Query 026992
Match_columns 229
No_of_seqs 235 out of 1345
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0656 G1/S-specific cyclin D 100.0 1.5E-41 3.3E-46 300.5 19.6 205 13-224 10-218 (335)
2 KOG0655 G1/S-specific cyclin E 100.0 3.6E-31 7.8E-36 230.5 11.7 151 48-206 111-263 (408)
3 KOG0653 Cyclin B and related k 100.0 4.2E-30 9.2E-35 235.2 16.4 167 48-223 125-293 (391)
4 COG5024 Cyclin [Cell division 100.0 1.9E-28 4.2E-33 224.2 9.0 171 44-222 175-346 (440)
5 PF00134 Cyclin_N: Cyclin, N-t 99.9 3E-26 6.6E-31 177.3 11.6 126 52-185 1-127 (127)
6 KOG0654 G2/Mitotic-specific cy 99.7 1.3E-18 2.8E-23 155.9 3.7 162 48-216 101-265 (359)
7 TIGR00569 ccl1 cyclin ccl1. Un 99.6 1.9E-15 4.2E-20 134.1 13.1 112 85-200 54-170 (305)
8 cd00043 CYCLIN Cyclin box fold 99.5 2.2E-14 4.7E-19 102.3 7.9 86 87-177 2-88 (88)
9 smart00385 CYCLIN domain prese 99.5 1E-13 2.2E-18 97.8 7.8 82 92-178 1-83 (83)
10 KOG0834 CDK9 kinase-activating 99.5 1.6E-13 3.4E-18 122.2 8.2 118 84-205 36-167 (323)
11 COG5333 CCL1 Cdk activating ki 99.3 3.7E-11 7.9E-16 105.2 10.2 118 84-205 42-166 (297)
12 KOG0835 Cyclin L [General func 99.0 7.3E-09 1.6E-13 91.3 12.7 120 83-206 19-158 (367)
13 KOG0794 CDK8 kinase-activating 98.9 1.1E-09 2.4E-14 92.3 4.5 116 85-203 39-167 (264)
14 PF08613 Cyclin: Cyclin; Inte 98.7 7.6E-08 1.6E-12 77.2 8.6 90 90-184 54-149 (149)
15 PRK00423 tfb transcription ini 98.6 9.2E-07 2E-11 79.1 13.7 113 87-205 122-235 (310)
16 KOG2496 Cdk activating kinase 98.3 1.3E-06 2.8E-11 76.6 5.6 104 92-199 61-169 (325)
17 KOG4164 Cyclin ik3-1/CABLES [C 98.2 5.5E-07 1.2E-11 81.3 2.7 99 85-187 381-482 (497)
18 COG1405 SUA7 Transcription ini 97.3 0.0075 1.6E-07 53.4 13.0 116 85-206 95-211 (285)
19 KOG1597 Transcription initiati 97.1 0.0041 8.9E-08 54.7 9.3 122 88-215 105-229 (308)
20 KOG1674 Cyclin [General functi 96.7 0.0039 8.6E-08 53.1 6.3 96 90-187 78-181 (218)
21 PF00382 TFIIB: Transcription 96.2 0.03 6.6E-07 38.8 7.1 60 94-157 1-60 (71)
22 PRK00423 tfb transcription ini 94.1 0.33 7.2E-06 43.4 8.8 87 91-183 220-307 (310)
23 KOG1598 Transcription initiati 92.7 1 2.2E-05 43.0 9.8 123 93-222 73-199 (521)
24 PF02984 Cyclin_C: Cyclin, C-t 87.8 1.4 3E-05 32.5 5.2 85 91-180 4-89 (118)
25 COG1405 SUA7 Transcription ini 87.6 1.9 4.1E-05 38.3 6.6 57 89-148 193-249 (285)
26 KOG0834 CDK9 kinase-activating 85.0 1.1 2.4E-05 40.5 3.8 91 88-181 153-246 (323)
27 KOG1675 Predicted cyclin [Gene 83.6 1.2 2.5E-05 39.9 3.3 101 96-200 199-301 (343)
28 PF02984 Cyclin_C: Cyclin, C-t 78.3 0.73 1.6E-05 34.1 0.2 33 187-219 1-33 (118)
29 KOG0835 Cyclin L [General func 47.6 89 0.0019 28.5 7.2 44 133-177 183-226 (367)
30 TIGR00569 ccl1 cyclin ccl1. Un 39.5 1.3E+02 0.0029 26.9 7.2 43 107-152 183-225 (305)
31 KOG1597 Transcription initiati 38.0 82 0.0018 28.2 5.5 54 92-148 205-258 (308)
32 cd00043 CYCLIN Cyclin box fold 35.7 55 0.0012 21.8 3.4 34 186-219 2-35 (88)
33 PF11357 Spy1: Cell cycle regu 26.2 1.4E+02 0.0029 23.5 4.4 81 100-186 24-109 (131)
34 cd04441 DEP_2_DEP6 DEP (Dishev 25.8 65 0.0014 23.3 2.4 28 88-116 36-63 (85)
35 PF13817 DDE_Tnp_IS66_C: IS66 25.3 93 0.002 19.0 2.7 20 183-202 7-26 (39)
36 PF12550 GCR1_C: Transcription 24.3 1.7E+02 0.0037 20.5 4.4 32 84-118 49-80 (81)
37 cd03197 GST_C_mPGES2 GST_C fam 22.5 1.1E+02 0.0024 24.5 3.4 40 107-146 30-69 (149)
38 PF13591 MerR_2: MerR HTH fami 22.3 1.7E+02 0.0036 20.7 4.0 30 91-120 45-74 (84)
39 cd04449 DEP_DEPDC5-like DEP (D 22.2 85 0.0018 22.2 2.4 30 87-116 32-61 (83)
40 PF05164 ZapA: Cell division p 21.5 2E+02 0.0043 20.0 4.3 44 105-148 20-63 (89)
41 cd04443 DEP_GPR155 DEP (Dishev 20.9 91 0.002 22.3 2.4 29 87-116 33-61 (83)
42 cd04439 DEP_1_P-Rex DEP (Dishe 20.7 81 0.0018 22.4 2.0 30 87-117 31-60 (81)
43 cd04442 DEP_1_DEP6 DEP (Dishev 20.5 88 0.0019 22.4 2.2 11 88-98 32-42 (82)
44 TIGR00873 gnd 6-phosphoglucona 20.1 1.9E+02 0.0042 27.4 5.0 37 85-121 395-431 (467)
No 1
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-41 Score=300.50 Aligned_cols=205 Identities=34% Similarity=0.567 Sum_probs=168.3
Q ss_pred ccccccCCccCccC-CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHH
Q 026992 13 SLMCQEDESCLSQE-SGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAI 91 (229)
Q Consensus 13 ~l~C~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v 91 (229)
.|+|+|.+...+.+ ...++.... ..+..-.| .-+++|.+++|+++|..+.|+.++.. .....+++.+|..++
T Consensus 10 ~l~c~E~~~~~~~~~~~~D~~~~~-~~~~~~~~--~~~~e~~i~~ll~kEe~~~p~~~~~~----~~~~~~~~~~R~~A~ 82 (335)
T KOG0656|consen 10 QLLCHEESTSDEQDRADNDESSTE-SSIPQLGF--LLWDERVLANLLEKEEQHNPSLDYFL----CVQKLILSSMRKQAL 82 (335)
T ss_pred ccccCCCCcccccccccCCccccc-cccccccc--ccccHHHHHHHHHHHHHhCCCCchhh----hcccccccHHHHHHH
Confidence 58999976544321 222221111 11121112 34689999999999999999876322 233457888999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccceec--ccCCCcHHHH
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQV--DDFDFENKVI 169 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~~--~~~~~t~~~i 169 (229)
+||++||++++++++|++|||||||||++..++++.++|++||+|+|||+||||+||+.+|.+.++++ .++.|.++.|
T Consensus 83 ~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI 162 (335)
T KOG0656|consen 83 DWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTI 162 (335)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999983 5699999999
Q ss_pred HHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHhhhh
Q 026992 170 QRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP-KELVSRAVELIMTITKGN 224 (229)
Q Consensus 170 ~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~-~~i~~~~~~~~l~~~~~~ 224 (229)
++||+.||++|+|+|+.+||++|+++|+++++..... ..+.+++..++++.++++
T Consensus 163 ~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~ 218 (335)
T KOG0656|consen 163 QRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHASLFLLSVITDI 218 (335)
T ss_pred HHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999987555 456677788888877665
No 2
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.6e-31 Score=230.53 Aligned_cols=151 Identities=25% Similarity=0.427 Sum_probs=134.7
Q ss_pred CchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc-CccCC
Q 026992 48 NGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSK-RSIDD 126 (229)
Q Consensus 48 ~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~-~~i~~ 126 (229)
.-..|.+..|+.||..|....+++. +++++.++||++++|||++||..|++.+||+|||+-||||||.. ..+.+
T Consensus 111 gn~~eVW~lM~kkee~~l~~~~~l~-----qHpdlqp~mRaILlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~~~v~k 185 (408)
T KOG0655|consen 111 GNSKEVWLLMLKKEERYLRDKHFLE-----QHPDLQPQMRAILLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQVEVSK 185 (408)
T ss_pred cCHHHHHHHHHccchhhhhhhHHHh-----hCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999998766655443 34567889999999999999999999999999999999999965 56666
Q ss_pred cchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 127 GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 127 ~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
.+ +||+|++|||||||+||+++|++.+|. ++++.+|.++|++||+.||+.|+|++.+.|...||..|+........
T Consensus 186 t~---lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~ 262 (408)
T KOG0655|consen 186 TN---LQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDILTMELIILKALKWELSPITIISWLNVYLQVDALNDA 262 (408)
T ss_pred hh---HHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHhcCCC
Confidence 65 599999999999999999999999999 99999999999999999999999999999999999999987766554
Q ss_pred c
Q 026992 206 P 206 (229)
Q Consensus 206 ~ 206 (229)
+
T Consensus 263 ~ 263 (408)
T KOG0655|consen 263 P 263 (408)
T ss_pred C
Confidence 4
No 3
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=4.2e-30 Score=235.24 Aligned_cols=167 Identities=26% Similarity=0.407 Sum_probs=149.0
Q ss_pred CchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCc
Q 026992 48 NGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDG 127 (229)
Q Consensus 48 ~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~ 127 (229)
+|.++++..+..+|..+.|...+ ....+++..||.++|||+++||..|++.+||+++||+++||||++..++..
T Consensus 125 ey~~di~~~l~~~e~~~~p~~~~------~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v~~~ 198 (391)
T KOG0653|consen 125 EYVQDIFEYLRQLELEFLPLSYD------ISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKVPLK 198 (391)
T ss_pred HHHHHHHHHHHHHHHhhCchhhh------cccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcccHH
Confidence 68999999999999766666543 234567889999999999999999999999999999999999999889888
Q ss_pred chhHHHHHHHHHHH-HHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 128 KLWAIRLLSVACLS-LAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 128 ~~~~lqLla~acL~-lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
+. ||+|++||+ ||+|+||..+|.+.+++ ++++.|++++|++||+.||++|+|++..|||+.||++|++.......
T Consensus 199 ~l---qLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ka~~~d~~ 275 (391)
T KOG0653|consen 199 KL---QLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRFLKAADYDIK 275 (391)
T ss_pred Hh---hHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHHHHhhhcchh
Confidence 76 999999966 99999999999999999 99999999999999999999999999999999999999999886666
Q ss_pred cHHHHHHHHHHHHHHhhh
Q 026992 206 PKELVSRAVELIMTITKG 223 (229)
Q Consensus 206 ~~~i~~~~~~~~l~~~~~ 223 (229)
...+.+..+++.++=.+-
T Consensus 276 ~~~~~k~~~El~l~d~~~ 293 (391)
T KOG0653|consen 276 TRTLVKYLLELSLCDYSM 293 (391)
T ss_pred HHHHHHHHHHHHHhhhHH
Confidence 677788888877665543
No 4
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.9e-28 Score=224.20 Aligned_cols=171 Identities=21% Similarity=0.280 Sum_probs=149.9
Q ss_pred CCCCCchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCc
Q 026992 44 FVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRS 123 (229)
Q Consensus 44 ~~~~~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~ 123 (229)
+...||+.+++..|+++|..+.|.++|+..++.. .-.||..+++|+.++|..|++.++|+++|++++||||++..
T Consensus 175 ~mv~Ey~~~Ife~l~k~e~~~lp~~~yl~kq~~~-----~~~mR~~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~ 249 (440)
T COG5024 175 LMVPEYASDIFEYLLKLELIDLPNPNYLIKQSLY-----EWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRV 249 (440)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCcHHHHhhcchh-----HHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhccCc
Confidence 3346899999999999999999999986665543 33899999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcC
Q 026992 124 IDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG 202 (229)
Q Consensus 124 i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~ 202 (229)
+.-++. ||+|++|||||||+||.+.|.+.+++ ++++.|+.++|.++|+.+|.+|+|++..|+|..|++++.+.-.-
T Consensus 250 v~l~k~---QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~i~~aE~~ml~~l~f~is~P~P~sFLRriSka~dy 326 (440)
T COG5024 250 VSLEKY---QLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKASDY 326 (440)
T ss_pred ccHHHH---HHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHHHHHHHHHHhhhcccccCCCChHHHHHHHHhhccc
Confidence 999987 99999999999999999999999999 99999999999999999999999999999999999888877655
Q ss_pred CCCcHHHHHHHHHHHHHHhh
Q 026992 203 ECRPKELVSRAVELIMTITK 222 (229)
Q Consensus 203 ~~~~~~i~~~~~~~~l~~~~ 222 (229)
+...+.......++.....+
T Consensus 327 d~~srt~~k~~~e~s~~~~~ 346 (440)
T COG5024 327 DIFSRTPAKFSSEISPVDYK 346 (440)
T ss_pred chhhhhhHhhhCCchHhhhh
Confidence 54445555555555444443
No 5
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.94 E-value=3e-26 Score=177.28 Aligned_cols=126 Identities=31% Similarity=0.481 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhH
Q 026992 52 EFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWA 131 (229)
Q Consensus 52 e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~ 131 (229)
|+++.|+++|.++.|++.|+..++ +++...|..+++||.+++..+++++.|+++|+.|||||+.+..+.+.+.
T Consensus 1 ~i~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~~~~~~~-- 73 (127)
T PF00134_consen 1 DIFRYLLEKELKYKPNPDYLEQQP-----EITPEMRQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRPVNRSKL-- 73 (127)
T ss_dssp HHHHHHHHHHHHTTCCTTHGTGTS-----SHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS-TTCCGH--
T ss_pred CHHHHHHHHHHHHCcCccccccCh-----hcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcccccchh--
Confidence 689999999999988877665443 5788999999999999999999999999999999999999998888876
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCccc
Q 026992 132 IRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMG 185 (229)
Q Consensus 132 lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~ 185 (229)
+++|+||++||+|++|..+|.+.++. ++++.|+.++|.+||+.||++|+|+++
T Consensus 74 -~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 74 -QLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKDILEMEREILSALNFDLN 127 (127)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHHHHHHHHHHHHHTTT---
T ss_pred -hhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCCcC
Confidence 99999999999999999999999998 788999999999999999999999985
No 6
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.3e-18 Score=155.92 Aligned_cols=162 Identities=24% Similarity=0.360 Sum_probs=142.5
Q ss_pred CchHHHHHHHHHHHhc-cCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCC
Q 026992 48 NGDEEFIEKLVDKETD-FGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDD 126 (229)
Q Consensus 48 ~~~~e~l~~l~~~E~~-~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~ 126 (229)
.+..++.++++.-|.. .+|.++++.. ...++++.||.++|+|.+++.+.+++..+++|+++++.|||+....+.+
T Consensus 101 ~~~~~I~~~~r~~ei~~~rp~~~~~e~----vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~~~~~ 176 (359)
T KOG0654|consen 101 KIAAKIYNTLRVSDIKSERPLPSKFEF----VQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYKEVNK 176 (359)
T ss_pred HHHHHHhhcccccchhhccCcccceee----eecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHHHhccCccHH
Confidence 4778888888888888 8888877654 2356889999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcC-CC
Q 026992 127 GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG-EC 204 (229)
Q Consensus 127 ~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~-~~ 204 (229)
.+. |++|.+|.+||+|+||..+|.+.+|. +.++.|+..++.+||..||+.|.|.+..||.-.|+..|++.... ..
T Consensus 177 ~k~---ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~~~~~~~~~~~~ 253 (359)
T KOG0654|consen 177 QKL---QLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLRRFLRVAQTPEL 253 (359)
T ss_pred HHH---HHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHHHHHHhhcchhH
Confidence 886 99999999999999999999999999 99999999999999999999999999999999999999776543 22
Q ss_pred CcHHHHHHHHHH
Q 026992 205 RPKELVSRAVEL 216 (229)
Q Consensus 205 ~~~~i~~~~~~~ 216 (229)
..+.++...+++
T Consensus 254 ~~e~~~~yl~el 265 (359)
T KOG0654|consen 254 QVEPLANYLTEL 265 (359)
T ss_pred HHHHHHHHHHHh
Confidence 224555666555
No 7
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=99.65 E-value=1.9e-15 Score=134.10 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-ccc
Q 026992 85 CARLDAIEWIFNKRAMFG--FQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDD 161 (229)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~--l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~ 161 (229)
..|..-...|.+++..++ +++.|+++|+.||+||+...++...++ +++|+||++||+|+||..+ ++.+++ ...
T Consensus 54 ~l~~~y~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv~~~~p---~~Ia~tclfLA~KvEE~~~-si~~fv~~~~ 129 (305)
T TIGR00569 54 DLVKYYEKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSVMEYHP---KIIMLTCVFLACKVEEFNV-SIDQFVGNLK 129 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCchhhcCH---HHHHHHHHHHHHhccccCc-CHHHHHhhcc
Confidence 678888899999999999 999999999999999999999998888 9999999999999999954 567775 222
Q ss_pred --CCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHh
Q 026992 162 --FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKL 200 (229)
Q Consensus 162 --~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l 200 (229)
.....++|++||+.||++|+|++..++|+.++..|+..+
T Consensus 130 ~~~~~~~~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl 170 (305)
T TIGR00569 130 ETPLKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDI 170 (305)
T ss_pred CCchhhHHHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHH
Confidence 234679999999999999999999999999999888644
No 8
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=99.54 E-value=2.2e-14 Score=102.27 Aligned_cols=86 Identities=34% Similarity=0.463 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCc
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFE 165 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t 165 (229)
|...++||.+++..++++++|.++|+.++|||+....+.+.++ +++|+||++||+|+++. ++...++. ++++. +
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~-~ 76 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSVLGRSP---SLVAAAALYLAAKVEEI-PPWLKDLVHVTGYA-T 76 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCCh---HHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCC-C
Confidence 6778999999999999999999999999999999988887776 99999999999999999 77788887 66543 8
Q ss_pred HHHHHHHHHHHH
Q 026992 166 NKVIQRMELLVL 177 (229)
Q Consensus 166 ~~~i~~mE~~IL 177 (229)
.++|.+||+.|+
T Consensus 77 ~~~i~~~e~~il 88 (88)
T cd00043 77 EEEILRMEKLLL 88 (88)
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 9
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=99.49 E-value=1e-13 Score=97.82 Aligned_cols=82 Identities=33% Similarity=0.422 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHH
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQ 170 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~ 170 (229)
+||.+++..+++++++.++|+.++||++....+.+.++ +++|+||+++|+|++|.. |...++. ++++ ++.++|.
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~---~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~-~~~~~i~ 75 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFLKYSP---SLIAAAALYLAAKTEEIP-PWTKELVHYTGY-FTEEEIL 75 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHhcCC-CCchhHhHhhCC-CCHHHHH
Confidence 59999999999999999999999999999777766666 999999999999999986 5566766 6665 8999999
Q ss_pred HHHHHHHH
Q 026992 171 RMELLVLS 178 (229)
Q Consensus 171 ~mE~~IL~ 178 (229)
+||+.||.
T Consensus 76 ~~~~~il~ 83 (83)
T smart00385 76 RMEKLLLE 83 (83)
T ss_pred HHHHHHhC
Confidence 99999874
No 10
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.6e-13 Score=122.22 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccC
Q 026992 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDF 162 (229)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~ 162 (229)
...|.....||.+++..+|++..|+..|+.|+.||....++..... +.+|.+|++||+|+||. +.++.|++ ++-.
T Consensus 36 ~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~---~~vA~sclfLAgKvEet-p~kl~dIi~~s~~ 111 (323)
T KOG0834|consen 36 LRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDP---YTVAASCLFLAGKVEET-PRKLEDIIKVSYR 111 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcH---HHHHHHHHHHHhhcccC-cccHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999887 99999999999999998 55567765 3221
Q ss_pred CC-------------cHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 163 DF-------------ENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 163 ~~-------------t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
.+ .++.|...|+.||++|+|++++-.|+.||-.+++.+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~ 167 (323)
T KOG0834|consen 112 YLNPKDLELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADEN 167 (323)
T ss_pred HcCcccccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhh
Confidence 11 25789999999999999999999999999999999987765
No 11
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=99.25 E-value=3.7e-11 Score=105.15 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee--c--
Q 026992 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ--V-- 159 (229)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~--~-- 159 (229)
.+.|..-..||..+|.+++++..++.+|+.+++||..+..+....+ +-++.||++||+|+||+ +-.+.-.. .
T Consensus 42 ~~l~i~~~k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~sv~e~~~---~~vv~tcv~LA~K~ed~-~~~I~i~~~~~~~ 117 (297)
T COG5333 42 LNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISL---YSVVTTCVYLACKVEDT-PRDISIESFEARD 117 (297)
T ss_pred hhHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcccccccH---HHHHHhheeeeeecccc-cchhhHHHHHhhc
Confidence 3567777899999999999999999999999999999999988876 99999999999999995 11121111 1
Q ss_pred --c-cCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 160 --D-DFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 160 --~-~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
+ ...-+++.|..+|..+|+.|+|+++++.|+.++..|+..+...+.
T Consensus 118 ~~se~~~~sr~~Il~~E~~lLEaL~fd~~V~hPy~~l~~f~~~~q~~~~ 166 (297)
T COG5333 118 LWSEEPKSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDK 166 (297)
T ss_pred cccccccccHHHHHHHHHHHHHHcccceEeccccHHHHHHHHHHHhccH
Confidence 1 245678999999999999999999999999999999988765555
No 12
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=98.99 E-value=7.3e-09 Score=91.32 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-c--
Q 026992 83 LKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-V-- 159 (229)
Q Consensus 83 ~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~-- 159 (229)
....|..-++||.+.+.-++++..+.+.+..+|-||.....+-+.+. ..+++||++||+|+||. |-.+.++. +
T Consensus 19 e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~---e~vv~ACv~LASKiEE~-Prr~rdVinVFh 94 (367)
T KOG0835|consen 19 EEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDF---EIVVMACVLLASKIEEE-PRRIRDVINVFH 94 (367)
T ss_pred HHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccH---HHHHHHHHHHHhhhccc-cccHhHHHHHHH
Confidence 34678889999999999999999999999999999999998877775 99999999999999987 33344432 1
Q ss_pred ----------------cc-CCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCc
Q 026992 160 ----------------DD-FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP 206 (229)
Q Consensus 160 ----------------~~-~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~ 206 (229)
.. ..-...++.++|+.||+.|+|.+++..|+.++-.|+.-++.++..
T Consensus 95 ~L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~ 158 (367)
T KOG0835|consen 95 YLEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNL 158 (367)
T ss_pred HHHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCch
Confidence 00 112245788999999999999999999999999999998877664
No 13
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=98.91 E-value=1.1e-09 Score=92.34 Aligned_cols=116 Identities=24% Similarity=0.377 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-----c
Q 026992 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-----V 159 (229)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-----~ 159 (229)
+.+--..+.|..++.+.++.+.++..|+.||-||+.+.++..-.+ .++|.||++||||+||..+..++-++ +
T Consensus 39 ~l~i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~k~~~p---~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L 115 (264)
T KOG0794|consen 39 KLKIFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSLKEIEP---RLLAPTCLYLACKVEECPIVHIRLLVNEAKVL 115 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCH---HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Confidence 445556677899999999999999999999999999999888887 99999999999999998422222211 1
Q ss_pred --------ccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCC
Q 026992 160 --------DDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGE 203 (229)
Q Consensus 160 --------~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~ 203 (229)
....+..+.|.+||..+|+.|+.-|-+-.|+.=|..++...+..
T Consensus 116 ~~~f~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVhHPYrsL~q~~qd~gi~ 167 (264)
T KOG0794|consen 116 KTRFSYWPEKFPYERKDILEMEFYLLEALDCYLIVHHPYRSLLQFVQDMGIN 167 (264)
T ss_pred hhhcccchhhcCCCcCcchhhhhhHHhhhceeEEEecCCccHHHHHHHhccc
Confidence 12567889999999999999999999999999898888877653
No 14
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=98.71 E-value=7.6e-08 Score=77.17 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhhh---cCc--cCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCC
Q 026992 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLS---KRS--IDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFD 163 (229)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs---~~~--i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~ 163 (229)
+.+|+.++...-+++++++.+|..|+||+.. ... +.... .+-+-++|+.+|+|+-+......+.+. +++
T Consensus 54 i~~fl~ri~~~~~~s~~~~i~aliYl~Rl~~~~~~~~~~~~~~~---~~Rl~l~alilA~K~~~D~~~~n~~~a~v~g-- 128 (149)
T PF08613_consen 54 IRDFLSRILKYTQCSPECLILALIYLDRLRQRSRKPNIPLNSSN---IHRLFLTALILASKFLDDNTYSNKSWAKVGG-- 128 (149)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH--H-TT---STTT---HHHHHHHHHHHHHHHH-SS---HHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcccccccccch---hHHHHHHHHHHHHhhcccccccHHHHHhhcC--
Confidence 7789999999999999999999999999999 333 33333 488999999999999766665566666 655
Q ss_pred CcHHHHHHHHHHHHHHcCCcc
Q 026992 164 FENKVIQRMELLVLSTLDWKM 184 (229)
Q Consensus 164 ~t~~~i~~mE~~IL~~L~w~l 184 (229)
++.+++.+||+..|..|+|+|
T Consensus 129 is~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 129 ISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp S-HHHHHHHHHHHHHHTTT--
T ss_pred CCHHHHHHHHHHHHHHCCCcC
Confidence 799999999999999999986
No 15
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=98.61 E-value=9.2e-07 Score=79.08 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCc
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFE 165 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t 165 (229)
-.....-|-.++..++++..+.-.|..++.++.....+...+. ..+++||+++|+|.++. |-++.++. +.. .+
T Consensus 122 l~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~rgrs~---~~i~AAclYiACR~~~~-prtl~eI~~~~~--v~ 195 (310)
T PRK00423 122 LAFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGLIRGRSI---EGVVAAALYAACRRCKV-PRTLDEIAEVSR--VS 195 (310)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCH---HHHHHHHHHHHHHHcCC-CcCHHHHHHHhC--CC
Confidence 3556677889999999999999999999999999877766665 99999999999999766 55677776 543 67
Q ss_pred HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 166 NKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 166 ~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
.++|-+.++.|++.|+.++....|.+|+..|...++.+..
T Consensus 196 ~k~i~~~~~~l~k~L~~~~~~~~p~~~i~r~~~~L~L~~~ 235 (310)
T PRK00423 196 RKEIGRCYRFLLRELNLKLPPTDPIDYVPRFASELGLSGE 235 (310)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999999999987543
No 16
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=98.27 E-value=1.3e-06 Score=76.59 Aligned_cols=104 Identities=19% Similarity=0.393 Sum_probs=86.7
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee--c-ccCCCcH
Q 026992 92 EWIFNKRAMF--GFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ--V-DDFDFEN 166 (229)
Q Consensus 92 ~Wi~~v~~~~--~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~--~-~~~~~t~ 166 (229)
.-+++.+..| .+.+.++..|+.+|-||.-...+..-.+ +.+.+||+++|+|++|.++ ++.+|+ + .+..-+.
T Consensus 61 ~~l~~f~~k~~p~lp~~Vv~TA~~fFkRffL~nsvme~~p---k~I~~tc~flA~Kieef~I-SieqFvkn~~~~~~k~~ 136 (325)
T KOG2496|consen 61 LSLVNFYSKFKPNLPTSVVSTAIEFFKRFFLENSVMEYSP---KIIMATCFFLACKIEEFYI-SIEQFVKNMNGRKWKTH 136 (325)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhcchhhcCh---HHHHHHHHHHHhhhHhhee-cHHHHHhhccCcccccH
Confidence 3445566665 5789999999999999999999988888 9999999999999998865 367775 3 2345678
Q ss_pred HHHHHHHHHHHHHcCCcccCCChHHHHHHHHHH
Q 026992 167 KVIQRMELLVLSTLDWKMGSITPFAFLHYFMIK 199 (229)
Q Consensus 167 ~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~ 199 (229)
+.|+..|..+++.|+|++..-+|+.=++-|+..
T Consensus 137 e~vLk~E~~llqsL~f~L~vh~PyRPleGFl~D 169 (325)
T KOG2496|consen 137 EIVLKYEFLLLQSLKFSLTVHNPYRPLEGFLLD 169 (325)
T ss_pred HHHHhchHHHHHhhhhhheecCCCCchHHHHHH
Confidence 999999999999999999999999877766643
No 17
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=5.5e-07 Score=81.29 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee--ccc-
Q 026992 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ--VDD- 161 (229)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~--~~~- 161 (229)
++|. +=.=|.++....++..-|+..|..||.....+..+.+.+. .|.|.|||.+|+||.+.+-..++.+. ..+
T Consensus 381 KirS-lKREMr~l~~d~~id~~TVa~AyVYFEKliLkglisK~NR---KlcAGAclLlaaKmnD~Kks~vKslIek~Ee~ 456 (497)
T KOG4164|consen 381 KIRS-LKREMRELGEDCGIDVVTVAMAYVYFEKLILKGLISKQNR---KLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQ 456 (497)
T ss_pred HHHH-HHHHHHHhhhccCccceeehhHHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4444 4445777888899999999999999999999999988887 99999999999999987766677765 333
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcccCC
Q 026992 162 FDFENKVIQRMELLVLSTLDWKMGSI 187 (229)
Q Consensus 162 ~~~t~~~i~~mE~~IL~~L~w~l~~p 187 (229)
..+..++++..|.-||.+|+|.|+.|
T Consensus 457 fR~nrrdLia~Ef~VlvaLefaL~~~ 482 (497)
T KOG4164|consen 457 FRLNRRDLIAFEFPVLVALEFALHLP 482 (497)
T ss_pred hcccHHhhhhhhhhHHHhhhhhccCC
Confidence 78899999999999999999999955
No 18
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=97.26 E-value=0.0075 Score=53.44 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCC
Q 026992 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFD 163 (229)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~ 163 (229)
+.-..+..-+-.++..++++..+.-.|..++=+.+.+.-+..... +-+++||+++|++.... +-.+.++. ..+
T Consensus 95 rnl~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsi---e~v~AA~iY~acR~~~~-prtl~eIa~a~~-- 168 (285)
T COG1405 95 RNLITALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSI---ESVAAACIYAACRINGV-PRTLDEIAKALG-- 168 (285)
T ss_pred hHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcH---HHHHHHHHHHHHHHcCC-CccHHHHHHHHC--
Confidence 345567778889999999999999999999998888877776665 99999999999999766 44455555 444
Q ss_pred CcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCc
Q 026992 164 FENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRP 206 (229)
Q Consensus 164 ~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~ 206 (229)
.+.++|.++.+.+.+.|+=.+.+..|.+|+..|...|+.+..-
T Consensus 169 V~~kei~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L~l~~~v 211 (285)
T COG1405 169 VSKKEIGRTYRLLVRELKLKIPPVDPSDYIPRFASKLGLSDEV 211 (285)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 6789999999999999999999999999999999999987443
No 19
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=97.08 E-value=0.0041 Score=54.73 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcH
Q 026992 88 LDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFEN 166 (229)
Q Consensus 88 ~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~ 166 (229)
.....-|..++...++.....-.|-.+|-++-..+.....+. +-++.||++||+.-++. |-.+.+++ +.. .+.
T Consensus 105 ~~a~~~I~~m~d~~~Lp~~I~d~A~~ifk~v~~~k~lrGks~---eai~AAclyiACRq~~~-pRT~kEI~~~an--v~k 178 (308)
T KOG1597|consen 105 KAAFKEITAMCDRLSLPATIKDRANEIFKLVEDSKLLRGKSV---EALAAACLYIACRQEDV-PRTFKEISAVAN--VSK 178 (308)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhhhcCccH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHc--CCH
Confidence 344555778899999999999999999999996666555554 99999999999998765 55566666 444 889
Q ss_pred HHHHHHHHHHHHHcCCcccCCC--hHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 026992 167 KVIQRMELLVLSTLDWKMGSIT--PFAFLHYFMIKLCGECRPKELVSRAVE 215 (229)
Q Consensus 167 ~~i~~mE~~IL~~L~w~l~~pT--p~~Fl~~~l~~l~~~~~~~~i~~~~~~ 215 (229)
+||-+.=..|+..|+=.....| .-+|+.+|-..|..+......+..+++
T Consensus 179 KEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFCs~L~L~~~~q~aA~e~a~ 229 (308)
T KOG1597|consen 179 KEIGRCVKLIGEALETSVDLISISTGDFMPRFCSNLGLPKSAQEAATEIAE 229 (308)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999988887776 889999999999877665544444333
No 20
>KOG1674 consensus Cyclin [General function prediction only]
Probab=96.74 E-value=0.0039 Score=53.11 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCc---cCCc---chhH-HHHHHHHHHHHHhhhhhcCCCCcccee-ccc
Q 026992 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRS---IDDG---KLWA-IRLLSVACLSLAAKMEECQVPALSEFQ-VDD 161 (229)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~---i~~~---~~~~-lqLla~acL~lAsK~eE~~~p~l~~l~-~~~ 161 (229)
+-+++..+.++-+.+++++.+|..|||||..+.+ +... +..+ ++-+-++|+.+|+|+.+...-.-.-++ +
T Consensus 78 i~~yleri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~v-- 155 (218)
T KOG1674|consen 78 IRQYLERIFKYSKCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKV-- 155 (218)
T ss_pred hHHHHHHHHHHhcCCchhhhhhhhhhhhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHh--
Confidence 3456667888889999999999999999999733 1111 1113 456789999999999866433333333 3
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcccCC
Q 026992 162 FDFENKVIQRMELLVLSTLDWKMGSI 187 (229)
Q Consensus 162 ~~~t~~~i~~mE~~IL~~L~w~l~~p 187 (229)
+..+.+++..+|+..|..++|++..+
T Consensus 156 ggl~~~eln~lE~~~l~~~~~~l~i~ 181 (218)
T KOG1674|consen 156 GGLTTDELNKLELDLLFLLDFRLIIS 181 (218)
T ss_pred CCCChHhhhhhhHHHHhhCCeEEEec
Confidence 44778899999999999999999974
No 21
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=96.18 E-value=0.03 Score=38.79 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccce
Q 026992 94 IFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEF 157 (229)
Q Consensus 94 i~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l 157 (229)
|-+++..++++..+.-.|..++.+-....-....++ .-++++|+++|++..... .++.++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~~~Gr~~---~~iaAA~iY~acr~~~~~-~t~~eI 60 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGLLKGRSP---ESIAAACIYLACRLNGVP-RTLKEI 60 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTTSTTS-H---HHHHHHHHHHHHHHTTSS-SSHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCCcccCCH---HHHHHHHHHHHHHHcCCC-cCHHHH
Confidence 457899999999999999999999888876666666 999999999999997653 234444
No 22
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=94.11 E-value=0.33 Score=43.44 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHH
Q 026992 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVI 169 (229)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i 169 (229)
-++|-.++..++++..+.-.|..++.+.....-....++ .-+|+||+++|++..... .++.++. ++ ..+...|
T Consensus 220 ~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P---~sIAAAaIYlA~~~~g~~-~t~keIa~v~--~Vs~~tI 293 (310)
T PRK00423 220 IDYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGP---TGLAAAAIYIASLLLGER-RTQREVAEVA--GVTEVTV 293 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCH---HHHHHHHHHHHHHHhCCC-CCHHHHHHHc--CCCHHHH
Confidence 478889999999999999999999988876655556667 999999999999987543 3455554 43 3667777
Q ss_pred HHHHHHHHHHcCCc
Q 026992 170 QRMELLVLSTLDWK 183 (229)
Q Consensus 170 ~~mE~~IL~~L~w~ 183 (229)
.+.=..+.+.|+-.
T Consensus 294 ~~~ykel~~~l~~~ 307 (310)
T PRK00423 294 RNRYKELAEKLDIK 307 (310)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777777766543
No 23
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription]
Probab=92.72 E-value=1 Score=42.99 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHH
Q 026992 93 WIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQR 171 (229)
Q Consensus 93 Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~ 171 (229)
-|-+++..+++.. ..-.|.++|-.-+...-.+..+. +.+-.+|+++++..+-+... +-+|. +- ..+.-++=.
T Consensus 73 ~i~~~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~---~~vvasClY~vcR~e~t~hl-liDfS~~L--qv~Vy~LG~ 145 (521)
T KOG1598|consen 73 LIEELTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRS---TEVVAACLYLVCRLEKTDHL-LIDFSSYL--QVSVYDLGS 145 (521)
T ss_pred HHHHHHHhcCcch-HHHHHHHHHHHHhhCCCCCCcch---HHHHHHHHHHHHHhhCCceE-EEEeccce--EEehhhhhH
Confidence 4678999999999 99999999998888877777765 99999999999999866432 33333 21 133444555
Q ss_pred HHHHHHHHcCCc---ccCCChHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhh
Q 026992 172 MELLVLSTLDWK---MGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITK 222 (229)
Q Consensus 172 mE~~IL~~L~w~---l~~pTp~~Fl~~~l~~l~~~~~~~~i~~~~~~~~l~~~~ 222 (229)
+=+.+-..|.=. +-..-|.-|+.+|..++-..+....++.-+.+++-.+-|
T Consensus 146 ~~l~l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~~~Vv~~a~~L~~rMkr 199 (521)
T KOG1598|consen 146 NFLEVTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKTEDVAKTATRLAQRMKR 199 (521)
T ss_pred HHHHHHHHhccccccccccCcceeeechhHhhhcCCchHHHHHHHHHHHHHHHH
Confidence 566677777766 667889999999999998888888887777777666554
No 24
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=87.84 E-value=1.4 Score=32.51 Aligned_cols=85 Identities=12% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHH
Q 026992 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVI 169 (229)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i 169 (229)
.+|+.......+.+.++..+|-.+++..+....+-.-++ -.+|+||+++|.++-....+.-..+. ++ .++.+++
T Consensus 4 ~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~fl~~~P---S~iAaAai~lA~~~~~~~~~~~~~l~~~t--~~~~~~l 78 (118)
T PF02984_consen 4 YDFLRRFLKISNADQEVRNLARYLLELSLLDYEFLQYPP---SVIAAAAILLARKILGKEPPWPESLEKLT--GYDKEDL 78 (118)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHHHTTS-H---HHHHHHHHHHHHHHHHSSTCSHHHHHHHH--TS-HHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhccccCCCH---HHHHHHHHHHHHHHhCccccCCccchhhc--CCCHHHH
Confidence 344444433334456788888888888777766767777 89999999999999663232223333 44 3477777
Q ss_pred HHHHHHHHHHc
Q 026992 170 QRMELLVLSTL 180 (229)
Q Consensus 170 ~~mE~~IL~~L 180 (229)
..+=..|.+.+
T Consensus 79 ~~c~~~i~~~~ 89 (118)
T PF02984_consen 79 KECIELIQELL 89 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76555555444
No 25
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=87.56 E-value=1.9 Score=38.28 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhh
Q 026992 89 DAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEE 148 (229)
Q Consensus 89 ~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE 148 (229)
.-.++|-..+..+|++.++--.|..+++............+ .-+|+||+++|+++..
T Consensus 193 ~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~g~~~Gk~P---~glAaaaiy~as~l~~ 249 (285)
T COG1405 193 DPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRAGLTAGKSP---AGLAAAAIYLASLLLG 249 (285)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccCCCc---hhHHHHHHHHHHHHhC
Confidence 34678889999999999999999999999998877777777 8999999999999965
No 26
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=85.02 E-value=1.1 Score=40.50 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee---cccCCC
Q 026992 88 LDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ---VDDFDF 164 (229)
Q Consensus 88 ~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~---~~~~~~ 164 (229)
.-+++|+..+-..-+........|-+++-..+...-.-.-++ +-+|++|+.||+|+-....|...+-. ..+...
T Consensus 153 ~~ll~~~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p---~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~v 229 (323)
T KOG0834|consen 153 KYLLKYLKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSP---HSIAVACIHLAAKLLGVELPSDTDKRWWREFDETV 229 (323)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHhchhheeeeeEeecC---cEEEeehhhHHHHHcCCCCCCCcccchhhhhcccC
Confidence 345666666655555554566777777766665544444455 78899999999999777666555542 344568
Q ss_pred cHHHHHHHHHHHHHHcC
Q 026992 165 ENKVIQRMELLVLSTLD 181 (229)
Q Consensus 165 t~~~i~~mE~~IL~~L~ 181 (229)
+.+++..+...+|....
T Consensus 230 t~e~l~~i~~~~l~~y~ 246 (323)
T KOG0834|consen 230 TNELLDDICHEFLDLYE 246 (323)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999888887764
No 27
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=83.58 E-value=1.2 Score=39.86 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=64.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhhhcCccC-CcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHH
Q 026992 96 NKRAMFGFQFRTAYLSVDFLDRFLSKRSID-DGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRME 173 (229)
Q Consensus 96 ~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~-~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE 173 (229)
..+....+..+..-....|++|-+.-.... ....| ..+.....++|+|+-......--+.+ +. ..-+.+++.+||
T Consensus 199 ~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w--~r~~~g~il~sskv~~dqs~wnvdycqIl-Kd~tveDmNe~E 275 (343)
T KOG1675|consen 199 ILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNW--SRAVLGEILLSSKVYDDQSVWNVDYCEIL-KDQSVDDMNALE 275 (343)
T ss_pred hHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchh--hhhhhhhheehhhhhhhhhcccHHHHHHH-hhccHhhHHHHH
Confidence 344445555666666678888877654433 22333 55555579999998544322222222 32 345789999999
Q ss_pred HHHHHHcCCcccCCChHHHHHHHHHHh
Q 026992 174 LLVLSTLDWKMGSITPFAFLHYFMIKL 200 (229)
Q Consensus 174 ~~IL~~L~w~l~~pTp~~Fl~~~l~~l 200 (229)
+.+|..|+|+++.|- ..|..+|...-
T Consensus 276 RqfLelLqfNinvp~-svYAKyYfdlr 301 (343)
T KOG1675|consen 276 RQFLELLQFNINVPS-SEYAKYYFDLR 301 (343)
T ss_pred HHHHHHHhhccCccH-HHHHHHHHHHh
Confidence 999999999999875 45666665443
No 28
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=78.34 E-value=0.73 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 026992 187 ITPFAFLHYFMIKLCGECRPKELVSRAVELIMT 219 (229)
Q Consensus 187 pTp~~Fl~~~l~~l~~~~~~~~i~~~~~~~~l~ 219 (229)
|||++||++|++..+.......+.....++.+.
T Consensus 1 PTp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~ 33 (118)
T PF02984_consen 1 PTPYDFLRRFLKISNADQEVRNLARYLLELSLL 33 (118)
T ss_dssp --HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 899999999966433222334555666665443
No 29
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=47.60 E-value=89 Score=28.49 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhhhcCCCCccceecccCCCcHHHHHHHHHHHH
Q 026992 133 RLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVL 177 (229)
Q Consensus 133 qLla~acL~lAsK~eE~~~p~l~~l~~~~~~~t~~~i~~mE~~IL 177 (229)
..+|.+|+++|+...|+-.|.....- .-..++..+|...=..++
T Consensus 183 e~iACaciyLaAR~~eIpLp~~P~Wf-~~Fd~~k~eid~ic~~l~ 226 (367)
T KOG0835|consen 183 ESIACACIYLAARNLEIPLPFQPHWF-KAFDTTKREIDEICYRLI 226 (367)
T ss_pred HHHHHHHHHHHHhhhcCCCCCCccHH-HHcCCcHHHHHHHHHHHH
Confidence 78999999999999996555555332 223455666555444433
No 30
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=39.49 E-value=1.3e+02 Score=26.88 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCC
Q 026992 107 TAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVP 152 (229)
Q Consensus 107 T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p 152 (229)
....|..++...+...-.-...+ +.+|+||+++|+|......|
T Consensus 183 l~q~a~~~lndsl~Td~~L~y~P---s~IAlAAI~lA~~~~~~~l~ 225 (305)
T TIGR00569 183 LRKHADKFLNRTLLTDAYLLYTP---SQIALAAILHTASRAGLNME 225 (305)
T ss_pred HHHHHHHHHHHHHcCCceecCCH---HHHHHHHHHHHHHHhCCCCc
Confidence 34556677665544433334566 89999999999998655444
No 31
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=38.04 E-value=82 Score=28.20 Aligned_cols=54 Identities=4% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhh
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEE 148 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE 148 (229)
++|...|..++++..+.-.|-.+-.+.-.........+ --+|++.+++|+-..+
T Consensus 205 ~~m~RFCs~L~L~~~~q~aA~e~a~ka~~~~~~~gRsP---iSIAAa~IYmisqls~ 258 (308)
T KOG1597|consen 205 DFMPRFCSNLGLPKSAQEAATEIAEKAEEMDIRAGRSP---ISIAAAAIYMISQLSD 258 (308)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccCCCc---hhHHHHHHHHHHHhcc
Confidence 44555555666665555555555555554444444444 5567778888887765
No 32
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=35.71 E-value=55 Score=21.77 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=19.3
Q ss_pred CCChHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 026992 186 SITPFAFLHYFMIKLCGECRPKELVSRAVELIMT 219 (229)
Q Consensus 186 ~pTp~~Fl~~~l~~l~~~~~~~~i~~~~~~~~l~ 219 (229)
.|++.+|+..+...++.+.....++....+.++.
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~ 35 (88)
T cd00043 2 RPTPLDFLRRVAKALGLSPETLTLAVNLLDRFLL 35 (88)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4667777777777765554444444444444433
No 33
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=26.21 E-value=1.4e+02 Score=23.53 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=49.7
Q ss_pred HhCCChH-HHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCC-CCcccee--cccC-CCcHHHHHHHHH
Q 026992 100 MFGFQFR-TAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQV-PALSEFQ--VDDF-DFENKVIQRMEL 174 (229)
Q Consensus 100 ~~~l~~~-T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~-p~l~~l~--~~~~-~~t~~~i~~mE~ 174 (229)
.++.+.. .+.+.+.||-| -+.+.... -+.--..+|+||.-|||... |+..-+. +..+ .-...++.++-.
T Consensus 24 ~~~~sDKYLLAmV~~YF~R----agl~~~~Y--~ri~FFlALYLAndmEED~~~~K~~If~f~~G~~w~~~~~~F~klr~ 97 (131)
T PF11357_consen 24 CLRVSDKYLLAMVIAYFSR----AGLFSWQY--QRIHFFLALYLANDMEEDDEEPKYEIFPFLYGKNWRSQIPQFHKLRD 97 (131)
T ss_pred chhhhhHHHHHHHHHHHHh----cccchhhc--chHHHHHHHHHhhHHHhccchHHHHHHHHHHCcchHHHhHHHHHHHH
Confidence 3444444 44555555544 33333322 24556789999999998754 4444444 3333 344567888888
Q ss_pred HHHHHcCCcccC
Q 026992 175 LVLSTLDWKMGS 186 (229)
Q Consensus 175 ~IL~~L~w~l~~ 186 (229)
.....++|+.-+
T Consensus 98 ~~~~~m~~Ra~V 109 (131)
T PF11357_consen 98 QFWRRMDWRAWV 109 (131)
T ss_pred HHHHHcCCceee
Confidence 899999998764
No 34
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=25.76 E-value=65 Score=23.28 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 026992 88 LDAIEWIFNKRAMFGFQFRTAYLSVDFLD 116 (229)
Q Consensus 88 ~~~v~Wi~~v~~~~~l~~~T~~lAv~~lD 116 (229)
.++|+|+++.. ...-..+++.++..++|
T Consensus 36 sElVdWL~~~~-~~~sR~eAv~lgq~Ll~ 63 (85)
T cd04441 36 SEFIDWLLQEG-EAESRREAVQLCRRLLE 63 (85)
T ss_pred hHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 57999999854 22233444444444444
No 35
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=25.28 E-value=93 Score=18.99 Aligned_cols=20 Identities=20% Similarity=0.575 Sum_probs=18.1
Q ss_pred cccCCChHHHHHHHHHHhcC
Q 026992 183 KMGSITPFAFLHYFMIKLCG 202 (229)
Q Consensus 183 ~l~~pTp~~Fl~~~l~~l~~ 202 (229)
+++...|+.|+.+.+.++..
T Consensus 7 K~ngv~P~~yL~~vL~~i~~ 26 (39)
T PF13817_consen 7 KLNGVNPYAYLTDVLERIPN 26 (39)
T ss_pred HHcCCCHHHHHHHHHHHHcc
Confidence 57889999999999999987
No 36
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=24.26 E-value=1.7e+02 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 026992 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRF 118 (229)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRf 118 (229)
-..|..+|++|..+...-|++.+. |+..+|.+
T Consensus 49 y~rRK~Ii~~I~~l~~~~g~~~~~---ai~~le~~ 80 (81)
T PF12550_consen 49 YSRRKVIIDFIERLANERGISEEE---AIEILEEI 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH---HHHHHHhc
Confidence 357999999999998887776654 56666654
No 37
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=22.49 E-value=1.1e+02 Score=24.47 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhh
Q 026992 107 TAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKM 146 (229)
Q Consensus 107 T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~ 146 (229)
|+.-|+.-||-+....++...+...++.+|++++++.||.
T Consensus 30 t~~ea~~~f~yi~~~~~f~~~er~~~~~~Ga~aM~~isk~ 69 (149)
T cd03197 30 TWSEALASFDYITPSGYFGYWEKFFAKYVGAAAMYLISKY 69 (149)
T ss_pred CHHHHHHhhhhHhcCCCccHHHHHHHHHhhHHHHHHHHHH
Confidence 6677888888888887775444445799999999999998
No 38
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=22.27 E-value=1.7e+02 Score=20.72 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhhh
Q 026992 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLS 120 (229)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs 120 (229)
+.-+..++..|+++.+.+.+++.++||--.
T Consensus 45 l~~~~rL~~Dl~in~~gi~lil~LLd~i~~ 74 (84)
T PF13591_consen 45 LRRIRRLHRDLGINLEGIALILDLLDRIEQ 74 (84)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345668899999999999999999998643
No 39
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=22.15 E-value=85 Score=22.24 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLD 116 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lD 116 (229)
=.++|+|+.+-.....=..+++.++-.++|
T Consensus 32 G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~ 61 (83)
T cd04449 32 GSEAVSWLINNFEDVDTREEAVELGQELMN 61 (83)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 467999998744322223344444444444
No 40
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=21.47 E-value=2e+02 Score=19.97 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhh
Q 026992 105 FRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEE 148 (229)
Q Consensus 105 ~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE 148 (229)
.+.+..|..++|.-+....-.....-..+++.+|||.+|.++..
T Consensus 20 ee~l~~~a~~i~~~i~~~~~~~~~~~~~~~~vlaaLnla~e~~~ 63 (89)
T PF05164_consen 20 EEYLRKAAELINEKINEIKKKYPKLSPERLAVLAALNLADELLK 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566778888877754222111111248999999999998843
No 41
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.92 E-value=91 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLD 116 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lD 116 (229)
=..+|+||++... -.-..+++.+|-.++|
T Consensus 33 GselVdWL~~~~~-~~sR~eAv~lg~~Ll~ 61 (83)
T cd04443 33 GCDLVSWLIEVGL-AQDRGEAVLYGRRLLQ 61 (83)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Confidence 4579999997521 1223355555555555
No 42
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=20.66 E-value=81 Score=22.42 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDR 117 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDR 117 (229)
=..+|+||++.... .-..+.+.++-.++|.
T Consensus 31 GselVdWL~~~~~~-~~r~eAv~lg~~Ll~~ 60 (81)
T cd04439 31 GNEFVSWLLEIGEI-SKPEEGVNLGQALLEN 60 (81)
T ss_pred hHHHHHHHHHcCCC-CCHHHHHHHHHHHHHC
Confidence 35699999975421 1123555555555553
No 43
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=20.45 E-value=88 Score=22.39 Aligned_cols=11 Identities=18% Similarity=0.857 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 026992 88 LDAIEWIFNKR 98 (229)
Q Consensus 88 ~~~v~Wi~~v~ 98 (229)
.++|+||++..
T Consensus 32 selVdWL~~~~ 42 (82)
T cd04442 32 KELIDWLIEHK 42 (82)
T ss_pred HHHHHHHHHcC
Confidence 56999999654
No 44
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=20.09 E-value=1.9e+02 Score=27.40 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc
Q 026992 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSK 121 (229)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~ 121 (229)
+.+.....|++..+...+++..++..|.+|||+|-+.
T Consensus 395 ~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~ 431 (467)
T TIGR00873 395 KDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA 431 (467)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 3455566899999999999999999999999999984
Done!