BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026993
(229 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359482912|ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
gi|297743240|emb|CBI36107.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 161/236 (68%), Gaps = 17/236 (7%)
Query: 1 MATS-LHSNLTFLPSHHSPKHKPT-IITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAV 58
MA+S LHSN SP KP ITT PIRCGPR NRGPL+KGR+LS EAIQA+
Sbjct: 1 MASSALHSNFALF----SPIKKPVQTITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAI 56
Query: 59 QFLKRAHKQNP---QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQ 114
Q LKRAH+ +P + +LSRL+K DLLA L EL+RQ +C +A+ VFS ++ E + +
Sbjct: 57 QSLKRAHRGDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYK 116
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG---DGRGLSRVVRAVVEAGSKESTV 171
+L L DL++ LA+ G+ E+DRLI +LE +G D +G+ R+V+AV+ A ++STV
Sbjct: 117 TELSLYADLVSALARKGMKEEIDRLICDLEG-EGSVRCDDKGIVRLVKAVIAAERRDSTV 175
Query: 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLENL 227
RIYGLMKRSG G DEYVG+VLS+GLRR GE +A+EV+ EF + G+LE +
Sbjct: 176 RIYGLMKRSGCGGG---DEYVGRVLSRGLRRLGELGVADEVDLEFGRLSKGNLEKV 228
>gi|449448168|ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449491766|ref|XP_004158997.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 230
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 19/229 (8%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITT--HHRLPIRCGPRSNRGPLVKGRILSTEAIQAV 58
MA+SLHS TFL S S + T+ +RCGPR NRGPLVKGR LS EAIQA+
Sbjct: 1 MASSLHS--TFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAI 58
Query: 59 QFLKRAHKQNP---QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQ 115
Q LKRA + +P Q +LSRL+K DL+A L+EL+RQ CA+A+ VF+ I+ EY+ +
Sbjct: 59 QSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAE 118
Query: 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG--------RGLSRVVRAVVEAGSK 167
LGL ++ L++NG E+DRL+ +L DGGDG +GL ++++AV+ +
Sbjct: 119 -LGLYAEVAAALSRNGAAEEIDRLVSDL---DGGDGVIEWGDDDKGLIKLIKAVISGNRR 174
Query: 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
ESTVRIY +M+R G G K D+Y+ KVLSKGLRR GE ELA+E+ REF
Sbjct: 175 ESTVRIYRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREF 223
>gi|297815036|ref|XP_002875401.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
gi|297321239|gb|EFH51660.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
Length = 220
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 138/194 (71%), Gaps = 4/194 (2%)
Query: 23 TIITTHHRL-PIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL 80
+++ RL IRCGPR NRGPL+KGRILSTEAIQ++Q LKRAH+ + T L RL
Sbjct: 18 SVVVPKRRLVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGSSISLTLRPLRRL 77
Query: 81 IKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLI 140
IK DL++ LREL+RQ C +AVHV ST++ EY DL L D++N L++N E+DRLI
Sbjct: 78 IKSDLVSVLRELLRQDYCTLAVHVLSTLRSEYPPLDLVLYADIVNALSRNKEFDEIDRLI 137
Query: 141 GELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGC-SWKVDEYVGKVLSK 198
GE+E ID D + L++++RAVV A +ES VR+Y L++ SG G SW+ DEYV +VLSK
Sbjct: 138 GEIEIIDQRSDDKALAKLIRAVVGAERRESVVRVYTLLRESGWGSESWEADEYVAEVLSK 197
Query: 199 GLRRFGEEELANEV 212
GL R GE++LA +V
Sbjct: 198 GLLRLGEQDLAAQV 211
>gi|15232255|ref|NP_189412.1| uncharacterized protein [Arabidopsis thaliana]
gi|9294480|dbj|BAB02699.1| unnamed protein product [Arabidopsis thaliana]
gi|49660179|gb|AAT68380.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|60547779|gb|AAX23853.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|332643839|gb|AEE77360.1| uncharacterized protein [Arabidopsis thaliana]
Length = 222
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 142/215 (66%), Gaps = 5/215 (2%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQF 60
MA SL T PS I+ + IRCGPR NRGPL+KGRILSTEAIQ++Q
Sbjct: 1 MALSLSQ--TRPPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQS 58
Query: 61 LKRAHKQNPQ-NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGL 119
LKRAH+ + T L RLIK DL++ LREL+RQ C +AVHV ST++ EY DL L
Sbjct: 59 LKRAHRTGVSLSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVL 118
Query: 120 LTDLINTLAKNGLTGEVDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMK 178
D++N L +N E+DRLIGE++ ID D + L++++RAVV A +ES VR+Y LM+
Sbjct: 119 YADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGAERRESVVRVYTLMR 178
Query: 179 RSGVGC-SWKVDEYVGKVLSKGLRRFGEEELANEV 212
SG G SW+ DEYV +VLSKGL R GE +LA++V
Sbjct: 179 ESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQV 213
>gi|356528924|ref|XP_003533047.1| PREDICTED: uncharacterized protein LOC100788379 [Glycine max]
Length = 238
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 149/226 (65%), Gaps = 15/226 (6%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHH--RLPIRCG-PRSNRGPLVKGRILSTEAIQA 57
MA SL N TFL K +P+ TT + +RCG PRS+R PLVKGRILS EAIQA
Sbjct: 1 MALSLFQNPTFL----KLKPQPSTATTPRWGYVRVRCGGPRSHRTPLVKGRILSIEAIQA 56
Query: 58 VQFLKRAHKQNPQNPTY---PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+Q LKR H+ NP T +L+RLIK DLLA LREL+RQ C +A+ VFST++ EY
Sbjct: 57 IQTLKRLHRTNPPELTSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRVFSTLRSEYGA 116
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGEL---EEIDGGDG-RGLSRVVRAVVEAGSKEST 170
DL L ++ TLA N +T +DRLI +L EI GD +GL+ +++AVV A S+EST
Sbjct: 117 -DLSLYAEMAQTLAANDMTDHLDRLILDLASENEIKCGDDHKGLASLIKAVVAARSREST 175
Query: 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
VRIYGLM +SG G + DEYV +VL GL+ FGEE LA E++ E+
Sbjct: 176 VRIYGLMNKSGYGSVTEPDEYVVEVLVSGLKSFGEEALAKELQHEY 221
>gi|356523014|ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799612 [Glycine max]
Length = 240
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 148/230 (64%), Gaps = 21/230 (9%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHH--RLPIRCG-PRSNRGPLVKGRILSTEAIQA 57
MA SL N TFL K KP I T + +RCG PRS R PL+KGRILS EAIQA
Sbjct: 1 MAFSLFQNPTFL------KLKPPTIATPRWGYVRVRCGGPRSQRSPLMKGRILSIEAIQA 54
Query: 58 VQFLKRAHKQNPQNPTY---PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+Q LKR H+ NP N + +L+RLIK DLLA LREL+RQ C +A+ FST++ EY
Sbjct: 55 IQTLKRLHRTNPPNLSSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRAFSTLRSEYGA 114
Query: 115 QDLGLLTDLINTLAKNG----LTGEVDRLIGELE----EIDGGDGRGLSRVVRAVVEAGS 166
DL L ++I+ LA +T VDRLI +LE EI D +GL+ +++AVV A S
Sbjct: 115 -DLSLYAEIISALAAAAAAAEMTDHVDRLILDLEAENEEIKCDDHKGLASLIKAVVAARS 173
Query: 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
+ESTVRIYGLMK+SG G + DEYV KVL GL+ FGEE LA E++ E+
Sbjct: 174 RESTVRIYGLMKKSGYGSVTEPDEYVVKVLVNGLKSFGEEALARELQDEY 223
>gi|357513379|ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
gi|355521000|gb|AET01454.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
Length = 239
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 146/227 (64%), Gaps = 13/227 (5%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCG-PRSNRGPLVKGRILSTEAIQAVQ 59
MA+SLH N TF+ H SP KP+ T +P+ CG PRS RGPL+KGR LS EAIQA+Q
Sbjct: 1 MASSLHQNPTFIKPHSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQ 60
Query: 60 FLKRAHKQNPQNPTYPS-----LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
LKR ++ NPQ T L+RLIK DL+A L+EL+RQ + +A+ VFS ++ EY
Sbjct: 61 TLKRINRINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRSEYGA 120
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-----DGRGLSRVVRAVVEAGSKES 169
DL L +++ L G+ +VDRLI E+E + GG D +G+ +++AV+ A ++
Sbjct: 121 -DLTLYAEMLKVLGNCGMYEDVDRLIEEIE-VGGGIGCDEDPKGVLSLIKAVIGAKRRDL 178
Query: 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
VR+Y ++KRSG G + DEYV KVLS G + FG++ELA E+ ++
Sbjct: 179 LVRVYEMLKRSGWGEVVEFDEYVVKVLSNGFKGFGDDELAQEILNDY 225
>gi|224074009|ref|XP_002304213.1| predicted protein [Populus trichocarpa]
gi|222841645|gb|EEE79192.1| predicted protein [Populus trichocarpa]
Length = 190
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 6/187 (3%)
Query: 32 PIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRA-HKQNPQNPTYPSLSRLIKHDLLAALR 90
PIRCGPRS RGPLV+GRILSTEAI A+Q LKRA + ++ + P+L+R+I+ DLL+ +R
Sbjct: 4 PIRCGPRSKRGPLVRGRILSTEAILAIQSLKRADNNKSESSKKLPNLARMIRSDLLSIIR 63
Query: 91 ELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEE---- 145
EL+RQ C++A+ V ST++ EY Q DL L D+I L++N ++DRLI +LEE
Sbjct: 64 ELLRQDLCSLALQVLSTLRSEYPGQIDLNLYADVIFALSRNKCFDDIDRLIDDLEEGESW 123
Query: 146 IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205
+ G RGL RVVR +VEA KESTVRI G+++RSG G +W DEYV KVL +GL+ GE
Sbjct: 124 VKWGSDRGLLRVVRGLVEARRKESTVRICGMLRRSGCGDTWTTDEYVVKVLRRGLKEMGE 183
Query: 206 EELANEV 212
E+A+EV
Sbjct: 184 IEMASEV 190
>gi|388505356|gb|AFK40744.1| unknown [Medicago truncatula]
Length = 263
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 134/212 (63%), Gaps = 13/212 (6%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCG-PRSNRGPLVKGRILSTEAIQAVQ 59
MA+SLH N TF+ H SP KP+ T +P+ CG PRS RGPL+KGR LS EAIQA+Q
Sbjct: 1 MASSLHQNPTFIKPHSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQ 60
Query: 60 FLKRAHKQNP-----QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
LKR ++ NP +L+RLIK DL+A L+EL+RQ + +A+ VFS ++ EY
Sbjct: 61 TLKRINRINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRSEY-G 119
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-----DGRGLSRVVRAVVEAGSKES 169
DL L +++ L G+ +VDRLI E+ E+ GG D +G+ +++AV+ A ++
Sbjct: 120 ADLTLYAEMLKVLGNCGMYEDVDRLIEEI-EVGGGIGCDEDPKGVLSLIKAVIGAKRRDL 178
Query: 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201
VR+Y ++KRSG G + DEYV KVLS G +
Sbjct: 179 LVRVYEMLKRSGWGEVVEFDEYVVKVLSNGFK 210
>gi|224286190|gb|ACN40805.1| unknown [Picea sitchensis]
Length = 274
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 113/195 (57%), Gaps = 15/195 (7%)
Query: 30 RLPIRCGPRS---NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ---NPTYPSLSRLIKH 83
++P C R NRGPL +GRILSTEAIQAVQ L+RA K +PQ + RL+K
Sbjct: 64 QIPSVCNMRDKGQNRGPLWRGRILSTEAIQAVQALRRA-KGDPQRLEKAFATKIPRLLKK 122
Query: 84 DLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGE 142
DLLA L+EL RQ +C +A+ VF +++E + + +L L D+I L +N EV+ ++ E
Sbjct: 123 DLLAVLQELQRQDQCDLALQVFKAVRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLE 182
Query: 143 LEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200
L++ +G D R + ++ A + G ++ + + LMK++ D+ VL +GL
Sbjct: 183 LQK-EGLRPDTRVCTEIIGAFIHVGMVQNAMETFELMKQTDC----HPDKSTFTVLIQGL 237
Query: 201 RRFGEEELANEVERE 215
+R GE +LA V +
Sbjct: 238 QRLGEIDLATAVREQ 252
>gi|357127065|ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 257
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 121/236 (51%), Gaps = 31/236 (13%)
Query: 7 SNLTFLPSHHSPKHKPTI---ITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKR 63
++L FLP H +P PT+ + R I CGPR NRGPL +GR LSTEAI AVQ LKR
Sbjct: 2 ASLLFLP-HTTPA--PTLRAKLLPGPRTIITCGPRDNRGPLQRGRSLSTEAIHAVQALKR 58
Query: 64 AHKQN-----PQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDL 117
+ +L RL++ DLLAA+ EL RQG ++A+ + E + + D
Sbjct: 59 LTAADRSPPAATAAASAALGRLLRADLLAAMAELQRQGHWSLALAALHVARAEPWYRPDP 118
Query: 118 GLLTDLINTLAKNG------LTGEVDRLIGELEE-IDGGDGRG---------LSRVVRAV 161
L +++ N + V+ I E E GG G L+R+VRA+
Sbjct: 119 ELYATFVSSSPSNDPAAAAAVDALVEAFIEEKERGAAGGSSEGVWVGEDVYKLTRLVRAL 178
Query: 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217
V G + R+Y R G GC +VDEY+ +V++KG++R G +E A EVE +
Sbjct: 179 VAKGRARAAWRVYEAAVRKG-GC--EVDEYMYRVMAKGMKRLGLDEEAAEVEADLA 231
>gi|296084249|emb|CBI24637.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 118/225 (52%), Gaps = 21/225 (9%)
Query: 1 MATSLHSNLTF-LPSHHSPK----HKPTIITTHHRLPIRCGPRSN-RGPLVKGRILSTEA 54
M ++ +L F LP P+ HKP I CG R R PL + R+LSTEA
Sbjct: 1 MLCTVMGSLKFQLPQLRFPQNPQTHKPQFPK------IACGLRGGPRKPLWRSRVLSTEA 54
Query: 55 IQAVQFLKRAHKQNPQNPTYPS-LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-Y 112
IQ VQ LK A + S +SRL+K DLL L EL RQGE + + VF I++E +
Sbjct: 55 IQVVQSLKLAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEFIRKEVW 114
Query: 113 QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG--GDGRGLSRVVRAVVEAGSKEST 170
+ DL L +D+I L K L + L EL++ +G D R + ++ A ++ G E
Sbjct: 115 YKPDLSLYSDMIMILGKKKLIEMAEGLFSELKK-EGLEPDTRVYTEMIGAYLQVGMTEKA 173
Query: 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
+ +YGLMK S GC+ D+ +L + L GEEELA V++E
Sbjct: 174 MEMYGLMKAS--GCA--PDKLTLTILIRNLENAGEEELAAGVKKE 214
>gi|147788707|emb|CAN65295.1| hypothetical protein VITISV_017782 [Vitis vinifera]
Length = 303
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 112/214 (52%), Gaps = 22/214 (10%)
Query: 12 LPSHHSPK----HKPTIITTHHRLP-IRCGPRSN-RGPLVKGRILSTEAIQAVQFLKRAH 65
LP P+ HKP + P I CG R R PL + R+LSTEAIQ VQ LK A
Sbjct: 8 LPQLRFPQNPQTHKP-------QFPKIACGLRGGPRKPLWRSRVLSTEAIQVVQSLKLAK 60
Query: 66 KQNPQNPTYPS-LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDL 123
+ S +SRL+K DLL L EL RQGE + + VF I++E + + DL L +D+
Sbjct: 61 SSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEFIRKEVWYKPDLSLYSDM 120
Query: 124 INTLAKNGLTGEVDRLIGELEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181
I L K L + L EL++ +G D R + ++ A ++ G E + +YGLMK SG
Sbjct: 121 IMILGKKKLIEMAEGLFSELKK-EGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLMKASG 179
Query: 182 VGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
D+ +L + L GEEELA V++E
Sbjct: 180 CA----PDKLTLTILIRNLENAGEEELAAGVKKE 209
>gi|45183613|gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 113/222 (50%), Gaps = 30/222 (13%)
Query: 17 SPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKR-----AHKQNPQN 71
S HKP ++ I CGPR NRGPL +GR LSTEAI A+Q LKR
Sbjct: 21 SAGHKPRPVS------ITCGPRDNRGPLQRGRSLSTEAILAIQSLKRLTSADRSPAAASA 74
Query: 72 PTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKN 130
+L RL+K DL+AA+ EL RQG ++A+ + E + + D L +++ +
Sbjct: 75 AAATALGRLLKADLVAAMAELQRQGHWSLALAALHIARAEPWYRPDPALYATFVSSAPHS 134
Query: 131 GLTGE------VDRLI-GELEE-------IDG-GDGRGLSRVVRAVVEAGSKESTVRIYG 175
GE VD L+ LEE +DG D L+R++RA+V G + R+Y
Sbjct: 135 PSGGEGDAEAAVDALVEAFLEEKARGGGFVDGEEDVYKLTRLLRALVAKGRGRAAWRVYE 194
Query: 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217
R G VDEYV +V+++G++R G E A EVE +F
Sbjct: 195 AAVRKG---GLDVDEYVYRVMARGMKRLGFHEEAAEVEADFA 233
>gi|225434034|ref|XP_002272799.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Vitis vinifera]
Length = 237
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 115/218 (52%), Gaps = 17/218 (7%)
Query: 4 SLHSNLTFLPSHHSPK-HKPTIITTHHRLPIRCGPRSN-RGPLVKGRILSTEAIQAVQFL 61
SL L L +P+ HKP I CG R R PL + R+LSTEAIQ VQ L
Sbjct: 3 SLKFQLPQLRFPQNPQTHKPQFPK------IACGLRGGPRKPLWRSRVLSTEAIQVVQSL 56
Query: 62 KRAHKQNPQNPTYPS-LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGL 119
K A + S +SRL+K DLL L EL RQGE + + VF I++E + + DL L
Sbjct: 57 KLAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEFIRKEVWYKPDLSL 116
Query: 120 LTDLINTLAKNGLTGEVDRLIGELEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLM 177
+D+I L K L + L EL++ +G D R + ++ A ++ G E + +YGLM
Sbjct: 117 YSDMIMILGKKKLIEMAEGLFSELKK-EGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLM 175
Query: 178 KRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
K S GC+ D+ +L + L GEEELA V++E
Sbjct: 176 KAS--GCA--PDKLTLTILIRNLENAGEEELAAGVKKE 209
>gi|162462012|ref|NP_001105250.1| thylakoid assembly8 [Zea mays]
gi|45183621|gb|AAS55479.1| Tha8 [Zea mays]
gi|413947428|gb|AFW80077.1| thylakoid assembly8 [Zea mays]
Length = 263
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 30/222 (13%)
Query: 17 SPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKR-----AHKQNPQN 71
S HKP ++ I CGPR NRGPL +GR LSTEAI A+Q LKR
Sbjct: 21 SAGHKPRPVS------ITCGPRDNRGPLQRGRSLSTEAILAIQSLKRLTSADRSPAAASA 74
Query: 72 PTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKN 130
+L RL+K DL+AA+ EL RQG ++A+ + E + + D L +++ +
Sbjct: 75 AAATALGRLLKADLVAAMAELQRQGHWSLALAALHIARAEPWYRPDPALYATFVSSAPHS 134
Query: 131 GLTGE------VDRLIGEL--EEIDGG-------DGRGLSRVVRAVVEAGSKESTVRIYG 175
GE VD L+ E+ GG D L+R++RA+V G + R+Y
Sbjct: 135 PSGGEGDAEAAVDALVEAFLEEKASGGGFVDGEEDVYKLTRLLRALVAKGRGRAAWRVYE 194
Query: 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217
R G VD YV +V+++G++R G +E A EVE +F
Sbjct: 195 AAVRKG---GLNVDAYVYRVMARGMKRLGFQEEAAEVEEDFA 233
>gi|125524506|gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 109/209 (52%), Gaps = 29/209 (13%)
Query: 13 PSHHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNP 72
P S + P IT CGPR NRGPL +GR LSTEAI AVQ LKR + ++P
Sbjct: 20 PGRRSARPTPASIT--------CGPRDNRGPLQRGRSLSTEAILAVQSLKRLTSSD-RSP 70
Query: 73 TY------PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLIN 125
SL RL+K DLLAA+ EL RQG ++A+ + E + + D L ++
Sbjct: 71 AAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPALYATFVS 130
Query: 126 TL-AKNGLTGEVDRLI-GELEEIDGGDG--------RGLSRVVRAVVEAGSKESTVRIYG 175
+ A VD L+ LEE + G G L+R+VRA+V G + R+Y
Sbjct: 131 SSPATEDGAAAVDALVEAFLEEKERGGGFVDGEEDVYKLTRLVRALVAKGRARAAWRVYE 190
Query: 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204
R G GC +VDEY+ +V+++G++R G
Sbjct: 191 AAVRMG-GC--EVDEYMYRVMARGMKRLG 216
>gi|115434634|ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product [Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa Japonica Group]
gi|113531606|dbj|BAF03989.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 109/209 (52%), Gaps = 29/209 (13%)
Query: 13 PSHHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNP 72
P S + P IT CGPR NRGPL +GR LSTEAI AVQ LKR + ++P
Sbjct: 20 PGRRSARPTPASIT--------CGPRDNRGPLQRGRSLSTEAILAVQSLKRLTSSD-RSP 70
Query: 73 TY------PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLIN 125
SL RL+K DLLAA+ EL RQG ++A+ + E + + D L ++
Sbjct: 71 AAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPALYATFVS 130
Query: 126 TL-AKNGLTGEVDRLI-GELEEIDGGDG--------RGLSRVVRAVVEAGSKESTVRIYG 175
+ A VD L+ LEE + G G L+R+VRA+V G + R+Y
Sbjct: 131 SSPATEDGAAAVDALVEAFLEEKERGGGFVDGEEDVYKLTRLVRALVAKGRARAAWRVYE 190
Query: 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204
R G GC +VDEY+ +V+++G++R G
Sbjct: 191 AAVRMG-GC--EVDEYMYRVMARGMKRLG 216
>gi|449454430|ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449473007|ref|XP_004153757.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449517150|ref|XP_004165609.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 106/188 (56%), Gaps = 20/188 (10%)
Query: 28 HHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPS-LSRLIKHDL 85
+ R+ +R G NR PL KGR LS EAIQAVQ LKR K Q + Y S + RL+K D+
Sbjct: 37 YPRVTMRGGS-ENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDM 95
Query: 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELE 144
LA LREL+RQ EC++A+ VF +++E + + + L D+I LA NGL V ++ ++
Sbjct: 96 LAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMK 155
Query: 145 -------EIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197
EIDG + +++A+V E + Y LMK VGC + D+ +++
Sbjct: 156 AEADLAPEIDGFNA-----LLKALVSHNLGELAMESYYLMK--DVGC--EPDKASFRIVI 206
Query: 198 KGLRRFGE 205
KGL GE
Sbjct: 207 KGLESKGE 214
>gi|242076196|ref|XP_002448034.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
gi|241939217|gb|EES12362.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
Length = 216
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 17/180 (9%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRAHKQN-PQNPTY----PSLSRLIKHDLLAALRELIR 94
NR P +GR LSTEAIQAVQ LKRA +++ P T P L RL+K D++A REL
Sbjct: 7 NRKPTQRGRYLSTEAIQAVQSLKRAARRSAPSASTAATVEPKLRRLLKTDMVAVFRELAA 66
Query: 95 QGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGDG 151
QGE +A VF I++E + + L DL+ LA GL EVDR L E+++ D
Sbjct: 67 QGEALLAFQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRIEVDRACSYLKKEQLE-PDT 125
Query: 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEELA 209
G + +++ +++AG + T+ + LMK W D L KGL G+ EL+
Sbjct: 126 EGFNLLLKELLDAGFTQLTMDCFRLMK------LWDSDPDRITYTTLIKGLESLGKMELS 179
>gi|255578900|ref|XP_002530303.1| ATP binding protein, putative [Ricinus communis]
gi|223530159|gb|EEF32070.1| ATP binding protein, putative [Ricinus communis]
Length = 244
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 15/219 (6%)
Query: 4 SLHSNLTFLPS---HHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQF 60
SL F P PK P T+ +R GPR PL + + +STEAIQA+Q
Sbjct: 3 SLKFKFQFPPPLRIFQIPKT-PNFKTSFVTCSLRGGPRK---PLWRSKRVSTEAIQAIQS 58
Query: 61 LKRAHKQNPQ--NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDL 117
LK A NP+ LSRL+K DLL L L +Q E +A+ VF +Q+E + + DL
Sbjct: 59 LKLAKSSNPRLHQVFNTKLSRLLKTDLLDVLEILQKQNELDLALKVFEFVQKEIWYKPDL 118
Query: 118 GLLTDLINTLAKNGLTGEVDRLIGELE-EIDGGDGRGLSRVVRAVVEAGSKESTVRIYGL 176
L +I L KN +T + +LE E D R + ++ A ++ G+ E + +YG
Sbjct: 119 TLYYGMIEMLGKNKMTEMAEGYFSKLEKEGLKPDTRAFNEMIGAYLKVGTTEKAMEMYGR 178
Query: 177 MKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
MK S GC D+ +L + L G +L + +++E
Sbjct: 179 MKES--GCV--PDKLTFVILIRNLEEAGRNDLVDIIKKE 213
>gi|38344476|emb|CAE05491.2| OSJNBa0022H21.11 [Oryza sativa Japonica Group]
Length = 257
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRA------HKQNPQNPTYPSLSRLIKHDLLAALRELI 93
NR P +GR LSTEAIQAVQ LKRA P P L RL+K D++A REL
Sbjct: 36 NRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFRELA 95
Query: 94 RQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGD 150
QGE +A+ VF I++E + + L L D++ LA GL EVD++ L E+++ D
Sbjct: 96 AQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKREQLE-PD 154
Query: 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEEL 208
G + +++A+++A + T+ + LMK W D + L KGL GE L
Sbjct: 155 TEGFNVLLKALLDAEFTQLTMDCFRLMK------LWDSDPDRITYRTLIKGLESLGEMGL 208
Query: 209 ANEVERE 215
+ +++ E
Sbjct: 209 SADIKLE 215
>gi|116310293|emb|CAH67311.1| OSIGBa0106G07.7 [Oryza sativa Indica Group]
Length = 259
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRA------HKQNPQNPTYPSLSRLIKHDLLAALRELI 93
NR P +GR LSTEAIQAVQ LKRA P P L RL+K D++A REL
Sbjct: 38 NRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFRELA 97
Query: 94 RQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGD 150
QGE +A+ VF I++E + + L L D++ LA GL EVD++ L E+++ D
Sbjct: 98 AQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKREQLE-PD 156
Query: 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEEL 208
G + +++A+++A + T+ + LMK W D + L KGL GE L
Sbjct: 157 TEGFNVLLKALLDAEFTQLTMDCFRLMK------LWDSDPDRITYRTLIKGLESIGEMGL 210
Query: 209 ANEVERE 215
+ +++ E
Sbjct: 211 SADIKLE 217
>gi|115458948|ref|NP_001053074.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|113564645|dbj|BAF14988.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|125590727|gb|EAZ31077.1| hypothetical protein OsJ_15174 [Oryza sativa Japonica Group]
Length = 228
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRA------HKQNPQNPTYPSLSRLIKHDLLAALRELI 93
NR P +GR LSTEAIQAVQ LKRA P P L RL+K D++A REL
Sbjct: 7 NRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFRELA 66
Query: 94 RQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGD 150
QGE +A+ VF I++E + + L L D++ LA GL EVD++ L E+++ D
Sbjct: 67 AQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKREQLE-PD 125
Query: 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEEL 208
G + +++A+++A + T+ + LMK W D + L KGL GE L
Sbjct: 126 TEGFNVLLKALLDAEFTQLTMDCFRLMK------LWDSDPDRITYRTLIKGLESLGEMGL 179
Query: 209 ANEVERE 215
+ +++ E
Sbjct: 180 SADIKLE 186
>gi|125548701|gb|EAY94523.1| hypothetical protein OsI_16297 [Oryza sativa Indica Group]
Length = 228
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRA------HKQNPQNPTYPSLSRLIKHDLLAALRELI 93
NR P +GR LSTEAIQAVQ LKRA P P L RL+K D++A REL
Sbjct: 7 NRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFRELA 66
Query: 94 RQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGD 150
QGE +A+ VF I++E + + L L D++ LA GL EVD++ L E+++ D
Sbjct: 67 AQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKREQLE-PD 125
Query: 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEEL 208
G + +++A+++A + T+ + LMK W D + L KGL GE L
Sbjct: 126 TEGFNVLLKALLDAEFTQLTMDCFRLMK------LWDSDPDRITYRTLIKGLESIGEMGL 179
Query: 209 ANEVERE 215
+ +++ E
Sbjct: 180 SADIKLE 186
>gi|414586768|tpg|DAA37339.1| TPA: hypothetical protein ZEAMMB73_755953 [Zea mays]
Length = 209
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 17/180 (9%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNPTY-----PSLSRLIKHDLLAALRELIR 94
NR P +GR LSTEAIQAVQ LKRA + + P L RL+K D++A REL
Sbjct: 7 NRKPTQRGRYLSTEAIQAVQSLKRAALRGAPAASAAAVVEPKLRRLLKADMVAVFRELAA 66
Query: 95 QGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGDG 151
QGE +A+ VF I++E + + L DL+ LA GL EVDR L E+++ D
Sbjct: 67 QGEALLALQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRTEVDRACSYLKREQLE-PDT 125
Query: 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEELA 209
G + +++A++++G + T+ + LMK W D L KGL G+ EL+
Sbjct: 126 EGFNLLLKALLDSGFTQLTLDCFRLMK------LWDSDPDRITYTTLIKGLESLGKMELS 179
>gi|326488207|dbj|BAJ89942.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 17/220 (7%)
Query: 5 LHSNLTFLPSHHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRA 64
L S L F P +P +T + +R + NR P +GR LSTEAIQAVQ LKRA
Sbjct: 2 LSSPLAFSPHRLTPSAASVRRSTSSTITMRDRGK-NRKPTQRGRYLSTEAIQAVQSLKRA 60
Query: 65 HKQNPQNP----TYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGL 119
T P L RL+K D++A REL QGE +A+ VF I++E + + L
Sbjct: 61 TLSGAPAAGAVATDPKLRRLLKADMVAVFRELAAQGEAHLALKVFEEIRKEHWYKPRLFW 120
Query: 120 LTDLINTLAKNGLTGEVDRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLM 177
DLI LA GL EV + L E+++ D G + +++ +++A + T+ + LM
Sbjct: 121 YVDLITVLASKGLRSEVGKACSYLKREQLE-PDTDGFNLLLKTLLDAEFTQLTMDCFRLM 179
Query: 178 KRSGVGCSW--KVDEYVGKVLSKGLRRFGEEELANEVERE 215
K W + D L KGL GE +L+ ++ E
Sbjct: 180 KL------WDSEPDRTTYITLVKGLESLGEMDLSAKMRLE 213
>gi|224102763|ref|XP_002312792.1| predicted protein [Populus trichocarpa]
gi|222849200|gb|EEE86747.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 98/194 (50%), Gaps = 10/194 (5%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ--NPTYPS-LSRLIKHDLLAALRELIRQG 96
NR PL KGR LS EAIQ +Q LK A+ + + + S SRL+K D+ A LREL+RQ
Sbjct: 15 NRKPLQKGRNLSIEAIQTIQALKLAYNNDKSLLDQVFRSKFSRLLKFDMTAVLRELLRQN 74
Query: 97 ECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRG-- 153
C +A+ VF I+ E + + + L D+I +A NG EV L LE GD +
Sbjct: 75 HCLLALKVFEDIRVEHWYKPKVLLYNDMIQVMASNGFIEEVQLLFRYLESEITGDLQFKT 134
Query: 154 --LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211
++++ ++ + Y MK VGC + D K+L GL GE EL+
Sbjct: 135 DEFNQLLATLISFKLGGLVMECYEWMKSVVVGC--EPDRSTFKLLVNGLESIGEFELSVV 192
Query: 212 VEREFCWVPGGSLE 225
V ++ G SL+
Sbjct: 193 VRQDAYKFYGESLD 206
>gi|297811021|ref|XP_002873394.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
gi|297319231|gb|EFH49653.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
Length = 745
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 19/198 (9%)
Query: 33 IRCGPRS-NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNPT-----------YPSLSRL 80
I+ RS NR PL +GR+LS EAIQAVQ LKRA+ P RL
Sbjct: 526 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPSPSSSSALVDRVIISKFRRL 585
Query: 81 IKHDLLAALRELIRQGECAVAVHVFSTIQREY-QQQDLGLLTDLINTLAKNGLTGEVDRL 139
+K D++A LREL+RQ EC++A+ VF I++EY + + + TD+I +A N L EV+ L
Sbjct: 586 LKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYL 645
Query: 140 IGELEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197
++ G D + ++ ++ + + Y M+ G ++ D ++L
Sbjct: 646 YSAMKSEKGLMADIEWFNTLLTILLNHKLFDLVMDCYAFMQSIG----YEPDRASFRILV 701
Query: 198 KGLRRFGEEELANEVERE 215
GL GE L+ V ++
Sbjct: 702 LGLESNGEMSLSAIVRKD 719
>gi|21618227|gb|AAM67277.1| unknown [Arabidopsis thaliana]
Length = 262
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 31 LPIRCGPRS-NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNPT---------------- 73
+ I+ RS NR PL +GR+LS EAIQAVQ LKRA+ P P
Sbjct: 35 MVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPAPVPSTSTTSSSSALLDRV 94
Query: 74 -YPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNG 131
RL+K D++A LREL+RQ EC++A+ VF I++EY + + + TD+I +A N
Sbjct: 95 IISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNS 154
Query: 132 LTGEVDRLIGELEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD 189
L EV+ L ++ G + + ++ ++ + + Y M+ G ++ D
Sbjct: 155 LMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIG----YEPD 210
Query: 190 EYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225
+VL GL GE L+ V ++ G SLE
Sbjct: 211 RASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLE 246
>gi|255546690|ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
gi|223546501|gb|EEF48000.1| conserved hypothetical protein [Ricinus communis]
Length = 248
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 36 GPRSNRGPLVKGRILSTEAIQAVQFLKRAH----KQNPQNPTYPSLSRLIKHDLLAALRE 91
G NR L KGR LS E+IQAVQ LKRA+ N + SRL+K D+L+ LRE
Sbjct: 46 GKEDNRKQLQKGRNLSIESIQAVQSLKRAYYFSTNSNLDSVFRSKFSRLLKLDMLSVLRE 105
Query: 92 LIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELE---EID 147
L+RQ C +A+ VF I++EY + + L D+I +A NG +V+ L L+ +
Sbjct: 106 LLRQNHCLLALKVFKDIRKEYWYKPQVSLYDDMIKAMASNGYFEQVELLCIYLKTETNLI 165
Query: 148 GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205
+ + + ++ + YGLMK V C + D ++L GL GE
Sbjct: 166 EPETDAFNALFTTLITFNLSGFAMEFYGLMK--AVKC--EPDRLTFRILINGLESMGE 219
>gi|225428340|ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
Length = 246
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRAHKQNP--QNPTYPSLSRLIKHDLLAALRELIRQGE 97
NR PL +GR LS EAIQAVQ LKRA + + + RL+K D++A L++L+ Q E
Sbjct: 45 NRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLNQNE 104
Query: 98 CAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG--GDGRGL 154
C +A+ VF +++EY + + L ++I L NGL +V L+ L++ G + G
Sbjct: 105 CLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELETEGF 164
Query: 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213
+ ++R +++ + + LMK S GC + ++L KGL GE +++ V+
Sbjct: 165 NALLRTLIDFDMTGPAMECFQLMKTS--GCEPNKSSF--RILIKGLESKGELDISATVK 219
>gi|297744458|emb|CBI37720.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRAHKQNP--QNPTYPSLSRLIKHDLLAALRELIRQGE 97
NR PL +GR LS EAIQAVQ LKRA + + + RL+K D++A L++L+ Q E
Sbjct: 7 NRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLNQNE 66
Query: 98 CAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG--GDGRGL 154
C +A+ VF +++EY + + L ++I L NGL +V L+ L++ G + G
Sbjct: 67 CLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELETEGF 126
Query: 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213
+ ++R +++ + + LMK S GC + ++L KGL GE +++ V+
Sbjct: 127 NALLRTLIDFDMTGPAMECFQLMKTS--GCEPNKSSF--RILIKGLESKGELDISATVK 181
>gi|357164141|ref|XP_003579962.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 233
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 17/201 (8%)
Query: 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQ-NPQN---PTYPSL 77
PT IT R NR P +GR LSTEAIQAVQ LKRA P T L
Sbjct: 23 PTAITITMR-----DRSKNRKPTQRGRYLSTEAIQAVQSLKRATLSGTPAAGAVATDTKL 77
Query: 78 SRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEV 136
RL+K D++A REL QGE +A+ VF I++E + + L DLI LA GL EV
Sbjct: 78 RRLLKADMVAVFRELAAQGEALLALKVFEEIRKEHWYKPRLFWYVDLITVLASKGLLSEV 137
Query: 137 DRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194
+ L E+++ D G + +++ +++A + T+ + LMK + D +
Sbjct: 138 SKACSYLKREQLE-PDTDGFNLLLKTLLDAEFTQLTMDCFRLMKLWNS----EPDRITYR 192
Query: 195 VLSKGLRRFGEEELANEVERE 215
L GL GE +L+ ++ E
Sbjct: 193 TLINGLESLGEMDLSAKMRLE 213
>gi|15242388|ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
gi|9955519|emb|CAC05458.1| putative protein [Arabidopsis thaliana]
gi|332003991|gb|AED91374.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
Length = 712
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 33 IRCGPRS-NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNPT-----------------Y 74
I+ RS NR PL +GR+LS EAIQAVQ LKRA+ P P
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546
Query: 75 PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREY-QQQDLGLLTDLINTLAKNGLT 133
RL+K D++A LREL+RQ EC++A+ VF I++EY + + + TD+I +A N L
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLM 606
Query: 134 GEVDRLIGELEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191
EV+ L ++ G + + ++ ++ + + Y M+ G ++ D
Sbjct: 607 EEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIG----YEPDRA 662
Query: 192 VGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225
+VL GL GE L+ V ++ G SLE
Sbjct: 663 SFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLE 696
>gi|22531104|gb|AAM97056.1| putative protein [Arabidopsis thaliana]
gi|30023740|gb|AAP13403.1| At5g09320 [Arabidopsis thaliana]
Length = 262
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 19/128 (14%)
Query: 31 LPIRCGPRS-NRGPLVKGRILSTEAIQAVQFLKRAHKQNP-----------------QNP 72
+ I+ RS NR PL +GR+LS EAIQAVQ LKRA+ P
Sbjct: 35 MVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRV 94
Query: 73 TYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNG 131
RL+K D++A LREL+RQ EC++A+ VF I++EY + + + TD+I +A N
Sbjct: 95 IISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNS 154
Query: 132 LTGEVDRL 139
L EV+ L
Sbjct: 155 LMEEVNYL 162
>gi|449469204|ref|XP_004152311.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449484870|ref|XP_004157003.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 245
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 33 IRCGPR--SNRGPLVKGRILSTEAIQAVQFLKRAHKQNP-QNPTYPSLSRLIKHDLLAAL 89
I CG R SNR PL R+ S EAIQAVQ LK A + ++ L RL+K DL AL
Sbjct: 38 IICGLRKGSNR-PLGLSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDAL 96
Query: 90 RELIRQGECAVAVHVFSTIQ-REYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148
EL RQ E +++ VF +Q E+ + DL L +I + KN + + + +L + DG
Sbjct: 97 SELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRK-DG 155
Query: 149 --GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206
D R + ++ A ++ E V Y LM S GC+ DE K+L K L +F EE
Sbjct: 156 LEPDTRAFNEMMGAYLQVDMIERAVETYRLMIAS--GCT--PDELTFKILIKNLEKFREE 211
>gi|358248622|ref|NP_001240168.1| uncharacterized protein LOC100781412 [Glycine max]
gi|255642193|gb|ACU21361.1| unknown [Glycine max]
Length = 246
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 7/202 (3%)
Query: 18 PKHKPTIITTHH--RLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNPTYP 75
P + +T++ R I CG RS+ + RILS E+I+ + LK A ++P +
Sbjct: 20 PNDQTPFLTSNFNRRQVIICGLRSSYKARRRTRILSKESIEVIHALKLA--RSPDHVLNA 77
Query: 76 SLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTG 134
LSRL+K D L L EL RQ + +++ VF I+ E L L D+I L +N
Sbjct: 78 KLSRLLKPDALNLLDELQRQNQLHLSLKVFHFIREELGHDTLLQLYADMILLLGRNKRID 137
Query: 135 EVDRLIGE-LEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193
+ L E LE+ D R S ++ A ++ G + ++IY MK CS D++
Sbjct: 138 MAEELFSEALEKGLKPDTRLCSEMIGAYLQLGMADKAMQIYASMKEDW-ACSSSPDKFTF 196
Query: 194 KVLSKGLRRFGEEELANEVERE 215
+L + L++ G+ ELA ++++
Sbjct: 197 TILIRYLQKNGQHELAETLKQD 218
>gi|224092960|ref|XP_002309772.1| predicted protein [Populus trichocarpa]
gi|222852675|gb|EEE90222.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
Query: 33 IRCGPRSN-RGPLVKGRILSTEAIQAVQFLKRAHKQNP--QNPTYPSLSRLIKHDLLAAL 89
I C R R PL + + LSTEAIQ +Q LK A P + LSRL+K DLL L
Sbjct: 28 ITCSLRGKPRPPLWRAKRLSTEAIQVIQSLKLARSSTPRLEEVFNSKLSRLLKTDLLDTL 87
Query: 90 RELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148
L Q E +A+ VF +++E + + D+ L +I + +N + + G+LE+ +G
Sbjct: 88 AVLQNQNELDLALKVFEFVRKEVWYKPDILLYHAMIQMVGRNKMVEMAEEFFGKLEKEEG 147
Query: 149 --GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206
D R + ++ A ++ G + + Y MK S GC D+ ++L + L G+E
Sbjct: 148 LKPDTRAFTEMIGAYLQVGMIDKAMETYERMKAS--GCD--PDKLTFRILIRNLEDAGKE 203
Query: 207 ELANEVERE 215
EL + +++E
Sbjct: 204 ELVDRIKKE 212
>gi|449455076|ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449475090|ref|XP_004154371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449508514|ref|XP_004163333.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 255
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTYPS--LSRLIKHDLLAALRELIRQGE 97
RGPL + R + EA+ +Q LKR + + + +SRL+K D++A L EL RQ E
Sbjct: 61 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
A+AV +F I++ ++ + D+ + DLI LA++ + +L + EE D + +
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + +Y MK+S DE ++L KGL L N V+++
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPP----DELPFRILLKGL--LPHPLLRNRVKQD 234
Query: 216 F 216
F
Sbjct: 235 F 235
>gi|326512702|dbj|BAK03258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTYPS--LSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ EA+ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 57 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLREFIKRHVARLLKADKLAVLGELERQEE 116
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLS 155
++V +F IQ+E + + D+ + DLI +LAK E + G ++E + D + +
Sbjct: 117 VDLSVKMFRIIQKEDWYKPDVYMYKDLIISLAKCKKMDEAMDIWGNMKEENLFPDSQTYA 176
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MKRS +E +VL KGL L N V+++
Sbjct: 177 EVIRGFLRYGSPSDAMNIYEDMKRSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 230
Query: 216 F 216
F
Sbjct: 231 F 231
>gi|168046423|ref|XP_001775673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672946|gb|EDQ59476.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 16/186 (8%)
Query: 33 IRCGPR-----SNRGPLVKGRI-LSTEAIQAVQFLKRAH--KQNPQNPTYPSLSRLIKHD 84
+RCG RGPL + R +S EA+Q V LKR KQ + S SRL+K D
Sbjct: 183 VRCGGSLKAKGKPRGPLWRQRKGVSKEALQVVFELKRCKGDKQKERVVLQNSASRLLKMD 242
Query: 85 LLAALRELIRQGECAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL 143
LL L EL RQ EC++A VF +++ E+ + D+ L ++++T KN L +V+ ++
Sbjct: 243 LLMVLEELRRQQECSLAKQVFDMVRKEEWYKPDVFLYREMMDTFGKNKLMEDVEEFYQQM 302
Query: 144 -EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG-KVLSKGLR 201
EE + L+ ++ A + + I+ +++ G EYV ++L +GL+
Sbjct: 303 QEEGLAPNAMILTEMMGAYIRNNNITRAYEIFEEIEQGG-----HQPEYVMYEILCRGLK 357
Query: 202 RFGEEE 207
+ G+ E
Sbjct: 358 KAGDFE 363
>gi|357122492|ref|XP_003562949.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 246
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTYPS--LSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ EA+ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 52 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLKEFVKRHVARLLKADKLAVLGELERQEE 111
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
++V +F +Q+E + + D+ + DLI LAK E + G + +E D + +
Sbjct: 112 VDLSVKMFRIVQKEDWYKPDVYMYKDLIIALAKCKKMEEAMEIWGNMRDEKLFPDSQTYA 171
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MKRS +E +VL KGL L N V+++
Sbjct: 172 EVIRGFLRYGSPSDAMNIYEDMKRSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 225
Query: 216 F 216
F
Sbjct: 226 F 226
>gi|15232674|ref|NP_190271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266318|sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870
gi|5541672|emb|CAB51178.1| putative protein [Arabidopsis thaliana]
gi|26450732|dbj|BAC42475.1| unknown protein [Arabidopsis thaliana]
gi|28950815|gb|AAO63331.1| At3g46870 [Arabidopsis thaliana]
gi|332644692|gb|AEE78213.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 257
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + + + + + RL+K D+LA + EL RQ E
Sbjct: 63 RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLS 155
A+A+ +F IQ+ E+ Q D+ + DLI +LAK+ E L ++++ + D + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + G + +Y M +S +E +VL KGL L N+V+++
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPP----EELPFRVLLKGL--LPHPLLRNKVKKD 236
Query: 216 F 216
F
Sbjct: 237 F 237
>gi|414590513|tpg|DAA41084.1| TPA: hypothetical protein ZEAMMB73_430161 [Zea mays]
Length = 254
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ EA+ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 60 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEE 119
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
+AV +F IQ+E + + D+ + DLI LAK E + G + +E D + +
Sbjct: 120 VDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKNMEEAMVIWGNMRDENLFPDSQTYA 179
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E +VL KGL L N V+++
Sbjct: 180 EVIRGFLRYGSPSDAMNIYEDMKKSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 233
Query: 216 F 216
F
Sbjct: 234 F 234
>gi|297815852|ref|XP_002875809.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321647|gb|EFH52068.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 257
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNP--QNPTYPSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + Q + RL+K D+LA + EL RQ E
Sbjct: 63 RGPLWRGKKLIGKEALFVILGLKRLKDDDEKLQKFIKTHVFRLLKLDMLAVIGELERQEE 122
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLS 155
A+A+ +F IQ+ E+ Q D+ + DLI +LAK+ E L ++++ + D + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + G + +Y M +S +E +VL KGL L N+V+++
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPP----EELPFRVLLKGL--LPHPLLRNKVKKD 236
Query: 216 F 216
F
Sbjct: 237 F 237
>gi|242050490|ref|XP_002462989.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
gi|241926366|gb|EER99510.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
Length = 258
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ EA+ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 64 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEE 123
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
+AV +F IQ+E + + D+ + D+I LAK E + G + +E D + +
Sbjct: 124 VDLAVKMFRIIQKEDWYKPDIYMYKDVIIALAKCKKMEEAMVIWGNMRDENLFPDSQTYA 183
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E +VL KGL L N V+++
Sbjct: 184 EVIRGFLRYGSPSDAMNIYEDMKKSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 237
Query: 216 F 216
F
Sbjct: 238 F 238
>gi|226494319|ref|NP_001143431.1| uncharacterized protein LOC100276080 [Zea mays]
gi|195620394|gb|ACG32027.1| hypothetical protein [Zea mays]
Length = 254
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ E++ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 60 RGPLWRSKKLIGKESLFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEE 119
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
+AV +F IQ+E + + D+ + DLI LAK E + G + +E D + +
Sbjct: 120 VDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKKMEEAMVIWGNMRDENLFPDSQTYA 179
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E +VL KGL L N V+++
Sbjct: 180 EVIRGFLRYGSPSDAMNIYEDMKKSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 233
Query: 216 F 216
F
Sbjct: 234 F 234
>gi|224106373|ref|XP_002314145.1| predicted protein [Populus trichocarpa]
gi|222850553|gb|EEE88100.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNP---TYPSLSRLIKHDLLAALRELIRQG 96
RGPL +G+ ++ EA+ + LKR + + + RL+K D++A L EL RQ
Sbjct: 62 RGPLWRGKKLIGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSELERQE 121
Query: 97 ECAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGL 154
E ++AV +F IQ+ ++ + D+ L DLI L K G E +L ++ D D +
Sbjct: 122 EVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNEDLFPDSQMY 181
Query: 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200
+ +R + GS + IY MK+S +E ++L KGL
Sbjct: 182 TEAIRGYLRDGSPADAMNIYEDMKKSPDPP----EELPFRILLKGL 223
>gi|225434780|ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 1 [Vitis vinifera]
gi|359478900|ref|XP_003632183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 2 [Vitis vinifera]
gi|297745987|emb|CBI16043.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAH--KQNPQNPTYPSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR ++N + + RL+K D++A L EL RQ E
Sbjct: 58 RGPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEE 117
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLS 155
++AV VF I++ ++ + D+ L DLI LAK + +L + + D D + +
Sbjct: 118 VSLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYT 177
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E ++L KGL L N V+++
Sbjct: 178 EVIRGFLRYGSPADAMNIYEDMKKSPDPP----EELPFRILLKGL--LPHPLLRNRVKQD 231
Query: 216 F 216
F
Sbjct: 232 F 232
>gi|115472667|ref|NP_001059932.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|28564798|dbj|BAC57728.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113611468|dbj|BAF21846.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|215766634|dbj|BAG98696.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199812|gb|EEC82239.1| hypothetical protein OsI_26409 [Oryza sativa Indica Group]
Length = 262
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ EA+ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 68 RGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELERQEE 127
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
+AV +F IQ+E + + D+ + DLI LAK E + G + +E D + +
Sbjct: 128 VDLAVKMFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLFPDAQTYA 187
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E +VL KGL L N V+++
Sbjct: 188 EVIRGFLRYGSPSDAMNIYEEMKKSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 241
Query: 216 F 216
F
Sbjct: 242 F 242
>gi|225434377|ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
gi|297745785|emb|CBI15841.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + + + RL+K D++A L EL RQ E
Sbjct: 58 RGPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEE 117
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLS 155
+AV VF Q+ ++ + D+ L DLI LAK +L + + D D + +
Sbjct: 118 VTLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYT 177
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E ++L KGL L N V+++
Sbjct: 178 EVIRGFLRHGSPADAMNIYEDMKKSPDPP----EELPFRILLKGL--LPHPLLRNRVKQD 231
Query: 216 F 216
F
Sbjct: 232 F 232
>gi|356538964|ref|XP_003537970.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Glycine max]
Length = 255
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL KG+ ++ EA+ + KR + + + + RL+K D++A L EL RQ +
Sbjct: 61 RGPLWKGKKLIGKEALFVISGFKRFNDDEDKLHKFIKTHVLRLLKMDMIAVLTELERQEQ 120
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
++A+ +F +Q+ ++ + D L DLI LA+ EV +L + +E D + +
Sbjct: 121 VSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMRKENLFPDSQTYT 180
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK S +E ++L KGL L N+V+++
Sbjct: 181 EVIRGFLNYGSPADAMNIYEDMKNSPDPP----EELPFRILLKGL--LPHPLLRNKVKQD 234
Query: 216 F 216
F
Sbjct: 235 F 235
>gi|255552422|ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
gi|223543626|gb|EEF45155.1| conserved hypothetical protein [Ricinus communis]
Length = 258
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + + + + RL+K D++A L EL RQ E
Sbjct: 64 RGPLWRGKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELERQEE 123
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
++A VF IQ+ ++ D+ L DLI L ++G + +L + E D + +
Sbjct: 124 VSLATKVFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSENLFPDSQMYT 183
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200
++R + GS + IY MK+S +E ++L KGL
Sbjct: 184 ELIRGFLRDGSPGDAMNIYEDMKKSPDPP----EELPFRILLKGL 224
>gi|302790069|ref|XP_002976802.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
gi|300155280|gb|EFJ21912.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
Length = 319
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 48 RILSTEAIQAVQFLKRAHKQNPQNPTY---PSLSRLIKHDLLAALRELIRQGECAVAVHV 104
+ LS E V L R HK P+ + +SRL+K DL ALREL RQ E +A+ V
Sbjct: 77 KTLSRETQLVVSDLVR-HKSEPERVSSIIKTKVSRLLKLDLFGALRELQRQLEGELALKV 135
Query: 105 FSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148
F I++ E+ D+ ++ LAK GLT + ++L E++ +DG
Sbjct: 136 FYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDG 180
>gi|388510802|gb|AFK43467.1| unknown [Lotus japonicus]
Length = 259
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 14/190 (7%)
Query: 33 IRCGPRSNRGPLVKGRILSTEAIQAVQFLK--RAHKQNPQNPTYPSLSRLIKHDLLAALR 90
I CG R++ R++S E IQ + LK ++ +Q L+RL+ D L L
Sbjct: 49 IVCGLRASFRKRRPSRVISKEGIQVIHALKLAKSSEQKLYQVLNEKLTRLLNADALDLLG 108
Query: 91 ELIRQGECAVAVHVFSTIQREYQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148
EL RQ E +++ VF+ + RE D L L +D+I L +N + GE + L ++ ++
Sbjct: 109 ELQRQNELHLSLKVFNFL-REEPGFDALLPLYSDMILLLGRNKMVGEAEELFSQV--VEK 165
Query: 149 G---DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205
G D R + ++ ++ G+ E + +Y MK S GCS D+ +L + L + GE
Sbjct: 166 GLKPDTRMFTEMIGVYLQGGNTEKAMELYRSMKAS--GCS--PDKLTFTILIRSLEKSGE 221
Query: 206 EELANEVERE 215
+EL +++E
Sbjct: 222 QELVETLKQE 231
>gi|302797539|ref|XP_002980530.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
gi|300151536|gb|EFJ18181.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
Length = 334
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 48 RILSTEAIQAVQFLKRAHKQNPQNPTY---PSLSRLIKHDLLAALRELIRQGECAVAVHV 104
+ LS E V L R HK P+ + +SRL+K DL ALREL RQ E +A+ V
Sbjct: 96 KTLSRETQLVVSDLVR-HKSEPERVSSIIKTKVSRLLKLDLFGALRELQRQLEGELALKV 154
Query: 105 FSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148
F I++ E+ D+ ++ LAK GLT + ++L E++ +DG
Sbjct: 155 FYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDG 199
>gi|225436656|ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
Length = 248
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 13 PSHHSPKHKPTIITT-----HHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQ 67
PS + +PT+ T HR R R + + + + E + A + LKR
Sbjct: 13 PSRIAALPQPTLKTLDSQYRFHRWAYRSASRPSLSIWRRKKEMGKEGLIAAKELKRLRSD 72
Query: 68 NPQNPTY--PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLI 124
+ + S+SRL++ DL++ L E RQ + +++ ++ +++E + + D+ D++
Sbjct: 73 PVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMYFYRDML 132
Query: 125 NTLAKNGLTGEVDRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
LA+N E R+ +L EE+ D +VRA ++ G + IY M+RS
Sbjct: 133 MMLARNKKVDETKRVWEDLKREEV-LFDQHTFGDIVRAFLDGGLPSEAMDIYEEMRRS 189
>gi|356547293|ref|XP_003542050.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 231
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 75 PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLT 133
PS SRL+K DL+A L E RQ + + ++ + +E + + D+ D++ LA+N
Sbjct: 65 PSFSRLLKSDLVAVLVEFQRQNQVFLCTKLYDIVWKEIWYRPDMFFYRDMLMMLARNKRV 124
Query: 134 GEVDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
E + G+L+E + D ++RA ++ G + IY M++S
Sbjct: 125 EEAKSVWGDLKEEEVLFDQHTFGDIIRAFLDNGLPSEAMDIYEEMRQS 172
>gi|356569420|ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 234
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 76 SLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTG 134
S+SRL+K DL+A L E RQ + + V ++ +++E + + D+ D++ LA+N
Sbjct: 66 SVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVE 125
Query: 135 EVDRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
E ++ G+L EE+ D ++RA ++ G + IY M++S
Sbjct: 126 EAKKVWGDLKTEEV-LFDQHTFGDIIRAFLDNGLPSEAMDIYEEMRQS 172
>gi|356523434|ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 232
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 76 SLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTG 134
S+SRL+K DL+A L E RQ + + V ++ +++E + + D+ D++ LA+N
Sbjct: 68 SVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVE 127
Query: 135 EVDRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
E ++ G+L EE+ D ++RA ++ G + IY M++S
Sbjct: 128 EAKKVWGDLKTEEV-LFDQHTFGDIIRAFLDNGLPSEAMDIYEEMRQS 174
>gi|125600640|gb|EAZ40216.1| hypothetical protein OsJ_24661 [Oryza sativa Japonica Group]
Length = 256
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL + + ++ EA+ A+Q LKR + + ++RL+K D LA L EL RQ E
Sbjct: 68 RGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELERQEE 127
Query: 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEIDGGDGRGLS 155
+F IQ+E + + D+ + DLI LAK E + G + +E D + +
Sbjct: 128 ------MFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLFPDAQTYA 181
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + GS + IY MK+S +E +VL KGL L N V+++
Sbjct: 182 EVIRGFLRYGSPSDAMNIYEEMKKSPDPP----EELPFRVLLKGL--LPHPLLRNRVKQD 235
Query: 216 F 216
F
Sbjct: 236 F 236
>gi|108707659|gb|ABF95454.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215767688|dbj|BAG99916.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 77 LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135
+SRL+++DLLA L EL+RQ +++ ++S +++E + + D+ D++ LA+N E
Sbjct: 87 VSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEE 146
Query: 136 VDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
++ +L+ D D +VRA +AG + + Y M+ S
Sbjct: 147 TRQVWADLKSEDVLFDQHTYGDIVRAFCDAGLIDLAMEFYEDMRSS 192
>gi|242059543|ref|XP_002458917.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
gi|241930892|gb|EES04037.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
Length = 523
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 50 LSTEAIQAVQFLKRAHKQNPQNPTYPSL--------SRLIKHDLLAALRELIRQGECAVA 101
+ E + AV LKR P +P L SRL++ DLLA L EL+RQ ++
Sbjct: 329 MGKEGLMAVAQLKRLAALPPAG-AHPRLEQFMRSHVSRLLRTDLLAVLAELLRQDHVILS 387
Query: 102 VHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG-GDGRGLSRVVR 159
+ ++ +++E + + D+ D++ LA+N + ++ +L+ D D +VR
Sbjct: 388 MKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKIDDTRQVWADLKSEDVLFDQHTYGDIVR 447
Query: 160 AVVEAGSKESTVRIYGLMKRS 180
A +AG + + IY M+ S
Sbjct: 448 AFCDAGLIDLAMEIYEDMRSS 468
>gi|125585935|gb|EAZ26599.1| hypothetical protein OsJ_10499 [Oryza sativa Japonica Group]
gi|218192624|gb|EEC75051.1| hypothetical protein OsI_11161 [Oryza sativa Indica Group]
Length = 195
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 77 LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135
+SRL+++DLLA L EL+RQ +++ ++S +++E + + D+ D++ LA+N E
Sbjct: 35 VSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEE 94
Query: 136 VDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
++ +L+ D D +VRA +AG + + Y M+ S
Sbjct: 95 TRQVWADLKSEDVLFDQHTYGDIVRAFCDAGLIDLAMEFYEDMRSS 140
>gi|224059705|ref|XP_002299976.1| predicted protein [Populus trichocarpa]
gi|222847234|gb|EEE84781.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 76 SLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTG 134
++SRL+K DLLA L E RQ + + + ++ +++E + + D+ L D++ LA+N
Sbjct: 29 NVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFLFRDMLMMLARNKKVD 88
Query: 135 EVDRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS---GVGCSWKVD 189
E +++ +L EE+ D ++RA ++ G + IY M++S + +
Sbjct: 89 EANQVWRDLRREEV-LFDQHTFGDIIRAFLDNGLPSKAMDIYEEMRQSPDPPISLPF--- 144
Query: 190 EYVGKVLSKGLRRFGEEELANEVEREFC 217
+V+ KGL F EL EV+ +F
Sbjct: 145 ----RVILKGLIPFP--ELREEVKDDFL 166
>gi|219886827|gb|ACL53788.1| unknown [Zea mays]
gi|219887537|gb|ACL54143.1| unknown [Zea mays]
gi|414879223|tpg|DAA56354.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879224|tpg|DAA56355.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 248
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 77 LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135
+SRL++ DLLA L EL+RQ ++++ ++ +++E + + D+ D++ LA+N E
Sbjct: 88 VSRLLRTDLLAVLAELLRQDHVSLSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKINE 147
Query: 136 VDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
++ +L+ D D +VRA +A + + IY M+ S
Sbjct: 148 TRQVWADLKSEDVLFDQHTYGDIVRAFCDADLIDLAMEIYDDMRSS 193
>gi|147841740|emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera]
gi|296083864|emb|CBI24252.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 76 SLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTG 134
S+SRL++ DL++ L E RQ + +++ ++ +++E + + D+ D++ LA+N
Sbjct: 29 SVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDVVRKEIWYRPDMYFYRDMLMMLARNKKVD 88
Query: 135 EVDRLIGEL--EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
E R+ +L EE+ D +VRA ++ G + IY M+RS
Sbjct: 89 ETKRVWEDLKREEV-LFDQHTFGDIVRAFLDGGLPSEAMDIYEEMRRS 135
>gi|302790153|ref|XP_002976844.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
gi|300155322|gb|EFJ21954.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
Length = 566
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 31 LPIRCGPRS-NRGPLVKGRILSTEAIQAVQFLKRAH--KQNPQNPTYPSLSRLIKHDLLA 87
L + C RS R P+++GR L EAI VQ LKRA ++ + +SRL+K D+L
Sbjct: 199 LRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEMEQVLKSQVSRLLKTDMLE 258
Query: 88 ALRELIRQGECAVA 101
LREL RQ +C +A
Sbjct: 259 VLRELHRQNDCVLA 272
>gi|302797623|ref|XP_002980572.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
gi|300151578|gb|EFJ18223.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
Length = 1048
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 31 LPIRCGPRS-NRGPLVKGRILSTEAIQAVQFLKRAH--KQNPQNPTYPSLSRLIKHDLLA 87
L + C RS R P+++GR L EAI VQ LKRA ++ + +SRL+K D+L
Sbjct: 199 LRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEMEQVLKSQVSRLLKTDMLE 258
Query: 88 ALRELIRQGECAVA 101
LREL RQ +C +A
Sbjct: 259 VLRELHRQNDCVLA 272
>gi|357112657|ref|XP_003558124.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Brachypodium distachyon]
Length = 248
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 77 LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135
+SRL++ DLLA L EL+RQ +++ ++ +++E + + D+ D+++ LA+N E
Sbjct: 88 VSRLLRTDLLAVLAELLRQDHVLLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKIDE 147
Query: 136 VDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
++ +L+ D D +VR +AG + + Y M+ S
Sbjct: 148 TRQVWADLKSEDVLFDQHTYGDIVRVFCDAGLIDLAMEFYEDMRSS 193
>gi|351727605|ref|NP_001238702.1| uncharacterized protein LOC100306428 [Glycine max]
gi|255628511|gb|ACU14600.1| unknown [Glycine max]
Length = 150
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 84 DLLAALRELIRQGECAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGE 142
D++A L EL RQ + ++A+ +F +Q+ ++ + D L DLI LA+ EV +L
Sbjct: 2 DMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWES 61
Query: 143 L-EEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201
+ EE D + + V+R + GS + IY MK S +E ++L KGL
Sbjct: 62 MREENLFPDSQTYTEVIRGFLNHGSPADAMNIYEDMKNSPDPP----EELPFRILLKGL- 116
Query: 202 RFGEEELANEVEREF 216
L N+V+++F
Sbjct: 117 -LPHPLLRNKVKQDF 130
>gi|297840301|ref|XP_002888032.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
gi|297333873|gb|EFH64291.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
Length = 196
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 50 LSTEAIQAVQFLKRAHKQNPQNPTYPS--LSRLIKHDLLAALRELIRQGECAVAVHVFST 107
+S E + A + LKR Q + + + +SRL+K DL++ L E RQ + + + ++
Sbjct: 1 MSKEGLIAAKELKRLQTQLVRLDRFIASHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 108 IQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG--GDGRGLSRVVRAVVEA 164
++RE + + D+ D++ LA+N E ++ +L++ +G D +VRA ++
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKK-EGVLFDQHTFGDLVRAFLDN 119
Query: 165 GSKESTVRIYGLMKRS 180
+R+YG M+ S
Sbjct: 120 ELPLEAIRLYGEMRDS 135
>gi|145336941|ref|NP_176425.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122180316|sp|Q1PFH7.1|PPR89_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62350
gi|91806011|gb|ABE65734.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332195836|gb|AEE33957.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 196
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 50 LSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGECAVAVHVFST 107
+S E + A + LKR Q+ + + +SRL+K DL++ L E RQ + + + ++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 108 IQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGDGRGLSRVVRAVVEA 164
++RE + + D+ D++ LA+N E ++ +L EE+ D +VR ++
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEV-LFDQHTFGDLVRGFLDN 119
Query: 165 GSKESTVRIYGLMKRS 180
+R+YG M+ S
Sbjct: 120 ELPLEAMRLYGEMRES 135
>gi|116830983|gb|ABK28447.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 50 LSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGECAVAVHVFST 107
+S E + A + LKR Q+ + + +SRL+K DL++ L E RQ + + + ++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 108 IQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGDGRGLSRVVRAVVEA 164
++RE + + D+ D++ LA+N E ++ +L EE+ D +VR ++
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEV-LFDQHTFGDLVRGFLDN 119
Query: 165 GSKESTVRIYGLMKRS 180
+R+YG M+ S
Sbjct: 120 ELPLEAMRLYGEMRES 135
>gi|357454525|ref|XP_003597543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486591|gb|AES67794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 246
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 26 TTHHR---LPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAH--KQNPQNPTYPSLSRL 80
TT++R + CG RS + ++S E++Q + LK A ++ L RL
Sbjct: 22 TTNNRSKATTVVCGLRSCKNKKPPSMVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRL 81
Query: 81 IKHDLLAALRELIRQGECAVAVHVFSTIQRE----YQQQDLGLLTDLINTLAKNGLTGEV 136
+K D+L L EL RQ + +++ V I + Y + L L +D I L KN + +
Sbjct: 82 LKPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAGYDKLLLPLYSDTILLLGKNKMIEKA 141
Query: 137 DRLIGELEEIDGG---DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193
+ + E+ ++ G D R + ++ ++ G+ E + +Y MK S GC D
Sbjct: 142 EEMFYEV--VEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKAS--GCL--PDALTF 195
Query: 194 KVLSKGLRRFGEEELANEVERE-FCWV 219
+L + L GE EL +++E F +V
Sbjct: 196 TILIRNLMNNGENELVETLKKESFDYV 222
>gi|357438675|ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478662|gb|AES59865.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 232
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 76 SLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTG 134
++SRL+K DL++ L E RQ +++ ++ +++E + + D+ D++ LA+N
Sbjct: 64 NVSRLLKSDLVSVLFEFHRQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVD 123
Query: 135 EVDRLIGELE-EIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
E R+ +L+ E D +VRA +++G + IY M++S
Sbjct: 124 ETKRVWDDLKGEGVLFDQHTFGDIVRAYLDSGMPSEAMDIYEEMRQS 170
>gi|388507400|gb|AFK41766.1| unknown [Medicago truncatula]
Length = 246
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 26 TTHHR---LPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAH--KQNPQNPTYPSLSRL 80
TT++R + CG RS + ++S E++Q + LK A ++ L RL
Sbjct: 22 TTNNRSKATTVVCGLRSCKNKKPPSMVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRL 81
Query: 81 IKHDLLAALRELIRQGECAVAVHVFSTIQRE----YQQQDLGLLTDLINTLAKNGLTGEV 136
+K D+L L EL RQ + +++ V I + Y + L L +D I L KN + +
Sbjct: 82 LKPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAGYDKLLLPLYSDTILLLGKNKMIEKA 141
Query: 137 DRLIGELEEIDGG---DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193
+ + E+ ++ G D R + ++ ++ G+ E + +Y MK S GC D
Sbjct: 142 EEMFYEV--VEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKAS--GCL--PDALTF 195
Query: 194 KVLSKGLRRFGEEELANEVERE-FCWV 219
+L + L GE EL +++E F +V
Sbjct: 196 TILIRNLMNNGENELVETLKKESFDYV 222
>gi|326531840|dbj|BAK01296.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 229
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 77 LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135
+SRL++ DLLA L EL+RQ +++ ++ +++E + + D+ D+++ LA+N E
Sbjct: 69 VSRLLRTDLLAVLAELLRQDHVLLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKVDE 128
Query: 136 VDRLIGELE-EIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
++ +L+ E D +VR +AG + + Y M+ S
Sbjct: 129 TRQVWADLKSEGVMFDQHTYGDIVRVFCDAGLIDLAMEFYEDMRSS 174
>gi|357131384|ref|XP_003567318.1| PREDICTED: uncharacterized protein LOC100843557 [Brachypodium
distachyon]
Length = 143
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 148 GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEE 207
G D L+R+VRA+V G + R+Y R G GC +VDEY+ +V++KG++R G +E
Sbjct: 51 GEDVYKLTRLVRALVAKGRARAAWRVYEAAVRKG-GC--EVDEYMYRVMAKGMKRLGLDE 107
Query: 208 LANEVEREFC 217
A EVE +
Sbjct: 108 EAAEVEADLA 117
>gi|449442589|ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 256
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 77 LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135
+SRL+K DL+A L EL RQ + + +++ +++E + + D+ D++ LAKN E
Sbjct: 92 VSRLLKSDLVAVLVELQRQNHVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEE 151
Query: 136 VDRLIGELEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180
++ +L++ +G D ++RA ++ + IY M+ S
Sbjct: 152 TKQVWEDLKK-EGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRES 197
>gi|242091233|ref|XP_002441449.1| hypothetical protein SORBIDRAFT_09g026880 [Sorghum bicolor]
gi|241946734|gb|EES19879.1| hypothetical protein SORBIDRAFT_09g026880 [Sorghum bicolor]
Length = 536
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 39/168 (23%)
Query: 70 QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK 129
N T PS + + + R+G+ A+ VF R+ Q D+G ++I L +
Sbjct: 339 DNHTPPSFIGINAESYNVMVNQCFREGKFKEAIEVFHRQPRKNVQMDVGCFNNIIGKLCE 398
Query: 130 NGLTGEVDRLIGELEE-------------IDG-----------------GDGRG------ 153
NG+ GE ++L E+E+ +D DG+
Sbjct: 399 NGMLGEAEKLFEEMEKKSVLPDVHTYTYLVDSCFKEGRVEDTMGYFYKMADGKQHGPKFN 458
Query: 154 ---LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198
+R+ + EAG + +++YG M + + E + K L K
Sbjct: 459 IGFFNRMFEGLTEAGRIDDALKVYGRMPDKEIKPNMTTFEILVKALCK 506
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 55 IQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+QA+ F + P + S L+K A E +G+C VH F I R
Sbjct: 107 LQAIVFYNHMLSASHARPDTYTFSFLLK-----ACEEAKEEGKCR-EVHGF--IIRFGYD 158
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174
QD+ L T+LI + A NGL ++ EE+ D + ++ + G E +++Y
Sbjct: 159 QDVVLCTNLIRSYAGNGLIETAHKV---FEEMPARDLVSWNSMISCYCQTGLHEEALKMY 215
Query: 175 GLMKRSGVG 183
M+ S VG
Sbjct: 216 DQMRISNVG 224
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 55 IQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+QA+ F + P + S L+K A E +G+C VH F I R
Sbjct: 89 LQAIVFYNHMLSASHARPDTYTFSFLLK-----ACEEAKEEGKCR-EVHGF--IIRFGYD 140
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174
QD+ L T+LI + A NGL ++ EE+ D + ++ + G E +++Y
Sbjct: 141 QDVVLCTNLIRSYAGNGLIETAHKV---FEEMPARDLVSWNSMISCYCQTGLHEEALKMY 197
Query: 175 GLMKRSGVG 183
M+ S VG
Sbjct: 198 DQMRISNVG 206
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148
+R +R G A A+H F+ ++ + D + LI+ L + E L++
Sbjct: 189 MRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDKFE 248
Query: 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL 208
D + +VR AG+ R++G MK +G+ K + Y ++ L R G+
Sbjct: 249 PDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGI----KPNVYTYSIVIDSLCRCGQITR 304
Query: 209 ANEVERE 215
A++V E
Sbjct: 305 AHDVFAE 311
>gi|297722139|ref|NP_001173433.1| Os03g0363350 [Oryza sativa Japonica Group]
gi|255674525|dbj|BAH92161.1| Os03g0363350 [Oryza sativa Japonica Group]
Length = 545
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 21/27 (77%)
Query: 37 PRSNRGPLVKGRILSTEAIQAVQFLKR 63
PR NRGPL GR LSTEAI AVQ LKR
Sbjct: 411 PRDNRGPLQHGRSLSTEAILAVQSLKR 437
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGR 152
+ GE + A ++ +++R ++ T L+N A+ GL E +R +L+E D D
Sbjct: 221 KAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHY 280
Query: 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182
+ ++ A + GS + I+ M+R+G
Sbjct: 281 AYNALMEAYSQGGSPAGALEIFQTMQRNGC 310
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 55 IQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+QA+ F + P + S L+K A E +G+C VH F I R
Sbjct: 482 LQAIVFYNHMLSASHARPDTYTFSFLLK-----ACEEAKEEGKCR-EVHGF--IIRFGYD 533
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174
QD+ L T+LI + A NGL ++ EE+ D + ++ + G E +++Y
Sbjct: 534 QDVVLCTNLIRSYAGNGLIETAHKV---FEEMPARDLVSWNSMISCYCQTGLHEEALKMY 590
Query: 175 GLMKRSGVG 183
M+ S VG
Sbjct: 591 DQMRISNVG 599
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 53 EAIQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREY 112
EA+Q + LK P+ TY L L L R G+ A+A +F+ +Q++
Sbjct: 140 EALQVFEMLKEQPFYYPKEGTYMKLLLL-----------LGRSGQPALAHRLFADMQQQG 188
Query: 113 QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE--IDGGDGRGLSRVVRAVVEAGSKEST 170
Q L T LI ++GL + RL+G+++ + D S +++A+V+A +
Sbjct: 189 CQPTPELYTALIAAYCRSGLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLV 248
Query: 171 VRIYGLMKRSGVG 183
+Y M GV
Sbjct: 249 DAMYKEMAERGVA 261
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGR 152
+ GE + A ++ +++R ++ T L+N A+ GL E +R +L+E D D
Sbjct: 221 KAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHY 280
Query: 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182
+ ++ A + GS + I+ M+R+G
Sbjct: 281 AYNALMEAYSQGGSPAGALEIFQTMQRNGC 310
>gi|198474332|ref|XP_001356649.2| GA10231 [Drosophila pseudoobscura pseudoobscura]
gi|198138345|gb|EAL33714.2| GA10231 [Drosophila pseudoobscura pseudoobscura]
Length = 1410
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 69 PQNPTYPSL-SRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTL 127
P TY +L +H LAAL+E + EC Q+E QD LL D + TL
Sbjct: 243 PSADTYTTLLCAFARHGDLAALQETL--TECD---------QKEIILQDKDLL-DTVYTL 290
Query: 128 AKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181
A NG T +VD L+ +L I G + V+ +V G +E ++I +M RS
Sbjct: 291 AVNGNTDKVDDLLAKL-HISPGFNQDAVNVILRLVNKGHEEVGLQILRVMPRSN 343
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Query: 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELE 144
L +R +R G A A+H F+ ++ + D + LI+ L + + L+
Sbjct: 132 FLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLK 191
Query: 145 EIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204
+ D + +VR AG+ R++G MK +G+ K + Y ++ L R G
Sbjct: 192 DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGI----KPNVYTYSIVIDSLCRCG 247
Query: 205 EEELANEVERE 215
+ A+++ E
Sbjct: 248 QITRAHDIFAE 258
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 43 PLVKGRIL-STEAIQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQGECAVA 101
P++ G IL + ++++ LK+ H +N L ++K+ ++ E GE A
Sbjct: 466 PMMMGSILEACSGLKSISLLKQVHSYAIRNGL---LDLILKNRIIDIYGEC---GEVCYA 519
Query: 102 VHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG---DGRGLSRVV 158
+++F + + +D+ T ++N A+NGL E L G++ ++ G D L ++
Sbjct: 520 LNIFEMLDK----KDIVTWTSMVNCFAENGLLHEAVALFGKM--LNAGIQPDSVALVGIL 573
Query: 159 RAVVEAGSKESTVRIYGLMKRS-----GVGCSWKVDEYVG-KVLSKGLRRFGEEELANEV 212
A+ S I+G + R G S VD Y G ++ L+ F E + + V
Sbjct: 574 GAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVV 633
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 100 VAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG---DGRGLSR 156
VA VF T++R D+ +I A+NG++ E L ++ + GG + LS
Sbjct: 253 VARKVFDTMER-----DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSA 307
Query: 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
V+ A AG+ ++ RI+ + R G+ + + YVG + + G E+A+ R+
Sbjct: 308 VLLACAHAGAIQTGKRIHNQVVRMGL----EENVYVGTSIVDMYSKCGRVEMASRAFRKI 363
>gi|212275818|ref|NP_001130642.1| uncharacterized protein LOC100191742 [Zea mays]
gi|194689720|gb|ACF78944.1| unknown [Zea mays]
gi|414871331|tpg|DAA49888.1| TPA: hypothetical protein ZEAMMB73_769486 [Zea mays]
Length = 813
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 71 NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN 130
N T PS + + + R+G+ A+ VF R+ Q D+G ++I L +N
Sbjct: 339 NHTPPSFIGINAESYNVMVNQCFREGKFQEAIEVFHRQPRKNVQMDVGCFNNIIGKLCEN 398
Query: 131 GLTGEVDRLIGELEE 145
G+ E +L E+E+
Sbjct: 399 GMLAEAKKLFEEMEK 413
>gi|414871330|tpg|DAA49887.1| TPA: hypothetical protein ZEAMMB73_769486 [Zea mays]
Length = 775
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 71 NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN 130
N T PS + + + R+G+ A+ VF R+ Q D+G ++I L +N
Sbjct: 301 NHTPPSFIGINAESYNVMVNQCFREGKFQEAIEVFHRQPRKNVQMDVGCFNNIIGKLCEN 360
Query: 131 GLTGEVDRLIGELEE 145
G+ E +L E+E+
Sbjct: 361 GMLAEAKKLFEEMEK 375
>gi|224033807|gb|ACN35979.1| unknown [Zea mays]
Length = 813
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 71 NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN 130
N T PS + + + R+G+ A+ VF R+ Q D+G ++I L +N
Sbjct: 339 NHTPPSFIGINAESYNVMVNQCFREGKFQEAIEVFHRQPRKNVQMDVGCFNNIIGKLCEN 398
Query: 131 GLTGEVDRLIGELEE 145
G+ E +L E+E+
Sbjct: 399 GMLAEAKKLFEEMEK 413
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGL 154
+G+ A A +F +Q+ D T LIN L + G E DR++ E+ +D G
Sbjct: 370 KGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEM--VDKG----- 422
Query: 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGK----------VLSKGLRRF 203
++ TV I G KR + +++V +E VG+ LS GL +
Sbjct: 423 -------LDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQ 475
Query: 204 GEEELANEVEREFC 217
G+ ANE+ E C
Sbjct: 476 GDVRAANELLHEMC 489
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 100 VAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG---DGRGLSR 156
VA VF T++R D+ +I A+NG++ E L ++ + GG + LS
Sbjct: 252 VARKVFDTMER-----DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSA 306
Query: 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
V+ A AG+ ++ RI+ + R G+ + + YVG + + G E+A+ R+
Sbjct: 307 VLLACAHAGAIQTGKRIHNQVVRMGL----EENVYVGTSIVDMYSKCGRVEMASRAFRKI 362
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID 147
A+ + R GE A +FS + + Q D+ + +IN L + GL E +L E++E
Sbjct: 385 AIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDE-- 442
Query: 148 GGDGRGLSRVVRAVVEAG---SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204
+G L+ + + G + E++ I L + G + D + K L G
Sbjct: 443 --NGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG--FSADASTMTLFVKMLSDDG 498
Query: 205 EEELANEVEREFCWVPGGSLENLSV 229
++ ++ R+FC EN+ V
Sbjct: 499 LDQSLKQILRDFCKQKSWIYENVMV 523
>gi|195147886|ref|XP_002014905.1| GL19424 [Drosophila persimilis]
gi|194106858|gb|EDW28901.1| GL19424 [Drosophila persimilis]
Length = 1410
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 69 PQNPTYPSL-SRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTL 127
P TY +L +H LAAL+E + EC Q+E QD LL D + TL
Sbjct: 243 PSADTYTTLLCAFARHGDLAALQETL--TECD---------QKEIILQDKDLL-DTVYTL 290
Query: 128 AKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181
A NG + +VD L+ +L I G + V+ +V G +E ++I +M RS
Sbjct: 291 AVNGNSEKVDDLLAKL-HISPGFNQDAVNVILRLVNKGHEEVGLQILRVMPRSN 343
>gi|357131255|ref|XP_003567254.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g10270-like [Brachypodium distachyon]
Length = 761
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%)
Query: 70 QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK 129
N T PS + + + ++G+ A+ VF R+ Q D+G ++I L +
Sbjct: 338 DNHTPPSFIGINSESYNVMVNQCFKEGKFHEAIKVFHRQPRKNVQIDVGCFNNIIGKLCE 397
Query: 130 NGLTGEVDRLIGELEE-------------IDG-----------------GDGR------- 152
NGL E + L E+E +D DGR
Sbjct: 398 NGLLSEAEMLFQEMESKSVLPDVYTYTYLVDSCFKICRVDDTMQYFYKMADGREHGPKFN 457
Query: 153 --GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198
+R+ + EAG + +++YG M + + E + K L K
Sbjct: 458 IGFFNRMFEGLTEAGRIDDALKVYGRMPDKEIKPNTTTFEILVKALCK 505
>gi|242036531|ref|XP_002465660.1| hypothetical protein SORBIDRAFT_01g043290 [Sorghum bicolor]
gi|241919514|gb|EER92658.1| hypothetical protein SORBIDRAFT_01g043290 [Sorghum bicolor]
Length = 927
Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 71 NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN 130
N + PS + + + R+G+ A+ VF R+ Q D+G ++I L +N
Sbjct: 339 NHSPPSFIGINAESYNVMVNQCFREGKFKEAIEVFHRQPRKNVQMDVGCFNNIIGKLCEN 398
Query: 131 GLTGEVDRLIGELE 144
G+ E ++L E+E
Sbjct: 399 GMLAEAEKLFEEME 412
>gi|395775960|ref|ZP_10456475.1| NRPS/PKS (OzmH) [Streptomyces acidiscabies 84-104]
Length = 6826
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG- 149
E +R GEC+VAV +L L + TLA+NG+T DR+ + DG
Sbjct: 220 ESLRSGECSVAVA---------GGVNLILHESHLRTLAENGMTSPGDRVRAFGKGADGFV 270
Query: 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYV-------GKVLSKGLRR 202
DG G+ VV +E + RIYG+++ S V K Y +V+ LR+
Sbjct: 271 DGEGVGAVVLKPLERAVADGD-RIYGVIRSSAVNSGGKTGGYTVPSPAAQAEVIRTSLRK 329
Query: 203 FG 204
G
Sbjct: 330 AG 331
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 54 AIQAVQFLKRAHKQN--PQNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE 111
+ A LKR N P TY +L ++ + + +A+H+F+ + R+
Sbjct: 310 STHAYLLLKRMRGDNLAPDECTYNTL-----------IKGFFDESKMMLAIHIFNEMLRQ 358
Query: 112 YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171
+ L T LI+ +NG E R++ E++ G S V + + GS
Sbjct: 359 GLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVA----GVKPSEVTYSAMLNGSVHEAF 414
Query: 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211
+Y M++ GCS D Y + L +GL + G A E
Sbjct: 415 SVYDNMEK--YGCS--PDVYTYRNLLRGLCKGGHLVQAKE 450
>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 123 LINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182
L++ +K G GE R+ EE D L V V AG++E VR++ +M+R G+
Sbjct: 150 LVSMYSKCGEMGEARRVFDVAEERDDVSWNSL---VSGYVRAGAREEMVRVFAMMRRGGM 206
Query: 183 G 183
G
Sbjct: 207 G 207
>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 123 LINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182
L++ +K G GE R+ EE D L V V AG++E VR++ +M+R G+
Sbjct: 150 LVSMYSKCGEMGEARRVFDVAEERDDVSWNSL---VSGYVRAGAREEMVRVFAMMRRGGM 206
Query: 183 G 183
G
Sbjct: 207 G 207
>gi|345563288|gb|EGX46291.1| hypothetical protein AOL_s00110g115 [Arthrobotrys oligospora ATCC
24927]
Length = 983
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 40 NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNP--------TYPSLSRLIKHDLL--AAL 89
N+ PL+ R + IQA + +A ++ NP T LS IK + L AL
Sbjct: 362 NKIPLLLQR-FNMPVIQAQYVVTQALAKSGSNPLSLDPSLDTMLDLSNDIKQEFLFACAL 420
Query: 90 RELIRQGECAVA---VHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI 146
++I + V V + + +R Y Q +L+ +G V+RLI E+EE+
Sbjct: 421 HQIIEESSVEVILGDVPLQTMAKRRYTQ------GELVAECMSDG--DRVERLISEIEEL 472
Query: 147 DGGDGRGLSRVVRAVVEAGSKESTVRIYGLMK 178
DG G + VV + + +T+ +Y L K
Sbjct: 473 DGNSGAIVGAVVEMLRIMCEQRATMGLYTLCK 504
>gi|383816142|ref|ZP_09971545.1| replicative DNA helicase [Serratia sp. M24T3]
gi|383295064|gb|EIC83395.1| replicative DNA helicase [Serratia sp. M24T3]
Length = 455
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 98 CAVAVH---VFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151
C AV V +++ +QQ L LL+DL GL +DRLIG LE+I GG+G
Sbjct: 127 CEQAVQPGAVVASLNERVEQQ-LTLLSDLTRVRQDVGLLSGLDRLIGHLEQITGGNG 182
>gi|297720781|ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group]
gi|255674093|dbj|BAH91482.1| Os01g0959600 [Oryza sativa Japonica Group]
Length = 542
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 123 LINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182
L++ +K G GE R+ EE D L V V AG++E VR++ +M+R G+
Sbjct: 150 LVSMYSKCGEMGEARRVFDVAEERDDVSWNSL---VSGYVRAGAREEMVRVFAMMRRGGM 206
Query: 183 G 183
G
Sbjct: 207 G 207
>gi|330469628|ref|YP_004407371.1| GTPase CgtA [Verrucosispora maris AB-18-032]
gi|328812599|gb|AEB46771.1| GTPase CgtA [Verrucosispora maris AB-18-032]
Length = 494
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 91 ELIRQGE-CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG 149
E +R E CAV VHV T E + L + + LA+ G + RL+ L +ID
Sbjct: 229 EFLRHIERCAVLVHVIDTATLEPGRDPLADIDTIEAELAEYGGLADRPRLVA-LNKIDVP 287
Query: 150 DGRGLSRVVRAVVEA 164
DGR L+ +VR +EA
Sbjct: 288 DGRDLADIVRPDLEA 302
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,573,149,173
Number of Sequences: 23463169
Number of extensions: 146129444
Number of successful extensions: 398688
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 398502
Number of HSP's gapped (non-prelim): 153
length of query: 229
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 91
effective length of database: 9,121,278,045
effective search space: 830036302095
effective search space used: 830036302095
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)