BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026993
         (229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GKF|O Chain O, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|L Chain L, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|M Chain M, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|N Chain N, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|K Chain K, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|F Chain F, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|I Chain I, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|H Chain H, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|G Chain G, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|J Chain J, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|S Chain S, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|P Chain P, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|Q Chain Q, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|R Chain R, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|T Chain T, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|E Chain E, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|B Chain B, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|C Chain C, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|D Chain D, Crystal Structure Of E. Coli Lsrf
 pdb|3GKF|A Chain A, Crystal Structure Of E. Coli Lsrf
          Length = 293

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 77  LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL 132
           L+ L    +  ++ + +R   CAVA  V+  I  EY+ Q +  +  L++   K G+
Sbjct: 117 LAELSNEAVALSMDDAVRLNSCAVAAQVY--IGSEYEHQSIKNIIQLVDAGMKVGM 170


>pdb|3GLC|A Chain A, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|B Chain B, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|C Chain C, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|D Chain D, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|E Chain E, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|F Chain F, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|G Chain G, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|H Chain H, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|I Chain I, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|J Chain J, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|K Chain K, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|L Chain L, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|M Chain M, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|N Chain N, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|O Chain O, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|P Chain P, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|Q Chain Q, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|R Chain R, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|S Chain S, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GLC|T Chain T, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribose-5-phosphate
 pdb|3GND|A Chain A, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|B Chain B, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|C Chain C, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|D Chain D, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|E Chain E, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|F Chain F, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|G Chain G, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|H Chain H, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|I Chain I, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|J Chain J, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|K Chain K, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|L Chain L, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|M Chain M, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|N Chain N, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|O Chain O, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|P Chain P, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|Q Chain Q, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|R Chain R, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|S Chain S, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
 pdb|3GND|T Chain T, Crystal Structure Of E. Coli Lsrf In Complex With
           Ribulose-5-Phosphate
          Length = 295

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 77  LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL 132
           L+ L    +  ++ + +R   CAVA  V+  I  EY+ Q +  +  L++   K G+
Sbjct: 119 LAELSNEAVALSMDDAVRLNSCAVAAQVY--IGSEYEHQSIKNIIQLVDAGMKVGM 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,135,214
Number of Sequences: 62578
Number of extensions: 214523
Number of successful extensions: 534
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 3
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)