Query 026992
Match_columns 229
No_of_seqs 235 out of 1345
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 3.6E-37 1.2E-41 272.4 18.8 164 49-219 37-201 (306)
2 1f5q_B Gamma herpesvirus cycli 100.0 6.1E-37 2.1E-41 264.2 13.6 144 50-205 21-165 (252)
3 2w96_A G1/S-specific cyclin-D1 100.0 2.6E-36 8.8E-41 262.3 15.3 163 50-219 24-187 (271)
4 2f2c_A Cyclin homolog, V-cycli 100.0 8.1E-36 2.8E-40 257.0 17.6 160 51-218 21-181 (254)
5 2cch_B Cyclin A2, cyclin-A; co 100.0 1.4E-35 4.9E-40 256.2 16.0 163 47-217 4-168 (260)
6 1g3n_C V-cyclin; cyclin-depend 100.0 2.8E-35 9.6E-40 254.0 16.6 160 50-217 19-179 (257)
7 1w98_B Cyclin E, G1/S-specific 100.0 2.2E-34 7.4E-39 252.0 19.3 154 40-203 10-165 (283)
8 2b9r_A Human cyclin B1; cell c 100.0 5.5E-35 1.9E-39 253.9 13.5 148 47-203 4-152 (269)
9 2ivx_A Cyclin-T2; transcriptio 99.9 2.5E-25 8.7E-30 191.4 12.6 117 83-203 27-160 (257)
10 2i53_A Cyclin K; cell cycle, t 99.9 2.8E-25 9.5E-30 191.0 10.5 120 81-204 35-166 (258)
11 1zp2_A RNA polymerase II holoe 99.9 5.6E-24 1.9E-28 180.9 12.6 112 87-202 28-147 (235)
12 3rgf_B Cyclin-C; protein kinas 99.9 4.1E-24 1.4E-28 186.9 11.6 116 84-202 40-170 (285)
13 2pk2_A Cyclin-T1, protein TAT; 99.9 1.5E-24 5.2E-29 195.3 7.8 116 83-202 34-166 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 2.8E-21 9.7E-26 171.8 15.8 113 84-200 54-174 (323)
15 1c9b_A General transcription f 99.7 2.6E-17 8.8E-22 137.0 12.6 114 86-205 4-118 (207)
16 1ais_B TFB TFIIB, protein (tra 99.5 1E-13 3.5E-18 114.5 11.5 114 85-204 7-123 (200)
17 3k7a_M Transcription initiatio 99.0 2E-10 6.7E-15 102.7 5.6 113 87-205 126-251 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 98.6 2.1E-07 7.1E-12 80.9 9.8 109 90-202 77-187 (293)
19 4bbr_M Transcription initiatio 98.3 1.1E-06 3.9E-11 78.3 7.9 112 88-205 127-251 (345)
20 1ais_B TFB TFIIB, protein (tra 96.5 0.011 3.8E-07 47.8 8.5 87 92-184 110-197 (200)
21 1c9b_A General transcription f 94.1 0.15 5.2E-06 41.2 7.4 85 91-181 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 90.3 2.6 9E-05 34.9 10.6 86 92-180 148-238 (257)
23 2i53_A Cyclin K; cell cycle, t 90.3 1.5 5.1E-05 36.3 9.1 87 92-181 153-250 (258)
24 2pk2_A Cyclin-T1, protein TAT; 86.8 2.4 8.1E-05 37.4 8.3 86 93-181 156-246 (358)
25 1zp2_A RNA polymerase II holoe 86.4 1.3 4.6E-05 36.3 6.1 80 93-179 137-217 (235)
26 3rgf_B Cyclin-C; protein kinas 84.9 2.1 7.1E-05 36.4 6.8 103 92-203 159-262 (285)
27 3k7a_M Transcription initiatio 80.0 0.35 1.2E-05 42.5 0.0 55 92-149 237-291 (345)
28 2f2c_A Cyclin homolog, V-cycli 79.8 4.7 0.00016 33.3 7.0 83 93-180 155-246 (254)
29 2cch_B Cyclin A2, cyclin-A; co 78.2 4.4 0.00015 33.6 6.4 84 91-180 140-226 (260)
30 4bbr_M Transcription initiatio 76.5 0.52 1.8E-05 41.5 0.0 57 90-149 235-291 (345)
31 1g3n_C V-cyclin; cyclin-depend 76.0 6.7 0.00023 32.5 6.8 84 91-179 152-245 (257)
32 2b9r_A Human cyclin B1; cell c 73.2 6.1 0.00021 33.0 5.9 55 92-149 140-194 (269)
33 3h4c_A Transcription factor TF 67.7 24 0.00084 28.9 7.9 87 89-181 14-103 (260)
34 3g33_B CCND3 protein; Ser/Thr 61.2 12 0.00041 32.0 5.4 70 110-184 195-269 (306)
35 3m03_A ORC6, origin recognitio 59.4 44 0.0015 23.7 7.4 78 94-178 6-89 (95)
36 2w96_A G1/S-specific cyclin-D1 58.6 18 0.00062 30.0 6.0 51 133-183 201-258 (271)
37 1jkw_A Cyclin H; cell cycle, c 56.8 26 0.00089 30.0 6.8 91 105-200 185-277 (323)
38 1w98_B Cyclin E, G1/S-specific 31.8 1.3E+02 0.0045 24.9 7.1 35 133-177 202-237 (283)
39 2wh0_Q Pkcev3, protein kinase 22.3 67 0.0023 17.3 2.2 18 166-183 12-29 (31)
40 1wh7_A ZF-HD homeobox family p 21.6 88 0.003 21.0 3.4 38 162-201 22-59 (80)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=272.41 Aligned_cols=164 Identities=20% Similarity=0.368 Sum_probs=147.4
Q ss_pred chHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcc
Q 026992 49 GDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGK 128 (229)
Q Consensus 49 ~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~ 128 (229)
+++|++++|+++|.++.|+++|+... ..++++.+|..+|+||.+|+..|+++++|+++||+|||||+++..+.+.+
T Consensus 37 ~~~~i~~~l~~~E~~~~p~~~y~~~~----q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~ 112 (306)
T 3g33_B 37 GDQRVLQSLLRLEERYVPRASYFQCV----QREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQ 112 (306)
T ss_dssp CHHHHHHHHHHHGGGGSCSSCCTTTS----TTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGG
T ss_pred chHHHHHHHHHHHHHhCCCcHHHhhc----CccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHH
Confidence 58999999999999999998887631 23588999999999999999999999999999999999999999988776
Q ss_pred hhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCcH
Q 026992 129 LWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPK 207 (229)
Q Consensus 129 ~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~~ 207 (229)
+ ||+|+|||+||+|+||..+|.+.++. ++++.|++++|++||+.||++|+|+++.|||++|+.+|++.++......
T Consensus 113 l---qLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~ 189 (306)
T 3g33_B 113 L---QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQ 189 (306)
T ss_dssp H---HHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTH
T ss_pred H---HHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHH
Confidence 5 99999999999999999999999999 8999999999999999999999999999999999999999988776655
Q ss_pred HHHHHHHHHHHH
Q 026992 208 ELVSRAVELIMT 219 (229)
Q Consensus 208 ~i~~~~~~~~l~ 219 (229)
..+.+.+..++.
T Consensus 190 ~~~~~~a~~~l~ 201 (306)
T 3g33_B 190 ALVKKHAQTFLA 201 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.1e-37 Score=264.22 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcch
Q 026992 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (229)
Q Consensus 50 ~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~ 129 (229)
.++++++|+++|.++.|. ....++++.+|..+|+||++|+.+|+++++|+++||+|+|||+++..+++.++
T Consensus 21 ~d~i~~~l~~~E~~~~p~---------~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~l 91 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVGV---------NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENY 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSSS---------SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred HHHHHHHHHHHHHHhCcC---------ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 459999999999998872 12345778999999999999999999999999999999999999999988875
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 130 ~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
||+|+|||+||+|+||..+|.+.+++ ++++.|++++|++||+.||++|+|+++.|||++|+++|++.++.+..
T Consensus 92 ---qLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 92 ---QSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999865543
No 3
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.6e-36 Score=262.35 Aligned_cols=163 Identities=20% Similarity=0.386 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcch
Q 026992 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (229)
Q Consensus 50 ~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~ 129 (229)
++|++++|+++|.++.|+++|+.. ...++++.+|..+++||.+++.+|+++++|+++||+|+|||+++..+++.++
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~----~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 99 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKC----VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 99 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHH----TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTH
T ss_pred HHHHHHHHHHHHHHhCCCchHHHh----cCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHH
Confidence 469999999999999999886532 1246789999999999999999999999999999999999999999988875
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCcHH
Q 026992 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKE 208 (229)
Q Consensus 130 ~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~~~ 208 (229)
|++|+|||+||+|+||..+|.+.+++ ++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.+...
T Consensus 100 ---qlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~ 176 (271)
T 2w96_A 100 ---QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQ 176 (271)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHH
Confidence 99999999999999999999999998 89999999999999999999999999999999999999999876544333
Q ss_pred HHHHHHHHHHH
Q 026992 209 LVSRAVELIMT 219 (229)
Q Consensus 209 i~~~~~~~~l~ 219 (229)
.+.+.+..++.
T Consensus 177 ~~~~~a~~~l~ 187 (271)
T 2w96_A 177 IIRKHAQTFVA 187 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=8.1e-36 Score=256.98 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchh
Q 026992 51 EEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLW 130 (229)
Q Consensus 51 ~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~ 130 (229)
+|+++ |+++|.++.|+++|+.. ...++++++|..+|+||.+|+.+|+++++|+++||+|+|||+++..+++.++
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~----~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~l- 94 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWE----IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL- 94 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTT----TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTH-
T ss_pred HHHHH-HHHHHHhhCCCchhhhh----cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHc-
Confidence 89999 99999999999888752 1245789999999999999999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCcHHH
Q 026992 131 AIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKEL 209 (229)
Q Consensus 131 ~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~~~i 209 (229)
||+|+|||+||+|+||..+|.+.+++ ++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+......
T Consensus 95 --qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~ 172 (254)
T 2f2c_A 95 --QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQ 172 (254)
T ss_dssp --HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHH
T ss_pred --cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999876554444
Q ss_pred HHHHHHHHH
Q 026992 210 VSRAVELIM 218 (229)
Q Consensus 210 ~~~~~~~~l 218 (229)
+.+.+..++
T Consensus 173 ~~~~a~~ll 181 (254)
T 2f2c_A 173 LYEAASTTI 181 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 5
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.4e-35 Score=256.24 Aligned_cols=163 Identities=27% Similarity=0.369 Sum_probs=146.6
Q ss_pred CCchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCC
Q 026992 47 GNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDD 126 (229)
Q Consensus 47 ~~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~ 126 (229)
.+|.+|++++|+++|.++.|+++|+..+ +++++.+|..+++||.+++..|+++++|+++||+|+|||+++..+++
T Consensus 4 ~eY~~di~~~l~~~E~~~~p~~~y~~~q-----~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~ 78 (260)
T 2cch_B 4 PDYHEDIHTYLREMEVKCKPKVGYMKKQ-----PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLR 78 (260)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCTTGGGGC-----SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCH
T ss_pred HhHHHHHHHHHHHHHhhcCCCchhhhcC-----CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCH
Confidence 4899999999999999999998887754 45789999999999999999999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCC-
Q 026992 127 GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGEC- 204 (229)
Q Consensus 127 ~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~- 204 (229)
.+. |++|+|||+||+|+||..+|.+.+++ ++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.
T Consensus 79 ~~l---qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~ 155 (260)
T 2cch_B 79 GKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC 155 (260)
T ss_dssp HHH---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH
T ss_pred HHH---hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH
Confidence 775 99999999999999999999999999 9999999999999999999999999999999999999999887554
Q ss_pred CcHHHHHHHHHHH
Q 026992 205 RPKELVSRAVELI 217 (229)
Q Consensus 205 ~~~~i~~~~~~~~ 217 (229)
....++...+++.
T Consensus 156 ~~~~~a~~l~e~s 168 (260)
T 2cch_B 156 KVESLAMFLGELS 168 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2234444455543
No 6
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.8e-35 Score=254.01 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcch
Q 026992 50 DEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL 129 (229)
Q Consensus 50 ~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~ 129 (229)
++|++ +|+++|.++.|+++|+.. ...++++.+|..+|+||.+|+..|+++++|+++||+|+|||+++..+++.++
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~----~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGT----FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHF 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHH----HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHH-HHHHHHHHhCCChhHHHh----cCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHH
Confidence 38899 999999999998876531 1245889999999999999999999999999999999999999999988775
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCCcHH
Q 026992 130 WAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKE 208 (229)
Q Consensus 130 ~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~~~~ 208 (229)
||+|+|||+||||+||..+|.+.+++ ++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.....
T Consensus 94 ---qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~ 170 (257)
T 1g3n_C 94 ---QKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLD 170 (257)
T ss_dssp ---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHH
T ss_pred ---HHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999987665544
Q ss_pred HHHHHHHHH
Q 026992 209 LVSRAVELI 217 (229)
Q Consensus 209 i~~~~~~~~ 217 (229)
.+.+.+..+
T Consensus 171 ~~~~~a~~~ 179 (257)
T 1g3n_C 171 FWHHEVNTL 179 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.2e-34 Score=251.97 Aligned_cols=154 Identities=23% Similarity=0.403 Sum_probs=140.2
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhh
Q 026992 40 DPCCFVLGNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFL 119 (229)
Q Consensus 40 ~~~~~~~~~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfL 119 (229)
+|..+. +|++|++++|+++|.++.|+++|+..+ +++++++|..+++||.+++.+|+++++|+++||+|+|||+
T Consensus 10 ~p~l~~--~y~~~i~~~l~~~E~~~~~~~~y~~~q-----~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl 82 (283)
T 1w98_B 10 LPVLSW--ANREEVWKIMLNKEKTYLRDQHFLEQH-----PLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYM 82 (283)
T ss_dssp SCCCSS--SCHHHHHHHHHHHTTTSCCCTTGGGGC-----TTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHH
T ss_pred Ccchhh--cCHHHHHHHHHHHHHHhCCCchhhccC-----CCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 344443 789999999999999999988887643 4578999999999999999999999999999999999999
Q ss_pred hc-CccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHH
Q 026992 120 SK-RSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFM 197 (229)
Q Consensus 120 s~-~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l 197 (229)
++ ..+++.+ +|++|+|||+||+|+||..+|.+.++. ++++.|++++|.+||+.||++|+|++++|||++|+.+|+
T Consensus 83 s~~~~v~~~~---lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~ 159 (283)
T 1w98_B 83 ATQENVVKTL---LQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYM 159 (283)
T ss_dssp HHCCCCCGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HhCCCCCHHH---HHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHH
Confidence 98 5777665 599999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHhcCC
Q 026992 198 IKLCGE 203 (229)
Q Consensus 198 ~~l~~~ 203 (229)
+.++.+
T Consensus 160 ~~~~~~ 165 (283)
T 1w98_B 160 QVAYLN 165 (283)
T ss_dssp HHHTCC
T ss_pred HHhccC
Confidence 987654
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=5.5e-35 Score=253.93 Aligned_cols=148 Identities=22% Similarity=0.345 Sum_probs=136.8
Q ss_pred CCchHHHHHHHHHHHhccCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCC
Q 026992 47 GNGDEEFIEKLVDKETDFGSKGCGFSDDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDD 126 (229)
Q Consensus 47 ~~~~~e~l~~l~~~E~~~~~~~~~~~~~~~~~~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~ 126 (229)
.+|.+|++++|+++|.++.|+++|+..+ ++++++|..+++||.+++..|+++++|+++|++|+|||++...+++
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~q------~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~ 77 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLGR------EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPK 77 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSSS------SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccCC------CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcH
Confidence 3788999999999999999998887642 6889999999999999999999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCC
Q 026992 127 GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGE 203 (229)
Q Consensus 127 ~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~ 203 (229)
.++ |++|+|||+||+|+||..+|.+.+++ ++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+
T Consensus 78 ~~l---qlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~ 152 (269)
T 2b9r_A 78 KML---QLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD 152 (269)
T ss_dssp GGH---HHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC
T ss_pred HHh---hHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC
Confidence 875 99999999999999999999999999 999999999999999999999999999999999999999876543
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.92 E-value=2.5e-25 Score=191.36 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cc-
Q 026992 83 LKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD- 160 (229)
Q Consensus 83 ~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~- 160 (229)
...+|..+++||.+++..|+++++|+++|++|||||+++..+.+.++ |++|+|||+||+|+||. ++.+.+++ ++
T Consensus 27 e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~---qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 27 ELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNK---NIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCH---HHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 35899999999999999999999999999999999999999988886 99999999999999999 88888885 32
Q ss_pred -------------cCCCc--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCC
Q 026992 161 -------------DFDFE--NKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGE 203 (229)
Q Consensus 161 -------------~~~~t--~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~ 203 (229)
+..|+ +++|.+||+.||++|+|+++.|||+.|+..|++.++.+
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~ 160 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS 160 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC
Confidence 34555 99999999999999999999999999999999998654
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.92 E-value=2.8e-25 Score=190.99 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=107.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-c
Q 026992 81 SWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-V 159 (229)
Q Consensus 81 ~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~ 159 (229)
+....+|..+++||.+++..++++++|+++|++|||||+++..+.+.++ |++|+|||+||+|+||. ++.+.+++ +
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~---qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPR---YVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCH---HHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 3556899999999999999999999999999999999999999988876 99999999999999995 77888886 4
Q ss_pred c-----cCCC------cHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCC
Q 026992 160 D-----DFDF------ENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGEC 204 (229)
Q Consensus 160 ~-----~~~~------t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~ 204 (229)
+ ++.| ++++|.+||+.||++|+|+++.|||+.|+..|++.++.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~ 166 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK 166 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCH
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCc
Confidence 3 3334 4899999999999999999999999999999999887543
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.91 E-value=5.6e-24 Score=180.89 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCC-cchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccC--
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDD-GKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDF-- 162 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~-~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~-- 162 (229)
|..+++||.+++..++++++|+++|++|+|||+++..+.+ .++ |++|+|||+||||+||. ++.+.+++ ++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~---~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSL---EALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCH---HHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988 776 99999999999999995 67788887 6643
Q ss_pred ----CCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcC
Q 026992 163 ----DFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG 202 (229)
Q Consensus 163 ----~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~ 202 (229)
.+++++|.+||+.||++|+|+++++||+.|+..|++.++.
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~ 147 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII 147 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999997643
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=186.91 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cc--
Q 026992 84 KCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD-- 160 (229)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~-- 160 (229)
.++|..+++||.+++..++++++|+++|++|||||++...+...++ |++|+|||+||||+||..+|.+.+++ ++
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~---~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDP---VLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCH---HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCH---HHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998886 99999999999999999888777775 43
Q ss_pred ------------cCCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcC
Q 026992 161 ------------DFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG 202 (229)
Q Consensus 161 ------------~~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~ 202 (229)
++.++.++|.+||+.||++|+|+++.+||+.|+..|++.++.
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~ 170 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ 170 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC
Confidence 245889999999999999999999999999999999999874
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.90 E-value=1.5e-24 Score=195.31 Aligned_cols=116 Identities=18% Similarity=0.136 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cc-
Q 026992 83 LKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD- 160 (229)
Q Consensus 83 ~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~- 160 (229)
...+|..+++||.+++..|+++++|+++|++|||||+++..+.+.++ |++|+|||+||+|+||. ++.+.+++ ++
T Consensus 34 E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~---qlva~acLfLA~K~EE~-p~~l~d~v~v~~ 109 (358)
T 2pk2_A 34 ELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPG---NSVAPAALFLAAKVEEQ-PKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccH---HHHHHHHHHHHHhhccC-CCCHHHHHHHHH
Confidence 35799999999999999999999999999999999999999988876 99999999999999999 77788886 43
Q ss_pred -------------cCCCc--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcC
Q 026992 161 -------------DFDFE--NKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG 202 (229)
Q Consensus 161 -------------~~~~t--~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~ 202 (229)
+..|+ +++|.+||+.||++|+|++++|||+.||..|++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~ 166 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA 166 (358)
T ss_dssp HHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC
T ss_pred HHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC
Confidence 33454 8999999999999999999999999999999998864
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.86 E-value=2.8e-21 Score=171.75 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cc
Q 026992 84 KCARLDAIEWIFNKRAMFG--FQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VD 160 (229)
Q Consensus 84 ~~~R~~~v~Wi~~v~~~~~--l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~ 160 (229)
..+|...++||.+++..|+ ++++|+++|++|||||++...+...++ |++|+|||+||||+||. ++.+.+++ ..
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~---~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHP---RIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCH---HHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4689999999999999999 999999999999999999999988886 99999999999999998 56788886 44
Q ss_pred cC-----CCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHh
Q 026992 161 DF-----DFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKL 200 (229)
Q Consensus 161 ~~-----~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l 200 (229)
.. .++.++|.+||+.||++|+|+++++||+.|+..|+..+
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l 174 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDL 174 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHH
Confidence 32 47789999999999999999999999999999999766
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.73 E-value=2.6e-17 Score=137.00 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCC
Q 026992 86 ARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDF 164 (229)
Q Consensus 86 ~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~ 164 (229)
......++|.+++..+++++.|...|+.|++||+....+...+. +++|+||+++|+|+||. ++.+.++. +.+ +
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~---~~v~aaclylAcK~ee~-p~~l~di~~~~~--~ 77 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRAN---DAIASACLYIACRQEGV-PRTFKEICAVSR--I 77 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCH---HHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--S
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCH---HHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--C
Confidence 46678899999999999999999999999999999999988876 99999999999999998 77888887 665 8
Q ss_pred cHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcCCCC
Q 026992 165 ENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 165 t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
+.++|.++|+.|++.|+|++..++|+.|+..|.+.++.+..
T Consensus 78 ~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~ 118 (207)
T 1c9b_A 78 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ 118 (207)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH
Confidence 89999999999999999999999999999999999976543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.51 E-value=1e-13 Score=114.47 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCC
Q 026992 85 CARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFD 163 (229)
Q Consensus 85 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~ 163 (229)
+......++|.+++..+++++.+...|..|++|++....+...+. +.+++||+++|+|.++. +..+.++. +.+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~---~~vaaAclylAcr~~~~-p~~l~di~~~~~-- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSI---ESVMAACVYAACRLLKV-PRTLDEIADIAR-- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCH---HHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCH---HHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--
Confidence 345689999999999999999999999999999999988877766 99999999999999984 77788887 655
Q ss_pred CcHHHHHHHHHHHHHHcCCcccC--CChHHHHHHHHHHhcCCC
Q 026992 164 FENKVIQRMELLVLSTLDWKMGS--ITPFAFLHYFMIKLCGEC 204 (229)
Q Consensus 164 ~t~~~i~~mE~~IL~~L~w~l~~--pTp~~Fl~~~l~~l~~~~ 204 (229)
++.++|.++++.|++.|+|++.. ++|..|+..|.+.++.+.
T Consensus 81 v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~ 123 (200)
T 1ais_B 81 VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE 123 (200)
T ss_dssp SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH
Confidence 78999999999999999999999 999999999999998653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2e-10 Score=102.69 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCc
Q 026992 87 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFE 165 (229)
Q Consensus 87 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t 165 (229)
...+...|..++..++++..+.-.|..|+.|++....+...+. +.+++|||++|+|.++. |..+.++. +.+ ++
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~---~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~ 199 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSM---ESIMAASILIGCRRAEV-ARTFKEIQSLIH--VK 199 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCS---HHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcH---HHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CC
Confidence 4567788999999999999999999999999999988877766 99999999999999877 77788887 655 78
Q ss_pred HHHHHHHHHHHHHHcC------------CcccCCChHHHHHHHHHHhcCCCC
Q 026992 166 NKVIQRMELLVLSTLD------------WKMGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 166 ~~~i~~mE~~IL~~L~------------w~l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
.++|.++++.|++.|+ +.+..++|..|+..|.+.++.+..
T Consensus 200 ~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~ 251 (345)
T 3k7a_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ 251 (345)
T ss_dssp SHHHHHHHHHHHHHHTCC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH
Confidence 8999999999999999 999999999999999999986643
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.58 E-value=2.1e-07 Score=80.90 Aligned_cols=109 Identities=6% Similarity=0.032 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcC-ccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHH
Q 026992 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKR-SIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENK 167 (229)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~-~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~ 167 (229)
+-+|+..+..+-++++.++..|+.|+||+.... .+... .+..+-+-++|+.+|+|+-+.....-..+. ++ .++.+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~-~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLN-SLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCS-TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccC-CchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 566888999999999999999999999999853 23222 223588899999999999766655555555 53 47899
Q ss_pred HHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhcC
Q 026992 168 VIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCG 202 (229)
Q Consensus 168 ~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~~ 202 (229)
++..||+..|..|+|++. +++..|..+++.....
T Consensus 154 ELN~LE~eFL~lLdf~L~-V~~ee~~~cy~E~~~~ 187 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRII-PRDHNITLCSIEQKQK 187 (293)
T ss_dssp HHHHHHHHHHHTTTTCCS-CCTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCCcee-eCHHHHHHHHHHHhhc
Confidence 999999999999999997 5577788877776543
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.32 E-value=1.1e-06 Score=78.31 Aligned_cols=112 Identities=11% Similarity=0.075 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcH
Q 026992 88 LDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFEN 166 (229)
Q Consensus 88 ~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~ 166 (229)
......|-+++..++++..+.-.|..++.++.....+...+. ..+++||+++|+|.++. +-.+.++. +.+ .+.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~---e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~ 200 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSM---ESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKT 200 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCH---HHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCH---HHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCH
Confidence 446667889999999999999999999999999887766665 89999999999999875 55677776 544 678
Q ss_pred HHHHHHHHHHHHHcCCc------------ccCCChHHHHHHHHHHhcCCCC
Q 026992 167 KVIQRMELLVLSTLDWK------------MGSITPFAFLHYFMIKLCGECR 205 (229)
Q Consensus 167 ~~i~~mE~~IL~~L~w~------------l~~pTp~~Fl~~~l~~l~~~~~ 205 (229)
++|-+..+.|.+.|+.. +....|.+|+..|...|+.+..
T Consensus 201 keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~ 251 (345)
T 4bbr_M 201 KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ 251 (345)
T ss_dssp THHHHHHHHHHHCC-------------------------------------
T ss_pred HHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH
Confidence 89999999999999974 7788999999999999987544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.49 E-value=0.011 Score=47.78 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHH
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQ 170 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~ 170 (229)
++|...+..++++.++...|..++.+.....-....++ ..+|+||+++|+++.... ....++. +++ .+..+|.
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P---~~iAaAaly~A~~~~~~~-~t~~ei~~~~~--vs~~ti~ 183 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSP---AGLVAAALYIASLLEGEK-RTQREVAEVAR--VTEVTVR 183 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCH---HHHHHHHHHHHHHHTTCC-CCHHHHHHHHT--CCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCH---HHHHHHHHHHHHHHhCCC-CCHHHHHHHhC--CCHHHHH
Confidence 47778889999999999999999999998766666777 999999999999997642 3455555 444 6788999
Q ss_pred HHHHHHHHHcCCcc
Q 026992 171 RMELLVLSTLDWKM 184 (229)
Q Consensus 171 ~mE~~IL~~L~w~l 184 (229)
+.=..+.+.|+-++
T Consensus 184 ~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 184 NRYKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 99899999888655
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.06 E-value=0.15 Score=41.19 Aligned_cols=85 Identities=6% Similarity=0.047 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHH
Q 026992 91 IEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVI 169 (229)
Q Consensus 91 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i 169 (229)
..+|.+.+..++++.++..+|..++..-+...-....++ ..+|+||+++|+++.+.. ....++. +. ..+..+|
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P---~~IAaAaiylA~~~~~~~-~~~~~i~~~~--~v~~~tI 176 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSP---ISVAAAAIYMASQASAEK-RTQKEIGDIA--GVADVTI 176 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCH---HHHHHHHHHHHHHTSSSC-CCHHHHHHHH--TCCHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCCh---HHHHHHHHHHHHHHHCCC-CCHHHHHHHh--CCCHHHH
Confidence 346668888999999999999999999887655556677 999999999999997543 2334443 33 3567778
Q ss_pred HHHHHHHHHHcC
Q 026992 170 QRMELLVLSTLD 181 (229)
Q Consensus 170 ~~mE~~IL~~L~ 181 (229)
.+.=..+.+.++
T Consensus 177 ~~~~~~l~~~l~ 188 (207)
T 1c9b_A 177 RQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHGGGHH
T ss_pred HHHHHHHHHHHH
Confidence 777666666554
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.32 E-value=2.6 Score=34.89 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhh-cCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccc---ee-cccCCCcH
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLS-KRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSE---FQ-VDDFDFEN 166 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs-~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~---l~-~~~~~~t~ 166 (229)
.++......++.+.+...+|..++..-+. ....-...+ ..+|+||+++|+++-....|...+ .. .-+..++.
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~P---s~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKP---TVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCH---HHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCH---HHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 35556667788888888889888855442 222334556 899999999999997655443221 11 11235789
Q ss_pred HHHHHHHHHHHHHc
Q 026992 167 KVIQRMELLVLSTL 180 (229)
Q Consensus 167 ~~i~~mE~~IL~~L 180 (229)
++|...-..|++.+
T Consensus 225 ~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 225 ELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888765
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.30 E-value=1.5 Score=36.33 Aligned_cols=87 Identities=10% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCh----HHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCcc----cee-ccc-
Q 026992 92 EWIFNKRAMFGFQF----RTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALS----EFQ-VDD- 161 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~----~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~----~l~-~~~- 161 (229)
+++......++.+. +...+|..+++.-+.....-...+ ..+|+||+++|+++-....|... .-. ...
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~P---s~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEP---EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCH---HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccCh---HHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46666777777776 577788888888776655556667 89999999999999655433211 101 111
Q ss_pred -CCCcHHHHHHHHHHHHHHcC
Q 026992 162 -FDFENKVIQRMELLVLSTLD 181 (229)
Q Consensus 162 -~~~t~~~i~~mE~~IL~~L~ 181 (229)
..++.++|...-..|++...
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHh
Confidence 25889999999888887654
No 24
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=86.78 E-value=2.4 Score=37.40 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhhhcCc-cCCcchhHHHHHHHHHHHHHhhhhhcCCCCccc---ee-cccCCCcHH
Q 026992 93 WIFNKRAMFGFQFRTAYLSVDFLDRFLSKRS-IDDGKLWAIRLLSVACLSLAAKMEECQVPALSE---FQ-VDDFDFENK 167 (229)
Q Consensus 93 Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~-i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~---l~-~~~~~~t~~ 167 (229)
++......++.+.+...+|..++..-+.... .-...+ ..+|+||+++|+++-....|...+ .. .-+..++.+
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~P---s~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~ 232 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTP---PVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLE 232 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCH---HHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCH---HHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHH
Confidence 4555666778888888899888866553222 334556 899999999999997655443211 11 112357899
Q ss_pred HHHHHHHHHHHHcC
Q 026992 168 VIQRMELLVLSTLD 181 (229)
Q Consensus 168 ~i~~mE~~IL~~L~ 181 (229)
+|...-..|+..++
T Consensus 233 ~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 233 LLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=86.36 E-value=1.3 Score=36.28 Aligned_cols=80 Identities=9% Similarity=-0.029 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCC-ccceecccCCCcHHHHHH
Q 026992 93 WIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPA-LSEFQVDDFDFENKVIQR 171 (229)
Q Consensus 93 Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~-l~~l~~~~~~~t~~~i~~ 171 (229)
+|.......+++.++..+|..++..-+.....-...+ ..+|+||+++|+++.....|. ... +. .++.++|..
T Consensus 137 ~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~P---s~IAaAai~lA~~~~~~~~~~~~~~--~~--~~~~~~i~~ 209 (235)
T 1zp2_A 137 SLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHP---HQLAYAALLISCCNDENTIPKLLDL--IK--STDAFKVIL 209 (235)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCH---HHHHHHHHHHHHTSCTTHHHHHHHH--CC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCH---HHHHHHHHHHHHHhcCCCCCCCcch--hh--cCCHHHHHH
Confidence 4445555678899999999999998776655556677 899999999999985432220 011 22 566777777
Q ss_pred HHHHHHHH
Q 026992 172 MELLVLST 179 (229)
Q Consensus 172 mE~~IL~~ 179 (229)
.=..|++.
T Consensus 210 ~~~~i~~l 217 (235)
T 1zp2_A 210 CVQRIISI 217 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666664
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=84.90 E-value=2.1 Score=36.37 Aligned_cols=103 Identities=11% Similarity=0.102 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccceecccCCCcHHHHHH
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQR 171 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~~~~~~~t~~~i~~ 171 (229)
+++......++.+.++..+|..++..-+.....-...+ ..+|+||+++|+++..... ... .....++.++|..
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~P---s~IAaAaiylA~~~~~~~~---~~W-~~~~~~~~~~l~~ 231 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPP---FMIALACLHVACVVQQKDA---RQW-FAELSVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCH---HHHHHHHHHHHHHHTTCCC---HHH-HHTSCSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCH---HHHHHHHHHHHHHHcCCCh---hhH-HHHHCCCHHHHHH
Confidence 35566677778888889999999988765544444566 8899999999999865421 111 2223578889998
Q ss_pred HHHHHHHHcC-CcccCCChHHHHHHHHHHhcCC
Q 026992 172 MELLVLSTLD-WKMGSITPFAFLHYFMIKLCGE 203 (229)
Q Consensus 172 mE~~IL~~L~-w~l~~pTp~~Fl~~~l~~l~~~ 203 (229)
.=..|++... |+.. ..-.=+.-++.++..+
T Consensus 232 ~~~~il~ly~~~~~~--~~~~~~~~~~~k~~~~ 262 (285)
T 3rgf_B 232 IIRVILKLYEQWKNF--DERKEMATILSKMPKP 262 (285)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhcccC--chhhhHHHHHHhCCCC
Confidence 8888887754 3321 1223345555666544
No 27
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=80.00 E-value=0.35 Score=42.50 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhc
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEEC 149 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~ 149 (229)
++|...+..++++.++...|..++.+.....-....++ .-+|+||+++|+++...
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P---~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSP---ITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCH---HHHHHHHHHHHHHHHCC
Confidence 44556666777777777777777777765544445566 78999999999998654
No 28
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=79.84 E-value=4.7 Score=33.35 Aligned_cols=83 Identities=8% Similarity=0.074 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCChHHH----HHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCC----cccee-cccCC
Q 026992 93 WIFNKRAMFGFQFRTA----YLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPA----LSEFQ-VDDFD 163 (229)
Q Consensus 93 Wi~~v~~~~~l~~~T~----~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~----l~~l~-~~~~~ 163 (229)
|+......++.+.++. ..|..+++.-+....+-..++ ..+|+||+++|.+.....+.. ...+. ++ .
T Consensus 155 fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~P---S~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t--g 229 (254)
T 2f2c_A 155 FLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSP---GLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL--N 229 (254)
T ss_dssp SHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCH---HHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH--T
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCH---HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH--C
Confidence 4444555666666553 346677776555555555667 899999999999985222111 22332 33 3
Q ss_pred CcHHHHHHHHHHHHHHc
Q 026992 164 FENKVIQRMELLVLSTL 180 (229)
Q Consensus 164 ~t~~~i~~mE~~IL~~L 180 (229)
++.++|...=..|.+.+
T Consensus 230 ~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 230 FSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 67788887766665543
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=78.23 E-value=4.4 Score=33.63 Aligned_cols=84 Identities=7% Similarity=-0.100 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCh-HHHHHHHHHHHHhhhcCc-cCCcchhHHHHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHH
Q 026992 91 IEWIFNKRAMFGFQF-RTAYLSVDFLDRFLSKRS-IDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENK 167 (229)
Q Consensus 91 v~Wi~~v~~~~~l~~-~T~~lAv~~lDRfLs~~~-i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~ 167 (229)
.+|+......++.+. .+..+|-.+++.-+.... +-...+ ..+|+||+++|++.-+. ++....+. +++ ++.+
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~P---s~iAaAai~lA~~~~~~-~~w~~~l~~~~g--~~~~ 213 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP---SVIAGAAFHLALYTVTG-QSWPESLIRKTG--YTLE 213 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCH---HHHHHHHHHHHHHHHHS-CCSCHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCH---HHHHHHHHHHHHHHhCC-CcchHHHHHHhC--cCHH
Confidence 456666677777665 667778777777554444 445566 88999999999998654 22233333 343 6778
Q ss_pred HHHHHHHHHHHHc
Q 026992 168 VIQRMELLVLSTL 180 (229)
Q Consensus 168 ~i~~mE~~IL~~L 180 (229)
+|...=..+.+.+
T Consensus 214 ~i~~~~~~l~~~~ 226 (260)
T 2cch_B 214 SLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877666666543
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=76.48 E-value=0.52 Score=41.54 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhc
Q 026992 90 AIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEEC 149 (229)
Q Consensus 90 ~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~ 149 (229)
..++|.+.+..++++.++...|..++.+.....-....++ .-+|+||+++|+++...
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P---~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSP---ITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCCh---HHHHHHHHHHHHHHhCC
Confidence 3357777888888888888888888887776554455566 78999999999998654
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=76.03 E-value=6.7 Score=32.46 Aligned_cols=84 Identities=8% Similarity=-0.023 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCChHH----HHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCC----C-Ccccee-cc
Q 026992 91 IEWIFNKRAMFGFQFRT----AYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQV----P-ALSEFQ-VD 160 (229)
Q Consensus 91 v~Wi~~v~~~~~l~~~T----~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~----p-~l~~l~-~~ 160 (229)
.+|+......++.+.++ ..+|-.+++.-+....+-..++ ..+|+||+++|.+.-...+ + ....+. +
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~P---S~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~- 227 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPA---SIISAAGCALLVPANVIPQDTHSGGVVPQLASI- 227 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCH---HHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCH---HHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-
Confidence 34555566666766654 2456777776665555555666 8899999999999865321 1 112222 2
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q 026992 161 DFDFENKVIQRMELLVLST 179 (229)
Q Consensus 161 ~~~~t~~~i~~mE~~IL~~ 179 (229)
..++.++|...=..|.+.
T Consensus 228 -t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 228 -LGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp -HTCCHHHHHHHHHHHHHH
T ss_pred -HCcCHHHHHHHHHHHHHH
Confidence 246777777766665554
No 32
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=73.16 E-value=6.1 Score=33.03 Aligned_cols=55 Identities=9% Similarity=0.063 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhc
Q 026992 92 EWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEEC 149 (229)
Q Consensus 92 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~ 149 (229)
+++...+...+.+.++..+|-.+++.-+....+-...+ ..+|+||+++|.+.-+.
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~P---s~iAaAai~lA~~~l~~ 194 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPP---SQIAAGAFSLALKILDN 194 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCT---THHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCH---HHHHHHHHHHHHHHhCC
Confidence 46666677778888888889999988876666666667 88999999999998654
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=67.71 E-value=24 Score=28.88 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc---CccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccceecccCCCc
Q 026992 89 DAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSK---RSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFE 165 (229)
Q Consensus 89 ~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfLs~---~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~~~~~~~t 165 (229)
.+.+-|..++++-+++..++--||.+--.|.-. .+...++. +-+|+||++||+---. +|.++.++..-|....
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q---~dVAAAc~miAae~~~-~PiplaE~r~lD~sL~ 89 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQ---PDVAAACLMIAAEEAQ-QPLPLAEVRCLDSSLG 89 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCH---HHHHHHHHHHHHHHTT-CCCCHHHHHHHCTTCC
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccccccc---HHHHHHHHHHHHHHcC-CCccHHHHHHHhhhhh
Confidence 456667889999999999999999999888864 34455666 9999999999986433 3445666653333333
Q ss_pred HHHHHHHHHHHHHHcC
Q 026992 166 NKVIQRMELLVLSTLD 181 (229)
Q Consensus 166 ~~~i~~mE~~IL~~L~ 181 (229)
.-++.+.| |++.|+
T Consensus 90 Dvelrr~E--iv~~l~ 103 (260)
T 3h4c_A 90 DVELRRAD--IVRELH 103 (260)
T ss_dssp CHHHHHHH--HHHHTT
T ss_pred HHHHHHHH--HHHHcc
Confidence 33333333 455554
No 34
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=61.23 E-value=12 Score=31.99 Aligned_cols=70 Identities=7% Similarity=0.005 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCCc----ccee-cccCCCcHHHHHHHHHHHHHHcCCcc
Q 026992 110 LSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPAL----SEFQ-VDDFDFENKVIQRMELLVLSTLDWKM 184 (229)
Q Consensus 110 lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l----~~l~-~~~~~~t~~~i~~mE~~IL~~L~w~l 184 (229)
.|-++++.-+....+-...+ ..+|+||+++|.+.-+..++.. ..+. ++ .++.++|...=..|+..+.=.+
T Consensus 195 ~a~~~l~lsl~d~~~l~~~P---S~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 195 HAQTFLALCATDYTFAMYPP---SMIATGSIGAAVQGLGACSMSGDELTELLAGIT--GTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHHHHHHCGGGTTSCH---HHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhhhhhccCCH---HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444444556 7899999999999865433221 1222 23 4678888887777777665433
No 35
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=59.40 E-value=44 Score=23.68 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhhcC------ccCCcchhHHHHHHHHHHHHHhhhhhcCCCCccceecccCCCcHH
Q 026992 94 IFNKRAMFGFQFRTAYLSVDFLDRFLSKR------SIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENK 167 (229)
Q Consensus 94 i~~v~~~~~l~~~T~~lAv~~lDRfLs~~------~i~~~~~~~lqLla~acL~lAsK~eE~~~p~l~~l~~~~~~~t~~ 167 (229)
|.++|..||+.. ..-.|-.++++|=..- .++-.+| ..+.+|++.|+|.--..++..+-+..+ ..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P----~f~aaA~~~acr~~K~kVdK~KL~~~s--~lk~~ 78 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRP----LFTSAALLSACKILKLKVDKNKMVATS--GVKKA 78 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSH----HHHHHHHHHHHHHTTCCCCHHHHHHTT--CBCHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccccc----HHHHHHHHHHHHHHccCCCHHHHHHHH--CCCHH
Confidence 347888888766 7778889999998642 3445564 567889999999977765532222133 34566
Q ss_pred HHHHHHHHHHH
Q 026992 168 VIQRMELLVLS 178 (229)
Q Consensus 168 ~i~~mE~~IL~ 178 (229)
++.+.+..+-+
T Consensus 79 ~f~~l~~~~e~ 89 (95)
T 3m03_A 79 IFDRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=58.64 E-value=18 Score=30.00 Aligned_cols=51 Identities=4% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhhhcCC---C-Ccccee--ccc-CCCcHHHHHHHHHHHHHHcCCc
Q 026992 133 RLLSVACLSLAAKMEECQV---P-ALSEFQ--VDD-FDFENKVIQRMELLVLSTLDWK 183 (229)
Q Consensus 133 qLla~acL~lAsK~eE~~~---p-~l~~l~--~~~-~~~t~~~i~~mE~~IL~~L~w~ 183 (229)
..+|+||+++|.+.-+... + .....+ +.. ..++..+|...=..|+..++=.
T Consensus 201 S~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 201 SMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 6789999999998744311 1 111111 221 3467888888777777766533
No 37
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=56.77 E-value=26 Score=30.05 Aligned_cols=91 Identities=11% Similarity=-0.041 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhhhcCccCCcchhHHHHHHHHHHHHHhhhhhcCCCC-cccee-cccCCCcHHHHHHHHHHHHHHcCC
Q 026992 105 FRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPA-LSEFQ-VDDFDFENKVIQRMELLVLSTLDW 182 (229)
Q Consensus 105 ~~T~~lAv~~lDRfLs~~~i~~~~~~~lqLla~acL~lAsK~eE~~~p~-l~~l~-~~~~~~t~~~i~~mE~~IL~~L~w 182 (229)
.....+|..++..-+.....-...+ ..+|+||+++|++......|. ...+. ..+..++.+++...=..|+..+.-
T Consensus 185 ~~l~~~A~~~l~~sl~t~~~l~~~P---s~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~ 261 (323)
T 1jkw_A 185 EILRKTADDFLNRIALTDAYLLYTP---SQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKK 261 (323)
T ss_dssp HHHHHHHHHHHHHHTTSTHHHHSCH---HHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccHHHcCCH---HHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHc
Confidence 3455677777776544333333456 889999999999987665443 22222 223456667777666666555432
Q ss_pred cccCCChHHHHHHHHHHh
Q 026992 183 KMGSITPFAFLHYFMIKL 200 (229)
Q Consensus 183 ~l~~pTp~~Fl~~~l~~l 200 (229)
. ..|+. .-+..+.+++
T Consensus 262 ~-~~~~~-~~~k~i~~KL 277 (323)
T 1jkw_A 262 Y-EPPRS-EEVAVLKQKL 277 (323)
T ss_dssp C-CCCCH-HHHHHHHHHH
T ss_pred c-CCCCH-HHHHHHHHHH
Confidence 1 23333 4445554443
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=31.85 E-value=1.3e+02 Score=24.91 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhcCCCCcccee-cccCCCcHHHHHHHHHHHH
Q 026992 133 RLLSVACLSLAAKMEECQVPALSEFQ-VDDFDFENKVIQRMELLVL 177 (229)
Q Consensus 133 qLla~acL~lAsK~eE~~~p~l~~l~-~~~~~~t~~~i~~mE~~IL 177 (229)
..+|+||+++|+..+ .+. ++ .++..+|...-..++
T Consensus 202 S~iAaAai~la~~~~--------~l~~~t--g~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 202 GILAASALYHFSSSE--------LMQKVS--GYQWCDIENCVKWMV 237 (283)
T ss_dssp HHHHHHHHHHTSCHH--------HHHHHS--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChH--------HHHHHh--CCCHHHHHHHHHHHH
Confidence 668999999997522 222 33 366777776555544
No 39
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=22.29 E-value=67 Score=17.34 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 026992 166 NKVIQRMELLVLSTLDWK 183 (229)
Q Consensus 166 ~~~i~~mE~~IL~~L~w~ 183 (229)
.++|.++|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999886
No 40
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.64 E-value=88 Score=20.98 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHhc
Q 026992 162 FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLC 201 (229)
Q Consensus 162 ~~~t~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~l~ 201 (229)
-.|+..++..|| .....++|+-..|++..-.+ +...++
T Consensus 22 t~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~-La~~lg 59 (80)
T 1wh7_A 22 TKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQ-FCAETG 59 (80)
T ss_dssp CCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHH-HHHHSC
T ss_pred ccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHH-HHHHhC
Confidence 469999999999 88888999999999776543 334443
Done!