Your job contains 1 sequence.
>026993
MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQF
LKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLL
TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS
GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLENLSV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026993
(229 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089154 - symbol:EMB3123 "EMBRYO DEFECTIVE 312... 434 7.5e-41 1
TAIR|locus:2102832 - symbol:AT3G46870 species:3702 "Arabi... 143 1.8e-08 1
TAIR|locus:2184727 - symbol:VPS9B "AT5G09320" species:370... 135 1.7e-06 1
>TAIR|locus:2089154 [details] [associations]
symbol:EMB3123 "EMBRYO DEFECTIVE 3123" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0000373 "Group II intron splicing" evidence=IMP] [GO:0003723
"RNA binding" evidence=IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009658 GO:GO:0003723 EMBL:AB018114 GO:GO:0000373
UniGene:At.27365 UniGene:At.70371 EMBL:AY600581 EMBL:AY924778
IPI:IPI00529937 RefSeq:NP_189412.1 ProteinModelPortal:Q9LVW6
PaxDb:Q9LVW6 PRIDE:Q9LVW6 EnsemblPlants:AT3G27750.1 GeneID:822397
KEGG:ath:AT3G27750 TAIR:At3g27750 eggNOG:NOG304608
HOGENOM:HOG000237520 InParanoid:Q9LVW6 OMA:RCGPRDN PhylomeDB:Q9LVW6
ProtClustDB:CLSN2685032 ArrayExpress:Q9LVW6 Genevestigator:Q9LVW6
Uniprot:Q9LVW6
Length = 222
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 104/217 (47%), Positives = 134/217 (61%)
Query: 1 MATSLHSNLTFLPS-HHSPKHKPTIITTHHR-LPIRCGPRSNRGPLVKGRILSTEAIQAV 58
MA SL T PS HS H ++I + IRCGPR NRGPL+KGRILSTEAIQ++
Sbjct: 1 MALSLSQ--TRPPSLSHS--HTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSI 56
Query: 59 QFLKRAHKQNPQ-NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDL 117
Q LKRAH+ + T L RLIK DL++ LREL+RQ C +AVHV ST++ EY DL
Sbjct: 57 QSLKRAHRTGVSLSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDL 116
Query: 118 GLLTDLINTLAKNGLTGEVDXXXXXXXXXXXXXXXXX-SRVVRAVVEAGSKESTVRIYGL 176
L D++N L +N E+D ++++RAVV A +ES VR+Y L
Sbjct: 117 VLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGAERRESVVRVYTL 176
Query: 177 MKRSGVGC-SWKVDEYVGKVLSKGLRRFGEEELANEV 212
M+ SG G SW+ DEYV +VLSKGL R GE +LA++V
Sbjct: 177 MRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQV 213
>TAIR|locus:2102832 [details] [associations]
symbol:AT3G46870 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IDA]
InterPro:IPR002885 GO:GO:0009507 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0008270 PROSITE:PS51375
TIGRFAMs:TIGR00756 EMBL:AL096859 Pfam:PF13041 EMBL:AK117833
EMBL:BT005267 IPI:IPI00542606 PIR:T12961 RefSeq:NP_190271.1
UniGene:At.35875 ProteinModelPortal:Q9STF9 PaxDb:Q9STF9
PRIDE:Q9STF9 EnsemblPlants:AT3G46870.1 GeneID:823840
KEGG:ath:AT3G46870 TAIR:At3g46870 eggNOG:NOG239626
HOGENOM:HOG000244234 InParanoid:Q9STF9 OMA:FHDGRPR PhylomeDB:Q9STF9
ProtClustDB:CLSN2685138 Genevestigator:Q9STF9 Uniprot:Q9STF9
Length = 257
Score = 143 (55.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 52/181 (28%), Positives = 87/181 (48%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + + + + + RL+K D+LA + EL RQ E
Sbjct: 63 RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDXXXXXXXXXXXX-XXXXXS 155
A+A+ +F IQ+ E+ Q D+ + DLI +LAK+ E +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + G + +Y M +S +E +VL KGL L N+V+++
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPD----PPEELPFRVLLKGL--LPHPLLRNKVKKD 236
Query: 216 F 216
F
Sbjct: 237 F 237
>TAIR|locus:2184727 [details] [associations]
symbol:VPS9B "AT5G09320" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006810 "transport" evidence=ISS]
Pfam:PF02204 EMBL:CP002688 EMBL:AL391712 InterPro:IPR003123
PROSITE:PS51205 InterPro:IPR013995 SMART:SM00167 IPI:IPI00543083
RefSeq:NP_196494.1 UniGene:At.32529 ProteinModelPortal:Q9FY83
SMR:Q9FY83 EnsemblPlants:AT5G09320.1 GeneID:830791
KEGG:ath:AT5G09320 TAIR:At5g09320 HOGENOM:HOG000152589
InParanoid:Q9FY83 OMA:FASNTED PhylomeDB:Q9FY83
ProtClustDB:CLSN2916871 ArrayExpress:Q9FY83 Genevestigator:Q9FY83
Uniprot:Q9FY83
Length = 712
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 79 RLIKHDLLAALRELIRQGECAVAVHVFSTIQREY-QQQDLGLLTDLINTLAKNGLTGEVD 137
RL+K D++A LREL+RQ EC++A+ VF I++EY + + + TD+I +A N L EV+
Sbjct: 551 RLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVN 610
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 229 212 0.00083 112 3 11 22 0.37 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 594 (63 KB)
Total size of DFA: 164 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.65u 0.07s 16.72t Elapsed: 00:00:06
Total cpu time: 16.65u 0.07s 16.72t Elapsed: 00:00:06
Start: Mon May 20 19:28:13 2013 End: Mon May 20 19:28:19 2013