||+|++|||++ +. ++.++..++.. .+..+.|+|.|++.. ....+|..|.
T Consensus 38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~-~~~~~~~~~~ 110 (111)
T 2dlu_A 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN--VQGMTSEQVAQVLRN-CGNSVRMLVARDPAG-DISVTSGPSS 110 (111)
T ss_dssp SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCC--CTTSCHHHHHHHHHH-HCSEEEEEEEESCTT-CCCCCCCTTC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCCC-ccCCCCCCCC
Confidence 358899999999999999 99999999999999 65 57888888876 467899999998764 3344444454
No 76
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.99 E-value=1.3e-09 Score=81.20 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=50.9
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.++|..|.++|||++|||++||+|++|||.+ +.+ +.++..+++. ++.+.|+|.|+.
T Consensus 42 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 42 GIFISKVIPDSDAHRAGLQEGDQVLAVNDVD--FQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp CCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 5789999999999999999999999999999 776 9999998887 678999998864
No 77
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.99 E-value=1.6e-09 Score=79.08 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=50.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
++++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+.. .+..+.++|.|+++
T Consensus 29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHD--LKYGTPELAAQIIQA-SGERVNLTIARPGK 90 (95)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEEEESC
T ss_pred CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEcCCc
Confidence 468999999999999999 99999999999999 644 6666666654 47899999999765
No 78
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.99 E-value=1.5e-09 Score=89.43 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=54.3
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~ 206 (230)
+.++|..|.++|||++|| |++||+|++|||++ +. +|.++..++.... +..+.++|.|+++
T Consensus 36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVA 99 (196)
T ss_dssp CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBC--STTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence 458899999999999999 99999999999999 77 7899999998754 8899999999884
No 79
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.98 E-value=1.7e-09 Score=80.06 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=52.8
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+.. .+..+.++|.|++...
T Consensus 34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~ 97 (102)
T 2i1n_A 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD--VSEVVHSRAVEALKE-AGPVVRLVVRRRQPPP 97 (102)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence 468899999999999999 99999999999999 654 7888887766 5789999999987643
No 80
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.98 E-value=3.8e-10 Score=84.14 Aligned_cols=60 Identities=28% Similarity=0.381 Sum_probs=51.1
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++ .++...+.. .+..+.++|.|++..
T Consensus 26 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 87 (106)
T 3ngh_A 26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRK-SGNSVTLLVLDGDSY 87 (106)
T ss_dssp CSCEEECCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHH-TTTEEEEEEECHHHH
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCEEEEEEEECCee
Confidence 35789999999999999999999999999999 6554 588888874 578999999987643
No 81
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=81.09 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=51.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+.. .+..+.|+|.|+++
T Consensus 38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 99 (104)
T 2djt_A 38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGES--TQGLTHAQAVERIRA-GGPQLHLVIRRPLS 99 (104)
T ss_dssp CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEE--CTTCCHHHHHHHHHH-TCSEEEEEECCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 347899999999999999 99999999999999 655 6788777766 67899999999875
No 82
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.98 E-value=2.6e-10 Score=86.07 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=57.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +. ++.++..++... +..+.++|.|++...++.++|.
T Consensus 35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~~~~~v~p~ 105 (113)
T 2g5m_B 35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS--LVGVTQSFAASVLRNT-KGRVRFMIGRERPGEQSEVAQL 105 (113)
T ss_dssp EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEE--CSSCCHHHHHHHHHHS-CSSCEEEEEECCCCTTSSCSSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC-CCeEEEEEEeCCCCCcchhhhh
Confidence 468899999999999999 99999999999999 65 477777777764 7899999999988776666664
No 83
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=80.53 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=52.5
Q ss_pred CCceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCC--CCHHHHHHHHhhC-CCCeEEEEEEEC
Q 026990 144 RPFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKN-QGNAVPVVIMRQ 204 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~-~g~~v~l~V~R~ 204 (230)
.+.++|..|.++|||++ +||++||+|++|||.+ + .+++++..+++.. .+..+.|+|.|.
T Consensus 36 ~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 36 LPTAVIANLLHGGPAERSGALSIGDRLTAINGTS--LVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp SCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCB--CTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred ccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 34679999999999999 6799999999999999 7 8999999999875 788999999874
No 84
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.97 E-value=2.4e-09 Score=82.22 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=53.2
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||++|| |++||+|++|||++ +. ++.++..+++... +..+.|+|.|++.
T Consensus 45 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 107 (123)
T 1ueq_A 45 FLQVKSVIPDGPAAQDGKMETGDVIVYINEVC--VLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107 (123)
T ss_dssp CCEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 48899999999999999 99999999999999 76 7899999998754 8899999999864
No 85
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=78.95 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=46.9
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~-~~g~~v~l~V~R~g~ 206 (230)
..+|..| ++|||+ |||++||+|++|||.+ +.++ .++...+.. ..++++.++|.|+|+
T Consensus 28 ~~~v~~v-~~spA~-aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 28 GQRVKQI-VDSPRS-RGLKEGDLIVEVNKKN--VQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SEEEEEC-CC--CC-TTCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred cEEEEEe-cCChhH-hCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 4667776 999999 9999999999999999 7665 899888874 578899999999764
No 86
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.97 E-value=2.4e-09 Score=77.84 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=49.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+... +..+.++|.|++
T Consensus 33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~g 93 (94)
T 2fe5_A 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN--LQDVRHEEAVASLKNT-SDMVYLKVAKPG 93 (94)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence 358899999999999999 99999999999999 655 67777777654 458999999876
No 87
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.96 E-value=1.3e-09 Score=79.36 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=48.7
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++ .++..+++. .+..+.+.+.|.+.
T Consensus 30 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~~~~~~~~~~r~~~ 89 (95)
T 3r68_A 30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRK-GGDQTTLLVLDKEL 89 (95)
T ss_dssp SEEEECCCTTSHHHHHTCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-TTTEEEEEEEECC-
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEECCcc
Confidence 6789999999999999999999999999999 7666 899998887 45566777766544
No 88
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.96 E-value=1.5e-09 Score=81.87 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=53.3
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCC---CCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ---GNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~---g~~v~l~V~R~g~ 206 (230)
+.++|..|.++|||+++| |++||+|++|||+. +.. ++++..+|+... +.++.|.|.|+++
T Consensus 41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~--~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES--MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSC--CTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 357899999999999999 99999999999999 554 999999998876 8899999998764
No 89
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.96 E-value=2.3e-09 Score=80.45 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=49.7
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
+++|..|.++|||++|||++||+|++|||.+ +.++ .++...+... +..+.++|.|.
T Consensus 46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 103 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQG-GNTLMVKVVMV 103 (109)
T ss_dssp SEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence 6889999999999999999999999999999 7777 8888888764 67888888774
No 90
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.96 E-value=6e-10 Score=84.40 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=56.2
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.+ +.++...++.. |+.+.++|.|+++..++.++|
T Consensus 38 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~~~~~~~~~ 106 (114)
T 2edz_A 38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRKS-GNSVTLLVLDGDSYEKAVKNQ 106 (114)
T ss_dssp CSCEEECCCTTCTTGGGTCCTTCEEEEESSSB--CSSSCHHHHHHHHHHT-CSEEEEEEECHHHHHHHHHHT
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCcceehhhcC
Confidence 45789999999999999999999999999999 655 68898888764 889999999987655444433
No 91
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=2.1e-09 Score=78.58 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=48.2
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
+|..|.++|||++|||++||+|++|||.+ + .++.++..+++.. +..+.++|.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQS--VVATPHEKIVHILSNA-VGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEE--CTTSCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 89999999999999999999999999999 7 5899999998754 77888888754
No 92
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=9.9e-10 Score=81.70 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=51.9
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQ-GNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~-g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|| |++||+|++|||.+ + .++.++..+++... +..+.|+|.|++.
T Consensus 35 ~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIP--VAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp CCBEEEECTTSTTGGGTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CeEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence 47899999999999999 99999999999999 6 45899998887654 7899999999754
No 93
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.95 E-value=1.4e-09 Score=79.37 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=47.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|||++||+|++|||.+ +.++ .++...++ .++++.|+|.|++.
T Consensus 29 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~--~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTM--VTNSSHLEVVKLIK--SGAYVALTLLGSSS 88 (93)
T ss_dssp SSCEEEEECSSSTTTTTTCCSSCEEEEETTEE--CSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence 35789999999999999999999999999999 6654 34444443 58899999999753
No 94
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.95 E-value=2.2e-09 Score=81.99 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=51.8
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||+++| |++||+|++|||.+ +. ++.++...++.. +..+.|+|.|++.
T Consensus 55 gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~ 115 (117)
T 2byg_A 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS--LEEVTHEEAVAILKNT-SEVVYLKVGKPTT 115 (117)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence 57899999999999999 99999999999999 66 788888888754 7899999999765
No 95
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.95 E-value=2.5e-09 Score=83.28 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=52.5
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhC-CCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~-~g~~v~l~V~R~g 205 (230)
++++|..|.++|||+++| |++||+|++|||++ +. ++.++..++... .+..+.|+|.|++
T Consensus 65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRL--LQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 367899999999999999 99999999999999 64 579999999875 6789999999865
No 96
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.95 E-value=5e-09 Score=78.46 Aligned_cols=67 Identities=19% Similarity=0.366 Sum_probs=53.6
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE---EEEEEEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG---LINLAVT 213 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~---~~~l~l~ 213 (230)
.++|..|.++|||+++| |++||+|++|||.++.-.++.++...++. .+..+.++|.|+++ ..+++++
T Consensus 33 gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~~~~v~l~ 103 (106)
T 4amh_A 33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKPGSGEKIMEIKLI 103 (106)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECCSSSCSEEEEEEE
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCCCeEEEEEEe
Confidence 58899999999999999 99999999999999222457888777765 46699999999764 3444443
No 97
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.95 E-value=3.1e-09 Score=80.28 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=51.1
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||++|| |++||+|++|||.+ +. ++.++...+.. .+..+.|+|.|++..
T Consensus 49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 111 (112)
T 2r4h_A 49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGET--TKNMKHSRAIELIKN-GGRRVRLFLKRGETS 111 (112)
T ss_dssp CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 357899999999999999 99999999999999 64 46777777765 678899999998753
No 98
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.95 E-value=1.4e-09 Score=80.75 Aligned_cols=57 Identities=12% Similarity=0.297 Sum_probs=49.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ |+++..+++.. +.++.++|.+.
T Consensus 36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~--v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTN--VTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBC--CCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 357899999999999999 99999999999999 774 99999999875 56788887754
No 99
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.95 E-value=1.5e-09 Score=82.23 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=52.7
Q ss_pred eEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 147 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 147 ~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
++|..|.++|||++ |||++||+|++|||.+ +.+ +.++..++.. .+..+.|+|.|+++.
T Consensus 45 ~~V~~V~~~spA~~~agL~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 45 HKIGRIIDGSPADRCAKLKVGDRILAVNGQS--IINMPHADIVKLIKD-AGLSVTLRIIPQEEL 105 (114)
T ss_dssp CEEEEECTTCTTGGGSSCCTTCBEEEETTBC--TTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred eEEEEECCCChHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 58999999999999 9999999999999999 766 7999999987 788999999998763
No 100
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.95 E-value=4e-09 Score=87.00 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=59.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC----HHHHHHHHhhCCCCeEEEEEEECCEEE--EEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLI--NLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~----~~dl~~~l~~~~g~~v~l~V~R~g~~~--~l~l~p~~~ 217 (230)
.+++|..|.++|||++|| |++||+|++|||++ +.+ +.++...+....+..+.++|.|++... .+++....+
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~ 122 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTP--IHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKK 122 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECC
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEE--cCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecC
Confidence 468899999999999998 99999999999999 766 777777776555555999999987533 344443333
Q ss_pred CCcceeeEEEE
Q 026990 218 QGRGLLGCHFR 228 (230)
Q Consensus 218 ~g~g~LG~~~~ 228 (230)
.+ ..||+.+.
T Consensus 123 ~~-~~lG~~~~ 132 (206)
T 3r0h_A 123 AG-KELGLSLS 132 (206)
T ss_dssp TT-CCCCEEEE
T ss_pred CC-CccCeEEE
Confidence 22 23566553
No 101
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.94 E-value=3.8e-09 Score=85.95 Aligned_cols=78 Identities=24% Similarity=0.292 Sum_probs=56.1
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHH--HHHhhCCCCeEEEEEEECC--EEEEEEEEecCCCC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLA--AEGRKNQGNAVPVVIMRQG--GLINLAVTPRPWQG 219 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~--~~l~~~~g~~v~l~V~R~g--~~~~l~l~p~~~~g 219 (230)
++++|..|.|+|||++|| |++||+|++|||++ +.+|.++. ..+ ...+..+.++|.|++ ....+++....|..
T Consensus 35 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~-~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~ 111 (196)
T 3gsl_A 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEAL-KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK 111 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHH-HTSCSEEEEEEEEECCCCEEEEEEEEEEBTT
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHH-HhCCCcEEEEEEecCCCccccEEEEEecCCC
Confidence 568999999999999999 99999999999999 77664443 333 345789999999976 33344444333322
Q ss_pred cceeeEEE
Q 026990 220 RGLLGCHF 227 (230)
Q Consensus 220 ~g~LG~~~ 227 (230)
.+|+.+
T Consensus 112 --~lG~~~ 117 (196)
T 3gsl_A 112 --GLGFSI 117 (196)
T ss_dssp --BSCEEE
T ss_pred --CceEEE
Confidence 345544
No 102
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.94 E-value=1.8e-09 Score=83.41 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=55.0
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..+++. .+..+.|+|.|+++..
T Consensus 46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 109 (129)
T 2dmz_A 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN--IQGFANHDVVEVLRN-AGQVVHLTLVRRKTSS 109 (129)
T ss_dssp CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBC--CTTCCHHHHHHHHHH-CCSSEEEEEEEESSSS
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCccc
Confidence 457899999999999999 99999999999999 776 9999999988 7889999999988643
No 103
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.94 E-value=1.4e-09 Score=78.58 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=49.8
Q ss_pred eEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCC-CCeEEEEEEECC
Q 026990 147 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQ-GNAVPVVIMRQG 205 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~-g~~v~l~V~R~g 205 (230)
++|..|.++|||++|| |++||+|++|||.+ + .++.++...+.... +..+.++|.|.+
T Consensus 29 ~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTP--VIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp EEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred EEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 7899999999999999 99999999999999 6 67889988887643 458999998853
No 104
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=2e-09 Score=80.21 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=51.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..++... +..+.|+|.|++
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~ 98 (105)
T 1wha_A 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVD--VTEARHDHAVSLLTAA-SPTIALLLEREA 98 (105)
T ss_dssp CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCB--CTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 468899999999999999 99999999999999 665 88988888754 778999999975
No 105
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=1.3e-09 Score=80.68 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=51.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|||++||+|++|||.+ +.+ +.++...+.. .+..+.++|.|++.
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSEEEECCCTTSTTTTTTCCTTCEEEEESSCB--CTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 46889999999999999999999999999999 665 6888888876 47899999988654
No 106
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.94 E-value=3.1e-09 Score=81.96 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=51.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ +.++..+++... ..+.++|.|..
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 119 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAG-NPVVFMVQSII 119 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-SSEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence 368899999999999999 99999999999999 766 999999998764 48999998854
No 107
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.94 E-value=9.1e-10 Score=78.50 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=48.4
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++ .++...+... +..+.++|.|+
T Consensus 24 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 24 PCVLSCVMRGSPADFVGLRAGDQILAVNEIN--VKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp SCBCCBCCTTSTTTTTTCCTTCEEEEETTEE--CSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 3789999999999999999999999999999 7776 8888877653 46799999885
No 108
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.93 E-value=1.7e-10 Score=87.30 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=55.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEecCCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPRPWQ 218 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~-g~~~~l~l~p~~~~ 218 (230)
..++|..|.++|||+++||++||+|++|||.+ +.++ .++...+... ..+.++|.|+ |+.+.+.+.+..|.
T Consensus 41 ~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~--~~v~l~v~r~~g~~~~~~~~~~~~s 113 (114)
T 1x5n_A 41 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD--FSNLDHKEAVNVLKSS--RSLTISIVAAAGRELFMTDRSGPSS 113 (114)
T ss_dssp CSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--TTSCCTTHHHHHHHHC--SSEEEEECSSTTTHHHHSSCCCCSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC--CeEEEEEEcCCCCceEEEeccCCCC
Confidence 35889999999999999999999999999999 6665 3466666543 5799999998 87666666555554
No 109
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.93 E-value=1.4e-09 Score=80.56 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=49.4
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.++|..|.++|||++|||++||+|++|||.+ +. ++.++..++.... ..+.|+|.|++
T Consensus 37 ~~~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 95 (100)
T 1whd_A 37 PVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRSCP-SEIILLVWRVS 95 (100)
T ss_dssp SCBCCBCCTTSHHHHHTCCSSCEEEEETTEE--CTTCCHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence 4678999999999999999999999999999 76 5789888887654 45999999875
No 110
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.93 E-value=1.2e-09 Score=85.12 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=52.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhh-CCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~-~~g~~v~l~V~R~ 204 (230)
+.++|..|.++|||++|| |++||+|++|||.+ + .++.++..++.. ..|+.+.|+|.|+
T Consensus 49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 49 PYLQISHLINKGAAASDGILQPGDVLISVGHAN--VLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSC--CTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 446799999999999999 99999999999999 7 489999999987 4689999999997
No 111
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=6.1e-10 Score=84.65 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=54.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGLINLAV 212 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~~~l~l 212 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++.++...+. ...++.+.|+|.|+++.+++.+
T Consensus 42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~ 108 (117)
T 1uit_A 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGIN--LRSATEQQARLIIGQQCDTITILAQYNPHVHQLSS 108 (117)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEECEETTEE--TTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCeEEEEEEECCchhhhhh
Confidence 36889999999999999999999999999999 887766655543 3568899999999887655443
No 112
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=7.4e-10 Score=81.94 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=48.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +.++.+.. ++.. ..++.+.|+|.|+++
T Consensus 36 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~-~~~~~~~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKS--LARVTHAE-AVKALKGSKKLVLSVYSAGR 94 (101)
T ss_dssp CEEEEEECTTSHHHHHTCCSSCCEEEETTEE--CSSCCHHH-HHHHSSSSSSCCEEECCCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHH-HHHhhcCCCeEEEEEEECCc
Confidence 5789999999999999999999999999999 77776633 3332 456788999999875
No 113
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.93 E-value=1e-10 Score=104.24 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 217 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~ 217 (230)
.+++|..|.++|||++|||++||+|++|||++ +.++.++..++.. ++++.|+|.|+|+.++++++|..|
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p~~~ 322 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQS--VVSANDVSDVIKR--ESTLNMVVRRGNEDIMITVIPEEI 322 (332)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEeee
Confidence 36789999999999999999999999999999 9999999888864 778999999999999999999854
No 114
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.93 E-value=3.9e-09 Score=76.37 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=47.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++ .++...+. ..++.+.++|.|+
T Consensus 32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVR--TRDFDCCLVVPLIA-ESGNKLDLVISRN 90 (91)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence 46889999999999999999999999999999 7664 44445554 3578899999885
No 115
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.93 E-value=2.6e-09 Score=78.91 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=50.3
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+.. .+..+.++|.|+++
T Consensus 37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRN-AGYAVSLRVQHRLE 98 (101)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHT-CCSEEEEEEEEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 357899999999999999 99999999999999 655 5777777765 47789999998764
No 116
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.92 E-value=4e-09 Score=76.76 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=50.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .+.++.++|.|+|+
T Consensus 33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN--LQGFTNQQAVEVLRH-TGQTVLLTLMRRGE 94 (97)
T ss_dssp CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 357899999999999999 99999999999999 65 45677776665 78899999998764
No 117
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.92 E-value=1.5e-09 Score=82.70 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.. .+..+.|+|.|++..
T Consensus 50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP--LTSKTYEEVQSIISQ-QSGEAEICVRLDLNM 111 (117)
T ss_dssp EEEEEEECTTCHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence 57899999999999999 99999999999999 64 48888888876 677899999998763
No 118
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.92 E-value=3.6e-09 Score=77.05 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||+++| |++||+|++|||.+ + .+++++..+++...+ .+.++|.|...
T Consensus 28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~~~~~ 89 (93)
T 3o46_A 28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIP--VEDKRPEEIIQILAQSQG-AITFKIIPGSK 89 (93)
T ss_dssp CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--STTSCHHHHHHHHHHCCE-EEEEEEECC--
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-eEEEEEEeCCC
Confidence 357899999999999999 99999999999999 7 789999999987655 88888887543
No 119
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2.8e-09 Score=77.69 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=50.8
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC-CCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v-~~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
..++|..|.++|||++|| |++||+|++|||.+ + .+++++..+++.. +.++.++|.|.
T Consensus 29 ~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~--v~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP--VGSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 457899999999999987 99999999999999 8 8999999999864 66889988874
No 120
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.92 E-value=2.2e-09 Score=81.71 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=55.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINL 210 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l 210 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +. ++.++..++....+..+.++|.|+++..++
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~~ 108 (119)
T 1x6d_A 42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKS--LKGTTHHDALAILRQAREPRQAVIVTRKLTPEAM 108 (119)
T ss_dssp SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEE--CSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccch
Confidence 458899999999999999 99999999999999 65 688998888877777777889998865443
No 121
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.92 E-value=3.8e-09 Score=81.81 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=52.7
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||++|| |++||+|++|||.+ +. ++.++..+++... |+.+.|+|.|++.
T Consensus 44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 47899999999999999 99999999999999 65 5889999998765 8899999999863
No 122
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.91 E-value=1.3e-09 Score=82.78 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
.++|..|.++|||++|||++||+|++|||.+ +. +|+++..++....++.+.|+|.|
T Consensus 37 ~v~V~~V~~~spA~~aGL~~GD~Il~InG~~--v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVD--CKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SCEECCCCTTSSHHHHHCCTTCEEEEETTEE--CSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 3678999999999999999999999999999 87 99999999987777788898876
No 123
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.91 E-value=2.7e-09 Score=81.36 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=52.9
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||+++| |++||+|++|||.+ + .+++++..+++ ..+..+.|+|.|+++
T Consensus 43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~--v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTS--MEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEE--TTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 37899999999999999 99999999999999 7 77999999998 478899999999775
No 124
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.90 E-value=5e-09 Score=78.08 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=51.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .++.+.++|.|++..
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS--LVGLSQERAAELMTR-TSSVVTLEVAKQGAI 100 (106)
T ss_dssp EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEECCCSS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 457899999999999999 99999999999999 65 57788777765 678999999998753
No 125
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.90 E-value=2.9e-09 Score=82.42 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=52.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
++++|..|.++|||++|| |++||+|++|||.+ + .++.++..++... +..+.|+|.|+++
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIE--VSGKSLDQVTDMMIAN-SRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEE--STTCCHHHHHHHHHHT-TTSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence 468899999999999999 99999999999999 6 7899999988754 4579999999874
No 126
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.90 E-value=6.6e-09 Score=75.28 Aligned_cols=59 Identities=24% Similarity=0.214 Sum_probs=49.6
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .+..+.++|.|.+.
T Consensus 29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGED--VRNATQEAVAALLKC-SLGTVTLEVGRIST 90 (92)
T ss_dssp CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 357899999999999999 99999999999999 64 36777777665 46789999998763
No 127
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.90 E-value=4.4e-09 Score=79.56 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=51.9
Q ss_pred CceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++||| ++||+|++|||.+ +. ++.++..++.... ..+.|+|.|+++
T Consensus 48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 109 (113)
T 1va8_A 48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIE--IRGKDVNEVFDLLSDMH-GTLTFVLIPSSG 109 (113)
T ss_dssp SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 4578999999999999999 9999999999999 76 7889999887654 479999998875
No 128
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=79.35 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=49.3
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCC-HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~-~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++| ||++||+|++|||.+ +.+ +.++...++. .++.+.|+|.|+++
T Consensus 36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~--v~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTP--LYGSRQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp EEEECCCCTTSHHHHHTSCCTTCEEEEETTEE--CCSCSHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCCEEEEECCEE--ccchHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 3689999999999999 999999999999999 666 4666666665 46789999999875
No 129
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.89 E-value=1.5e-09 Score=83.28 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=51.3
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
.++|..|.++|||+++ ||++||+|++|||.+ +. ++.++..+++.. +..+.|+|.|+++..
T Consensus 54 ~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~ 116 (120)
T 2iwo_A 54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS--TEGMTHTQAVNLLKNA-SGSIEMQVVAGGDVS 116 (120)
T ss_dssp EEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCBHHHHHHHHHHC-CSEEEEEEECCTTSS
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCccc
Confidence 4789999999999999 999999999999999 64 478888888765 457999999987644
No 130
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.89 E-value=2.8e-09 Score=79.50 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=50.1
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||+ +||++||+|++|||.+ +.++.++...+. ...++.+.++|.|+++.
T Consensus 39 ~gv~V~~V~~~spA~-agl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVS--MDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCEEEEEECTTSTTB-TTBCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCEEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence 368899999999999 9999999999999999 887766655443 35688999999998753
No 131
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.88 E-value=2.7e-09 Score=79.80 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=52.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +. ++.++...+.. .+..+.++|.|++..
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 104 (108)
T 1q7x_A 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQSP 104 (108)
T ss_dssp CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEE--CBSCTTSHHHHHHHH-TTSEEEEEEECCCCS
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 468899999999999999 99999999999999 65 67788777776 478999999998753
No 132
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.88 E-value=4.6e-09 Score=78.78 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=51.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||+++| |++||+|++|||.++...++.++..+++...+..+.|+|.|.
T Consensus 44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 457899999999999999 999999999999992224589999999887666899999874
No 133
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=8.2e-10 Score=85.23 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=52.3
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|||++||+|++|||.+ +. ++.++..+++.. +..+.|+|.|+++
T Consensus 62 gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGES--VIGKTYSQVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp CCCBCCCCSSSHHHHHTCCSSCCCCEETTEE--CSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence 4789999999999999999999999999999 76 899999988764 8899999998764
No 134
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.88 E-value=6.7e-09 Score=99.73 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=60.6
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
+++|..|.++|||++|||++||+|++|||.+ + ++.++..++.. .+|++|.|+|.|+|+.+++++++.
T Consensus 497 gv~V~~V~~~spA~~AGL~~GD~I~aInG~~--v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 564 (597)
T 4fgm_A 497 GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQ--A-TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQ 564 (597)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--C-CTTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECC
T ss_pred eEEEEEeCCCChHHHCCCCCCCEEEEECCEE--C-CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 5789999999999999999999999999999 7 47788888875 578999999999999999999886
No 135
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.87 E-value=6.2e-09 Score=85.87 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=52.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||+++||++||+|++|||.+ +.+ +.++...++. |..+.++|.|+|.
T Consensus 110 ~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYS--ISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 35789999999999999999999999999999 766 9999988866 7899999999987
No 136
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.87 E-value=6e-09 Score=79.22 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=48.8
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
++++|..|.++|||++|| |++||+|++|||.+ + .++.++..++.... ..+.++|.+
T Consensus 50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~~ 108 (114)
T 2gzv_A 50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVK-GEVTIHYNK 108 (114)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence 358899999999999999 99999999999999 7 88999999887654 457787765
No 137
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.87 E-value=1.8e-09 Score=79.77 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=50.0
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+. ..+..+.|+|.|++.
T Consensus 37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGES--TRDMTHARAIELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp EEECCCBCTTSHHHHHCSSCTTCEEEEETTEE--CSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 57889999999999999 99999999999999 654 677777776 457889999999875
No 138
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.87 E-value=5.4e-09 Score=80.63 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=52.4
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC---CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~---~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..+++. .+..+.|+|.|+..
T Consensus 55 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 55 DIFVKDVQPGSVADRDQRLKENDQILAINHTP--LDQNISHQQAIALLQQ-TTGSLRLIVAREPV 116 (128)
T ss_dssp EEEEECCCTTSHHHHTCCCCSSCBEEEESSCB--CSTTSCHHHHHHHHHH-CCSEEEEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 57899999999999999 99999999999999 76 89999998877 67899999999754
No 139
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.86 E-value=4.3e-09 Score=79.58 Aligned_cols=61 Identities=30% Similarity=0.355 Sum_probs=52.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+... +..+.|+|.|++..+
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~~~ 106 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD--LRNSSHEEAITALRQT-PQKVRLVVYRDEAHY 106 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEE--CSSSCHHHHHHHHHTC-CSEEEEEEECCSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEeCCccc
Confidence 367899999999999999 99999999999999 765 78888877654 478999999987643
No 140
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.86 E-value=9.3e-09 Score=76.06 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=49.1
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
+.++|..|.++|||++|| |++||+|++|||.+ + .++.++...+.. .++.+.++|.|++
T Consensus 35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 368899999999999999 99999999999999 6 456666666654 5678999999874
No 141
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.86 E-value=5.1e-09 Score=85.15 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=54.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLIN 209 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~ 209 (230)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ |.++...++. .++.+.|+|.|++....
T Consensus 130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~ 194 (196)
T 3gsl_A 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG--LEDVMHEDAVAALKN-TYDVVYLKVAKPSNAET 194 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCBHHHHHHHHHS-CCEEEEEEEEEESCCCE
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCCc--CCCCCHHHHHHHHHc-CCCeEEEEEeCCCCccc
Confidence 357899999999999999 99999999999999 777 9999998865 47889999999876543
No 142
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.86 E-value=1.1e-08 Score=73.80 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEE
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
.++|..|.++|||++| ||++||+|++|||.+ +. ++.++...+.. .+..+.++|.|
T Consensus 31 g~~V~~V~~~spA~~aggl~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r 88 (90)
T 1qav_A 31 PILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKK-TGKEVVLEVKY 88 (90)
T ss_dssp EEEEEEECTTSHHHHTTCCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence 5789999999999999 999999999999999 64 57777777765 46789999887
No 143
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=3.5e-09 Score=79.13 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=51.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhC----CCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN----QGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~----~g~~v~l~V~R~g 205 (230)
|.++|..|.++|||+++| |++||+|++|||.+ +. +|+++..+++.. .++++.+.|.|.+
T Consensus 32 ~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~ 97 (103)
T 1ufx_A 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT--LRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103)
T ss_dssp SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEE--CTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence 556899999999999999 99999999999999 64 599999988764 6778899888864
No 144
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.85 E-value=1.9e-08 Score=82.78 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=50.2
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECC
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.++|..|.++|||++| ||++||+|++|||++ +.++ .++..++.. .+..+.++|.|++
T Consensus 34 ~~~V~~v~~~spA~~aggl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 34 KPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN--LAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp CSEEEEECTTSHHHHTTSCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CeEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 4789999999999999 999999999999999 8777 888876654 5779999999976
No 145
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.84 E-value=9.8e-09 Score=78.84 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=49.5
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
+.++|..|.++|||++|| |++||+|++|||.+ +. ++.++...++...+ .+.++|.|
T Consensus 45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r 103 (125)
T 3hpk_A 45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVKG-EVTIHYNK 103 (125)
T ss_dssp SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHSCS-EEEEEEEE
T ss_pred CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEE
Confidence 457899999999999999 99999999999999 65 78999999887554 59999987
No 146
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.83 E-value=1.3e-08 Score=92.69 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=60.7
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE---EEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG---LINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~---~~~l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||++ +.++ .++...+....|+.+.++|.|+|. .+++++++.
T Consensus 99 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~ 172 (388)
T 1fc6_A 99 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTA--VKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ 172 (388)
T ss_dssp SCEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred CcEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence 45789999999999999999999999999999 7664 788888887789999999999988 777877664
No 147
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=1.8e-08 Score=75.27 Aligned_cols=60 Identities=18% Similarity=0.353 Sum_probs=49.8
Q ss_pred CceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||+++ ||++||+|++|||.++...++.++...++. .+..+.|+|.|.+
T Consensus 41 ~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 101 (107)
T 1uhp_A 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQVLRRT 101 (107)
T ss_dssp CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence 45889999999999999 999999999999999222357777777765 4678999998864
No 148
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.83 E-value=1.1e-08 Score=74.11 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=48.9
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.++|..|.++|||+++| |++||+|++|||.+ + .+++++..+++...+ .+.+++.+.
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~-~v~L~v~~~ 80 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTV--TENMSLTDARKLIEKSRG-KLQLVVLRD 80 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEeCC
Confidence 57899999999999999 99999999999999 6 789999999987654 778877653
No 149
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-08 Score=74.22 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=49.2
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++|| |++||+|++|||.+ +. ++.++...+... +..+.++|.|+.
T Consensus 30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS--VEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEE--CTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 357899999999999996 99999999999999 65 578888887764 457899998864
No 150
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=1.1e-08 Score=76.33 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=50.0
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.. .+..+.|+|.|++
T Consensus 40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 100 (107)
T 1wf8_A 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS--LVGVTQNFAATVLRN-TKGNVRFVIGREK 100 (107)
T ss_dssp EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEE--CBSCCHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Confidence 467899999999999999 99999999999999 65 57777777766 4789999999864
No 151
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.83 E-value=7.1e-09 Score=76.11 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=46.5
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ +.++...+.. .+..+.++|.|.
T Consensus 31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 90 (96)
T 2qkv_A 31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVSYALFKG-ANGKVSMEVTRP 90 (96)
T ss_dssp SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence 357899999999999999 99999999999999 654 4555555544 456799999885
No 152
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.82 E-value=1.1e-08 Score=78.42 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=49.9
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.++|..|.++|||++|| |++||+|++|||.+ +. ++.++..+++.. +..+.++|.|.
T Consensus 54 gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 54 PIYVISVEPGGVISRDGRIKTGDILLNVDGVE--LTEVSRSEAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp CEEEEEECTTSHHHHHCSSCTTCEEEEETTEE--GGGSCHHHHHHHHHSC-CSEEEEEEEEE
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 47899999999999999 99999999999999 76 899998888764 67899999874
No 153
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.2e-08 Score=77.84 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=51.1
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+... +..+.|+|.|++..
T Consensus 47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~ 109 (120)
T 2eno_A 47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRNA-GYAVSLRVQHRLQV 109 (120)
T ss_dssp CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEE--CCSCCHHHHHHHHHHH-CSEEEEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCcC
Confidence 357899999999999999 99999999999999 655 66777777653 67899999997653
No 154
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.82 E-value=6.2e-09 Score=77.39 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=47.8
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI 201 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V 201 (230)
.+++|..|.++|||++|||++||+|++|||.+ +. ++.++..++....+ .+.|+|
T Consensus 48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVS--TEGFTYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCC-cEEEEE
Confidence 46889999999999999999999999999999 77 89999999987754 777765
No 155
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.81 E-value=1.3e-08 Score=79.35 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=50.8
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||++|||++||+|++|||.+ +. ++.++...++. .+..+.|+|.|.+.
T Consensus 66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR 125 (132)
T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSB--CTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 5789999999999999999999999999999 65 58888888876 66789999988654
No 156
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.81 E-value=1.2e-08 Score=94.94 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=59.2
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~ 213 (230)
+++|.+|.++|||+++||++||+|++|||++ +.+++++..++.. .++.+.++|.|+|+.+.+.++
T Consensus 387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~--v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l~ 451 (451)
T 3pv2_A 387 GVQVVGASENSAGWRAGIRPGDIIISANKKP--VTDVKSLQTIAQE-KKKELLVQVLRGPGSMYLLVI 451 (451)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHTTS-SCSCEEEEEEETTEEEEEEEC
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhc-CCCeEEEEEEECCEEEEEEeC
Confidence 5689999999999999999999999999999 9999999999876 678899999999998877663
No 157
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.80 E-value=1e-08 Score=84.44 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=54.6
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI 208 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~ 208 (230)
.++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.. .++.+.|+|.|+++.+
T Consensus 136 g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 136 PVVITCVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence 57899999999999999 99999999999999 88 99999999987 7889999999987654
No 158
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.80 E-value=1.6e-08 Score=73.68 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++ ||++||+|++|||.+ +.+ +.++...+.. .++.+.++|.|+.
T Consensus 35 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 35 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV 93 (95)
T ss_dssp CCEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCBHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred CCEEEEEECCCCchhh-CCCCCCEEEEECCEE--cCCCCHHHHHHHhhc-CCCeEEEEEEeCC
Confidence 4588999999999999 999999999999999 655 6677666654 5789999999853
No 159
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.80 E-value=1.9e-08 Score=74.44 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=45.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
.+++|..|.++|||++|||++||+|++|||++ +. +++++..++.. ..+.++|.
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~l~~~l~~---~~l~ltV~ 89 (94)
T 3kzd_A 35 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVR 89 (94)
T ss_dssp CEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC---CeEEEEEE
Confidence 46889999999999999999999999999999 65 68999988863 46677665
No 160
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.79 E-value=6.4e-09 Score=80.46 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=51.5
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhC------CCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN------QGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~------~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||+++| |++||+|++|||+. +.+ +.++..+|+.. .+..|.|+|.|++.
T Consensus 56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET--LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp EEEEEECCSSSSTHHHHTSCSCCBEEEETTEE--STTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 57899999999999999 99999999999999 654 77998888753 47899999999764
No 161
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.79 E-value=1.8e-08 Score=75.03 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=47.6
Q ss_pred ceEEEEecCCChhhhcC--CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC---CCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAEDG--LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG--L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~---g~~v~l~V~R~ 204 (230)
.++|..|.++|||++|| |++||+|++|||.+ +. ++.++...++... +..+.|+|.|+
T Consensus 44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CeEEEEECCCCchHHcCCccCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 46899999999999999 99999999999999 65 5577777776543 35899998874
No 162
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.79 E-value=1.7e-08 Score=77.49 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=53.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEE-EEEEEe
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI-NLAVTP 214 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~-~l~l~p 214 (230)
..++|..|.++|||++|| |++||+|++|||.+ +. ++.++...++.. +..+.|+|.|++... .+.++|
T Consensus 51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~~P 121 (124)
T 2daz_A 51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQI--LYGRSHQNASAIIKTA-PSKVKLVFIRNEDAVNQMASGP 121 (124)
T ss_dssp CCEEEEEECTTSHHHHHTCCCTTCEECEESSCB--CTTSCHHHHHHHHHHS-CSEEEEEEEECTTHHHHBCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcccccccCC
Confidence 467899999999999999 99999999999999 64 477777777654 458999999987643 344444
No 163
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=98.79 E-value=1.7e-08 Score=72.75 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=47.0
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
.|..|.++|||++|||++||+|++|||+.+.-.+.+++...|+ ..+..+.++|..
T Consensus 26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 4789999999999999999999999999933356889999998 567788888764
No 164
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.78 E-value=1.2e-08 Score=76.60 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=46.3
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ ..++...+.. .+..+.++|.|.
T Consensus 25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 84 (106)
T 2la8_A 25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP 84 (106)
T ss_dssp SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCB--CSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 357899999999999999 99999999999999 654 4555555544 456799999885
No 165
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.78 E-value=6.8e-09 Score=80.57 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=52.3
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||+++ ||++||+|++|||+. +. +++++..+++...+..+.++|.|.+.
T Consensus 58 ~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTA--MQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp CCEEEEECSSCCCSSSCCCCTTCCEEECSSCB--GGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence 4789999999999999 999999999999999 54 48999999988777889999998653
No 166
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=8.3e-09 Score=78.75 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=48.0
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++|||++||+|++|||.+ +.+ |.++..++.. ..+.|+|.|..
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCB--GGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 35789999999999999999999999999999 655 7888888864 48889888854
No 167
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=8.7e-09 Score=76.66 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=49.7
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||++|||++||+|++|||.+ +. ++.++...+... +..+.++|.|.+.
T Consensus 32 ~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~ 92 (106)
T 2eei_A 32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGEN--VEDASHEEVVEKVKKS-GSRVMFLLVDKET 92 (106)
T ss_dssp CSCEECCCCTTSHHHHHTCCSSEEEEEETTEE--CTTCCHHHHHHHHHHH-CSEEEEEECCTTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCch
Confidence 45789999999999999999999999999999 64 567887777653 6788999988764
No 168
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.77 E-value=2.5e-08 Score=71.45 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=46.6
Q ss_pred ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990 146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 203 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R 203 (230)
.++|..|.++|||++ +||++||+|++|||.+..-.++.++...++. .+..+.++|.+
T Consensus 29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~ 86 (87)
T 4e34_A 29 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY 86 (87)
T ss_dssp EEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 368999999999999 7999999999999999222567888888875 45678887764
No 169
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=7.9e-09 Score=75.92 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=48.5
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.++|..|.++|||+ +||++||+|++|||.+ +. ++.++...+.. .++.+.++|.|++
T Consensus 32 ~~~V~~V~~~spA~-agL~~GD~Il~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 32 PLTVVAVTAGGSAH-GKLFPGDQILQMNNEP--AEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SCBCCCBCSSSSST-TTSCTTCBEEEESSCB--STTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CeEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 47899999999996 9999999999999999 64 47777777766 6789999999976
No 170
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.75 E-value=1.7e-09 Score=100.44 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=60.9
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~ 215 (230)
.+++|..|.++|||++|||++||+|++|||.+ +.++.++...+.. ..|+.+.|+|.|+|+.+++++++.
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 355 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSB--CCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC--
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEe
Confidence 36889999999999999999999999999999 9999999988875 578999999999998887777653
No 171
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.74 E-value=5.6e-09 Score=79.46 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=50.8
Q ss_pred ceEEEEecCCChhhhc--CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC---CCeEEEEEEECCEEE
Q 026990 146 FAVIDEITDASPAAED--GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQGGLI 208 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A--GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~---g~~v~l~V~R~g~~~ 208 (230)
.++|..|.++|||++| ||++||+|++|||.+ +. ++.++..++.... +..+.++|.|+....
T Consensus 42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~--v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~ 109 (119)
T 2cs5_A 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYD 109 (119)
T ss_dssp EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBC--TTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCCCC
T ss_pred CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCCEEEEEEEcccccC
Confidence 4789999999999999 999999999999999 54 5788888777543 358999999986543
No 172
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.74 E-value=2e-08 Score=76.64 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=49.5
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCC--HHHHHHHHhhC---CCCeEEEEEEEC
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKN---QGNAVPVVIMRQ 204 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~---~g~~v~l~V~R~ 204 (230)
.++|..|.++|||++| ||++||+|++|||.+ +.+ ++++...++.. .|+.+.|+|.|.
T Consensus 44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKI--VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp SEEEEECCTTSHHHHHCSSCTTCEEEEESSCB--CTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 3789999999999999 999999999999999 654 88888888753 478999999984
No 173
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.74 E-value=2.1e-08 Score=76.11 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=47.4
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHH--HHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLER--LAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~d--l~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++|| |++||+|++|||.+ +.++.+ ....+ ...+..+.++|.|++
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~-~~~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIAL-KNAGQTVTIIAQYKP 98 (119)
T ss_dssp CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEE--CTTCCHHHHHHHH-HTSCSEEEEEEEECH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHH-HcCCCeEEEEEEECC
Confidence 468899999999999999 99999999999999 776643 33333 346789999999875
No 174
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.73 E-value=5.5e-09 Score=78.55 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=50.7
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.. .+..+.|+|.|+.
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 104 (111)
T 1uju_A 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQS--LLGLTHGEAVQLLRS-VGDTLTVLVCDGF 104 (111)
T ss_dssp CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCB--CTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 357899999999999999 99999999999999 66 78888888865 5788999988864
No 175
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.73 E-value=2.2e-08 Score=82.35 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=53.3
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..++... ++.+.|+|.|++
T Consensus 135 ~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIR--LDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEE--GGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCEEEEEECCCCcHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 357899999999999999 99999999999999 777 99999999887 889999999976
No 176
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.73 E-value=7.6e-08 Score=78.70 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=54.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEE---CCEEEEEEEEe
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMR---QGGLINLAVTP 214 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R---~g~~~~l~l~p 214 (230)
.+++|..|.++|||++ ||++||+|++|||.+ +.+ +.++...+... +..+.|+|.| +|+..++.+.+
T Consensus 24 ~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~ 94 (195)
T 2qbw_A 24 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRV 94 (195)
T ss_dssp CSEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEe
Confidence 4689999999999999 999999999999999 654 56666666654 4589999999 88877666654
No 177
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.73 E-value=3.6e-08 Score=80.27 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=50.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+++|..|.++|||+++| |++||+|++|||..+.-.++.++...++. .+..+.|+|.|+
T Consensus 111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R~ 170 (170)
T 3egg_C 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRE 170 (170)
T ss_dssp BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 457899999999999999 99999999999999222678888888877 567999999985
No 178
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.72 E-value=3.1e-08 Score=72.81 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=49.4
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~ 206 (230)
+++|..|.+ +|++|||++||+|++|||.+ +. ++.++..+++..+ ++.+.|+|.|+++
T Consensus 33 Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 33 GQRVKQILD--IQGCPGLCEGDLIVEINQQN--VQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp EEEEEEESC--GGGSTTCCSSCEEEEETTEE--CSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CEEEEEEec--ccccCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 578889988 47899999999999999999 65 4699999998764 8999999999875
No 179
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.71 E-value=2.4e-08 Score=75.69 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=50.0
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .++.+.|+|.|...
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVD--LQNASHSEAVEAIKN-AGNPVVFIVQSLSS 111 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCB--CTTCCHHHHHHHHHT-SCSSEEEEECCBSC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 468899999999999999 99999999999999 64 47787777765 57889999987543
No 180
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.71 E-value=5.2e-08 Score=72.38 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||+++ ||++||+|++|||.++...++.++..+++... ..+.++|.|...
T Consensus 36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~ 96 (103)
T 2dc2_A 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVAL 96 (103)
T ss_dssp EEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC-SEEEEEEEECC-
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEecCC
Confidence 4689999999999995 99999999999999922245889988887654 488898888643
No 181
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.71 E-value=2.1e-08 Score=74.22 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
..++|..|.++|||++ ||++||+|++|||.+ +.+ +.++...+.. .+..+.++|.|+.
T Consensus 43 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 43 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV 101 (103)
T ss_dssp CSEECCCBSSSSTTSS-SCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCEEEEEECCCCchHH-CCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence 4578999999999999 999999999999999 654 7777777763 5788999999863
No 182
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-09 Score=92.56 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=58.2
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeE-EEEEEECCEEE--EEEEEec
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAV-PVVIMRQGGLI--NLAVTPR 215 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v-~l~V~R~g~~~--~l~l~p~ 215 (230)
++++|..|.++|||+++||++||+|++|||.. +. ++.++..++... |..+ .++|.|+|+.+ ++.++|.
T Consensus 33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~--V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~~~~~~v~v~p~ 105 (216)
T 2krg_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAG-GDETKLLVVDRETDEFFKKCRVIPS 105 (216)
T ss_dssp CSCBEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCTHHHHHHHHHH-CSEEEEEECCHHHHHHHHHHTCCCC
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEEECCEEEEEEEEEEEe
Confidence 36789999999999999999999999999999 77 899999888765 7788 89999988765 5555554
No 183
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.65 E-value=1e-08 Score=93.48 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=54.5
Q ss_pred CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecCCCC
Q 026990 144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPWQG 219 (230)
Q Consensus 144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~~~~g 219 (230)
.|+++|..|.+||||++|| |++||+|++|||.+ +.+| .++...+... .+..+.++|.|++...++.+... ..
T Consensus 231 ~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~--~~ 306 (388)
T 3suz_A 231 LPTVILANMMNGGPAARSGKLSIGDQIMSINGTS--LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRP--DL 306 (388)
T ss_dssp SCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEE--CSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC-----------
T ss_pred CCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhccCCCccccccccccccceeeEeec--CC
Confidence 3568899999999999999 99999999999999 7776 6777777764 56779999999887776666332 12
Q ss_pred cceeeEEE
Q 026990 220 RGLLGCHF 227 (230)
Q Consensus 220 ~g~LG~~~ 227 (230)
.+.||+.+
T Consensus 307 ~~~lG~~i 314 (388)
T 3suz_A 307 KYQLGFSV 314 (388)
T ss_dssp --------
T ss_pred CCccceEE
Confidence 23466654
No 184
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.63 E-value=4.8e-08 Score=74.09 Aligned_cols=59 Identities=24% Similarity=0.274 Sum_probs=49.4
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 207 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~ 207 (230)
..++|..|.++|||+ +||++||+|++|||.+ +. ++.++...+.. .++.+.|+|.|.+..
T Consensus 46 ~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 106 (117)
T 2csj_A 46 TSIVISDVLPGGPAD-GLLQENDRVVMVNGTP--MEDVLHSFAVQQLRK-SGKIAAIVVKRPRKV 106 (117)
T ss_dssp CBCEEEEECTTSSHH-HHBCTTCEEEEESSCB--CBTCCHHHHHHHHHH-SCSEEEEEEEEEEEC
T ss_pred CCEEEEEECCCCccc-ccCCCCCEEEEECCEE--CCCcCHHHHHHHHhc-CCCeEEEEEEECCcc
Confidence 357899999999997 9999999999999999 64 46777777766 578999999996553
No 185
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.63 E-value=3.9e-08 Score=73.72 Aligned_cols=59 Identities=25% Similarity=0.288 Sum_probs=48.9
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
..++|..|.++|||+++| |++||+|++|||.+ +.++ .++...+. ..+..+.++|.|++.
T Consensus 39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~~~-~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVN--LRNATHEQAAAALK-RAGQSVTIVAQYRPE 100 (113)
T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCB--CTTCCHHHHHHHHH-SCCSEEEEEEECCHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCcEEEEEEECcc
Confidence 457789999999999999 99999999999999 6654 66666665 457889999988653
No 186
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.63 E-value=6.1e-08 Score=88.58 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=53.5
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhh-CCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRK-NQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~-~~g~~v~l~V~R~g 205 (230)
.+++|..|.+||||++|||++||+|++|||.+ +. +++++...+.. ..|+.+.|+|.|++
T Consensus 31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~--v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp TEEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 46889999999999999999999999999999 65 49999999987 68899999999975
No 187
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.59 E-value=1.5e-07 Score=89.31 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=56.6
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHH----------HHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE----------RLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 213 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~----------dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~ 213 (230)
.++.|..|.++|||+++ |++||+|++|||++ +.+.. +|..++.. .+|+++.|+|.|+|+.++++++
T Consensus 277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~--V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vt 353 (539)
T 4fln_A 277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLH--VGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVV 353 (539)
T ss_dssp BCEEEEEECTTSGGGGT-CCTTCEEEEETTEE--CBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEE
T ss_pred CceeeecccCCChHHhC-ccCCCEEEEECCEE--eCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence 37899999999999886 99999999999999 64422 24555654 6899999999999999998887
Q ss_pred ec
Q 026990 214 PR 215 (230)
Q Consensus 214 p~ 215 (230)
..
T Consensus 354 l~ 355 (539)
T 4fln_A 354 LR 355 (539)
T ss_dssp CB
T ss_pred Ec
Confidence 64
No 188
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.58 E-value=2.5e-08 Score=91.56 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=49.7
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
+++|..|.++|||++|||++||+|++|||.+ +.+++ +..++.. .|.++.|+|.|+|+
T Consensus 91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~--v~~~~-~~~~l~~-~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDY--ITKKV-ESELLQG-STRQLQIGVYKEVV 147 (403)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTBC--BCTTT-GGGGTSC-SCEEEEEEEEEEEC
T ss_pred eEEEEEeCCCChHHHcCCCCCCEEEEECCEE--ccchh-HHHHhhC-CCCEEEEEEEeCCc
Confidence 4789999999999999999999999999999 77774 5566666 88999999999764
No 189
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.52 E-value=1.6e-07 Score=77.25 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=48.8
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
..++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..+++. .++.+.|+|.|.
T Consensus 136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~-~~~~v~L~V~R~ 195 (206)
T 3r0h_A 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP 195 (206)
T ss_dssp SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred ceEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 457899999999999999 99999999999999 764 5777777765 456899999884
No 190
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.47 E-value=2.8e-07 Score=86.06 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=53.1
Q ss_pred CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhh-CCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~-~~g~~v~l~V~R~g 205 (230)
.+++|..|.+||||++|||++||+|++|||.. +.+ +.++...|.. ..|..+.|+|.|++
T Consensus 23 ~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~--v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp TEEEEEEECSSSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 46889999999999999999999999999999 755 9999999887 47889999999965
No 191
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.44 E-value=2.4e-08 Score=92.72 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 212 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l 212 (230)
+++|..|.++|||+++||++||+|++|||.+ +.+++++..++....+ .+.|+|.|+|+.+.+.+
T Consensus 384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~--v~~~~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l 447 (448)
T 1ky9_A 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQA--VKNIAELRKVLDSKPS-VLALNIQRGDSTIYLLM 447 (448)
T ss_dssp -------------------------------------------------------------------
T ss_pred eEEEEEecCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence 4678999999999999999999999999999 9999999998886555 88999999998776654
No 192
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.42 E-value=1.1e-06 Score=66.97 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=48.8
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhC-CCCeEEEEEEECCEEE
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGGLI 208 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~-~g~~v~l~V~R~g~~~ 208 (230)
..|..|.+ |++.|||++||+|++|||.+ +. ++.++...|+.. .|..+.|+|.|++...
T Consensus 36 ~~V~~I~~--~~~~aGL~~GD~Il~VNG~~--v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~ 96 (113)
T 3soe_A 36 QKVKMILD--SQWCQGLQKGDIIKEIYHQN--VQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS 96 (113)
T ss_dssp EEEEEESC--GGGSTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred cEEEEecC--hHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence 45777776 68999999999999999999 65 678999999875 5889999999998643
No 193
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=97.79 E-value=2.8e-08 Score=75.35 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=43.8
Q ss_pred ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEE
Q 026990 146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIM 202 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~ 202 (230)
.++|..|.++|||++ |||++||+|++|||.+ + .++.++...++.. +..+.|+|.
T Consensus 54 gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~--v~~~~~~~~~~~l~~~-~~~v~l~V~ 110 (112)
T 2lob_A 54 PILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQQ-RGEIEFEVV 110 (112)
Confidence 468999999999999 9999999999999999 6 5577877777643 334666654
No 194
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.40 E-value=4.1e-07 Score=79.02 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=50.2
Q ss_pred ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990 146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.++|..|.++|||++ +||++||+|++|||++ +.+ +.++..+++.. +..+.|+|.|.++
T Consensus 104 gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~--v~~~t~~e~v~~l~~~-g~~V~L~V~R~~~ 164 (263)
T 1z87_A 104 PILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKKT-GKEVVLEVKYMKE 164 (263)
T ss_dssp EEEEEECCTTSHHHHCTTCCSSCEEEEESSCB--CTTSCHHHHHHHHHHC-CSCCCEEEECCSS
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCcCHHHHHHHHhcC-CCeEEEEEEeCcc
Confidence 478999999999999 7999999999999999 654 78888888775 6789999999754
No 195
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.27 E-value=1e-07 Score=76.37 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 214 (230)
Q Consensus 148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p 214 (230)
+|..|.++|||+++||++||+|++|||.+ +.++. ++.+.+.+.|+|+.+.+.++|
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~--v~~~~----------~~~v~~~v~r~g~~~~l~v~~ 164 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQN--VIGLK----------DSQIADILSTSGTVVTITIMP 164 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEE--CTTCC----------HHHHHHHHHHSCSEEEEEEEE
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEE--CCCCC----------hHHHHHHHhhCCCEEEEEEEE
Confidence 78999999999999999999999999999 76652 122333344555555555554
No 196
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.24 E-value=2.4e-06 Score=83.54 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=49.6
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 206 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~ 206 (230)
.+++|..|.+||||++|| |++||+|++|||.. +.++ .++...+.. .|..+.|+|.|++.
T Consensus 89 ~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 150 (721)
T 2xkx_A 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEALKE-AGSIVRLYVMRRKP 150 (721)
T ss_pred CCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-cccccceEEEeccc
Confidence 457899999999999999 99999999999999 6655 566666654 57789999999874
No 197
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.22 E-value=1.9e-06 Score=86.20 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred CceEEEEecCC--------ChhhhcC--CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC-EEEEEEEE
Q 026990 145 PFAVIDEITDA--------SPAAEDG--LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLAVT 213 (230)
Q Consensus 145 p~~~V~~V~~~--------SPA~~AG--L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g-~~~~l~l~ 213 (230)
..++|..|.++ |||++|| |+ ||+|++|||++ +..+.++...+....|+.+.|+|.|++ +.++++++
T Consensus 748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~--~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~~ 824 (1045)
T 1k32_A 748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGET--VGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMID 824 (1045)
T ss_dssp TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEE--CBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEE--ccchhhHHHhhcCCCCCEEEEEEECCCCceEEEEEE
Confidence 45788999988 9999999 99 99999999999 777778888888888999999999987 56778887
Q ss_pred e
Q 026990 214 P 214 (230)
Q Consensus 214 p 214 (230)
|
T Consensus 825 ~ 825 (1045)
T 1k32_A 825 I 825 (1045)
T ss_dssp C
T ss_pred E
Confidence 6
No 198
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.07 E-value=2.5e-05 Score=57.66 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=48.0
Q ss_pred ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEE
Q 026990 146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMR 203 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R 203 (230)
..+|..+.++|||++.| |++||.|++|||+...-.+..++...|++. .|.++.+++.+
T Consensus 29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 35799999999999987 899999999999993335678999999874 46778877765
No 199
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.00 E-value=1.3e-05 Score=78.39 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=50.5
Q ss_pred CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990 145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 205 (230)
Q Consensus 145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g 205 (230)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..+++.. +..+.+.|.|+.
T Consensus 331 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~e~~~~l~~~-~~~v~L~v~r~~ 391 (721)
T 2xkx_A 331 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNA-GQTVTIIAQYKP 391 (721)
T ss_pred CCeEEEEeCCCChHHhcCCCccCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence 357899999999999999 99999999999999 655 89999988764 677899998864
No 200
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.54 E-value=1.2e-05 Score=73.16 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=0.0
Q ss_pred eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEEC
Q 026990 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ 204 (230)
Q Consensus 147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~ 204 (230)
.+|..|.++|||+++||++||+|++|||.+ +. +++++...++. .+..+.++|.+.
T Consensus 317 g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~--v~~~s~~~~~~~l~~-~~~~v~L~V~p~ 373 (388)
T 3suz_A 317 GIICSLMRGGIAERGGVRVGHRIIEINGQS--VVATAHEKIVQALSN-SVGEIHMKTMPA 373 (388)
T ss_dssp ------------------------------------------------------------
T ss_pred CEEEEeecCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence 368899999999999999999999999999 64 56777777765 345667766543
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00018 Score=68.26 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=53.2
Q ss_pred ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 026990 146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL 210 (230)
Q Consensus 146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l 210 (230)
.++|..|.++++|..+|+++||+|++|||++ +.++.+|.+++....++.+.+.+. ++..+.+
T Consensus 416 gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~--V~s~~~l~~~l~~~k~~~l~~~~~-~~~~ivL 477 (539)
T 4fln_A 416 IVILSQVLANEVNIGYEDMNNQQVLKFNGIP--IRNIHHLAHLIDMCKDKYLVFEFE-DNYVAVL 477 (539)
T ss_dssp CEEEEEECCCGGGTTCSSCCSEEEEEETTEE--CCSHHHHHHHHHTCCSSEEEEEET-TSCEEEE
T ss_pred EEEEEEecCCchhhhcCCCCCCEEEeECCEE--cCCHHHHHHHHHHcCCCeEEEEEC-CCEEEEE
Confidence 5789999999999999999999999999999 999999999999888877777653 4554433
No 202
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.99 E-value=0.34 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++-+++.+|+.+|+++|+|...|-+.|.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 357789999999999999999999999953
No 203
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.45 E-value=0.4 Score=27.98 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
+++-+++.+|+.++.++|.|...|.+.|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 357789999999999999999999999853
No 204
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.99 E-value=0.5 Score=27.50 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
++-+++.+|+.+|.++|.|...|-+.|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 5678999999999999999999999985
No 205
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=89.25 E-value=0.84 Score=26.73 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++-+++.+|+.++.+||.|+..|.+.|..
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 357789999999999999999999999853
No 206
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.93 E-value=0.9 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
++-+++.+|+.+|.++|.|...|-+.|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5678999999999999999999999985
No 207
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=88.77 E-value=0.84 Score=26.75 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
.++-+++.+|+.++.+||.|...|-+.|.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 35778999999999999999999999884
No 208
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=86.09 E-value=1.7 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
++-+++.+|..+|.++|.|+..|-.+|.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999884
No 209
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.15 E-value=2.2 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++.+++.+|..++.++|.|...|-..|.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 367889999999999999999999998854
No 210
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=83.75 E-value=2.4 Score=24.78 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
.++-+++.+|+.++..+|.|+..+..+|-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 35778999999999999999999999883
No 211
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.64 E-value=2.5 Score=24.71 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
.++-+++.+|..+|.++|.|...|.+.|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999884
No 212
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=83.36 E-value=2.1 Score=25.32 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++-+++.+|..+|.++|.|...|-..|.+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 357789999999999999999999998864
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=75.81 E-value=18 Score=25.53 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
+.+..++..|..++++++++|..+.+-|.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56888999999999999999999998885
No 214
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=62.76 E-value=11 Score=24.54 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026990 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGP 37 (230)
Q Consensus 3 ~~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v 37 (230)
+-++-.++.+|...=.+.|.||..|...|+. ||+
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq-Hgl 53 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ-HGL 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 3456678999999999999999999999987 764
No 215
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=57.82 E-value=16 Score=23.06 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNG 36 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~ 36 (230)
..+-.++.+|...=++.|.||..|..+|.+ ||
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~LLkq-Hg 45 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNKLLKQ-NG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHH-cC
Confidence 345568889999999999999999999987 65
No 216
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.40 E-value=63 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
-++.+.+..|...|+.+|.++..|-.-|.+
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999998865
No 217
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=53.33 E-value=24 Score=19.66 Aligned_cols=27 Identities=44% Similarity=0.517 Sum_probs=20.5
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026990 62 ERRRLAELRNDHKEITEKINENIQLLH 88 (230)
Q Consensus 62 ~R~~i~~L~ND~k~v~~~ie~~L~~~h 88 (230)
.|.|+...||-.|+-.++|-+.++.+.
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888888888888877776653
No 218
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=53.01 E-value=62 Score=25.00 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQ 85 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~ 85 (230)
+...-..|.++|.+|..++.....-+.. .... || ...|..+....+..-..++.-.+..+.+|+.+|.
T Consensus 37 l~~fr~~L~~~k~eL~~~l~~~~~~~~~-~~~~----------~~-D~~D~As~~~e~~l~~~~~~re~~~L~~i~~Al~ 104 (151)
T 1tjl_A 37 LAHFRRILEAWRNQLRDEVDRTVTHMQD-EAAN----------FP-DPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLK 104 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHS----------CC-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc----------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456777888888888777655532 1111 22 3458887766666555666667788899999998
Q ss_pred HHhh
Q 026990 86 LLHS 89 (230)
Q Consensus 86 ~~h~ 89 (230)
.+..
T Consensus 105 ri~~ 108 (151)
T 1tjl_A 105 KVED 108 (151)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8765
No 219
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=50.35 E-value=30 Score=22.79 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=32.2
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 4 TNLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 4 ~~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
.++++ ...+|.++=.++..||-.|---... | .+..| ..||..|+.|+++.+
T Consensus 4 ~elr~~s~~EL~~~l~elk~Elf~LR~q~at--g-ql~n~--------------~~ir~vRr~IARi~T 55 (63)
T 3r8s_Y 4 KELREKSVEELNTELLNLLREQFNLRMQAAS--G-QLQQS--------------HLLKQVRRDVARVKT 55 (63)
T ss_dssp GGTTSCHHHHHHHHHHHHTHHHHHHHHHHHT--T-CCSCG--------------GGTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh--C-CCcCc--------------HHHHHHHHHHHHHHH
Confidence 34444 4566666666666666665544422 2 23334 789999999999875
No 220
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=44.27 E-value=49 Score=22.36 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhch
Q 026990 57 HLVRSERRRLAELRND 72 (230)
Q Consensus 57 ~~vR~~R~~i~~L~ND 72 (230)
..||..|+.|+++.+=
T Consensus 48 ~~ir~vRr~IARi~Tv 63 (72)
T 3v2d_2 48 HKIRDLKRQIARLLTV 63 (72)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999998763
No 221
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=43.35 E-value=72 Score=30.24 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCCCCCEEEEECCee
Q 026990 162 GLQLGDQVLKFGTVE 176 (230)
Q Consensus 162 GL~~GD~Iv~Ing~~ 176 (230)
++..||.|++|||.+
T Consensus 109 ~I~vGdEIlsING~p 123 (583)
T 3dor_A 109 EIRVGDELLEVDGAP 123 (583)
T ss_dssp SSCTTCEEEEETTEE
T ss_pred CCCCCCEEEEECCcc
Confidence 799999999999998
No 222
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.14 E-value=77 Score=21.35 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=35.3
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHH
Q 026990 3 GTNLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHK 74 (230)
Q Consensus 3 ~~~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k 74 (230)
..++++ ...+|.++=.++..||-.|-=-... |-.+..| ..||..|+.|+++.+=+.
T Consensus 3 ~~elr~~s~~EL~~~L~elk~ELf~LR~q~at--gq~l~n~--------------~~ir~vRr~IARi~Tvl~ 59 (72)
T 3j21_W 3 PSEIREMSIEEIDAKIRELRLQLAKERGLLTM--GTSLENP--------------MVIRNLRRDIARLLTIKK 59 (72)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--CCSSCCS--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCc--------------HHHHHHHHHHHHHHHHHH
Confidence 344555 4566666666666666665544422 2224444 789999999999987443
No 223
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=39.27 E-value=1.1e+02 Score=22.10 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHH
Q 026990 56 IHLVRSERRRLAELRNDHKEITEKI 80 (230)
Q Consensus 56 v~~vR~~R~~i~~L~ND~k~v~~~i 80 (230)
+.+||-||..+..||-+|+.=+.++
T Consensus 71 L~qi~eAR~ALdaLR~eH~~Klrr~ 95 (98)
T 3f1i_H 71 LAQIRDARGALSALREEHREKLRRA 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999998765543
No 224
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.12 E-value=83 Score=22.36 Aligned_cols=75 Identities=8% Similarity=0.100 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
+++.++.+|...+..++.++..+...|.--...|-.=|+-...==| +-....|...+.++..|++.+..+..+++
T Consensus 14 ~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~--~~~~~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 14 TIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTD--EHREELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888889999988888877665421112223332110001 11112345555556666555555554444
No 225
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=37.63 E-value=91 Score=20.89 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=29.6
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 5 NLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 5 ~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
++++ ...+|.++=.++..||-.|-=-. + .|--+..| ..||..|+.|+++.+
T Consensus 8 elr~~s~~EL~~~l~elk~ELf~LR~q~-a-tggql~n~--------------~~ir~vRr~IARi~T 59 (71)
T 1vq8_V 8 EIRDMTPAEREAELDDLKTELLNARAVQ-A-AGGAPENP--------------GRIKELRKAIARIKT 59 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHH-H-TTCCCCCH--------------HHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH-H-hcCCccCh--------------HHHHHHHHHHHHHHH
Confidence 3444 44555555556666655554222 2 11123333 789999999999876
No 226
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.26 E-value=66 Score=22.46 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 6 LKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 6 ~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
.-+....|..+|.++|.+|..+.+.|.
T Consensus 61 aEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 61 LEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888999999999999988874
No 227
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.82 E-value=79 Score=20.33 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++++||.-|-.+|.||...-..|..
T Consensus 28 ~eYq~LlniK~~Le~EIatYRkLLEg 53 (59)
T 1gk6_A 28 KLVGDLLNVKMALDIEIATYRKLLEG 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 47789999999999999999888864
No 228
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.64 E-value=93 Score=19.67 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++.+..+|..+-..+.++++.+...|.+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888888888888888888864
No 229
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.74 E-value=71 Score=20.43 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
..+.+|..+-..||.+|..|.+.|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999998875
No 230
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.33 E-value=83 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 7 KAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 7 ~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
..++++||.-|-.+|.||...-..|..
T Consensus 32 l~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 32 LDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999999999999964
No 231
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=29.78 E-value=91 Score=23.28 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
...+|.++=.++..||-.|-=-... + +| ...||..|..|+++.+
T Consensus 13 s~eEL~~~L~eLK~ELf~LRfq~at-g------ql------------~~~Ir~vRR~IARi~T 56 (120)
T 3u5e_h 13 SKEQLASQLVDLKKELAELKVQKLS-R------PS------------LPKIKTVRKSIACVLT 56 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTT-S------SC------------CTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-C------Cc------------chhHHHHHHHHHHHHH
Confidence 3455666555666666555443322 2 22 2789999999999877
No 232
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.68 E-value=78 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026990 15 EKRSALEADMNAIIDRL 31 (230)
Q Consensus 15 ~~k~~iE~el~~l~~~L 31 (230)
..|..||.||+.|..-|
T Consensus 47 ~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777777766655
No 233
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.14 E-value=80 Score=22.73 Aligned_cols=57 Identities=11% Similarity=0.257 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENI 84 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L 84 (230)
.+|+++.+|..+...++.++..|.+.|.. =|..|..+ .-..+.|-.++|..=
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~e-------------------------E~~~R~~a---E~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAK-------------------------ENELRTKA---EEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------------HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 57899999999999999999999888854 24444433 344566677777776
Q ss_pred HHHhh
Q 026990 85 QLLHS 89 (230)
Q Consensus 85 ~~~h~ 89 (230)
..||.
T Consensus 61 asLFe 65 (97)
T 2eqb_B 61 ASLFD 65 (97)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
No 234
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=26.79 E-value=80 Score=17.93 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026990 9 EIMSLMEKRSALEADMNAIIDRL 31 (230)
Q Consensus 9 ~~~~L~~~k~~iE~el~~l~~~L 31 (230)
++..+-++...||.|++++.+.+
T Consensus 3 kiaaikeeqaaieeeiqaikeei 25 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEI 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667778888888876654
No 235
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.93 E-value=86 Score=20.49 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
++..++.+|..+...|++++..|-..|.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788888888888888888877663
No 236
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=25.90 E-value=1.4e+02 Score=19.54 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=31.8
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 026990 3 GTNLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRN 71 (230)
Q Consensus 3 ~~~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~N 71 (230)
..++++ ...+|.++=.++..||-.|---... | .+..| ..||..|+.|+++.+
T Consensus 3 ~~elr~~s~~EL~~~l~elk~ELf~LR~q~at--g-ql~n~--------------~~ir~vRr~IARi~T 55 (66)
T 1r73_A 3 ASELRNYTDEELKNLLEEKKRQLMELRFQLAM--G-QLKNT--------------SLIKLTKRDIARIKT 55 (66)
T ss_dssp CSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--T-CCCCH--------------HHHHHHHHHHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHc--c-CccCc--------------HHHHHHHHHHHHHHH
Confidence 345555 5566666666666676665422211 1 11222 789999999999876
No 237
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=23.61 E-value=27 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHH
Q 026990 35 NGPGLSGNLVDSEGFPRTDIDIHL 58 (230)
Q Consensus 35 ~~v~m~~~Lvd~eGFPR~DiDv~~ 58 (230)
..+.+-||....+--|.+|||+.-
T Consensus 26 ~~v~LFGS~arG~~~~~SDiDl~V 49 (98)
T 1wot_A 26 VRVRVFGSVARGEAREDSDLDLLV 49 (98)
T ss_dssp SSCEECSHHHHTCCCTTCCCEEEE
T ss_pred cEEEEEccccCCCCCCCCCEEEEE
Confidence 468889999998888999999863
No 238
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.01 E-value=93 Score=23.71 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.++.+.+.+|.++.+++|+|++.+..-|..
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999998876543
No 239
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.87 E-value=1.2e+02 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990 8 AEIMSLMEKRSALEADMNAIIDRLS 32 (230)
Q Consensus 8 ~~~~~L~~~k~~iE~el~~l~~~L~ 32 (230)
.++.+||.-|-.+|.||...-..|.
T Consensus 56 ~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 56 DEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4778889999999999988877774
No 240
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.74 E-value=1.4e+02 Score=23.63 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhc
Q 026990 56 IHLVRSERRRLAELRN 71 (230)
Q Consensus 56 v~~vR~~R~~i~~L~N 71 (230)
...||..|+.|+++.+
T Consensus 104 psrIR~VRRdIARIkT 119 (173)
T 3bbo_Z 104 SSDFRRMKKQVARMLT 119 (173)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3889999999999877
No 241
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.70 E-value=40 Score=19.82 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026990 4 TNLKAEIMSLMEKRSALEADMNAIIDRL 31 (230)
Q Consensus 4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L 31 (230)
..++.+++.|..+.+..|.++..+...|
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999887666
No 242
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=21.98 E-value=72 Score=22.32 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 026990 59 VRSERRRLAELRNDHKEITEKINENIQL 86 (230)
Q Consensus 59 vR~~R~~i~~L~ND~k~v~~~ie~~L~~ 86 (230)
-|....|+-.|-.||+.+.++|.+.|..
T Consensus 3 ~k~~~aR~k~LP~dY~~ay~~i~~Yl~~ 30 (85)
T 2o3l_A 3 YKMMMARVAALPEDYQFVFKKIQNYMWN 30 (85)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 4777899999999999999999999974
No 243
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.78 E-value=1e+02 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026990 5 NLKAEIMSLMEKRSALEADMNAII 28 (230)
Q Consensus 5 ~~~~~~~~L~~~k~~iE~el~~l~ 28 (230)
++-++|.+|+.+|..=|.+|.+|.
T Consensus 56 dLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 56 DLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455699999999999999997654
No 244
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=21.76 E-value=43 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=15.1
Q ss_pred hhchHHHHHHHHHHHHHHHhh
Q 026990 69 LRNDHKEITEKINENIQLLHS 89 (230)
Q Consensus 69 L~ND~k~v~~~ie~~L~~~h~ 89 (230)
|.+-.+..+.+|+.+|..+..
T Consensus 58 l~~r~r~~L~~i~~Al~ri~~ 78 (112)
T 2kq9_A 58 LGQVGQDELRAIDAALARIAS 78 (112)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhC
Confidence 444456778889988888765
No 245
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=21.42 E-value=1.3e+02 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=41.7
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CC-CCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 026990 9 EIMSLMEKR-----SALEADMNAIIDRLSQSNGPGLSGNLVDSE-GF-PRTDIDIHLVRSERRRLAELRNDHKEITEKIN 81 (230)
Q Consensus 9 ~~~~L~~~k-----~~iE~el~~l~~~L~~~~~v~m~~~Lvd~e-GF-PR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie 81 (230)
.|..|.++| ++|.++++.....|.. .. +.+ || |-.++.-.+.+.....|.-|.-.+.+|...+.
T Consensus 203 ~L~~ll~~~d~~L~~~i~~~~~~~~~~l~~-~~--------~~~~~f~~yd~l~~~~~~~l~~~i~aL~e~Ls~l~~~~~ 273 (283)
T 3at7_A 203 LFRPLVVKDNRAFADKVDANFDTVFKTLAK-YR--------TADGGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLG 273 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TB--------CTTSCBCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHH-hh--------ccccCCCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355565555 5678888888888865 21 123 78 54444444556667777777777766666555
Q ss_pred HHHH
Q 026990 82 ENIQ 85 (230)
Q Consensus 82 ~~L~ 85 (230)
..|.
T Consensus 274 ~~~~ 277 (283)
T 3at7_A 274 LDLE 277 (283)
T ss_dssp TTC-
T ss_pred cchh
Confidence 4444
No 246
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=20.77 E-value=1.3e+02 Score=25.44 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 45 DSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 45 d~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
++-|.+-++.|+..|..+-.+++.|..-.+.|.+.|+..+..+
T Consensus 86 ~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~i 128 (255)
T 3icx_A 86 KSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 128 (255)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4579999999999999999999999999999999999988765
No 247
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=20.66 E-value=63 Score=18.76 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 026990 12 SLMEKRSALEADMNAIIDRLSQ 33 (230)
Q Consensus 12 ~L~~~k~~iE~el~~l~~~L~~ 33 (230)
.|-+.-+.+|.+|+-|+.+|.-
T Consensus 11 algqdtekmeeqldllsaildp 32 (40)
T 4h62_K 11 ALGQDTEKMEEQLDLLSAILDP 32 (40)
T ss_pred hhcccHHHHHHHHHHHHHHcCc
Confidence 4555567899999999999964
No 248
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=20.42 E-value=1.3e+02 Score=25.43 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026990 45 DSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLL 87 (230)
Q Consensus 45 d~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie~~L~~~ 87 (230)
++-|.+.++.|+..|..+=.+++.|..-.+.|.+-|+..|..+
T Consensus 100 ~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~i 142 (260)
T 2ozb_B 100 TTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFI 142 (260)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3569999999999999999999999999999988888888764
No 249
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=20.33 E-value=1.1e+02 Score=22.87 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=37.0
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHHH-
Q 026990 4 TNLKA-EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKIN- 81 (230)
Q Consensus 4 ~~~~~-~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~ie- 81 (230)
.++++ ...+|.++=.++..||-.|---... |--++.| ..||..|+.|+++.+ |+.+-+
T Consensus 8 ~ELR~~s~eEL~~~L~eLK~ELf~LRfq~at--ggqlen~--------------~rIr~vRRdIARi~T----vl~er~~ 67 (124)
T 4a17_U 8 FKLRTQTEEQLVGELGKLQTELSQLRIAKIA--GGTANKL--------------GRIGIVRKAIAKYLT----IINEKRR 67 (124)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHH--------------HHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCc--------------HHHHHHHHHHHHHHH----HHHHHHH
Confidence 34444 3555666656666666555433322 1112223 789999999999977 344332
Q ss_pred HHHHHHhh
Q 026990 82 ENIQLLHS 89 (230)
Q Consensus 82 ~~L~~~h~ 89 (230)
+.|-.++.
T Consensus 68 ~~lr~~yk 75 (124)
T 4a17_U 68 QAVKDQFK 75 (124)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 44555554
No 250
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=20.28 E-value=31 Score=27.46 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 026990 15 EKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPR 51 (230)
Q Consensus 15 ~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR 51 (230)
.-|+.||..|..|-+.|.. .|+.+..--|..++|..
T Consensus 122 ~vReaLe~~lp~LRe~La~-qGi~L~~v~Vs~~~~sg 157 (169)
T 2rrl_A 122 HVRAALEAALPMLRTQLAE-SGIQLGQSSISSESFAG 157 (169)
T ss_dssp HHHHHHHHTHHHHHHHHHT-TTCEEEEEEEESSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCeeeEEEecCCccc
Confidence 4589999999999999987 79988888888888864
Done!