Query 026993
Match_columns 229
No_of_seqs 234 out of 1812
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 99.9 1.2E-25 2.6E-30 223.2 18.5 183 20-219 575-783 (1060)
2 PLN03218 maturation of RBCL 1; 99.9 1.3E-25 2.7E-30 223.0 18.2 181 22-219 435-643 (1060)
3 PLN03081 pentatricopeptide (PP 99.9 7.2E-26 1.6E-30 218.0 14.7 145 52-217 307-453 (697)
4 PLN03081 pentatricopeptide (PP 99.9 5.4E-25 1.2E-29 211.9 14.0 178 22-219 187-389 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 1.7E-23 3.8E-28 205.6 15.1 178 22-219 150-352 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 4.2E-23 9.2E-28 202.8 16.3 174 22-217 453-652 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 1.8E-17 4E-22 106.9 6.7 50 149-202 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 5E-17 1.1E-21 104.9 6.3 49 115-163 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.3 3.8E-12 8.3E-17 75.5 3.9 30 148-177 4-33 (34)
10 PF12854 PPR_1: PPR repeat 99.2 3.7E-11 8E-16 71.2 4.4 34 180-217 1-34 (34)
11 PRK11788 tetratricopeptide rep 99.1 1.1E-08 2.5E-13 91.3 17.0 121 92-219 190-311 (389)
12 PRK11788 tetratricopeptide rep 98.9 8.8E-08 1.9E-12 85.5 16.8 95 121-219 184-278 (389)
13 KOG4422 Uncharacterized conser 98.9 3.5E-08 7.6E-13 88.7 13.7 124 86-218 211-341 (625)
14 TIGR00756 PPR pentatricopeptid 98.8 5.1E-09 1.1E-13 61.1 4.3 35 152-190 1-35 (35)
15 KOG4422 Uncharacterized conser 98.8 5.8E-08 1.2E-12 87.3 10.4 101 116-224 206-312 (625)
16 TIGR02917 PEP_TPR_lipo putativ 98.8 6.6E-07 1.4E-11 86.4 18.7 126 88-219 573-698 (899)
17 TIGR00756 PPR pentatricopeptid 98.7 1.4E-08 2.9E-13 59.3 3.8 34 118-151 1-35 (35)
18 PF01535 PPR: PPR repeat; Int 98.7 1.1E-08 2.4E-13 58.4 3.2 31 152-182 1-31 (31)
19 TIGR02917 PEP_TPR_lipo putativ 98.7 1.2E-06 2.7E-11 84.5 18.7 126 88-219 607-732 (899)
20 PF13812 PPR_3: Pentatricopept 98.6 5.6E-08 1.2E-12 56.7 4.3 32 152-183 2-33 (34)
21 PF01535 PPR: PPR repeat; Int 98.5 1E-07 2.3E-12 54.2 3.1 30 118-147 1-30 (31)
22 TIGR02521 type_IV_pilW type IV 98.5 2.5E-05 5.5E-10 63.1 18.5 127 88-220 71-199 (234)
23 PF13812 PPR_3: Pentatricopept 98.5 1.8E-07 3.9E-12 54.5 4.1 33 117-149 1-34 (34)
24 TIGR02521 type_IV_pilW type IV 98.4 4.6E-05 1E-09 61.5 18.4 127 88-220 105-233 (234)
25 PF13429 TPR_15: Tetratricopep 98.3 8.3E-06 1.8E-10 70.2 10.8 123 89-217 153-275 (280)
26 PRK12370 invasion protein regu 98.2 0.00024 5.1E-09 67.4 18.9 125 91-222 347-473 (553)
27 TIGR00990 3a0801s09 mitochondr 98.1 0.00034 7.4E-09 66.9 19.4 129 88-222 371-499 (615)
28 cd00189 TPR Tetratricopeptide 98.1 0.00012 2.5E-09 49.7 11.8 95 120-219 3-97 (100)
29 TIGR00990 3a0801s09 mitochondr 98.1 0.0004 8.7E-09 66.5 19.0 125 91-222 340-465 (615)
30 PRK15174 Vi polysaccharide exp 98.1 0.00062 1.3E-08 65.9 20.4 123 92-221 256-383 (656)
31 PRK15174 Vi polysaccharide exp 98.1 0.00068 1.5E-08 65.6 20.4 127 90-222 220-350 (656)
32 PF13429 TPR_15: Tetratricopep 98.0 5.4E-05 1.2E-09 65.1 11.1 131 87-224 115-248 (280)
33 PF10037 MRP-S27: Mitochondria 98.0 6E-05 1.3E-09 69.0 10.7 115 84-203 68-186 (429)
34 PF08579 RPM2: Mitochondrial r 98.0 0.00024 5.2E-09 53.3 11.4 79 120-202 28-116 (120)
35 PF06239 ECSIT: Evolutionarily 97.9 0.00019 4.2E-09 59.7 11.8 88 115-206 45-154 (228)
36 PRK15359 type III secretion sy 97.9 0.00098 2.1E-08 52.0 15.2 89 90-179 32-120 (144)
37 TIGR02552 LcrH_SycD type III s 97.9 0.00077 1.7E-08 51.1 13.6 97 119-220 19-115 (135)
38 cd00189 TPR Tetratricopeptide 97.8 0.00056 1.2E-08 46.2 11.2 91 88-179 6-96 (100)
39 PRK11447 cellulose synthase su 97.8 0.0012 2.7E-08 67.7 18.0 126 91-222 278-417 (1157)
40 PRK11447 cellulose synthase su 97.8 0.0024 5.3E-08 65.6 19.7 120 89-219 580-700 (1157)
41 PF10037 MRP-S27: Mitochondria 97.8 0.00023 5E-09 65.2 10.9 112 104-219 50-167 (429)
42 PRK09782 bacteriophage N4 rece 97.8 0.0042 9E-08 62.8 20.7 120 94-220 588-707 (987)
43 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0011 2.4E-08 48.5 12.6 92 89-180 9-105 (119)
44 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0016 3.5E-08 59.3 16.0 121 87-217 174-295 (395)
45 PRK11189 lipoprotein NlpI; Pro 97.7 0.0041 8.9E-08 54.3 17.1 119 91-217 73-192 (296)
46 PF04733 Coatomer_E: Coatomer 97.7 9.3E-05 2E-09 64.7 6.7 127 88-221 137-267 (290)
47 PRK09782 bacteriophage N4 rece 97.7 0.0036 7.7E-08 63.3 18.5 130 87-223 547-676 (987)
48 PRK10370 formate-dependent nit 97.7 0.0049 1.1E-07 50.8 16.3 90 90-180 81-173 (198)
49 PRK12370 invasion protein regu 97.7 0.0021 4.5E-08 61.0 15.9 119 96-222 318-438 (553)
50 TIGR02552 LcrH_SycD type III s 97.6 0.0043 9.4E-08 46.9 14.2 104 87-197 22-125 (135)
51 PF04733 Coatomer_E: Coatomer 97.6 0.0012 2.7E-08 57.6 12.3 119 91-221 111-232 (290)
52 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.8E-08 49.4 10.4 77 87-164 30-117 (120)
53 PRK15359 type III secretion sy 97.6 0.0029 6.3E-08 49.3 13.0 102 115-223 24-125 (144)
54 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0068 1.5E-07 44.2 14.3 103 119-224 4-110 (119)
55 PRK10049 pgaA outer membrane p 97.5 0.0088 1.9E-07 59.0 18.7 126 86-218 53-178 (765)
56 TIGR03302 OM_YfiO outer membra 97.5 0.016 3.4E-07 48.2 17.6 130 88-221 76-234 (235)
57 PF05843 Suf: Suppressor of fo 97.5 0.0022 4.7E-08 55.7 12.4 129 86-222 5-139 (280)
58 PRK10049 pgaA outer membrane p 97.5 0.0082 1.8E-07 59.2 17.7 128 89-223 22-149 (765)
59 PRK10747 putative protoheme IX 97.5 0.011 2.4E-07 53.8 17.0 121 87-218 268-389 (398)
60 PF09976 TPR_21: Tetratricopep 97.4 0.017 3.8E-07 44.7 15.8 115 94-215 23-143 (145)
61 PRK15179 Vi polysaccharide bio 97.4 0.013 2.9E-07 57.1 17.7 127 88-223 92-221 (694)
62 KOG4318 Bicoid mRNA stability 97.4 0.00026 5.6E-09 68.9 5.7 94 107-217 15-110 (1088)
63 KOG4318 Bicoid mRNA stability 97.4 0.0018 3.9E-08 63.3 11.2 90 115-211 202-292 (1088)
64 PF12895 Apc3: Anaphase-promot 97.4 0.00042 9.2E-09 48.7 5.4 79 131-215 3-83 (84)
65 TIGR03302 OM_YfiO outer membra 97.4 0.016 3.5E-07 48.2 15.9 130 87-222 38-198 (235)
66 KOG1840 Kinesin light chain [C 97.4 0.0081 1.7E-07 56.4 15.3 128 87-218 330-478 (508)
67 PLN03088 SGT1, suppressor of 97.4 0.011 2.3E-07 53.1 15.4 105 89-200 9-113 (356)
68 PF14559 TPR_19: Tetratricopep 97.3 0.0017 3.7E-08 43.3 7.7 64 93-158 2-65 (68)
69 KOG1126 DNA-binding cell divis 97.3 0.0084 1.8E-07 56.8 13.9 168 50-224 433-626 (638)
70 KOG3081 Vesicle coat complex C 97.3 0.0042 9.2E-08 53.3 10.8 122 89-223 115-240 (299)
71 PRK14574 hmsH outer membrane p 97.3 0.013 2.8E-07 58.2 15.9 128 87-224 73-203 (822)
72 TIGR00540 hemY_coli hemY prote 97.2 0.022 4.8E-07 51.9 16.2 124 87-216 268-396 (409)
73 COG5010 TadD Flp pilus assembl 97.2 0.022 4.8E-07 48.5 14.8 121 88-214 106-226 (257)
74 PF06239 ECSIT: Evolutionarily 97.2 0.0042 9.2E-08 51.8 10.2 86 93-179 63-167 (228)
75 PRK11189 lipoprotein NlpI; Pro 97.2 0.029 6.3E-07 48.9 16.1 121 95-222 39-164 (296)
76 PRK10370 formate-dependent nit 97.2 0.014 3E-07 48.1 13.2 125 95-225 52-179 (198)
77 TIGR00540 hemY_coli hemY prote 97.2 0.019 4.1E-07 52.3 15.4 131 91-223 162-296 (409)
78 PF12895 Apc3: Anaphase-promot 97.2 0.0025 5.4E-08 44.7 7.4 81 95-176 2-83 (84)
79 PRK10747 putative protoheme IX 97.2 0.026 5.7E-07 51.3 16.0 118 95-220 97-217 (398)
80 PF14559 TPR_19: Tetratricopep 97.0 0.0037 8.1E-08 41.6 7.1 65 127-197 1-65 (68)
81 PRK14574 hmsH outer membrane p 97.0 0.029 6.4E-07 55.7 15.9 120 89-216 109-229 (822)
82 PLN03088 SGT1, suppressor of 97.0 0.018 3.9E-07 51.7 13.0 93 125-222 10-102 (356)
83 COG4783 Putative Zn-dependent 97.0 0.044 9.6E-07 50.5 15.5 120 91-217 315-435 (484)
84 cd05804 StaR_like StaR_like; a 96.9 0.035 7.7E-07 48.8 14.0 98 119-219 116-215 (355)
85 cd05804 StaR_like StaR_like; a 96.9 0.056 1.2E-06 47.5 14.9 122 92-221 53-179 (355)
86 PRK02603 photosystem I assembl 96.9 0.048 1E-06 43.4 13.2 100 117-221 35-151 (172)
87 COG3071 HemY Uncharacterized e 96.8 0.19 4E-06 45.4 17.6 68 151-224 328-396 (400)
88 COG5010 TadD Flp pilus assembl 96.8 0.073 1.6E-06 45.4 14.2 123 93-221 77-199 (257)
89 COG3063 PilF Tfp pilus assembl 96.8 0.07 1.5E-06 45.0 13.8 128 92-225 113-242 (250)
90 COG2956 Predicted N-acetylgluc 96.7 0.045 9.8E-07 48.4 12.6 120 95-222 48-173 (389)
91 PF12921 ATP13: Mitochondrial 96.7 0.041 8.8E-07 42.2 10.8 86 116-205 1-103 (126)
92 KOG1840 Kinesin light chain [C 96.5 0.1 2.3E-06 49.0 14.4 128 88-219 205-354 (508)
93 KOG4626 O-linked N-acetylgluco 96.5 0.15 3.3E-06 48.8 15.3 121 88-216 326-448 (966)
94 COG3063 PilF Tfp pilus assembl 96.5 0.2 4.3E-06 42.4 14.5 125 90-219 43-168 (250)
95 PRK02603 photosystem I assembl 96.5 0.3 6.5E-06 38.8 15.3 109 89-205 42-166 (172)
96 PRK15179 Vi polysaccharide bio 96.4 0.2 4.3E-06 49.1 16.6 100 111-218 81-182 (694)
97 PF03704 BTAD: Bacterial trans 96.4 0.036 7.7E-07 42.8 9.3 72 119-194 64-140 (146)
98 CHL00033 ycf3 photosystem I as 96.4 0.17 3.6E-06 40.0 13.3 93 117-214 35-137 (168)
99 PRK10803 tol-pal system protei 96.3 0.12 2.6E-06 44.5 12.8 104 117-223 143-250 (263)
100 KOG4626 O-linked N-acetylgluco 96.3 0.65 1.4E-05 44.7 18.2 119 94-221 298-419 (966)
101 KOG1129 TPR repeat-containing 96.2 0.081 1.7E-06 47.0 11.2 101 121-228 227-328 (478)
102 KOG2002 TPR-containing nuclear 96.2 0.029 6.2E-07 55.5 9.0 120 96-219 626-745 (1018)
103 COG2956 Predicted N-acetylgluc 96.2 0.27 5.9E-06 43.6 14.1 130 88-222 147-281 (389)
104 PF13432 TPR_16: Tetratricopep 96.1 0.043 9.3E-07 36.1 7.3 53 126-179 6-59 (65)
105 KOG1126 DNA-binding cell divis 95.9 0.1 2.2E-06 49.8 11.2 103 115-222 484-589 (638)
106 PF03704 BTAD: Bacterial trans 95.9 0.47 1E-05 36.4 13.5 107 92-219 16-125 (146)
107 KOG2002 TPR-containing nuclear 95.9 0.2 4.3E-06 49.8 13.2 125 92-221 656-800 (1018)
108 KOG1155 Anaphase-promoting com 95.8 0.42 9.1E-06 44.3 14.2 119 94-216 274-458 (559)
109 CHL00033 ycf3 photosystem I as 95.8 0.6 1.3E-05 36.8 13.8 87 89-175 42-137 (168)
110 PF09295 ChAPs: ChAPs (Chs5p-A 95.8 0.32 6.9E-06 44.5 13.5 88 89-178 207-295 (395)
111 PF13432 TPR_16: Tetratricopep 95.7 0.05 1.1E-06 35.8 6.4 60 158-222 4-63 (65)
112 PF05843 Suf: Suppressor of fo 95.6 0.34 7.3E-06 42.0 12.8 100 91-198 45-148 (280)
113 KOG2076 RNA polymerase III tra 95.6 0.35 7.5E-06 47.8 13.8 121 86-208 418-544 (895)
114 COG4783 Putative Zn-dependent 95.6 0.9 1.9E-05 42.2 15.7 90 88-179 346-436 (484)
115 KOG2003 TPR repeat-containing 95.6 0.6 1.3E-05 43.3 14.5 108 92-206 602-710 (840)
116 KOG1915 Cell cycle control pro 95.6 0.53 1.1E-05 43.9 14.0 122 93-222 118-239 (677)
117 PF12921 ATP13: Mitochondrial 95.6 0.1 2.3E-06 39.9 8.3 74 150-223 1-85 (126)
118 KOG3941 Intermediate in Toll s 95.5 0.19 4.2E-06 43.9 10.4 37 166-206 138-174 (406)
119 PF09976 TPR_21: Tetratricopep 95.5 0.25 5.4E-06 38.1 10.4 89 87-176 53-143 (145)
120 PF13424 TPR_12: Tetratricopep 95.5 0.073 1.6E-06 36.3 6.6 58 119-176 7-71 (78)
121 KOG1129 TPR repeat-containing 95.5 0.22 4.8E-06 44.3 10.8 122 89-217 263-385 (478)
122 KOG1070 rRNA processing protei 95.4 0.49 1.1E-05 49.0 14.5 127 85-219 1461-1593(1710)
123 PF04840 Vps16_C: Vps16, C-ter 95.4 0.29 6.2E-06 43.5 11.8 105 86-213 181-285 (319)
124 PF13424 TPR_12: Tetratricopep 95.4 0.071 1.5E-06 36.3 6.3 64 152-218 6-74 (78)
125 PRK10803 tol-pal system protei 95.2 0.65 1.4E-05 40.0 13.0 87 92-180 153-246 (263)
126 PRK10153 DNA-binding transcrip 95.1 0.99 2.2E-05 42.7 14.8 117 98-222 358-485 (517)
127 PRK15363 pathogenicity island 95.0 0.49 1.1E-05 37.7 10.7 88 90-179 43-131 (157)
128 KOG1914 mRNA cleavage and poly 95.0 1.5 3.3E-05 41.4 15.4 128 87-221 371-503 (656)
129 PF13371 TPR_9: Tetratricopept 95.0 0.23 5.1E-06 33.1 7.9 55 126-180 4-58 (73)
130 KOG3616 Selective LIM binding 94.9 0.18 3.9E-06 49.2 9.1 110 89-214 739-848 (1636)
131 KOG0547 Translocase of outer m 94.8 0.71 1.5E-05 43.1 12.4 118 92-217 438-564 (606)
132 COG3629 DnrI DNA-binding trans 94.7 0.51 1.1E-05 41.1 10.9 80 117-200 153-237 (280)
133 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.97 2.1E-05 41.8 12.8 52 91-144 84-139 (453)
134 PF13414 TPR_11: TPR repeat; P 94.5 0.3 6.6E-06 32.2 7.3 60 152-216 4-64 (69)
135 KOG1070 rRNA processing protei 94.3 1.4 3.1E-05 45.8 14.3 56 119-174 1532-1587(1710)
136 PF12569 NARP1: NMDA receptor- 94.3 1.3 2.9E-05 41.9 13.6 97 118-220 195-292 (517)
137 PF12569 NARP1: NMDA receptor- 94.3 1.9 4.1E-05 40.9 14.6 125 91-219 203-334 (517)
138 KOG2003 TPR repeat-containing 94.3 2.2 4.8E-05 39.7 14.3 122 97-225 573-695 (840)
139 KOG2053 Mitochondrial inherita 94.2 1.1 2.4E-05 44.4 13.1 118 93-219 20-139 (932)
140 PF13371 TPR_9: Tetratricopept 94.2 0.31 6.8E-06 32.5 7.0 56 91-147 4-59 (73)
141 KOG3081 Vesicle coat complex C 94.2 0.99 2.1E-05 39.1 11.3 121 90-218 145-270 (299)
142 PF13414 TPR_11: TPR repeat; P 94.2 0.38 8.3E-06 31.7 7.3 63 117-179 3-66 (69)
143 KOG1915 Cell cycle control pro 94.1 1.1 2.4E-05 41.8 12.2 116 95-218 86-202 (677)
144 PF13512 TPR_18: Tetratricopep 94.0 1 2.2E-05 35.3 10.2 78 90-168 18-99 (142)
145 KOG1173 Anaphase-promoting com 93.9 0.86 1.9E-05 43.1 11.2 103 95-203 427-535 (611)
146 KOG2376 Signal recognition par 93.8 1 2.2E-05 42.9 11.4 117 87-218 17-138 (652)
147 KOG2796 Uncharacterized conser 93.7 1.4 3.1E-05 38.2 11.3 128 88-223 183-319 (366)
148 KOG1155 Anaphase-promoting com 93.4 4.3 9.2E-05 37.9 14.5 96 116-216 397-492 (559)
149 PF07079 DUF1347: Protein of u 93.4 2.5 5.4E-05 39.3 13.0 125 92-219 16-157 (549)
150 KOG1156 N-terminal acetyltrans 93.3 1.1 2.3E-05 43.1 10.9 100 118-223 372-472 (700)
151 PF13512 TPR_18: Tetratricopep 93.3 1.8 3.8E-05 33.9 10.4 103 116-223 10-132 (142)
152 KOG3785 Uncharacterized conser 93.0 1.7 3.7E-05 39.3 11.1 122 97-226 374-499 (557)
153 PLN02789 farnesyltranstransfer 92.9 6.5 0.00014 34.9 16.2 104 94-203 83-189 (320)
154 PRK15363 pathogenicity island 92.8 3.5 7.6E-05 32.8 11.7 91 125-220 43-133 (157)
155 smart00299 CLH Clathrin heavy 92.8 3.4 7.3E-05 31.4 12.5 111 86-215 11-121 (140)
156 smart00299 CLH Clathrin heavy 92.6 1.9 4.1E-05 32.8 9.8 89 119-218 9-97 (140)
157 COG1729 Uncharacterized protei 92.5 2.5 5.3E-05 36.5 11.1 100 119-223 144-248 (262)
158 PLN02789 farnesyltranstransfer 92.4 7.5 0.00016 34.5 15.7 116 95-217 50-169 (320)
159 PF10300 DUF3808: Protein of u 92.1 3.3 7.2E-05 38.7 12.5 119 95-219 246-376 (468)
160 COG5107 RNA14 Pre-mRNA 3'-end 92.1 1.1 2.5E-05 41.5 9.0 89 118-214 398-490 (660)
161 KOG1173 Anaphase-promoting com 92.0 2.3 5E-05 40.3 11.1 123 90-219 388-518 (611)
162 PF13525 YfiO: Outer membrane 92.0 5.3 0.00012 32.6 12.4 92 89-180 12-119 (203)
163 PLN03098 LPA1 LOW PSII ACCUMUL 91.7 0.75 1.6E-05 42.5 7.5 95 116-219 74-174 (453)
164 KOG3941 Intermediate in Toll s 91.5 2.5 5.4E-05 37.1 10.0 85 94-179 84-187 (406)
165 COG5107 RNA14 Pre-mRNA 3'-end 91.5 5.1 0.00011 37.4 12.5 125 88-221 403-533 (660)
166 PF12688 TPR_5: Tetratrico pep 91.5 4.8 0.0001 30.4 12.2 87 91-178 10-102 (120)
167 KOG0495 HAT repeat protein [RN 91.5 8.1 0.00018 37.7 14.2 92 124-221 591-682 (913)
168 PF09613 HrpB1_HrpK: Bacterial 91.0 6.9 0.00015 31.2 11.7 116 86-212 14-131 (160)
169 PF13170 DUF4003: Protein of u 90.9 4.3 9.3E-05 35.7 11.2 27 134-160 120-150 (297)
170 PF13170 DUF4003: Protein of u 90.7 6.6 0.00014 34.5 12.3 117 97-220 118-251 (297)
171 PRK10866 outer membrane biogen 90.5 6 0.00013 33.5 11.5 91 89-180 39-153 (243)
172 PF00637 Clathrin: Region in C 90.4 0.053 1.1E-06 41.6 -1.0 83 88-177 13-96 (143)
173 KOG2076 RNA polymerase III tra 90.2 22 0.00047 35.7 17.5 118 96-219 153-270 (895)
174 KOG0553 TPR repeat-containing 90.1 4.3 9.2E-05 35.6 10.3 96 93-195 92-187 (304)
175 PF04840 Vps16_C: Vps16, C-ter 90.0 2.6 5.7E-05 37.4 9.2 84 119-215 179-262 (319)
176 PRK14720 transcript cleavage f 89.9 14 0.0003 37.5 14.9 121 86-216 35-175 (906)
177 PRK04841 transcriptional regul 89.6 10 0.00022 37.8 14.1 124 93-218 463-601 (903)
178 KOG1125 TPR repeat-containing 89.5 7.9 0.00017 36.8 12.2 83 126-215 439-523 (579)
179 PRK04841 transcriptional regul 89.0 11 0.00024 37.5 13.9 126 92-219 501-641 (903)
180 COG3071 HemY Uncharacterized e 88.7 19 0.0004 32.9 15.0 120 95-220 97-217 (400)
181 TIGR02508 type_III_yscG type I 88.6 6 0.00013 29.3 8.6 61 125-195 47-107 (115)
182 KOG3785 Uncharacterized conser 88.6 4.1 8.8E-05 36.9 9.2 113 97-216 338-454 (557)
183 KOG0547 Translocase of outer m 88.4 9.3 0.0002 36.0 11.6 124 92-222 370-494 (606)
184 KOG3616 Selective LIM binding 88.3 5.9 0.00013 39.2 10.7 112 89-219 772-911 (1636)
185 KOG4570 Uncharacterized conser 87.9 3.4 7.4E-05 36.8 8.2 84 95-181 77-165 (418)
186 PF10300 DUF3808: Protein of u 87.7 12 0.00027 34.9 12.4 135 81-220 187-335 (468)
187 PF13525 YfiO: Outer membrane 87.5 5.6 0.00012 32.5 9.1 93 126-222 14-122 (203)
188 COG4235 Cytochrome c biogenesi 87.5 15 0.00033 32.1 12.0 97 85-181 159-257 (287)
189 PRK10866 outer membrane biogen 87.5 8.6 0.00019 32.6 10.4 74 124-201 39-115 (243)
190 PRK10153 DNA-binding transcrip 87.1 6.4 0.00014 37.3 10.3 64 116-180 419-482 (517)
191 PF13176 TPR_7: Tetratricopept 87.1 1.7 3.8E-05 25.1 4.3 25 153-177 1-25 (36)
192 COG4700 Uncharacterized protei 87.0 17 0.00036 30.3 14.5 119 87-214 94-217 (251)
193 KOG2376 Signal recognition par 86.4 25 0.00053 33.9 13.4 120 88-216 382-517 (652)
194 TIGR02561 HrpB1_HrpK type III 86.2 15 0.00032 29.1 10.5 104 87-201 15-120 (153)
195 KOG2047 mRNA splicing factor [ 86.0 8.5 0.00018 37.4 10.2 113 87-206 174-297 (835)
196 KOG1128 Uncharacterized conser 85.4 20 0.00044 35.2 12.6 28 192-219 555-582 (777)
197 KOG1914 mRNA cleavage and poly 85.1 15 0.00032 35.1 11.2 94 118-219 367-464 (656)
198 PRK15331 chaperone protein Sic 84.9 14 0.0003 29.6 9.7 87 89-179 44-133 (165)
199 COG1729 Uncharacterized protei 84.7 13 0.00029 32.1 10.1 90 90-180 149-244 (262)
200 PF14938 SNAP: Soluble NSF att 84.6 21 0.00045 30.7 11.6 58 120-178 158-223 (282)
201 KOG0553 TPR repeat-containing 84.6 14 0.00029 32.5 10.2 88 127-220 91-179 (304)
202 KOG0985 Vesicle coat protein c 84.5 50 0.0011 34.2 15.0 86 117-213 1104-1189(1666)
203 PF13428 TPR_14: Tetratricopep 84.3 2.8 6.1E-05 25.3 4.4 29 153-181 3-31 (44)
204 KOG4570 Uncharacterized conser 83.6 5.5 0.00012 35.5 7.4 97 116-218 63-163 (418)
205 COG3629 DnrI DNA-binding trans 83.6 8.2 0.00018 33.7 8.5 63 152-219 154-216 (280)
206 PF09613 HrpB1_HrpK: Bacterial 82.5 15 0.00032 29.3 8.9 54 126-181 19-74 (160)
207 PF11846 DUF3366: Domain of un 82.4 6.8 0.00015 31.6 7.3 34 188-221 142-175 (193)
208 KOG1128 Uncharacterized conser 82.2 5.9 0.00013 38.7 7.6 80 122-215 403-482 (777)
209 COG2178 Predicted RNA-binding 82.0 11 0.00024 31.1 8.1 99 117-218 29-149 (204)
210 KOG2796 Uncharacterized conser 81.8 20 0.00044 31.3 10.0 102 93-201 223-330 (366)
211 PF13428 TPR_14: Tetratricopep 81.4 3.8 8.3E-05 24.7 4.2 33 192-224 3-35 (44)
212 PF13374 TPR_10: Tetratricopep 80.9 4.4 9.5E-05 23.3 4.3 27 152-178 3-29 (42)
213 KOG1174 Anaphase-promoting com 80.8 41 0.00088 31.3 12.0 57 161-222 344-400 (564)
214 PF10602 RPN7: 26S proteasome 80.8 28 0.0006 28.0 10.7 96 118-219 37-142 (177)
215 PF13374 TPR_10: Tetratricopep 80.7 4.9 0.00011 23.1 4.5 28 118-145 3-30 (42)
216 KOG0548 Molecular co-chaperone 80.2 24 0.00051 33.4 10.6 102 92-200 12-114 (539)
217 PF00637 Clathrin: Region in C 80.2 0.23 5E-06 38.0 -2.1 87 122-219 12-99 (143)
218 PF12688 TPR_5: Tetratrico pep 79.8 24 0.00051 26.6 14.3 85 125-215 9-100 (120)
219 KOG2053 Mitochondrial inherita 79.7 12 0.00027 37.4 8.9 89 127-222 19-109 (932)
220 TIGR02561 HrpB1_HrpK type III 79.6 19 0.00041 28.5 8.4 50 130-181 23-74 (153)
221 PF04184 ST7: ST7 protein; In 79.5 34 0.00074 32.3 11.3 72 123-197 265-338 (539)
222 PRK14720 transcript cleavage f 79.2 78 0.0017 32.3 14.6 132 86-222 87-255 (906)
223 PF13176 TPR_7: Tetratricopept 79.2 4.3 9.3E-05 23.4 3.7 25 192-216 1-25 (36)
224 COG2178 Predicted RNA-binding 78.9 36 0.00077 28.2 10.3 85 94-179 41-149 (204)
225 KOG2280 Vacuolar assembly/sort 78.9 15 0.00033 36.2 9.1 106 87-214 689-794 (829)
226 PF08631 SPO22: Meiosis protei 78.4 42 0.00092 28.8 14.2 61 152-218 85-149 (278)
227 PF11207 DUF2989: Protein of u 77.8 27 0.00059 28.9 9.3 80 126-210 116-198 (203)
228 KOG0985 Vesicle coat protein c 77.6 65 0.0014 33.5 13.1 87 115-214 1131-1218(1666)
229 PF04053 Coatomer_WDAD: Coatom 77.5 34 0.00074 31.8 10.9 116 86-219 299-431 (443)
230 PF09205 DUF1955: Domain of un 77.4 33 0.00071 26.9 9.8 64 119-182 88-151 (161)
231 KOG0548 Molecular co-chaperone 77.3 46 0.001 31.6 11.5 89 91-179 307-420 (539)
232 KOG0543 FKBP-type peptidyl-pro 76.5 27 0.00059 31.9 9.6 120 91-216 217-352 (397)
233 COG4235 Cytochrome c biogenesi 76.5 52 0.0011 28.8 11.8 106 116-226 155-263 (287)
234 KOG0495 HAT repeat protein [RN 76.1 85 0.0018 31.0 16.6 132 84-221 518-649 (913)
235 PF13174 TPR_6: Tetratricopept 75.7 3.7 8.1E-05 22.4 2.7 23 199-221 9-31 (33)
236 PF11663 Toxin_YhaV: Toxin wit 75.4 2.5 5.4E-05 32.8 2.4 34 126-161 104-138 (140)
237 KOG3060 Uncharacterized conser 75.3 55 0.0012 28.4 13.4 121 94-221 98-222 (289)
238 PF11846 DUF3366: Domain of un 75.0 25 0.00055 28.3 8.5 30 115-144 142-171 (193)
239 PF07079 DUF1347: Protein of u 74.5 11 0.00023 35.3 6.5 71 94-164 91-180 (549)
240 COG4105 ComL DNA uptake lipopr 73.9 36 0.00079 29.2 9.3 49 130-178 47-98 (254)
241 KOG1174 Anaphase-promoting com 73.9 77 0.0017 29.5 16.9 121 92-219 344-500 (564)
242 KOG2047 mRNA splicing factor [ 73.8 95 0.0021 30.5 13.4 96 120-218 172-276 (835)
243 PRK15331 chaperone protein Sic 73.7 45 0.00098 26.7 9.8 88 126-218 46-133 (165)
244 KOG0543 FKBP-type peptidyl-pro 73.6 74 0.0016 29.2 16.3 90 87-179 262-354 (397)
245 PF14938 SNAP: Soluble NSF att 73.0 60 0.0013 27.8 16.7 128 92-220 84-226 (282)
246 KOG1125 TPR repeat-containing 72.9 53 0.0011 31.5 10.8 90 126-221 403-495 (579)
247 PF00515 TPR_1: Tetratricopept 72.3 14 0.00029 20.4 4.6 28 152-179 2-29 (34)
248 PF09205 DUF1955: Domain of un 71.9 46 0.001 26.1 13.2 62 153-219 88-149 (161)
249 PRK15180 Vi polysaccharide bio 71.9 46 0.001 31.6 10.0 122 94-223 301-424 (831)
250 KOG4162 Predicted calmodulin-b 71.2 48 0.001 32.9 10.4 96 112-212 319-416 (799)
251 PF13762 MNE1: Mitochondrial s 71.0 49 0.0011 26.0 10.9 82 118-203 40-128 (145)
252 KOG1156 N-terminal acetyltrans 70.9 1E+02 0.0022 30.2 12.2 126 89-219 378-511 (700)
253 COG3118 Thioredoxin domain-con 70.7 75 0.0016 28.0 13.7 60 87-147 139-198 (304)
254 PF04184 ST7: ST7 protein; In 69.3 37 0.0008 32.1 8.9 70 90-159 267-339 (539)
255 PF14689 SPOB_a: Sensor_kinase 69.2 13 0.00029 24.5 4.6 23 122-144 28-50 (62)
256 PF13929 mRNA_stabil: mRNA sta 69.0 81 0.0018 27.7 11.8 112 99-215 145-263 (292)
257 PF14689 SPOB_a: Sensor_kinase 68.4 17 0.00037 24.0 4.9 47 132-179 5-51 (62)
258 PF10602 RPN7: 26S proteasome 67.2 36 0.00077 27.3 7.6 65 151-219 36-102 (177)
259 PF08311 Mad3_BUB1_I: Mad3/BUB 66.7 24 0.00052 26.7 6.2 43 169-214 81-123 (126)
260 cd08819 CARD_MDA5_2 Caspase ac 65.9 46 0.001 23.8 7.3 38 129-170 48-85 (88)
261 PF11848 DUF3368: Domain of un 65.6 25 0.00055 21.8 5.1 18 130-147 15-32 (48)
262 KOG1538 Uncharacterized conser 64.7 38 0.00082 33.3 8.1 89 116-218 746-845 (1081)
263 KOG4340 Uncharacterized conser 63.7 21 0.00046 31.8 5.9 55 127-182 154-209 (459)
264 PF02284 COX5A: Cytochrome c o 63.5 22 0.00047 26.4 5.1 37 87-124 50-86 (108)
265 cd00923 Cyt_c_Oxidase_Va Cytoc 63.4 23 0.00049 26.0 5.1 37 87-124 47-83 (103)
266 COG4105 ComL DNA uptake lipopr 63.3 98 0.0021 26.6 15.5 59 159-219 175-233 (254)
267 PF10366 Vps39_1: Vacuolar sor 62.7 49 0.0011 24.4 7.0 26 120-145 42-67 (108)
268 PF02284 COX5A: Cytochrome c o 62.3 54 0.0012 24.3 6.9 61 135-200 28-89 (108)
269 PF10366 Vps39_1: Vacuolar sor 61.5 45 0.00097 24.6 6.6 51 153-205 41-94 (108)
270 PF07721 TPR_4: Tetratricopept 61.2 16 0.00035 19.3 3.2 20 195-214 6-25 (26)
271 PF11848 DUF3368: Domain of un 61.2 37 0.00081 21.1 5.3 35 160-198 11-45 (48)
272 PF09477 Type_III_YscG: Bacter 61.1 68 0.0015 24.1 8.6 86 97-194 21-107 (116)
273 PF09454 Vps23_core: Vps23 cor 60.8 32 0.00069 23.1 5.2 49 115-163 6-54 (65)
274 cd08819 CARD_MDA5_2 Caspase ac 60.4 59 0.0013 23.3 6.7 67 136-211 21-87 (88)
275 COG4455 ImpE Protein of avirul 60.2 51 0.0011 28.1 7.3 123 87-218 6-132 (273)
276 PF04053 Coatomer_WDAD: Coatom 60.0 21 0.00046 33.2 5.6 59 118-176 296-372 (443)
277 PF11663 Toxin_YhaV: Toxin wit 60.0 6.2 0.00014 30.6 1.8 33 162-200 106-138 (140)
278 cd00923 Cyt_c_Oxidase_Va Cytoc 59.6 68 0.0015 23.6 7.4 62 134-200 24-86 (103)
279 PRK10564 maltose regulon perip 59.4 21 0.00046 31.4 5.2 35 149-183 254-289 (303)
280 PF09868 DUF2095: Uncharacteri 59.2 39 0.00085 25.5 5.8 38 122-159 66-103 (128)
281 KOG3617 WD40 and TPR repeat-co 59.1 41 0.00089 34.0 7.4 95 116-219 725-829 (1416)
282 KOG4340 Uncharacterized conser 58.6 1.3E+02 0.0028 27.0 9.8 91 86-178 14-105 (459)
283 KOG3060 Uncharacterized conser 57.3 1.3E+02 0.0028 26.2 15.4 124 90-221 60-185 (289)
284 PF05944 Phage_term_smal: Phag 57.1 40 0.00086 26.0 5.8 49 120-183 32-80 (132)
285 smart00777 Mad3_BUB1_I Mad3/BU 55.7 64 0.0014 24.6 6.7 44 168-214 80-123 (125)
286 PF13762 MNE1: Mitochondrial s 55.4 1E+02 0.0022 24.2 8.9 56 115-171 77-134 (145)
287 COG4003 Uncharacterized protei 55.3 48 0.001 23.5 5.4 30 122-151 36-65 (98)
288 PF13181 TPR_8: Tetratricopept 55.1 24 0.00052 19.3 3.4 28 192-219 3-30 (34)
289 KOG0276 Vesicle coat complex C 55.0 2.2E+02 0.0047 28.0 11.7 105 92-220 647-751 (794)
290 PF14669 Asp_Glu_race_2: Putat 54.6 48 0.001 27.6 6.1 71 155-225 136-217 (233)
291 PF13281 DUF4071: Domain of un 54.2 1.7E+02 0.0038 26.6 11.6 98 99-200 120-227 (374)
292 PF07719 TPR_2: Tetratricopept 53.8 34 0.00075 18.4 4.2 22 157-178 7-28 (34)
293 COG3898 Uncharacterized membra 53.3 1.9E+02 0.0042 26.9 10.5 81 95-179 133-216 (531)
294 KOG4162 Predicted calmodulin-b 53.2 2.5E+02 0.0054 28.1 14.7 122 86-214 654-778 (799)
295 PRK11906 transcriptional regul 52.6 1.8E+02 0.0039 27.3 10.2 83 132-219 319-401 (458)
296 KOG0624 dsRNA-activated protei 52.5 1.9E+02 0.0041 26.5 14.2 94 125-224 114-223 (504)
297 PF01335 DED: Death effector d 52.5 47 0.001 23.0 5.2 41 169-214 38-78 (84)
298 cd00280 TRFH Telomeric Repeat 51.8 99 0.0022 25.5 7.5 19 126-144 120-138 (200)
299 COG3947 Response regulator con 50.2 90 0.002 27.7 7.5 48 153-205 281-328 (361)
300 COG4455 ImpE Protein of avirul 50.1 62 0.0013 27.6 6.2 77 119-200 3-82 (273)
301 COG0457 NrfG FOG: TPR repeat [ 50.0 1E+02 0.0022 22.8 15.7 86 92-179 140-230 (291)
302 TIGR03504 FimV_Cterm FimV C-te 49.4 34 0.00074 21.0 3.6 24 124-147 6-29 (44)
303 KOG2908 26S proteasome regulat 49.2 2E+02 0.0044 26.0 9.7 76 89-164 82-169 (380)
304 smart00028 TPR Tetratricopepti 49.1 34 0.00073 16.9 3.8 26 153-178 3-28 (34)
305 KOG1127 TPR repeat-containing 48.2 1.7E+02 0.0037 30.3 9.8 91 88-179 532-624 (1238)
306 KOG4648 Uncharacterized conser 48.2 33 0.00072 31.1 4.6 112 90-212 105-217 (536)
307 PF11817 Foie-gras_1: Foie gra 47.6 1.7E+02 0.0037 24.6 9.6 59 156-217 183-245 (247)
308 PF11207 DUF2989: Protein of u 47.4 1.6E+02 0.0036 24.4 8.5 71 100-171 124-198 (203)
309 KOG2610 Uncharacterized conser 46.9 1.2E+02 0.0025 27.7 7.7 86 129-219 115-204 (491)
310 PF13431 TPR_17: Tetratricopep 46.9 23 0.0005 20.1 2.4 22 116-137 12-33 (34)
311 KOG2908 26S proteasome regulat 46.5 1.1E+02 0.0023 27.7 7.5 57 159-218 83-143 (380)
312 KOG2396 HAT (Half-A-TPR) repea 46.1 41 0.0009 31.8 5.1 37 188-224 457-494 (568)
313 PF09454 Vps23_core: Vps23 cor 46.0 80 0.0017 21.1 5.3 51 149-204 6-56 (65)
314 PF10579 Rapsyn_N: Rapsyn N-te 45.3 64 0.0014 22.7 4.8 16 94-109 18-33 (80)
315 COG0457 NrfG FOG: TPR repeat [ 45.2 1.2E+02 0.0027 22.3 16.1 84 92-177 69-156 (291)
316 cd08336 DED_FADD Death Effecto 45.1 61 0.0013 22.6 4.8 42 166-212 37-78 (82)
317 KOG3617 WD40 and TPR repeat-co 44.2 1.1E+02 0.0024 31.1 7.8 70 94-177 924-993 (1416)
318 cd00280 TRFH Telomeric Repeat 43.9 1.8E+02 0.0039 24.0 7.8 43 156-205 116-158 (200)
319 PF08311 Mad3_BUB1_I: Mad3/BUB 42.4 85 0.0018 23.6 5.6 42 135-176 81-124 (126)
320 KOG1538 Uncharacterized conser 42.1 1E+02 0.0022 30.5 7.1 79 93-181 758-847 (1081)
321 KOG2610 Uncharacterized conser 42.1 2.7E+02 0.0059 25.4 11.3 112 96-213 117-232 (491)
322 PF13934 ELYS: Nuclear pore co 42.1 83 0.0018 26.3 6.0 21 123-143 114-134 (226)
323 PF02847 MA3: MA3 domain; Int 41.9 75 0.0016 22.9 5.2 24 85-108 5-28 (113)
324 PF06576 DUF1133: Protein of u 41.7 67 0.0014 25.9 5.0 20 151-170 116-135 (176)
325 TIGR02508 type_III_yscG type I 41.5 64 0.0014 24.0 4.5 62 89-156 46-107 (115)
326 PF10579 Rapsyn_N: Rapsyn N-te 40.9 71 0.0015 22.4 4.5 45 129-173 18-65 (80)
327 KOG2114 Vacuolar assembly/sort 40.5 4.1E+02 0.009 27.0 11.2 47 157-208 403-449 (933)
328 KOG0550 Molecular chaperone (D 40.5 1.8E+02 0.0039 27.1 8.1 91 125-222 257-353 (486)
329 PRK14956 DNA polymerase III su 40.5 2.8E+02 0.006 26.3 9.7 34 150-183 247-280 (484)
330 PF02607 B12-binding_2: B12 bi 40.1 67 0.0015 21.5 4.4 39 163-205 13-51 (79)
331 cd08326 CARD_CASP9 Caspase act 39.8 1.3E+02 0.0028 21.1 6.7 52 116-170 29-80 (84)
332 KOG1127 TPR repeat-containing 39.8 2.5E+02 0.0054 29.3 9.5 117 97-219 507-625 (1238)
333 KOG0624 dsRNA-activated protei 39.7 3E+02 0.0066 25.2 14.5 126 91-221 115-254 (504)
334 cd08779 Death_PIDD Death Domai 38.8 1.1E+02 0.0024 21.4 5.4 41 168-213 43-83 (86)
335 KOG1585 Protein required for f 38.6 2.7E+02 0.0058 24.3 9.0 119 93-214 121-251 (308)
336 smart00005 DEATH DEATH domain, 38.4 1.1E+02 0.0023 20.9 5.3 41 166-212 45-85 (88)
337 KOG4555 TPR repeat-containing 38.3 1.5E+02 0.0034 23.3 6.4 54 126-179 52-105 (175)
338 cd08332 CARD_CASP2 Caspase act 37.5 1.5E+02 0.0032 21.0 6.4 38 129-169 46-83 (90)
339 cd08318 Death_NMPP84 Death dom 37.3 61 0.0013 22.7 3.9 23 191-213 64-86 (86)
340 cd01670 Death Death Domain: a 37.0 88 0.0019 20.8 4.6 40 167-212 38-77 (79)
341 COG3947 Response regulator con 37.0 1.8E+02 0.0039 25.9 7.3 62 118-179 276-341 (361)
342 KOG0403 Neoplastic transformat 36.9 1.8E+02 0.004 27.5 7.6 73 123-203 515-587 (645)
343 KOG1920 IkappaB kinase complex 36.8 4.7E+02 0.01 27.7 11.1 89 112-216 931-1025(1265)
344 KOG4648 Uncharacterized conser 36.6 3.2E+02 0.0069 25.1 8.9 52 126-178 106-158 (536)
345 cd00045 DED The Death Effector 36.5 51 0.0011 22.7 3.3 42 166-212 35-76 (77)
346 COG5108 RPO41 Mitochondrial DN 36.4 2.1E+02 0.0046 28.5 8.2 94 82-177 28-129 (1117)
347 smart00031 DED Death effector 36.3 55 0.0012 22.6 3.4 42 167-213 37-78 (79)
348 cd08326 CARD_CASP9 Caspase act 36.3 1.5E+02 0.0033 20.8 6.1 64 136-210 18-81 (84)
349 cd08317 Death_ank Death domain 35.8 1E+02 0.0023 21.3 4.8 40 167-212 44-83 (84)
350 PF04124 Dor1: Dor1-like famil 35.5 3.2E+02 0.0068 24.2 9.8 25 87-111 111-135 (338)
351 COG4700 Uncharacterized protei 34.8 2.7E+02 0.0059 23.3 12.6 105 115-222 87-192 (251)
352 COG5108 RPO41 Mitochondrial DN 34.8 2.2E+02 0.0047 28.4 8.0 74 122-202 33-115 (1117)
353 PF13929 mRNA_stabil: mRNA sta 34.5 3.2E+02 0.007 24.0 10.3 90 88-181 170-264 (292)
354 PF00531 Death: Death domain; 34.1 48 0.001 22.3 2.9 43 167-215 40-82 (83)
355 PF10363 DUF2435: Protein of u 33.6 86 0.0019 22.4 4.1 45 166-218 40-84 (92)
356 KOG0687 26S proteasome regulat 33.2 1.8E+02 0.004 26.2 6.8 122 87-214 109-245 (393)
357 PRK11906 transcriptional regul 33.0 4.2E+02 0.0091 24.9 11.0 91 116-213 337-430 (458)
358 COG3898 Uncharacterized membra 32.5 4.2E+02 0.0091 24.7 13.7 114 95-217 97-215 (531)
359 PF03745 DUF309: Domain of unk 31.9 1.5E+02 0.0033 19.4 5.9 47 127-173 9-61 (62)
360 KOG2114 Vacuolar assembly/sort 31.7 3.7E+02 0.008 27.4 9.2 78 92-175 378-455 (933)
361 cd08340 DED_c-FLIP_repeat2 Dea 31.5 1E+02 0.0022 21.5 4.2 42 166-212 37-78 (81)
362 KOG1114 Tripeptidyl peptidase 30.8 6.4E+02 0.014 26.3 11.8 101 120-224 1177-1301(1304)
363 KOG3807 Predicted membrane pro 30.5 1.7E+02 0.0037 26.6 6.2 75 133-221 232-306 (556)
364 cd08789 CARD_IPS-1_RIG-I Caspa 30.2 1.8E+02 0.0038 20.4 5.2 38 129-170 44-81 (84)
365 cd08332 CARD_CASP2 Caspase act 30.2 2E+02 0.0043 20.3 6.8 65 137-212 23-87 (90)
366 PF02847 MA3: MA3 domain; Int 30.0 68 0.0015 23.1 3.3 62 121-183 6-69 (113)
367 KOG1920 IkappaB kinase complex 30.0 2.8E+02 0.006 29.3 8.3 79 88-176 971-1051(1265)
368 PF04124 Dor1: Dor1-like famil 29.7 74 0.0016 28.3 4.0 35 122-156 111-147 (338)
369 smart00638 LPD_N Lipoprotein N 29.4 5E+02 0.011 24.6 11.1 55 152-209 419-479 (574)
370 KOG0991 Replication factor C, 29.2 3.8E+02 0.0083 23.3 8.5 34 149-183 237-270 (333)
371 cd08812 CARD_RIG-I_like Caspas 28.4 1.8E+02 0.0039 20.5 5.0 37 131-170 48-85 (88)
372 PF12796 Ank_2: Ankyrin repeat 28.3 1.6E+02 0.0035 19.7 4.8 53 122-183 28-84 (89)
373 PRK13713 conjugal transfer pro 28.3 2.6E+02 0.0057 21.1 6.5 43 115-162 23-67 (118)
374 PF11123 DNA_Packaging_2: DNA 28.2 1.8E+02 0.0039 20.3 4.7 13 166-178 60-72 (82)
375 PF13281 DUF4071: Domain of un 28.2 4.6E+02 0.01 23.9 15.9 138 87-225 146-340 (374)
376 PF11817 Foie-gras_1: Foie gra 28.1 3.3E+02 0.0071 22.8 7.5 21 88-108 184-204 (247)
377 PF07443 HARP: HepA-related pr 27.7 26 0.00056 22.8 0.5 31 133-163 8-39 (55)
378 cd08333 DED_Caspase_8_repeat1 27.4 1.2E+02 0.0026 21.2 4.0 45 165-214 34-78 (82)
379 KOG1586 Protein required for f 27.1 2E+02 0.0044 24.8 5.8 13 96-108 28-40 (288)
380 PF07827 KNTase_C: KNTase C-te 27.1 1.8E+02 0.004 22.7 5.1 97 115-218 16-119 (143)
381 PRK09857 putative transposase; 26.6 4.3E+02 0.0093 23.0 10.0 64 120-183 209-272 (292)
382 PF11768 DUF3312: Protein of u 26.6 3E+02 0.0064 26.5 7.4 23 122-144 413-435 (545)
383 PF12862 Apc5: Anaphase-promot 26.4 2.3E+02 0.005 19.8 7.0 22 158-179 48-69 (94)
384 PRK10564 maltose regulon perip 26.3 1.4E+02 0.003 26.4 4.9 33 115-147 254-287 (303)
385 COG2987 HutU Urocanate hydrata 26.2 56 0.0012 30.6 2.6 68 130-213 216-288 (561)
386 PRK14962 DNA polymerase III su 25.8 5.6E+02 0.012 24.0 11.2 47 153-204 246-292 (472)
387 cd08338 DED_PEA15 Death Effect 25.8 1.7E+02 0.0038 20.5 4.5 43 166-213 37-79 (84)
388 smart00804 TAP_C C-terminal do 25.2 82 0.0018 20.9 2.6 16 132-147 40-55 (63)
389 KOG1586 Protein required for f 25.0 4.5E+02 0.0099 22.7 11.0 52 163-218 166-223 (288)
390 cd08792 DED_Caspase_8_10_repea 25.0 1.2E+02 0.0027 20.8 3.6 40 166-210 35-74 (77)
391 cd08790 DED_DEDD Death Effecto 24.8 1.4E+02 0.003 21.8 3.9 55 128-183 35-89 (97)
392 PF10475 DUF2450: Protein of u 24.5 4.6E+02 0.01 22.6 9.3 80 120-209 130-216 (291)
393 PF11768 DUF3312: Protein of u 24.4 3.4E+02 0.0073 26.1 7.4 92 84-176 410-519 (545)
394 KOG0403 Neoplastic transformat 24.4 3.3E+02 0.0072 25.8 7.1 75 86-164 513-587 (645)
395 COG2040 MHT1 Homocysteine/sele 24.3 1.4E+02 0.0029 26.4 4.4 67 141-214 19-86 (300)
396 KOG1550 Extracellular protein 24.2 5.1E+02 0.011 24.7 8.8 19 127-145 259-277 (552)
397 PF11838 ERAP1_C: ERAP1-like C 23.9 4.5E+02 0.0098 22.3 12.6 108 98-214 146-261 (324)
398 cd04445 DEP_PLEK1 DEP (Disheve 23.3 1.6E+02 0.0034 21.5 3.9 52 97-149 11-68 (99)
399 cd08318 Death_NMPP84 Death dom 23.2 2E+02 0.0043 20.1 4.5 41 98-140 46-86 (86)
400 smart00386 HAT HAT (Half-A-TPR 22.6 1.3E+02 0.0028 15.5 4.3 12 133-144 3-14 (33)
401 KOG2280 Vacuolar assembly/sort 22.5 5.7E+02 0.012 25.7 8.6 86 119-217 686-771 (829)
402 cd07153 Fur_like Ferric uptake 22.5 2.4E+02 0.0052 20.2 5.1 45 123-167 6-51 (116)
403 cd07153 Fur_like Ferric uptake 22.1 2E+02 0.0044 20.7 4.6 48 87-135 5-53 (116)
404 cd08775 DED_Caspase-like_repea 22.0 1.9E+02 0.0042 20.1 4.2 40 166-210 37-76 (81)
405 cd08316 Death_FAS_TNFRSF6 Deat 22.0 2.6E+02 0.0057 20.2 5.0 46 167-218 49-94 (97)
406 cd08780 Death_TRADD Death Doma 21.9 3.1E+02 0.0067 19.7 5.3 49 90-140 40-88 (90)
407 KOG4104 Ganglioside-induced di 21.6 1.2E+02 0.0027 22.0 3.1 31 186-216 58-88 (113)
408 smart00544 MA3 Domain in DAP-5 21.6 3.1E+02 0.0067 19.6 9.6 25 85-109 5-29 (113)
409 cd08791 DED_DEDD2 Death Effect 21.5 1.6E+02 0.0034 21.8 3.6 57 132-193 48-104 (106)
410 KOG2911 Uncharacterized conser 21.5 1.4E+02 0.003 27.7 4.1 57 133-210 147-208 (439)
411 cd01671 CARD Caspase activatio 21.2 2.6E+02 0.0056 18.6 7.3 64 135-209 14-77 (80)
412 COG4865 Glutamate mutase epsil 21.1 5.4E+02 0.012 23.4 7.6 77 97-181 31-118 (485)
413 COG4865 Glutamate mutase epsil 20.8 4.5E+02 0.0097 24.0 7.0 89 98-201 72-168 (485)
414 PF07218 RAP1: Rhoptry-associa 20.8 3.1E+02 0.0066 26.6 6.3 110 97-218 595-757 (782)
415 TIGR00510 lipA lipoate synthas 20.5 92 0.002 27.4 2.7 72 139-219 158-234 (302)
416 PRK08691 DNA polymerase III su 20.4 7.6E+02 0.016 24.7 9.1 53 130-183 211-277 (709)
417 PLN03025 replication factor C 20.3 5.7E+02 0.012 22.1 12.1 46 150-201 224-269 (319)
418 PHA02053 hypothetical protein 20.2 1.5E+02 0.0033 21.7 3.3 22 43-64 15-36 (115)
419 cd08334 DED_Caspase_8_10_repea 20.1 2.2E+02 0.0048 19.8 4.2 41 166-212 38-78 (83)
420 PRK12928 lipoyl synthase; Prov 20.1 1.2E+02 0.0026 26.5 3.3 57 122-181 176-232 (290)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=1.2e-25 Score=223.15 Aligned_cols=183 Identities=12% Similarity=0.106 Sum_probs=155.5
Q ss_pred CCCcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCC-CCchHHhhhh------------------
Q 026993 20 HKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL------------------ 80 (229)
Q Consensus 20 ~~p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~-~~~~~~~~~l------------------ 80 (229)
..|+..|++.++...|.- | ...+|..+++.|.+. +..|+ ..++.++..+
T Consensus 575 i~PD~vTynaLI~ay~k~----G-------~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 575 IDPDHITVGALMKACANA----G-------QVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred CCCcHHHHHHHHHHHHHC----C-------CHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 357888899999888872 1 126788888888874 45554 2233333322
Q ss_pred --hhhcH---HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHH
Q 026993 81 --IKHDL---LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRG 153 (229)
Q Consensus 81 --~~~d~---~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~t 153 (229)
+.+|. ..++..|++.|++++|+++|+.|.+. +. ||..+||+||++|+++|++++|.++|++|.+.| .||.++
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 23442 36799999999999999999999887 77 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
||+||.+||+.|++++|+++|++|.+.|+. ||.+||++||++|++.|++++|.+++.+|.+.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~----Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLC----PNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999997 99999999999999999999999999999886
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=1.3e-25 Score=223.01 Aligned_cols=181 Identities=13% Similarity=0.203 Sum_probs=136.8
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCC-CCchHHhhhh--------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL-------------------- 80 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~-~~~~~~~~~l-------------------- 80 (229)
|+..|++.++...|... ...+|.++++.|++. +..|+ ..++..+..+
T Consensus 435 pd~~Tyn~LL~a~~k~g-----------~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQ-----------DIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred CCHHHHHHHHHHHHhCc-----------CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 67777777777776621 225788889888884 46665 2233322222
Q ss_pred hhhcH---HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CC-CCCHHH
Q 026993 81 IKHDL---LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE--ID-GGDGRG 153 (229)
Q Consensus 81 ~~~d~---~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~--~g-~pd~~t 153 (229)
+.+|. ..+|.+|++.|++++|+++|++|++. +. ||.++||+||++|++.|++++|.++|++|.+ .| .||.+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 12332 35788888888888888888888766 67 8888888888888888888888888888875 46 788888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
||+||.+|++.|++++|.++|++|.+.|+. ||.+||++||++|++.|++++|.++|++|.+.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~----p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIK----GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 888888888888888888888888888886 88888888888888888888888888888775
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=7.2e-26 Score=217.99 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-chHHhhhhhhhcHHHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHh
Q 026993 52 TEAIQAVQFLKRAHKQNPQNP-TYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAK 129 (229)
Q Consensus 52 ~ea~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~d~~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k 129 (229)
.+|..+++.|.+. +..|+.+ +. .++.+|++.|++++|.++|..|.+. +. ||..+||+||++|+|
T Consensus 307 ~eA~~lf~~M~~~-g~~pd~~t~~------------~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k 372 (697)
T PLN03081 307 EEALCLYYEMRDS-GVSIDQFTFS------------IMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHH------------HHHHHHHhccchHHHHHHHHHHHHhCCC-CCeeehHHHHHHHHH
Confidence 5677777777663 4555522 22 3344444444444444444444443 34 444444444444444
Q ss_pred cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 026993 130 NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA 209 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A 209 (229)
+|++++|.++|++|.+ ||++|||+||.||++.|+.++|+++|++|.+.|+. ||.+||++||++|++.|.+++|
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~----Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA----PNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHhcCCcHHHH
Confidence 4444444444444442 34444444444444444444444444444444443 4444444444444444444444
Q ss_pred HHHHHHhh
Q 026993 210 NEVEREFC 217 (229)
Q Consensus 210 ~~v~~e~~ 217 (229)
.++|++|.
T Consensus 446 ~~~f~~m~ 453 (697)
T PLN03081 446 WEIFQSMS 453 (697)
T ss_pred HHHHHHHH
Confidence 44444443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=211.93 Aligned_cols=178 Identities=15% Similarity=0.066 Sum_probs=142.5
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHhhhh--------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQN-PTYPSLSRL-------------------- 80 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~~-~~~~~~~~l-------------------- 80 (229)
|+..+++.++...|.- ....+|..+++.|.+. +..|+. .+...+...
T Consensus 187 ~~~~t~n~li~~~~~~-----------g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 187 RNLASWGTIIGGLVDA-----------GNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred CCeeeHHHHHHHHHHC-----------cCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 4566666666655551 1236899999999874 455552 232222211
Q ss_pred hhhcH---HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHH
Q 026993 81 IKHDL---LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSR 156 (229)
Q Consensus 81 ~~~d~---~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~ 156 (229)
+.+|. .+++..|++.|++++|.++|+.|.+ +|+++||+||.+|++.|+.++|.++|++|.+.| .||.+||++
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 12222 4678999999999999999998865 899999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+|++.|++++|.++|++|.+.|+. ||.++||+||++|++.|++++|.++|++|.+.
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~----~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFP----LDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCC----CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999987 89999999999999999999999999888753
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.90 E-value=1.7e-23 Score=205.56 Aligned_cols=178 Identities=18% Similarity=0.104 Sum_probs=144.9
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCCCC-chHHhhhh--------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNP-TYPSLSRL-------------------- 80 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~~~-~~~~~~~l-------------------- 80 (229)
|+..+++.++...|.. ....+|..+++.|.+. +..|+.+ +...+...
T Consensus 150 ~d~~~~n~li~~~~~~-----------g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g 217 (857)
T PLN03077 150 RDLFSWNVLVGGYAKA-----------GYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217 (857)
T ss_pred CCeeEHHHHHHHHHhC-----------CCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence 4555566555555541 1247899999999884 5777733 33322211
Q ss_pred hhhc---HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHH
Q 026993 81 IKHD---LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSR 156 (229)
Q Consensus 81 ~~~d---~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~ 156 (229)
+.+| ..+++..|++.|+++.|.++|++|.+ ||+++||+||.+|++.|+.++|.++|++|.+.| .||.+|||+
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 1122 24688999999999999999999965 899999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+|++.|+.+.|.+++.+|.+.|+. ||.+|||+||++|++.|++++|.++|++|.+-
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~----~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFA----VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCc----cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 999999999999999999999999997 99999999999999999999999999998753
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.90 E-value=4.2e-23 Score=202.84 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=147.8
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHhhhhhh------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQN-PTYPSLSRLIK------------------ 82 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~~-~~~~~~~~l~~------------------ 82 (229)
|+..+++.++...|.- + ...||..+++.|.. +..|+. .+...+....+
T Consensus 453 ~d~vs~~~mi~~~~~~----g-------~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 KDVISWTSIIAGLRLN----N-------RCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred CCeeeHHHHHHHHHHC----C-------CHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 5778888888877762 1 23689999999976 355663 23333332211
Q ss_pred --hc---HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHH
Q 026993 83 --HD---LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSR 156 (229)
Q Consensus 83 --~d---~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~ 156 (229)
.| ..++++.|+|.|++++|+++|+.| . ||+++||+||.+|++.|+.++|.++|++|.+.| .||.+||++
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~-~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc----C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 11 136789999999999999999988 3 999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-HcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 157 VVRAVVEAGSKESTVRIYGLMK-RSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~-~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
||.+|++.|++++|.++|++|. +.|+. ||..||++|+++|++.|++++|.+++++|.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~----P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSIT----PNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 9999999999999999999998 67987 999999999999999999999999999985
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.72 E-value=1.8e-17 Score=106.93 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
||+++||+||++||+.|++++|+++|++|++.|+. ||.+||++||+||||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~----P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK----PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888886 888888888888875
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=5e-17 Score=104.87 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVE 163 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~ 163 (229)
||+++||+||++|++.|++++|.++|++|.++| .||.+|||+||+||||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 9999999999999986
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.28 E-value=3.8e-12 Score=75.47 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 148 GGDGRGLSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 148 ~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
.||.+|||+||++||+.|++++|+++|++|
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 344444444444444444444444444443
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=3.7e-11 Score=71.20 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=31.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 180 SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 180 ~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
+|+. ||.+|||+||+|||+.|++++|.++|+||+
T Consensus 1 ~G~~----Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCE----PDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCC----CcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4776 999999999999999999999999999985
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.05 E-value=1.1e-08 Score=91.28 Aligned_cols=121 Identities=13% Similarity=0.017 Sum_probs=69.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|.++|+++.+.+ .....+|+.++.+|++.|+.++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 3455666666666666544322 234455556666666666666666666665443 22234566666666666666666
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|+++.+.. ||..++..+...+.+.|++++|.++++++-+.
T Consensus 269 ~~~l~~~~~~~------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 269 LEFLRRALEEY------PGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHhC------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666665542 55555566666666666666666666655444
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.90 E-value=8.8e-08 Score=85.55 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
..+...+.+.|++++|...|+++.+....+...|..+...|++.|++++|.++|+++.+.+-. ....+++.+..+|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~l~~~~ 259 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE----YLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh----hHHHHHHHHHHHH
Confidence 344444455555555555555554332112344555555555555555555555555543211 1123455555555
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 026993 201 RRFGEEELANEVEREFCWV 219 (229)
Q Consensus 201 ~~~g~~~~A~~v~~e~~~~ 219 (229)
++.|+.++|.+.++++.+.
T Consensus 260 ~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555444
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3.5e-08 Score=88.69 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~ 163 (229)
..+|.++||-..++.|.+++++-+.. .+ .+.-+||.+|.+-.-... .++..+|.+.. .||..|||+++....+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 35799999999999999999998876 66 888999999976443222 78999999988 9999999999999999
Q ss_pred cCCHHH----HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 026993 164 AGSKES----TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL-ANEVEREFCW 218 (229)
Q Consensus 164 ~g~~~~----A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~-A~~v~~e~~~ 218 (229)
.|+++. |.++..+|++-|+. |..-+|--+|+-+++.++... |--++.|.++
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVe----PsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVE----PSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCC----cchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 998875 56788999999996 999999999999999998744 5555555555
No 14
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.84 E-value=5.1e-09 Score=61.15 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
++||+||++|++.|++++|.++|++|.+.|+. ||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~----p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIE----PDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CCC
Confidence 47899999999999999999999999988886 873
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=5.8e-08 Score=87.33 Aligned_cols=101 Identities=15% Similarity=0.044 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
...||.+||.|+||--..+.|.+++.+-.+.. +.+.-+||.+|.+-.-.. ..++..+|...... ||..|||
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~----Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT----PNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC----CchHhHH
Confidence 45789999999999999999999999987665 889999999998765433 37889999999887 9999999
Q ss_pred HHHHHHHhcCCHHHH----HHHHHHhhhc-CCCCC
Q 026993 195 VLSKGLRRFGEEELA----NEVEREFCWV-PGGSL 224 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A----~~v~~e~~~~-~~~~~ 224 (229)
+++++..+.|+++.| .+++.||+++ ..|+|
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcch
Confidence 999999999999886 5677799987 44443
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.76 E-value=6.6e-07 Score=86.36 Aligned_cols=126 Identities=9% Similarity=-0.033 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+.+++.+.+... .+..+|..+...|.+.|++++|...|+++.+....+...|..+...|.+.|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 34445556666666666666544333 44556666666666666666666666666544322345566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
++|.++|+++.+..- .+..++..+...+...|++++|.++++.+.+.
T Consensus 652 ~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 652 AKAITSLKRALELKP-----DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666654321 34555555666666666666666666555544
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.74 E-value=1.4e-08 Score=59.29 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDG 151 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~ 151 (229)
++||+||++|++.|++++|.++|++|.+.| .||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 479999999999999999999999999999 9984
No 18
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.73 E-value=1.1e-08 Score=58.38 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
+|||+||++|++.|++++|.++|++|.+.||
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4677777777777777777777777777764
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.71 E-value=1.2e-06 Score=84.50 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=77.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+..|+.+.+... .+...|..+...|.+.|+.++|...|+++.+....+..+|+.++..++..|++
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 44555666777777777766654333 34555666666666677777777776666544323456666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
++|.++++.|.+.+. .+..++..+...+.+.|++++|.+.++++-+.
T Consensus 686 ~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 686 ESAKKIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 666666666665543 45555666666666666666666666655444
No 20
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.63 E-value=5.6e-08 Score=56.67 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
+|||++|.+|++.|+++.|.++|++|++.|+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 57888888888888888888888888888875
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.51 E-value=1e-07 Score=54.24 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
++||+||++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 589999999999999999999999999875
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.51 E-value=2.5e-05 Score=63.09 Aligned_cols=127 Identities=12% Similarity=-0.035 Sum_probs=102.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC-CHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG-DGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p-d~~tyn~lI~~~~~~g 165 (229)
+-..+...|+++.|.+.|+...+... .+...+..+-..|...|++++|.+.|++..... .+ +...|..+-..+.+.|
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 44556788999999999988866444 456778888889999999999999999987654 23 3457777888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
++++|.+.|.+..+..- .+...+..+...+...|+.++|.+.+++..+..
T Consensus 150 ~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDP-----QRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred CHHHHHHHHHHHHHhCc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999887542 346678888999999999999999999887763
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.50 E-value=1.8e-07 Score=54.47 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG 149 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p 149 (229)
+.+||++|.+|++.|+++.|.++|++|++.| +|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998 77
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.44 E-value=4.6e-05 Score=61.53 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
+-..+...|++++|.+.|+..... .. .+...+..+-..|.+.|++++|...|++..+....+...|..+...+.+.|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 345567889999999999998754 22 345567778888999999999999999987654234668889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
++++|.+.|++..+. .. .+...+..+...+...|+.++|..+.+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YN----QTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CHHHHHHHHHHHHHh-CC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999876 33 566777788899999999999999988877653
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.28 E-value=8.3e-06 Score=70.19 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=84.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|+.++|+..++...+... -|....+.++..+...|+.+++.+++....+....|...|..+-.+|...|+.+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 3456788999999999988865332 257788899999999999999999998887654234567889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
+|+.+|++..+..- -|..+...+-+.+...|+.++|.++.++.-
T Consensus 232 ~Al~~~~~~~~~~p-----~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 232 EALEYLEKALKLNP-----DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHST-----T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccc-----cccccccccccccccccccccccccccccc
Confidence 99999999887542 477888899999999999999999887653
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=98.17 E-value=0.00024 Score=67.36 Aligned_cols=125 Identities=14% Similarity=0.011 Sum_probs=94.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~~~ 169 (229)
.+...|++++|...|+...+... .+...|..+-..|...|+.++|...|++..+.. |+. ..+..+...+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHH
Confidence 35678999999999988765322 245678888888999999999999999987664 332 233445556778899999
Q ss_pred HHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|.+.+.+..+..- |+. ..+..+-..+...|+.++|.+.++++....+.
T Consensus 425 A~~~~~~~l~~~~-----p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 425 AIRLGDELRSQHL-----QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHHHHHhcc-----ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999999876542 443 34566777888999999999999887666554
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.13 E-value=0.00034 Score=66.95 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=100.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+...|++++|+..|+...+... -+..+|..+-..|...|++++|...|++..+....+...|..+-..+.+.|++
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 34445678899999999888765433 35677888888899999999999999988765423567788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|+..|++..+.. + -+...|+.+-..+...|++++|.+.|+..-+..+.
T Consensus 450 ~eA~~~~~~al~~~-P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 450 ASSMATFRRCKKNF-P----EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHHHhC-C----CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999887643 1 24667788888999999999999999887776543
No 28
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=0.00012 Score=49.66 Aligned_cols=95 Identities=18% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKG 199 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~ 199 (229)
|..+...+.+.|++++|...|.+..+....+...|..+-..+...|++++|.+.|.+.....- .+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-----DNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----cchhHHHHHHHH
Confidence 444555666677777777777776554322335666667777777777777777777665442 344566666677
Q ss_pred HHhcCCHHHHHHHHHHhhhc
Q 026993 200 LRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~~ 219 (229)
+...|+.+.|.+.+.+..+.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHhHHHHHHHHHHHHcc
Confidence 77777777777777666544
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.09 E-value=0.0004 Score=66.48 Aligned_cols=125 Identities=8% Similarity=-0.133 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
.+...|++++|+..|+...+. . |+ ...|..+-..|...|++++|...|++..+...-+...|..+-..|...|++++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l-~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL-D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 456789999999999887653 3 54 55788888999999999999999999876542356789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|.+.|++..+..- .+...+..+-..+.+.|+.++|...+++..+..+.
T Consensus 418 A~~~~~kal~l~P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 418 AGKDYQKSIDLDP-----DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHcCc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999887542 35677888888999999999999999988776543
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.09 E-value=0.00062 Score=65.90 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=71.3
Q ss_pred HHhcCCHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 92 LIRQGECAV----AVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 92 l~~~g~~~~----A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+.+.|+.++ |+..|+...+... .+...+..+-..|.+.|++++|...+++..+...-+...+..+-..|.+.|++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 444555553 5555555543222 23456666666677777777777777666544311244555666667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYV-GKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~T-y~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.+.|.++.+.. |+... +..+...+...|+.++|.+.|++.-+..+
T Consensus 335 ~eA~~~l~~al~~~------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 335 TAASDEFVQLAREK------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHhC------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77777777666542 44333 22234556677777777777776655433
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.08 E-value=0.00068 Score=65.62 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=82.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGE----VDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~----A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+.+.|++++|+..|+...+... .+...+..+-..|.+.|++++ |...|++..+...-+...+..+-..+.+.|
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 345566777777776666654322 345566666677777777775 677777766543224567777777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++++|...|++..+..- -+...+..+-..+.+.|++++|.+.++++-+..+.
T Consensus 299 ~~~eA~~~l~~al~l~P-----~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 299 QNEKAIPLLQQSLATHP-----DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 88888887777766432 23445566777777788888888877776665443
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.04 E-value=5.4e-05 Score=65.10 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~ 163 (229)
..+..+.+.++++.+..+++..... .. .|...|..+-..+-+.|+.++|.+.+++..+.. || ....+.++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAP-DSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4566677888999999988887654 34 677888888888999999999999998876653 54 6788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
.|+.+++.++++...+.. + .|...+..+-.++...|+.++|...+++..+..+.+.
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-P----DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--H----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCChHHHHHHHHHHHHHC-c----CHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 999999888888877654 2 4445677888899999999999999998887666543
No 33
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=6e-05 Score=69.02 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=93.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE---YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVR 159 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~---~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~ 159 (229)
|+-..+..+....+++++..+....+.. .. --..|..++|..|.+.|..++|..++..=...| .||.+|||.||+
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~-~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY-LLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc-ccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 3334455566667788888888777654 11 223455699999999999999999999988899 999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
.+.+.|++..|.++..+|...+.. .+..|+.--+.+|.+.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~----~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEF----DNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhcc----CCchHHHHHHHHHHHh
Confidence 999999999999999998776664 6779998888888877
No 34
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.96 E-value=0.00024 Score=53.32 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCCCCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGS--------KESTVRIYGLMKRSGVGCSWKVD 189 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~--------~~~A~~~f~~M~~~g~~~~~~Pd 189 (229)
-..-|.-+...|++.....+|..++.+| .|++.+||.++.+-++... +-+.+.+|.+|...++. |+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK----P~ 103 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK----PN 103 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC----Cc
Confidence 3445556666688888888888888877 6888888888888777653 33667899999988886 99
Q ss_pred HHHHHHHHHHHHh
Q 026993 190 EYVGKVLSKGLRR 202 (229)
Q Consensus 190 ~~Ty~~Li~~~~~ 202 (229)
..||+++|..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 35
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.93 E-value=0.00019 Score=59.73 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHc----------------CCHHHHHH
Q 026993 115 QDLGLLTDLINTLAKN-----GLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEA----------------GSKESTVR 172 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~-----g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~----------------g~~~~A~~ 172 (229)
.|-.+|..+|+.|.+. |.++-...-+..|.+-| .-|..+||.||+.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4455555566555543 55555666666666666 66666666666655432 24478999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
++++|...|+- ||..|+..|++.|++.+..
T Consensus 125 lL~qME~~gV~----Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVM----PDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCC----CcHHHHHHHHHHhccccHH
Confidence 99999999997 9999999999999988753
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00098 Score=52.00 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|...|+.....-. .+...|..+-..+.+.|++++|...|+...+....|...|..+-.++.+.|+.++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence 344555666666666655543211 2444555555566666666666666666554332244555555556666666666
Q ss_pred HHHHHHHHHH
Q 026993 170 TVRIYGLMKR 179 (229)
Q Consensus 170 A~~~f~~M~~ 179 (229)
|...|..-.+
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 37
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00077 Score=51.07 Aligned_cols=97 Identities=18% Similarity=0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
....+...+.+.|++++|.+.|+...+.+..+...|..+-..|.+.|++++|..+|+...+.+- .+..++-.+-.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~ 93 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-----DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CChHHHHHHHH
Confidence 3444445555566666666666555543322445555555555566666666666655544432 33444444555
Q ss_pred HHHhcCCHHHHHHHHHHhhhcC
Q 026993 199 GLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
.+...|+.++|.+.+++.-+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc
Confidence 5555666666666665554443
No 38
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00056 Score=46.17 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
....+.+.|++++|..+|....+... .+...+..+-..|...|++++|.+.|+........+..+|..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33456778999999999998876443 45567888888999999999999999998766533456888999999999999
Q ss_pred HHHHHHHHHHHH
Q 026993 168 ESTVRIYGLMKR 179 (229)
Q Consensus 168 ~~A~~~f~~M~~ 179 (229)
++|...|.+..+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.82 E-value=0.0012 Score=67.71 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=99.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHH----------
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVV---------- 158 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI---------- 158 (229)
.+.+.|++++|+..|+...+... -|...+..|-..|.+.|++++|...|++..+.. .++...|..++
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 35578999999999998876433 367789999999999999999999999987654 23333343332
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 159 --RAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 159 --~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..+.+.|++++|.+.|++..+..- .|...+..|-..+...|+.++|.+.|++.-+..+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDN-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 356789999999999999987642 45677788899999999999999999988776554
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.80 E-value=0.0024 Score=65.58 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+...|+.++|+.+++ ... .+...+..+-..|.+.|+.++|...|++..+...-|...+..+...|...|+.+
T Consensus 580 a~~l~~~G~~~eA~~~l~----~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLR----QQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHCCCHHHHHHHHH----hCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 344555666666665554 111 233344555555666666666666666655443123455666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+.|+...+.. | +..++..+-..+...|+.++|.++++++...
T Consensus 655 eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 655 AARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 6666666544321 2 2233444455555666666666666655543
No 41
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00023 Score=65.24 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=92.7
Q ss_pred HHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 104 VFSTIQREYQ---QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 104 vf~~m~~~~~---~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
++..|.+.+. ....+....+++......+++++..++....... .--..|..++|+.|.+.|..++|+++...=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5556655421 1466677888888888889999999998876542 122345679999999999999999999999
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 178 KRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 178 ~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..-|+- ||.+|||.|++.|.+.|++..|.+|.-+|+..
T Consensus 130 ~~yGiF----~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 130 LQYGIF----PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hhcccC----CChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999997 99999999999999999999999999998875
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.78 E-value=0.0042 Score=62.79 Aligned_cols=120 Identities=8% Similarity=-0.027 Sum_probs=76.3
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
+.|++++|+..|+...+ .. |+...|..+-..+.+.|+.++|...|.+..+...-+...++.+-..+...|+.++|.++
T Consensus 588 ~~Gr~~eAl~~~~~AL~-l~-P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLN-IA-PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHH-hC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666655543 33 66666777777777777777777777776654322345666666677777777777777
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 174 YGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
|++-.+..- -|...+..+-..+...|+.++|...+++.-+..
T Consensus 666 l~~AL~l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 666 LERAHKGLP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 776665431 244555667777777777777777777665543
No 43
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.0011 Score=48.52 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-Q-QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GG-DGRGLSRVVRAVVE 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~-pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p-d~~tyn~lI~~~~~ 163 (229)
...+.+.|++++|.+.|..+.+... . .....+..+-..+.+.|++++|...|++..... .+ ....+..+-..+.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 3444455555555555555543311 0 011233344455555555555555555544332 11 12344444455555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 026993 164 AGSKESTVRIYGLMKRS 180 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~ 180 (229)
.|+.++|.+.|++..+.
T Consensus 89 ~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKR 105 (119)
T ss_pred hCChHHHHHHHHHHHHH
Confidence 55555555555555544
No 44
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.0016 Score=59.28 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
++++-+...++++.|+.+|+++.+. . |++ +..|...|...++-.+|.++.++..+...-|....+.-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-~-pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-D-PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-C-CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3566666778999999999999763 2 554 44577888888999999999998876543367778888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEY-VGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
.+.|+++.+++.+.. |+.+ +|..|..+|.+.|+++.|.-.++-+=
T Consensus 250 ~~lAL~iAk~av~ls------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999998753 7666 99999999999999999998876443
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.70 E-value=0.0041 Score=54.25 Aligned_cols=119 Identities=13% Similarity=-0.083 Sum_probs=89.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~~~~ 169 (229)
.+.+.|+.++|...|+...+... .+...|+.+=..|.+.|++++|...|+...+.. | +..+|..+-..+...|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 36678999999998888765332 356789999999999999999999999887654 4 46788888888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|.+.|+.-.+.. |+..............++.++|.+.+.+..
T Consensus 151 A~~~~~~al~~~------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 151 AQDDLLAFYQDD------PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999998887653 544322222222345678899999886543
No 46
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.70 E-value=9.3e-05 Score=64.67 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGL---LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t---y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
.+..+.+.++++.|.+.++.|++ .. .|... ..+.|+.+--...+++|..+|++|.++-.++..+.|.+-.++...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~-~~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ-ID-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC-CS-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cC-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 35566677777777777777754 22 34322 233333333334677777777777654345667777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhcCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE-ELANEVEREFCWVPG 221 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~-~~A~~v~~e~~~~~~ 221 (229)
|++++|.+++.+-.+..- -|.-|..-+|-.....|+. +.+.+++.+++...|
T Consensus 215 ~~~~eAe~~L~~al~~~~-----~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDP-----NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp T-HHHHHHHHHHHCCC-C-----CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred CCHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 777777777776544332 1333444455555666666 556677777766533
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.69 E-value=0.0036 Score=63.27 Aligned_cols=130 Identities=11% Similarity=-0.084 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.....+.+.|+.++|...|+...+... .+...+..+-..+-+.|++++|...|++-.+. .|+...|..+-..+.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI-APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCC
Confidence 445567889999999999988865422 23334444444555669999999999998754 4788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.++|.+.|.+..+..- -+...++.+-..+...|+.++|.++++..-+..|..
T Consensus 625 ~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 625 VPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999987642 355677788889999999999999999887776543
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.68 E-value=0.0049 Score=50.78 Aligned_cols=90 Identities=10% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTL-AKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~-~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
..+...|+.+.|...|+...+-.. -|...|..+-.++ ...|+ .++|.+++++..+.+.-|...+..+=..+.+.|+
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence 344455555555555554433211 2334444444432 34444 3555555555554431134455555555555555
Q ss_pred HHHHHHHHHHHHHc
Q 026993 167 KESTVRIYGLMKRS 180 (229)
Q Consensus 167 ~~~A~~~f~~M~~~ 180 (229)
+++|...|+++.+.
T Consensus 160 ~~~Ai~~~~~aL~l 173 (198)
T PRK10370 160 YAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555543
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.67 E-value=0.0021 Score=60.97 Aligned_cols=119 Identities=8% Similarity=-0.191 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
+++++|...++...+ .. | |...|..+=..+...|++++|...|++..+.+.-+...|..+-..|...|+.++|.+.|
T Consensus 318 ~~~~~A~~~~~~Al~-ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATE-LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457888888877655 33 4 56678888788899999999999999987665224567888889999999999999999
Q ss_pred HHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 175 GLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++..+.. |+. ..+..+...+...|+.++|.+.++++.+..++
T Consensus 396 ~~Al~l~------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p 438 (553)
T PRK12370 396 NECLKLD------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ 438 (553)
T ss_pred HHHHhcC------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence 9998764 442 22333444567789999999999988765433
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.62 E-value=0.0043 Score=46.86 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.....+.+.|+.++|...|+....... .+...|..+-..|.+.|++++|...|+.....+..+..+|..+=..|...|+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 344557788999999999988866443 4677888899999999999999999998876653456677777788999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
.++|...|++..+.. |+...+.-+.
T Consensus 101 ~~~A~~~~~~al~~~------p~~~~~~~~~ 125 (135)
T TIGR02552 101 PESALKALDLAIEIC------GENPEYSELK 125 (135)
T ss_pred HHHHHHHHHHHHHhc------cccchHHHHH
Confidence 999999998887753 6666654443
No 51
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.60 E-value=0.0012 Score=57.61 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=87.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH---HHHHHHHHHHHcCCH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR---GLSRVVRAVVEAGSK 167 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~---tyn~lI~~~~~~g~~ 167 (229)
.+...|++++|+++.+.- -+.......|..|.+.+|++.|.+.|..|++.+ .|.. ...+.|+.+.....+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhH
Confidence 345679999999776543 355666788999999999999999999998764 2322 233334433334479
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+|+-+|++|... +. ++..+.+.+.-+....|++++|++++++.-+..+
T Consensus 184 ~~A~y~f~El~~~-~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp CHHHHHHHHHHCC-S------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHHHHHHHHHhc-cC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 9999999998764 55 8889999999999999999999999998765543
No 52
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0013 Score=49.43 Aligned_cols=77 Identities=6% Similarity=0.190 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCC-CCCHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-Y-QQQDLGLLTDLINTLAKNG--------LTGEVDRLIGELEEID-GGDGRGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~-~~pd~~ty~~LI~~~~k~g--------~~~~A~~lf~~M~~~g-~pd~~tyn 155 (229)
.-+..+...+++.....+|+.+++. + . |.+.+||.++.+.++.. ++-+...++++|..++ +|+.-|||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~l-Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITL-PSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667779999999999999877 6 6 99999999999998865 3556788899999999 99999999
Q ss_pred HHHHHHHHc
Q 026993 156 RVVRAVVEA 164 (229)
Q Consensus 156 ~lI~~~~~~ 164 (229)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999998764
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.58 E-value=0.0029 Score=49.32 Aligned_cols=102 Identities=11% Similarity=-0.073 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
|+. +..+-..+.+.|++++|...|+........+...|..+-..+.+.|++++|...|+...+..- .|..++.
T Consensus 24 p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----~~~~a~~ 96 (144)
T PRK15359 24 PET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----SHPEPVY 96 (144)
T ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCcHHHH
Confidence 553 555677889999999999999998876544788999999999999999999999999997653 4778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-+-.++...|+.++|.+.++..-+..+..
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999887776554
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0068 Score=44.20 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEID--GG-DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGK 194 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~ 194 (229)
+|-.+...+.+.|++++|.+.|.++.+.. .+ ....+..+-..+.+.|+++.|.+.|++.....-. .| ....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---SPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---CCcccHHHH
Confidence 46677778899999999999999997653 11 1346777999999999999999999998864211 02 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
.+-..+.+.|+.++|.+.++++.+..|.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 788889999999999999999988766553
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.54 E-value=0.0088 Score=58.97 Aligned_cols=126 Identities=13% Similarity=-0.019 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+-..+.+.|++++|..+|+...+.-. .+...+..+...+.+.|++++|...+++..+....+.. |..+-..+...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 4455667888999999999988765432 34666778888899999999999999998765422344 888888889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+.++|...|++..+..- -+...+..+...+...|..+.|.+.++....
T Consensus 131 ~~~~Al~~l~~al~~~P-----~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 131 RHWDELRAMTQALPRAP-----QTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred CHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 99999999999987642 2444556677788888998889888876554
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.52 E-value=0.016 Score=48.18 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCH-HHHH-
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQDL-GLLTDLINTLAKN--------GLTGEVDRLIGELEEIDGGDG-RGLS- 155 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~-~ty~~LI~~~~k~--------g~~~~A~~lf~~M~~~g~pd~-~tyn- 155 (229)
+-..+.+.|++++|+..|+.+.+... .++. ..+..+-..+.+. |+.++|.+.|+...... |+. ..+.
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a 154 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDA 154 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHH
Confidence 44567789999999999999977532 1222 1333333444443 78999999999987654 332 1221
Q ss_pred ----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 156 ----------------RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 156 ----------------~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+-..|.+.|+.++|...|.+.....-. .| ....+..+...+.+.|+.++|.++++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD---TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445678899999999999998765210 02 346778899999999999999999999887
Q ss_pred cCC
Q 026993 219 VPG 221 (229)
Q Consensus 219 ~~~ 221 (229)
.++
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 664
No 57
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0022 Score=55.72 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
+..++.+.|.+..+.|.++|...++. +. .+++...++|..+ -.++.+.|.++|+...+.-..|..-|..-|+-+.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~-~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCT-YHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35566677777788999999988754 34 6677777776443 24566679999998765434467788888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEY----VGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~----Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.|+.+.|..+|++-... + |... .|...|+-=.+.|+++...+|.+.+.++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISS-L-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-S-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHh-c-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999999999888765 4 4444 8888888889999999999999888887554
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.49 E-value=0.0082 Score=59.15 Aligned_cols=128 Identities=9% Similarity=-0.035 Sum_probs=99.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
+......|+.++|++++......-. .+...+..+-..+.+.|++++|..+|++..+....+...+..+...+...|+.+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 3445678999999988888754222 355568888899999999999999999876553224566778888899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+|...+++..+..- .+.. +..+-..+...|+.++|.+.+++.-+..|..
T Consensus 101 eA~~~l~~~l~~~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 101 EALVKAKQLVSGAP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred HHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999887632 2344 8888888899999999999998888776654
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.46 E-value=0.011 Score=53.77 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g 165 (229)
.+...+.+.|+.+.|.++.....+ .. +|. --.++.+....++.+++.+..+...++. || ...+-++=..+.+.|
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~-~~-~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLK-RQ-YDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC-CCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 457778889999999999877755 23 444 2234555566799999999999988764 44 556888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++++|.+.|+...+. . ||..+|..|-..+.+.|+.++|.+++++--.
T Consensus 343 ~~~~A~~~le~al~~--~----P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 343 EWQEASLAFRAALKQ--R----PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHhc--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999875 3 9999999999999999999999999996533
No 60
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.017 Score=44.71 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=87.1
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCC-CCCH--HHHHHHHHHHHHcCCH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTD---LINTLAKNGLTGEVDRLIGELEEID-GGDG--RGLSRVVRAVVEAGSK 167 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~---LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~--~tyn~lI~~~~~~g~~ 167 (229)
..++...+...++.+.+.+. .+.+..-+ +-..+...|++++|...|+...... .|+. ...-.|-..+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 57888888888999887654 33222222 3367888999999999999998876 4432 3555577888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
++|+..++...... .....+..+-+.+.+.|+.++|++.|+.
T Consensus 102 d~Al~~L~~~~~~~------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA------FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc------hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999997644333 3445677788999999999999999875
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.41 E-value=0.013 Score=57.10 Aligned_cols=127 Identities=14% Similarity=0.030 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g 165 (229)
+-+...+.|..++|..+++...+ +. || ......+...+.+.+++++|....+...... || ....+.+=.++.+.|
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~-~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ-RF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh-hC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 44556678999999999988865 45 65 4567778899999999999999999988764 44 566777777888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
++++|.++|++....+ || .-++..+-..+-+.|+.++|...|+..-....++
T Consensus 169 ~~~~A~~~y~~~~~~~------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 169 QSEQADACFERLSRQH------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred chHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9999999999999843 55 7888889999999999999999999876654443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.39 E-value=0.00026 Score=68.91 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=79.4
Q ss_pred HHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 026993 107 TIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGC 184 (229)
Q Consensus 107 ~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~ 184 (229)
.|+.. +. ||.+||..+|.-||..|+++.|- +|.-|+-+. .-+...|+.++.+...+++.+.|. .
T Consensus 15 ~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e- 80 (1088)
T KOG4318|consen 15 LHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E- 80 (1088)
T ss_pred HHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C-
Confidence 34333 66 99999999999999999999998 999998877 567899999999999999888875 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 185 SWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 185 ~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|-.-||+.|.++|..-|++..-+.+-++|.
T Consensus 81 ---p~aDtyt~Ll~ayr~hGDli~fe~veqdLe 110 (1088)
T KOG4318|consen 81 ---PLADTYTNLLKAYRIHGDLILFEVVEQDLE 110 (1088)
T ss_pred ---CchhHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 888899999999999999887555555443
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.38 E-value=0.0018 Score=63.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
||..+|.++++.-.-+|+++.|..+..+|+++| .-+.+-|..||-| .+...-+..+...|.+.|+. ||..||
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~----p~seT~ 274 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ----PGSETQ 274 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCC----CCcchh
Confidence 899999999999999999999999999999999 6677777777766 88888888899999999997 999999
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 026993 194 KVLSKGLRRFGEEELANE 211 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~ 211 (229)
..-+-.+.++|....+.+
T Consensus 275 adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 275 ADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred HHHHHhhhcchhhhhccc
Confidence 988877777666555443
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00042 Score=48.68 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 131 GLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 131 g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
|++++|..+|+++.+.. .++...|-.+-..|.+.|++++|.++++. .+.+. .+.-..-.+-.+|.+.|+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----CHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----CCHHHHHHHHHHHHHhCCHHH
Confidence 45555555555554433 11222333355555555666666555555 21111 111122233455555566666
Q ss_pred HHHHHHH
Q 026993 209 ANEVERE 215 (229)
Q Consensus 209 A~~v~~e 215 (229)
|.+++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.38 E-value=0.016 Score=48.15 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~ 161 (229)
.....+.+.|+++.|...|+.+.+... .|. ...+..+-..|-+.|++++|...|+++.+.. .|.. .+|..+-..+
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 445567789999999999999876532 121 1356777889999999999999999998764 2332 2444444444
Q ss_pred HHc--------CCHHHHHHHHHHHHHcCCCCCCCCCHH-HHH-----------------HHHHHHHhcCCHHHHHHHHHH
Q 026993 162 VEA--------GSKESTVRIYGLMKRSGVGCSWKVDEY-VGK-----------------VLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 162 ~~~--------g~~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty~-----------------~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+. |+.++|.+.|++..+.. |+.. .+. .+-..+.+.|+.++|...+++
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRY------PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHC------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 443 78899999999998753 4432 221 344567788999999999999
Q ss_pred hhhcCCC
Q 026993 216 FCWVPGG 222 (229)
Q Consensus 216 ~~~~~~~ 222 (229)
..+..+.
T Consensus 192 al~~~p~ 198 (235)
T TIGR03302 192 VVENYPD 198 (235)
T ss_pred HHHHCCC
Confidence 8776554
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.38 E-value=0.0081 Score=56.38 Aligned_cols=128 Identities=21% Similarity=0.178 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC--CC-
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE----YQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEI-----DG--GD- 150 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~----~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~-----g~--pd- 150 (229)
.+...++..+++++|..++..-.+. .+ +|. -+|+.|=..|-+.|+++||+++|.+...+ |+ +.
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPG-EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 3455577789999999998876544 33 332 57999999999999999999999875432 11 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGL----MKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~----M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
...+|-|=..|.+.++.++|.++|.+ |+..|.. .||+ +||.-|...|-+.|++|.|.++.+..-+
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~---~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD---HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 36788888899999999999999976 5555543 3654 7899999999999999999999875543
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.011 Score=53.13 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|+++.|+..|.+..+... -+...|..+-.+|.+.|++++|...+++..+....+...|..+-.+|.+.|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3456788999999999999876533 466788888899999999999999999987765335678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+|.+.|++..+.. |+......++.-|
T Consensus 88 eA~~~~~~al~l~------P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLA------PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 9999999998754 6655555555443
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.33 E-value=0.0017 Score=43.27 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVV 158 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI 158 (229)
.+.|++++|+++|+.+.+... -|...+-.+..+|.+.|++++|..+++.+... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCHHHHHHHH
Confidence 355666777777766655433 35555666666777777777777777666544 24544444443
No 69
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.0084 Score=56.84 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-CCchHHhhhh-----------------hhhc------HHHHHHHHHhcCCHHHHHHHH
Q 026993 50 LSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL-----------------IKHD------LLAALRELIRQGECAVAVHVF 105 (229)
Q Consensus 50 l~~ea~~~~~~l~~~~~~~~~-~~~~~~~~~l-----------------~~~d------~~~vl~~l~~~g~~~~A~~vf 105 (229)
+-+|=.++|..++|+...+|. ...++.+..- ++.| |..+=..+.|+++.+.|.-.|
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 556777899999999888886 3333322211 1111 223334467899999999888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 026993 106 STIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCS 185 (229)
Q Consensus 106 ~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~ 185 (229)
+...+ +-..|.+.-..+-..+-+.|+.|+|..+|++-..-..-|..+-=-.+.-+...++.++|+..+++.++.-
T Consensus 513 qkA~~-INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v---- 587 (638)
T KOG1126|consen 513 QKAVE-INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV---- 587 (638)
T ss_pred Hhhhc-CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC----
Confidence 66654 3313677777777889999999999999998765541233333334556678899999999999999753
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCC
Q 026993 186 WKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV-PGGSL 224 (229)
Q Consensus 186 ~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~-~~~~~ 224 (229)
| +..+|-.|-+.|-+.|+.+.|..-|-.+.+. +++.-
T Consensus 588 --P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 588 --PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred --cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5 4577888999999999999999999988886 55443
No 70
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0042 Score=53.27 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=91.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH----Hc
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV----EA 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~----~~ 164 (229)
...++..|++++|++..+.. -+.-.+..=+..+.|..+++-|.+....|.+-. +..|.|-|-.++. ..
T Consensus 115 a~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccc
Confidence 44577889999999877663 334444455566778889999999999998753 4556665544444 45
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+...+|+-+|++|-++- . |+.-|-+-+..++...|++++|+.++++.-..-+..
T Consensus 187 ek~qdAfyifeE~s~k~-~----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKT-P----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred hhhhhHHHHHHHHhccc-C----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 57899999999998643 3 899999999999999999999999999876654333
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.25 E-value=0.013 Score=58.20 Aligned_cols=128 Identities=12% Similarity=-0.087 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH-HHHH--HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGL-LTDL--INTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t-y~~L--I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
.++..+...|+.++|+..++.... |+... +..+ ...|...|++++|.++|+++.+...-|...+..++..|..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 445666677888888888777652 43222 3333 3466677889999999988877651134555677888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
.|+.++|++.+++.... . |+...|-.++..+...++..+|.+.++++-+..|...
T Consensus 149 ~~q~~eAl~~l~~l~~~--d----p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 149 AGRGGVVLKQATELAER--D----PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred cCCHHHHHHHHHHhccc--C----cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 88889998888888764 2 7777775555555445666568888888877766543
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.22 E-value=0.022 Score=51.91 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGL---LTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t---y~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~ 161 (229)
.....+.+.|+.+.|.++.+...+.. ||... .....-.....++.+.+.+.++.-.+.. .|+....-++=..|
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 44567888999999999998887653 33221 1222223334577888888888766543 33324556788889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
.+.|++++|.+.|+.-...... ||..++..+-..+.+.|+.++|.+++++-
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~----p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQ----LDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999953332334 99999999999999999999999999975
No 73
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.022 Score=48.55 Aligned_cols=121 Identities=18% Similarity=0.101 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
..+...+.|++.+|...|.+....-. +|-..||.+=-+|-+.|++++|+.-|.+-.+--.-+...+|.|--.|.-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 45667788999999999988765334 78889999999999999999999998876554311345677777778888999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
++|..++..-...+- -|..+-.-|--.....|++++|+.+..
T Consensus 185 ~~A~~lll~a~l~~~-----ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 185 EDAETLLLPAYLSPA-----ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhCCC-----CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999998888775 477777778888889999999988764
No 74
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.21 E-value=0.0042 Score=51.84 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=66.0
Q ss_pred HhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHhhhCC-CCCHHHH
Q 026993 93 IRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNG----------------LTGEVDRLIGELEEID-GGDGRGL 154 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g----------------~~~~A~~lf~~M~~~g-~pd~~ty 154 (229)
.|.|+.+-.......|.+- .. .|+.+|+.||+.+=|.. +-+=|.+|+++|+..| .||..|+
T Consensus 63 ~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~ 141 (228)
T PF06239_consen 63 RRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETE 141 (228)
T ss_pred CCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3567888777777778654 45 89999999999877643 3566899999999999 9999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHH
Q 026993 155 SRVVRAVVEAGSK-ESTVRIYGLMKR 179 (229)
Q Consensus 155 n~lI~~~~~~g~~-~~A~~~f~~M~~ 179 (229)
..|++.|.+.+.. .+..++.--|.+
T Consensus 142 ~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 142 QMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999999988843 344444444433
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.21 E-value=0.029 Score=48.89 Aligned_cols=121 Identities=12% Similarity=-0.004 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHHH--cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 95 QGECAVAVHVFSTIQRE--YQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~--~~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.++.+.++.-+..+... .. |+ ...|..+=..|.+.|+.++|...|++..+...-+...|+.+=..|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35566677777776643 23 32 345666667889999999999999998766433578999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+.|+...+.. | +..+|.-+-..+...|+.++|.+.++..-+..|.
T Consensus 118 ~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 118 YEAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999998754 4 4677788888889999999999999987776544
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.19 E-value=0.014 Score=48.07 Aligned_cols=125 Identities=9% Similarity=-0.052 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcCC--HHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAGS--KESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g~--~~~A~ 171 (229)
.++.++++..+....+.-. .|...|..|-..|...|++++|...|+.-.+...-|...|..+-.+ |...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4555666666655544333 4777899999999999999999999998876552256677777766 467787 59999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
+++++-.+..- -|..++..+-..+.+.|++++|...++.+-+..+++.+
T Consensus 131 ~~l~~al~~dP-----~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDA-----NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999998764 36678888889999999999999999998887666543
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.19 E-value=0.019 Score=52.31 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=79.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH----HHHHHHHHcCC
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS----RVVRAVVEAGS 166 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn----~lI~~~~~~g~ 166 (229)
.+...|+++.|+..++.+.+... -|...+..+...|.+.|+.++|.+++..+.+.+.++...+. ..-.++...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777766433 34556777777777777777777777777766522222221 11112233333
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+++.+.+..+.+.--. ....|...+..+...+...|+.++|.+++++.-+..+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HhcCHHHHHHHHHHCCH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 34444455555443210 000166777888889999999999999999887765443
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.17 E-value=0.0025 Score=44.69 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
+|+++.|+.+|+.+.+... .+|...+-.+-.+|.+.|++++|..+++.. +.+..+....-.+-.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6889999999999977622 134444555889999999999999999882 22211223333446678899999999999
Q ss_pred HHH
Q 026993 174 YGL 176 (229)
Q Consensus 174 f~~ 176 (229)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 79
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.17 E-value=0.026 Score=51.29 Aligned_cols=118 Identities=8% Similarity=0.015 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDL-INTLAKNGLTGEVDRLIGELEEIDGGDGRGLS--RVVRAVVEAGSKESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~L-I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn--~lI~~~~~~g~~~~A~ 171 (229)
.|+++.|.+....-.+ .. ++...|-.+ -..-.+.|+++.|.+.|.++.+.. ||...+- ..-.-+...|+.++|.
T Consensus 97 eGd~~~A~k~l~~~~~-~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD-HA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA-DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 6899998876655432 22 223344333 334488999999999999987653 4443222 3356788999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+.++++.+..- -+...+..+...+.+.|++++|.+++..+.+..
T Consensus 174 ~~l~~~~~~~P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 174 HGVDKLLEVAP-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 99999987653 356778889999999999999999999888763
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.0037 Score=41.57 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
+.+.|++++|.++|+++.+...-|...+-.+...|.+.|++++|.++++...... ||...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD------PDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG------TTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCHHHHHHHH
Confidence 3567899999999999876542256677789999999999999999998888753 7766665554
No 81
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.03 E-value=0.029 Score=55.74 Aligned_cols=120 Identities=18% Similarity=0.078 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+...|+++.|+++|+.+.+... -|...+..++..|...|+.++|.+.+...... .|+...|-.++..+-..++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHH
Confidence 3456677999999999999977533 34566678889999999999999999998765 466666644444343455666
Q ss_pred HHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 169 STVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
+|++.|++|.+.. | |.-.+.-+...+.+.|-...|.++.++-
T Consensus 187 ~AL~~~ekll~~~------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 187 DALQASSEAVRLA------PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 6999999999874 5 5666688999999999888888776653
No 82
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.00 E-value=0.018 Score=51.74 Aligned_cols=93 Identities=9% Similarity=-0.075 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
..+.+.|++++|.++|++..+...-+...|..+-.+|.+.|++++|+..+++..+..- .+...|..+-..|...|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-----SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHhC
Confidence 3566789999999999998876533577888889999999999999999999987642 36678888889999999
Q ss_pred CHHHHHHHHHHhhhcCCC
Q 026993 205 EEELANEVEREFCWVPGG 222 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~ 222 (229)
++++|.+.|++..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999988877554
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.00 E-value=0.044 Score=50.54 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~ 169 (229)
...+.|+.+.|++.++.+.+... -|.+........+.+.++.++|.+.|+.+... .|+ ...+=.+=.+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHH
Confidence 34567899999999999876554 46677777788999999999999999998865 466 5667777889999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|..+.++-....- -|...|..|-.+|...|+..+|..-..|.-
T Consensus 393 ai~~L~~~~~~~p-----~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDP-----EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCC-----CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999998877653 478899999999999998888776665543
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.91 E-value=0.035 Score=48.78 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVL 196 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~L 196 (229)
....+-..+...|++++|.+.+++..+....+...+..+-..|...|++++|.+.+.+.....-. .|+. ..|-.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---SSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---CcchhHHHHHHH
Confidence 34455567788899999999999887765334667788888889999999999998887654211 0343 345567
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 026993 197 SKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-..+...|+.++|..++++....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc
Confidence 78888999999999999887543
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.86 E-value=0.056 Score=47.52 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=86.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCC-CCCH-HHHHHHHHHHHHcCC
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTD---LINTLAKNGLTGEVDRLIGELEEID-GGDG-RGLSRVVRAVVEAGS 166 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~---LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~-~tyn~lI~~~~~~g~ 166 (229)
+...|+.+.|.++++...+... .|...++. .....-..|..+.+.+.+.. ... .|+. ..+..+-..+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYP-RDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 4568999999999988866543 34445542 22222234566666666655 222 4443 445556677889999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+++|.+.|++..+..- .|...+..+-..+...|++++|...+++..+..+
T Consensus 130 ~~~A~~~~~~al~~~p-----~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 130 YDRAEEAARRALELNP-----DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 9999999999988653 4567888899999999999999999998776543
No 86
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.86 E-value=0.048 Score=43.43 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
...|..+-..|.+.|++++|...|++....+ .++ ...|..+-..|.+.|++++|.+.|.+..+..- -+...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-----KQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHH
Confidence 4456667777788888888888888876554 322 35778888888888888888888888776431 244455
Q ss_pred HHHHHHHHhcCC--------------HHHHHHHHHHhhhcCC
Q 026993 194 KVLSKGLRRFGE--------------EELANEVEREFCWVPG 221 (229)
Q Consensus 194 ~~Li~~~~~~g~--------------~~~A~~v~~e~~~~~~ 221 (229)
..+...+...|+ +++|.+++++..+..+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 556666666665 3555666655554433
No 87
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.82 E-value=0.19 Score=45.43 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCC
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV-PGGSL 224 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~-~~~~~ 224 (229)
.-.|.+|=.-|.+.+.+.+|.+.|+.-.+. . |+..+|+.+-++|.+.|+.++|.++.+|-... ..++.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~----~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--R----PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 367778888899999999999999965544 3 99999999999999999999999999986643 44433
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.073 Score=45.44 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=95.2
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.-.|+-+.+..+.......+. -|...-+..+....+.|++.+|...|.+......+|..+||-+=-+|-+.|+++.|..
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred HhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH
Confidence 344666666655544433344 5666777789999999999999999999886547789999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-|.+-.+.-. -+...+|-|--.+.-.|+.+.|+.++.+...-++
T Consensus 156 ay~qAl~L~~-----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 156 AYRQALELAP-----NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHhcc-----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9988877543 2345566677777778999999999988766544
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.79 E-value=0.07 Score=45.04 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
||.+|++++|.+.|+.-... |. .-..+|..+--+-.|.|+++.|...|..-.+...-...+.-.|-.-..+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~-~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYG-EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCC-CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 56666666666666665544 32 1223455555555566666666666665544331123445556666666666666
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
|...++.-...|. +...+.-..|+---+.|+.+.|.+.-..+++-+|.+.+
T Consensus 192 Ar~~~~~~~~~~~-----~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 192 ARLYLERYQQRGG-----AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhccc-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6666666655543 56666666666666677777777777777776666654
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.045 Score=48.35 Aligned_cols=120 Identities=20% Similarity=0.144 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH------HHHHHHHHHHHHcCCHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG------RGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~------~tyn~lI~~~~~~g~~~ 168 (229)
.++.+.|.++|-+|.+.-. -..-+--+|=+-|-+.|.+|.|.++...+.++ ||. ..--.|=.-|-.+|.+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4567777777777765211 11223334556677777777777777776654 442 23334555667777777
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.|.++|....+.|. --.-.---|+.-|-...+|+.|.++-+++.+..+.
T Consensus 125 RAE~~f~~L~de~e-----fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 125 RAEDIFNQLVDEGE-----FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHHHhcchh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 77777777766554 23344556777777777777777777766665443
No 91
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.65 E-value=0.041 Score=42.16 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh--------------hhC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGEL--------------EEI-D-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M--------------~~~-g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
|..++.++|-++++.|+++....+.+.. ... . .||..+-.+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4457788888888888888887777542 111 2 68899999999999999999999999987754
Q ss_pred -cCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 180 -SGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 180 -~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-++. -+..+|..|++-.-..-+
T Consensus 81 ~Y~I~----i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIP----IPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCC----CCHHHHHHHHHHHHHhcC
Confidence 4665 568888888887765554
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.49 E-value=0.1 Score=49.04 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH----cCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHhhh-----CC--CCCH-
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE----YQQQDLGLLTDLI----NTLAKNGLTGEVDRLIGELEE-----ID--GGDG- 151 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~----~~~pd~~ty~~LI----~~~~k~g~~~~A~~lf~~M~~-----~g--~pd~- 151 (229)
+-..|..+|+++.|..+|.+-.+. .. .+.-...+++ ..|...+++++|..+|+++.. .| .|.+
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 445677899999999999886543 22 2333333333 478889999999999998753 24 3333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEYVG-KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~Ty-~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+++.|=..|++.|++++|...+++-.+ .|.. .|++-+. +-+..-|+..+++|+|..+++...++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~---~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS---HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5788888899999999988877765321 2332 2555544 66778889999999999999866554
No 93
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.48 E-value=0.15 Score=48.79 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=77.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~ 166 (229)
+-.+|...|++.+|.+-+..-..-+. .-.-.-|.|=+.|...|++++|.++|..-.+- .|+ .-.+|.|-.-|-+.|+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhccc
Confidence 34455666888888877766544222 22345667777888888888888888765543 233 3467777777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
+++|+..|++-.+- . |+- -.|+-+-+.|-..|+++.|.+.+...
T Consensus 404 l~~Ai~~YkealrI--~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 404 LDDAIMCYKEALRI--K----PTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHHHHHhc--C----chHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 88888888776642 2 442 35566666666666666666655443
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.48 E-value=0.2 Score=42.35 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=70.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-++.++|+...|.+-++...+ .. |+ .-+|..+-..|-+.|..+.|.+-|..-.+...-|....|.-=.-+|..|+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~-~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALE-HD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence 346667777777766655543 22 33 3456666677777777777777776544332113344555555567777777
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|...|++-...-.-. +| .-||.-+.-+..+.|+.+.|++.|+.--++
T Consensus 121 eA~q~F~~Al~~P~Y~--~~-s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 121 EAMQQFERALADPAYG--EP-SDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHHHHHHHHHhCCCCC--Cc-chhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7777776665532110 01 234444444445667777777777654444
No 95
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.47 E-value=0.3 Score=38.77 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=76.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE-YQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~-~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
-..+.+.|++++|+..|++..+. -..++ ...|..+-..|.+.|++++|...+.+..+...-+...|..+-..|...|+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 34467789999999999988654 22122 46788889999999999999999998876542245677777777777776
Q ss_pred --------------HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 167 --------------KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 167 --------------~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
+++|.+++.+..+.+ |+. |-.++.-+.-.|+
T Consensus 122 ~~~a~~~~~~A~~~~~~A~~~~~~a~~~~------p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 122 KAEEAGDQDEAEALFDKAAEYWKQAIRLA------PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred hHhHhhCHHHHHHHHHHHHHHHHHHHhhC------chh--HHHHHHHHHhcCc
Confidence 466777776666533 554 5555555555444
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.44 E-value=0.2 Score=49.07 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=86.0
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC
Q 026993 111 EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD 189 (229)
Q Consensus 111 ~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd 189 (229)
.|. .+.-.|--|-....+.|+.+||..+++...+. .|| .-.+-.+...+.+.+++|+|+..+++-.... ||
T Consensus 81 ~~~-~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~ 152 (694)
T PRK15179 81 RYP-HTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SS 152 (694)
T ss_pred hcc-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CC
Confidence 365 67888999999999999999999999998765 466 5688889999999999999999999998764 65
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 190 EY-VGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 190 ~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.. ....+-..+.+.|+.++|..+|+++-.
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 54 457778889999999999999999886
No 97
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.036 Score=42.76 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCCCCCHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMK-----RSGVGCSWKVDEYVG 193 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~-----~~g~~~~~~Pd~~Ty 193 (229)
....++..+...|+.++|.++...+.....-|...|-.+|.+|.+.|+...|.++|..+. +.|+. |+..|-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~----Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE----PSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--------HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC----cCHHHH
Confidence 455667778889999999999988877654578899999999999999999999998774 35886 877664
Q ss_pred H
Q 026993 194 K 194 (229)
Q Consensus 194 ~ 194 (229)
.
T Consensus 140 ~ 140 (146)
T PF03704_consen 140 A 140 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.38 E-value=0.17 Score=40.01 Aligned_cols=93 Identities=10% Similarity=-0.091 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG--DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p--d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
...|..+...+-..|++++|...|.+..... .| ...+|..+=..|.+.|++++|.+.|+...+..- ....++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-----~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-----FLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHH
Confidence 3456677777778899999999998876443 22 235788888888899999999999988776432 234555
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHH
Q 026993 194 KVLSKGLR-------RFGEEELANEVER 214 (229)
Q Consensus 194 ~~Li~~~~-------~~g~~~~A~~v~~ 214 (229)
..+...+. +.|++++|...++
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 66666666 7777775554444
No 99
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.12 Score=44.55 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYV 192 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~T 192 (229)
...|..-+.-+.+.|++++|...|+...+.- |+. -.+--+-..|...|++++|...|..+.+.--..++.||..-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4567777777788899999999999988653 432 35556777889999999999999999864211111133322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 193 GKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 193 y~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-+...+...|+.+.|.++++++-+..|.+
T Consensus 222 --klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 --KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 24555678999999999999888766554
No 100
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.29 E-value=0.65 Score=44.66 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=96.0
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.+|.++.|+..+++-.+ .. |+ ...||.|-+++-..|++.||+..++.-..-. |+ ..+.|.|=+.|...|.+++|.
T Consensus 298 eqG~ldlAI~~Ykral~-~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALE-LQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHh-cC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHH
Confidence 57899999998877654 23 44 4579999999999999999999998865443 43 467888999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 172 RIYGLMKRSGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|..-.+-- |+ ...+|-|-.-|-..|++++|..-++|.-++-|
T Consensus 375 ~ly~~al~v~------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 375 RLYLKALEVF------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHhhC------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 9998876532 43 35678888899999999999999999888744
No 101
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.081 Score=47.03 Aligned_cols=101 Identities=7% Similarity=-0.056 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH-HHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG-KVLSKG 199 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty-~~Li~~ 199 (229)
+-|=.+|.+.|.+.+|++-|..-.+. .|-+.||--|-..|-+-.+.+.|+.+|++-.++ .|-.+|| .-+-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHH
Confidence 45667899999999999999875543 466778888999999999999999999887764 2888888 446677
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCCCC
Q 026993 200 LRRFGEEELANEVEREFCWVPGGSLENLS 228 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~~~~~~~~~~~ 228 (229)
+...++.++|.+++++.-+..+...|-|+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 88899999999999999998888877765
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.029 Score=55.54 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
++.+.|+++|..+.+... -|.+.-|-+=-.++.+|++++|..+|.+..+...-+..+|-.|=+.|.-.|++..|+++|+
T Consensus 626 k~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 467789999988876544 5888888888889999999999999999988652244578889999999999999999998
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.-.++-.. +-+..+...|-+++-+.|.+.+|.+.+.-....
T Consensus 705 ~~lkkf~~---~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 705 NCLKKFYK---KNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHhcc---cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 65443223 267778888999999999999998887655554
No 103
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.27 Score=43.61 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=85.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQ---DL-GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVV-RAVV 162 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~p---d~-~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI-~~~~ 162 (229)
++..|....+|+.|+++=..+.+--+++ .+ ..|.-|-..+--..+++.|..++.+-.+.+ |+-+=-|+++ +-+.
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~ 225 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHH
Confidence 4555666777888877766665421101 11 123334444445677888888887765543 2322222322 3466
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..|+++.|++.++...+.... --..+-..|..+|...|+.+++...+.++.+..++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPE----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hccchHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 889999999999888876532 23356788999999999999999999988887554
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.13 E-value=0.043 Score=36.11 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
.+.+.|++++|.+.|++..+.. | +...|..+=..+.+.|++++|.+.|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666666666665543 3 344555566666666666666666666654
No 105
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.1 Score=49.80 Aligned_cols=103 Identities=12% Similarity=-0.023 Sum_probs=73.3
Q ss_pred CCHHHHHHHH---HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 115 QDLGLLTDLI---NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 115 pd~~ty~~LI---~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
.|..-||+.= ..|.|.++++.|+-.|..-.+-+.-|.+.-..+-..+-+.|+.|+|+++|++-....-. |..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-----n~l 558 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-----NPL 558 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-----Cch
Confidence 4555555543 35778888999988888776655336677777777888899999999999887655432 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+-=--...+-..++.++|.+.++|+++..|.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 3222455566778999999999999988654
No 106
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.92 E-value=0.47 Score=36.40 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=75.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ---QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~---~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
....|+...+...+......+. -++... ...+.....-+.++- ..+...++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHH
Confidence 3456777788877777765422 022211 344555555555553 246778899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.++...+....- -|...|..+|.+|...|+..+|.++|+.+.+.
T Consensus 80 ~a~~~~~~~l~~dP-----~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 80 EALRLLQRALALDP-----YDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHST-----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999987653 58999999999999999999999999987663
No 107
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.2 Score=49.84 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=90.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCC-CCCHHHHHHHHHHHHHcCCHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEID-GGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M-~~~g-~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
|+..|++++|+.||..+++... -+.-+|-.|=++|..+|++..|.++|+.. .+.+ .-+....+.|=.++.++|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 5678999999999999987622 12335778899999999999999999974 4444 5577888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHhhhcCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL------------------RRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~------------------~~~g~~~~A~~v~~e~~~~~~ 221 (229)
|.+....-...-.. =..+-||..+-.. ...+..++|.++|.++-....
T Consensus 735 ak~~ll~a~~~~p~----~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 735 AKEALLKARHLAPS----NTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHhCCc----cchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99987655443322 1234455433222 334467778888888877643
No 108
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.42 Score=44.28 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=90.2
Q ss_pred hcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHH-------------------------------HHHHhcCCHHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE--YQQQDLGLLTDLI-------------------------------NTLAKNGLTGEVDRLI 140 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI-------------------------------~~~~k~g~~~~A~~lf 140 (229)
.+.+++.|+.+|+++++. |+--|.-+|..++ +-|+-.++-++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 456899999999999887 5523677887776 3467777889999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------CCCCCCCC
Q 026993 141 GELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS--------------------------------GVGCSWKV 188 (229)
Q Consensus 141 ~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~--------------------------------g~~~~~~P 188 (229)
..-.+-+.-....|+-|=+-|..-.+...|++-|+.-++- -| +|
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----kP 429 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL----KP 429 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----CC
Confidence 8766544223567777777788777777777777665431 13 36
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 189 -DEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 189 -d~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|...|.+|-+.|.+.++.++|.+-|+..
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7899999999999999999999988754
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.75 E-value=0.6 Score=36.77 Aligned_cols=87 Identities=15% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH----
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQ--DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV---- 162 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~p--d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~---- 162 (229)
...+...|++++|+..|.........+ ...+|..+=..|.+.|+.++|...++...........+++.+-..|.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 344567899999999998886542102 23578888889999999999999999877543223456777777777
Q ss_pred ---HcCCHHHHHHHHH
Q 026993 163 ---EAGSKESTVRIYG 175 (229)
Q Consensus 163 ---~~g~~~~A~~~f~ 175 (229)
..|+++.|...|+
T Consensus 122 ~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 122 QAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHcccHHHHHHHHH
Confidence 7778775555554
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.75 E-value=0.32 Score=44.46 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~ 167 (229)
.+.+...++-.+|+++.++..++.. -|....+.-...|.+.++.+.|.++..+..+. .|+. .+|..|..+|.+.|++
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCH
Confidence 4444456677788888877765544 46666777778899999999999999998765 4665 5999999999999999
Q ss_pred HHHHHHHHHHH
Q 026993 168 ESTVRIYGLMK 178 (229)
Q Consensus 168 ~~A~~~f~~M~ 178 (229)
+.|+-..+.|.
T Consensus 285 e~ALlaLNs~P 295 (395)
T PF09295_consen 285 ENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCc
Confidence 99999888765
No 111
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.74 E-value=0.05 Score=35.75 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-..+.+.|++++|.+.|++..+..- =+.-.+-.+-..+...|++++|..+|+++-+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-----DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3568899999999999999998652 25667788889999999999999999998765543
No 112
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.65 E-value=0.34 Score=42.01 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHcCC
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVVEAGS 166 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~~~g~ 166 (229)
++.-.++.+.|.+||+...+.+. .|...|..=|+.+.+.|+.+.|+.||+..... .|.. ..|...|.-=.+.|+
T Consensus 45 E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 45 EYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCC
Confidence 45556788889999999988887 78888999999999999999999999997654 3444 499999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
++.+..+.++|.+. + |+.-+...+++
T Consensus 123 l~~v~~v~~R~~~~-~-----~~~~~~~~f~~ 148 (280)
T PF05843_consen 123 LESVRKVEKRAEEL-F-----PEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHHH-T-----TTS-HHHHHHC
T ss_pred HHHHHHHHHHHHHH-h-----hhhhHHHHHHH
Confidence 99999999999874 2 55444444444
No 113
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.64 E-value=0.35 Score=47.78 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~ 163 (229)
..+.++|.+.|++.+|+.+|..+... .. -+.+.|--+=.+|-..|..++|.+.++...... || ...=-+|=.-|-+
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHh
Confidence 35778899999999999999999876 33 467888899999999999999999999887653 33 2333345556789
Q ss_pred cCCHHHHHHHHHHHHHcC----CCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 164 AGSKESTVRIYGLMKRSG----VGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g----~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
.|+.|+|.++...|..-+ -.|.|+|+...---..+-+...|+.|+
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999976332 114567887766667777888888777
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.61 E-value=0.9 Score=42.17 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
..+.+.+.++..+|.+-|+.+... . |+ ....-.+=.+|.+.|+..+|.++++.-..+..-|...|..|=.+|...|+
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l-~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL-D-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc-C-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 345567899999999999888653 3 55 45566677899999999999999999876654467899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 026993 167 KESTVRIYGLMKR 179 (229)
Q Consensus 167 ~~~A~~~f~~M~~ 179 (229)
..+|..-+.|+..
T Consensus 424 ~~~a~~A~AE~~~ 436 (484)
T COG4783 424 RAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHHH
Confidence 9999888877653
No 115
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.6 Score=43.31 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=75.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV-EAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~-~~g~~~~A 170 (229)
+-+.|+-.+|.+-+-.--+-+. -|+.|--=|-.-|....-.++|...|+.-.-- .|+++-|-.||..|. +.|++.+|
T Consensus 602 ydqegdksqafq~~ydsyryfp-~nie~iewl~ayyidtqf~ekai~y~ekaali-qp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYIDTQFSEKAINYFEKAALI-QPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHhcccHHHH
Confidence 3467888887766533222122 35555444444455555567788888864221 699999999998876 57899999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
+++|+...++ ++ -|+-...-|++-+...|.-
T Consensus 680 ~d~yk~~hrk-fp----edldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 680 FDLYKDIHRK-FP----EDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHh-Cc----cchHHHHHHHHHhccccch
Confidence 9999999864 44 5788888899998888854
No 116
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=0.53 Score=43.87 Aligned_cols=122 Identities=13% Similarity=0.026 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.+...+..|..+|+.-..... .--..|-.-|.+=-..|.+..|.++|+.-.+- .||...|++.|+-=.+....+.|..
T Consensus 118 mknk~vNhARNv~dRAvt~lP-RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w-~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILP-RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW-EPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 355566677777776654321 11234555566666678888888888874422 6999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|++.+- |+ |++.+|---.+-=.+.|.+..|+.|+....++.+.
T Consensus 196 IYerfV~--~H----P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 196 IYERFVL--VH----PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHhe--ec----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998874 44 99999877777778888888898888876665544
No 117
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.56 E-value=0.1 Score=39.89 Aligned_cols=74 Identities=12% Similarity=-0.015 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cC------CC--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKR---SG------VG--CSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~---~g------~~--~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|..++.++|-++++.|+++....+.+..=. .| +. .+..|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999888865411 11 11 12259999999999999999999999999999888
Q ss_pred cCCCC
Q 026993 219 VPGGS 223 (229)
Q Consensus 219 ~~~~~ 223 (229)
..+-.
T Consensus 81 ~Y~I~ 85 (126)
T PF12921_consen 81 KYPIP 85 (126)
T ss_pred HcCCC
Confidence 65533
No 118
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.50 E-value=0.19 Score=43.87 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
+-+.|+.++++|.-.|+. ||..+--+||++|++-|..
T Consensus 138 QQ~C~I~vLeqME~hGVm----PdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVM----PDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhHHHHHHHHHHHcCCC----CchHHHHHHHHHhcccccc
Confidence 346789999999999997 9999999999999988864
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.48 E-value=0.25 Score=38.14 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDL--GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~--~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
.+-..+...|++++|...|+++.....+++. ...-.|-..+...|++++|...++..... ......+...=+.|.+.
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHC
Confidence 3456677899999999999999765321322 23334667888999999999999775432 23345666677789999
Q ss_pred CCHHHHHHHHHH
Q 026993 165 GSKESTVRIYGL 176 (229)
Q Consensus 165 g~~~~A~~~f~~ 176 (229)
|+.++|...|..
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999975
No 120
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.48 E-value=0.073 Score=36.29 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEE----ID--GGD-GRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
+|+.+=..|.+.|++++|...|++..+ -| .|+ ..+|+.|=..|...|++++|.+.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555566666666655554331 12 122 34555555555555555555555544
No 121
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.22 Score=44.32 Aligned_cols=122 Identities=7% Similarity=-0.084 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLT-DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~-~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-+.|.+..++..|+.+|.+-...+ |--+||- -+-..+-..++.++|.+++.+..+...-|+-....+-.+|.-.++.
T Consensus 263 skvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh
Confidence 345566666777777666654433 3333332 2333444556777777777766554333555666677777888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|-|++.|.++...|+. +-.-|+-+-=+|.-.+++|.+.--|+...
T Consensus 341 E~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 8888888888888874 44555555555556677777666555443
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.45 E-value=0.49 Score=48.99 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQRE--YQ--QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVR 159 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~--~~--~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~ 159 (229)
|+..+.-....++.+.|.+++++.... ++ +--.-+|.++++..---|.-+...++|++..+. .| ...|..|..
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 345566666677777888877776543 21 011234666666666666666667777777654 34 346777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 160 AVVEAGSKESTVRIYGLMKRS-GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~-g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-|-+.+..++|-++|+.|.++ | -..-+|...++.+.+..+.+.|+.++.+..+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 888888888888888888653 3 13356777777777777777777777766554
No 123
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.44 E-value=0.29 Score=43.45 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
...+..|...|+...|.++ +++++-||-.-|-..|.+|++.|++++-+++..+ . -..+.|-.+|..|.+.|
T Consensus 181 ~~Ti~~li~~~~~k~A~kl----~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKL----KKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHHHH----HHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-CCCCChHHHHHHHHHCC
Confidence 3567777888888777654 4444338999999999999999999988776433 1 14588999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
+.++|...... + || .--+..|.+.|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k-----~-----~~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPK-----I-----PD----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHh-----C-----Ch----HHHHHHHHHCCCHHHHHHHH
Confidence 99999887665 4 33 45677888999999986653
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.41 E-value=0.071 Score=36.34 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+|+.+=..|...|++++|++.|++..+. |-. .|+ ..+|.-|-..+...|+.++|.+++++.-+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD---HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 58899999999999999999999987642 322 244 67889999999999999999999987654
No 125
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.23 E-value=0.65 Score=40.03 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=66.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHc
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQD---LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----GRGLSRVVRAVVEA 164 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd---~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----~~tyn~lI~~~~~~ 164 (229)
+.+.|++++|+..|+.+.+.+. -+ ...+--+-..|...|++++|...|..+.+.- |+ ...+=-+...|...
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHHHHHHHHc
Confidence 3567999999999999987643 12 1345566678899999999999999997643 22 23444456667789
Q ss_pred CCHHHHHHHHHHHHHc
Q 026993 165 GSKESTVRIYGLMKRS 180 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~ 180 (229)
|+.++|.++|++..+.
T Consensus 231 g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 231 GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998875
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.08 E-value=0.99 Score=42.72 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHhhhC-C-CCCHHHHHHHHHHHHHcCC
Q 026993 98 CAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKN--------GLTGEVDRLIGELEEI-D-GGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~--------g~~~~A~~lf~~M~~~-g-~pd~~tyn~lI~~~~~~g~ 166 (229)
...|..+|++..+ .. || ...|..+-.+|... .++..|.+........ . ..+...|.++--.+...|+
T Consensus 358 ~~~A~~lle~Ai~-ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILK-SE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 5578888877755 33 55 34455443333221 1233444444433222 1 2344678777555667899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|...|++..+.. |+...|..+-+.+...|+.++|.+.+++..+..|.
T Consensus 436 ~~~A~~~l~rAl~L~------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 436 TDEAYQAINKAIDLE------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999998754 88899999999999999999999999988776443
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.04 E-value=0.49 Score=37.65 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=57.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-.+...|++++|..+|+.... +. |+.. -|-.|=-++-..|++++|...|.....-..-|...+=.+=.++.+.|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~-~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI-YD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 346678888888888877754 33 4333 34444445556788888888888765544113445555556678888888
Q ss_pred HHHHHHHHHHH
Q 026993 169 STVRIYGLMKR 179 (229)
Q Consensus 169 ~A~~~f~~M~~ 179 (229)
.|.+.|+.-+.
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 88888876554
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.03 E-value=1.5 Score=41.41 Aligned_cols=128 Identities=9% Similarity=0.064 Sum_probs=103.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCH-HHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGE-LEEIDGGDG-RGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~-M~~~g~pd~-~tyn~lI~~~~~ 163 (229)
..++...|..-+..|..+|...++. ....++++++++|.-||. ++-+-|.++|+- |+.-| |. .--+.-++-+.+
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 4577777778889999999999987 441499999999999986 556889999985 66654 33 233567788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-++-..|.-+|+....++.. ||. ..|.-+|.-=...|++..+.++-+.+...++
T Consensus 448 lNdd~N~R~LFEr~l~s~l~----~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLS----ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hCcchhHHHHHHHHHhccCC----hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999999988775 554 7899999999999999999999987777654
No 129
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.99 E-value=0.23 Score=33.12 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=31.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
.|.+.+++++|.++++.+.+.+.-+...|...=..|.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666655544223445555555556666666666666666544
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.87 E-value=0.18 Score=49.21 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
+.+-.+..+|..|+.+.+.++.+- .-..-|..+-+-|+..|+++-|+++|-+-- .++--|..|.++|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 444455677888888888776531 112347778889999999999999998753 4778899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
+|+++-.+-. |-. .....|-+--.-+-+.|++.+|++++-
T Consensus 809 da~kla~e~~--~~e----~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPE----ATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHhc--Cch----hHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 9998765443 322 455667666667778888888887763
No 131
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.71 Score=43.12 Aligned_cols=118 Identities=10% Similarity=-0.001 Sum_probs=86.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---------HHHHHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD---------GRGLSRVVRAVV 162 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd---------~~tyn~lI~~~~ 162 (229)
+-|++++++++..|++..+++. .-...||-.-..+.-.+++++|.+-|+.-.+-. |+ ...--.++-.-
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-~~~~~~~v~~~plV~Ka~l~~q- 514 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-PREHLIIVNAAPLVHKALLVLQ- 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc-cccccccccchhhhhhhHhhhc-
Confidence 3478899999999999988754 334457777777889999999999998754321 22 11111122111
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
-.++++.|.++..+-.+..- -....|-+|-.--...|++++|.++|++--
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dp-----kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDP-----KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhHHHHHHHHHHHHccCc-----hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23788999999988877653 467899999999999999999999998643
No 132
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.69 E-value=0.51 Score=41.05 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEY 191 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~ 191 (229)
+.+++.++..+..+|+++.+.+.++++.....-|...|-.||.+|.+.|+...|.+.|+.|.. .|+. |-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~----P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID----PAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC----ccHH
Confidence 457889999999999999999999999887644889999999999999999999999998865 6886 9998
Q ss_pred HHHHHHHHH
Q 026993 192 VGKVLSKGL 200 (229)
Q Consensus 192 Ty~~Li~~~ 200 (229)
+.......+
T Consensus 229 ~~~~y~~~~ 237 (280)
T COG3629 229 LRALYEEIL 237 (280)
T ss_pred HHHHHHHHh
Confidence 888777774
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.53 E-value=0.97 Score=41.83 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~ 144 (229)
.|.+.|++++|+..|+.-.+ .. ||. .+|..+-.+|.+.|++++|...+++-.
T Consensus 84 AL~~lGryeEAIa~f~rALe-L~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 84 SLFSKGRVKDALAQFETALE-LN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHcCCHHHHHHHHHHHHh-hC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555544322 12 331 234445555555555555555554443
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.47 E-value=0.3 Score=32.22 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG-EEELANEVEREF 216 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g-~~~~A~~v~~e~ 216 (229)
.+|..+=..+.+.|++++|+..|.+-.+..- -+...|..+-.++.+.| +.++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3444444445555555555555555444321 23334444444455555 355555544433
No 135
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.33 E-value=1.4 Score=45.82 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.|..|...|-+.+++++|.++++.|.++-+-....|...+..+.+...-+.|.+++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 34444444444444444444444444332112334444444444444433333333
No 136
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.32 E-value=1.3 Score=41.90 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
++|.-|-..|-+.|+.++|.+..++-.+. .|+ +-.|.+--+-|-+.|++++|.+.+++-..... -|.+.=+-.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DRyiNsK~ 268 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADRYINSKC 268 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhHHHHHHH
Confidence 34455567788999999999999987654 466 45788888889999999999999999988876 699999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
.+.+.++|++++|+++..-+-+..
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999999999999998876654
No 137
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.30 E-value=1.9 Score=40.86 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=96.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
.+-..|+.+.|++..+.-.+ .. |. +-.|..--..|-+.|++++|.+..++-.+-..-|...=|--+..+.++|++++
T Consensus 203 hyd~~g~~~~Al~~Id~aI~-ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIE-HT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 34578999999988886654 44 65 55788888899999999999999998877664588888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVG------KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty------~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+++....+.+.. ..-|..-. .-.-.+|.+.|+...|.+-|....++
T Consensus 281 A~~~~~~Ftr~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 281 AEKTASLFTREDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHhhcCCCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999988776643 00233211 44567889999999998877765553
No 138
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.26 E-value=2.2 Score=39.70 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
+..+|++++.+...-+. .|..+...|-+.|-+.|+-..|.+...+--.--..|.-|..=|-.-|....-.++|+..|++
T Consensus 573 d~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred CHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444433322233 46667777778888888888887766553221133555555555666666677888888876
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 177 MKRSGVGCSWKVDEYVGKVLSKGL-RRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 177 M~~~g~~~~~~Pd~~Ty~~Li~~~-~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
-.- +. |+.+-|-.||-.| -+.|+...|.+++++..+.+|.+++
T Consensus 652 aal--iq----p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 652 AAL--IQ----PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HHh--cC----ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 542 33 9999999988766 5789999999999999999988775
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.23 E-value=1.1 Score=44.38 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=92.3
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTL--AKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~--~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
...+++..|++-...+.+++ || ..|..++.+| .|.|+.++|..+++.....+.-|.-|..++-..|-..|+.|+|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35677888888888776653 44 3567777765 5789999999999988766633889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.+|++.... - |+..-...+..++.+.+.+..-.++--+|.+.
T Consensus 97 ~~~Ye~~~~~--~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 97 VHLYERANQK--Y----PSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHhh--C----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988754 2 88888889999999999887755554444443
No 140
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.23 E-value=0.31 Score=32.48 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
.+.+.++++.|+++++.+.+... .|...|...=.+|.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46789999999999999977543 466777778889999999999999999987664
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.99 Score=39.06 Aligned_cols=121 Identities=11% Similarity=0.016 Sum_probs=84.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG----LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~----ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+.|..+.+.|.+..+.|.+. . |-- .-++.|....-.+++.+|.-+|++|-++-.|+..+-|-+-..+...|
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i-d--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI-D--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-c--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 3455666788888888887652 1 222 34456666666778999999999998755789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA-NEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A-~~v~~e~~~ 218 (229)
++++|..++++-..+.- -|.-|..-+|-.-...|.-.++ .+.+..++.
T Consensus 222 ~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999987654 3445554455444556655443 344444433
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.20 E-value=0.38 Score=31.72 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG-SKESTVRIYGLMKR 179 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g-~~~~A~~~f~~M~~ 179 (229)
..+|..+=..+.+.|++++|...|.+..+...-+...|..+=.+|.+.| +.++|++.|++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666667777788888888887766554224567777777777777 67888877766543
No 143
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=1.1 Score=41.84 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
++++..|..||+.-...-. .++..|-.-+.+=-|++.+++|..+|+.-..- .|-+ ..|=--|..=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4566678888887755422 57788888999999999999999999986543 2332 3455555566778999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 174 YGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|++-.+ |+||...|.+.|+-=.+...++.|+.|+..+--
T Consensus 164 ferW~~------w~P~eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 164 FERWME------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred HHHHHc------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 988653 459999999999999999999999999986644
No 144
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.04 E-value=1 Score=35.28 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=55.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcC
Q 026993 90 RELIRQGECAVAVHVFSTIQREY--QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~--~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g 165 (229)
....+.|+++.|.+.|+.+...+ ..--.-..-.|+.+|.+.|++++|...++...+.. .|+ +-|--.+.|++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 44567888888888888887763 21123445578888888888888888888877665 443 56777777777665
Q ss_pred CHH
Q 026993 166 SKE 168 (229)
Q Consensus 166 ~~~ 168 (229)
+.+
T Consensus 97 ~~~ 99 (142)
T PF13512_consen 97 QDE 99 (142)
T ss_pred Hhh
Confidence 544
No 145
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.86 Score=43.08 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHHH---cC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 95 QGECAVAVHVFSTIQRE---YQ--QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~---~~--~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
.+.+.+|...|+..... .. ++ ...+++.|=+.|-|.+++++|...|+.-.....-|..+|+++=-.|...|.+|
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 45677788887766532 11 11 23356666678888888888888887765544347778888877788888888
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
.|.+.|.+-. ++. ||..+-+.|++.+...
T Consensus 507 ~Aid~fhKaL--~l~----p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKAL--ALK----PDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHH--hcC----CccHHHHHHHHHHHHh
Confidence 8888887765 344 8887777777765544
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=1 Score=42.87 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH--HHHHH--
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV--VRAVV-- 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l--I~~~~-- 162 (229)
+=+......|++++|.+.-..+...+. -|...+..=+-++.+.+++++|.++.+.=. -.-++|+. =.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~-----~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNG-----ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-----hhhhcchhhHHHHHHHH
Confidence 334444556677777776666654332 233333344446777777777774443211 11233333 45555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+.+..|+|+..++ |+. ++. .+--.=-..|-+.|++++|..||+.+-+
T Consensus 91 rlnk~Dealk~~~-----~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHh-----ccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5567777777665 443 332 2444444556677777777777776633
No 147
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=1.4 Score=38.21 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHH-----
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRA----- 160 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~----- 160 (229)
++..+.-.|++...+..++++++.+ . -+...-..|..+--+.|+++.|...|++.++.. +.|..+++.++..
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3444445567777788888887753 3 466666677777777899999999999887766 7788888887753
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 161 VVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK--VLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~--~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|.-+.++..|.+.|.+..+..- -|.+.-| +|+--| .|+..+|.+....+....|+-
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~-----~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDP-----RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred eecccchHHHHHHHhhccccCC-----CchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCcc
Confidence 3445678888888988887654 3444333 444444 588999999999888875543
No 148
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=4.3 Score=37.87 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
|-..|-.|=.+|.-.++..-|.-.|.+-.+-..-|...|.+|=..|-+.++.++|...|+.-...|. -+...|.-
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-----te~~~l~~ 471 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-----TEGSALVR 471 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-----cchHHHHH
Confidence 4445555556666777777777777765543222678999999999999999999999999988776 35677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 026993 196 LSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|-+.+-+.++..+|.+.+...
T Consensus 472 LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999998888644
No 149
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.42 E-value=2.5 Score=39.27 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC-CCCHHHHHHHHHHHHHc
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-ID-GGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-~g-~pd~~tyn~lI~~~~~~ 164 (229)
+.+++++.+|.++|..+.++.. .|- -+.-+-+|++|.-++ ++.-.....+..+ .| .+-...|-.|.. .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHh
Confidence 5688999999999999977633 021 345667888888754 4444444555543 33 444444444443 588
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 165 GSKESTVRIYGLMKRS--GVGCSW--------KVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~--g~~~~~--------~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+++|.+.+..-.+. +-..+| -+|-+-=++.+.++.+.|++.+|+.+++.+.+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8999999998776554 321111 145555588999999999999999999877653
No 150
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.34 E-value=1.1 Score=43.09 Aligned_cols=100 Identities=18% Similarity=-0.014 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR-GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~-tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
.++--++..|-+.|+++.|....+.-... .|+.+ -|-+=-+.++++|.+++|..++++-.+..- ||.+.=+--
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-----aDR~INsKc 445 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-----ADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-----hhHHHHHHH
Confidence 44556788899999999999999987642 55543 444444788999999999999999988765 898887778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+-+.++.+.++|.++.-.+-+..-+.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccch
Confidence 888899999999999998777754333
No 151
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.29 E-value=1.8 Score=33.92 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYV 192 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~T 192 (229)
....|+.=... .+.|++++|.+.|+.+..+- .-..-.-=-|+.+|.+.|++++|...+++.++..-. .|+ +-
T Consensus 10 ~~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~-vd 84 (142)
T PF13512_consen 10 PQELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPN-VD 84 (142)
T ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCC-cc
Confidence 34455554443 46789999999999998764 113356667899999999999999999998876543 376 56
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHHHhhhcCCCC
Q 026993 193 GKVLSKGLRRFGE-----------------EELANEVEREFCWVPGGS 223 (229)
Q Consensus 193 y~~Li~~~~~~g~-----------------~~~A~~v~~e~~~~~~~~ 223 (229)
|.-...|++.... +..|..-|+++-+..|.|
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 7777777665543 889988888777665544
No 152
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=1.7 Score=39.27 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVV-RAVVEAGSKESTVRIYG 175 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI-~~~~~~g~~~~A~~~f~ 175 (229)
++++.+-....++.-+..-|++.|| +-.+++--|...+|+++|-.+......|..+|-+++ +.|.++|..+.|.++|-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4444444444444433314555555 456888899999999999876532234778887766 56789999999998776
Q ss_pred HHHHcCCCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCCC
Q 026993 176 LMKRSGVGCSWKVDEYVG-KVLSKGLRRFGEEELANEVEREFCWV--PGGSLEN 226 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty-~~Li~~~~~~g~~~~A~~v~~e~~~~--~~~~~~~ 226 (229)
.|... .+.++. -.+-+-|-+++.+--|.+-|+++++. .+..|++
T Consensus 453 k~~t~-------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 453 KTNTP-------SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred hcCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence 66432 233443 44557788999999999999999886 4445543
No 153
>PLN02789 farnesyltranstransferase
Probab=92.87 E-value=6.5 Score=34.86 Aligned_cols=104 Identities=8% Similarity=0.001 Sum_probs=76.4
Q ss_pred hcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 94 RQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 94 ~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+.| .+++++..++.+.+... -+..+|+.---.+-+.|+ .+++..++++|.+...-|..+|+-.-..+.+.|++++|
T Consensus 83 ~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence 345 57899999988876533 344556654444556665 36788889898876644789999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
++.++++++... -|...|+-....+.+.
T Consensus 162 L~~~~~~I~~d~-----~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 162 LEYCHQLLEEDV-----RNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHCC-----CchhHHHHHHHHHHhc
Confidence 999999999876 4556665555555554
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.81 E-value=3.5 Score=32.80 Aligned_cols=91 Identities=10% Similarity=-0.059 Sum_probs=69.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
.-+...|++++|..+|.-...-..-+..-|-.|=-.+=..|++++|++.|......... |-..|=-+=.++...|
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-----dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-----APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHcC
Confidence 34678999999999999987664224455556655666778999999999998877653 5566666778899999
Q ss_pred CHHHHHHHHHHhhhcC
Q 026993 205 EEELANEVEREFCWVP 220 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~ 220 (229)
+.+.|++-|+-.-...
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998655543
No 155
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.77 E-value=3.4 Score=31.37 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
-.++..+.+.+........++++.+... .+...+|.+|..|++.++ ++..+.+.. . .+......+++-|-+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c---cccCCHHHHHHHHHHcC
Confidence 3567777777888888888888765533 566789999999998754 344444442 1 23344555788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+++|.-++.+|. .. .+ ....+|+. .++++.|.+..++
T Consensus 84 l~~~~~~l~~k~~---~~----~~--Al~~~l~~---~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDG---NF----KD--AIVTLIEH---LGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhc---CH----HH--HHHHHHHc---ccCHHHHHHHHHh
Confidence 8888888887763 21 11 22223332 2667777776664
No 156
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.61 E-value=1.9 Score=32.81 Aligned_cols=89 Identities=9% Similarity=0.055 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
-...+|..+-+.+..+.+..+++.+...+..+...+|.+|..|++.. .++.++.+.. . .+.+...-+++
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--------~~~yd~~~~~~ 77 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--K--------SNHYDIEKVGK 77 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--------cccCCHHHHHH
Confidence 35678899999999999999999988776446779999999999874 4455555542 1 23344444566
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 026993 199 GLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~ 218 (229)
-|.+.+.++++.-++..++.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN 97 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC
Confidence 66666666666555554443
No 157
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.45 E-value=2.5 Score=36.49 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEID-----GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-----~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
.|+.=++ +.+.|++.+|..-|.+-.++. .||..-| |=..+...|++++|-.+|..+.+.--.+++-||..-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall- 219 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL- 219 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH-
Confidence 5888775 457788999999999988764 3444444 667889999999999999999874322333355433
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-|-....+.|+.|+|+..|+++-+..|++
T Consensus 220 -Klg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 -KLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 36677889999999999999887765553
No 158
>PLN02789 farnesyltranstransferase
Probab=92.39 E-value=7.5 Score=34.45 Aligned_cols=116 Identities=9% Similarity=-0.080 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH--HHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDL-GLLTDLINTLAKNG-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK--EST 170 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~-~ty~~LI~~~~k~g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~--~~A 170 (229)
.++.+.|+.+.+.+.+. . |+. ..|+.-=..+.+.| .+++|...++++.+...-+..+|+---..+-+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~l-n-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRL-N-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHH-C-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34455555555554432 1 221 22332222333344 355666666655544311333455333333344432 455
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
++++++|.+..- -|..+|+----.+...|++++|.+.+.++-
T Consensus 128 l~~~~kal~~dp-----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 128 LEFTRKILSLDA-----KNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHhCc-----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555555554432 245555555555555566666655555443
No 159
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.13 E-value=3.3 Score=38.66 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhhC--C--CCCHHHHHHHHHHHHHcCCHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLIN-TLAKNGLTGEVDRLIGELEEI--D--GGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~-~~~k~g~~~~A~~lf~~M~~~--g--~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
....+.|.++.+.+++.| ||...|.-.-. .+...|++++|.+.|++.... . +-....|--+...++-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 456778999999987765 77777755553 455689999999999975431 1 2344556667777888999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHhhhc
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE-------ELANEVEREFCWV 219 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~-------~~A~~v~~e~~~~ 219 (229)
|.+.|.++.+..- |-+-.++|-.- -++...|+. ++|.++|++....
T Consensus 324 A~~~f~~L~~~s~---WSka~Y~Y~~a-~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESK---WSKAFYAYLAA-ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccc---cHHHHHHHHHH-HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999987532 23666666432 233456777 7888888766554
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.07 E-value=1.1 Score=41.54 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCCCCCHHHH-
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGL-MKRSGVGCSWKVDEYVG- 193 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~-M~~~g~~~~~~Pd~~Ty- 193 (229)
+.|...|+..-|..-++.|+.+|-+..+.| .+++..|+++|.-+|. |+...|.++|+- |+. + ||.-.|
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f-----~d~~~y~ 469 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--F-----PDSTLYK 469 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--C-----CCchHHH
Confidence 445555555555555555555555555555 4555555555554443 344555555542 221 1 343333
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 026993 194 KVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.--+.-+...++-+-|+.+|+
T Consensus 470 ~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 470 EKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHH
Confidence 234444445555555555544
No 161
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=2.3 Score=40.34 Aligned_cols=123 Identities=10% Similarity=-0.060 Sum_probs=84.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hCC--CC-CHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELE----EID--GG-DGRGLSRVVRAV 161 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~----~~g--~p-d~~tyn~lI~~~ 161 (229)
-++.+.+....|.+.|.+-..... +|=+.-+-.++.- - .+.+.+|...|..-. +.+ .+ -..++|.|=+.|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~-~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-T-YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee-h-HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 356778899999999977654321 1322223333211 1 135677888876543 222 22 235788888999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-|.++.++|+..|+.-....- -|.-||+++-=.+...|+++.|...|.+.--.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~-----k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSP-----KDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999998876543 57788888888888899999999999765443
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.00 E-value=5.3 Score=32.64 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHc-
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEA- 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~- 164 (229)
-..+.+.|++..|.+.|+.+...+. .|- .-..-.+..++-+.|++++|...|++..+.- .....-|.-.+.|.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3456789999999999999987732 121 2344567889999999999999999977654 22233455555555432
Q ss_pred ------------CCHHHHHHHHHHHHHc
Q 026993 165 ------------GSKESTVRIYGLMKRS 180 (229)
Q Consensus 165 ------------g~~~~A~~~f~~M~~~ 180 (229)
+...+|+..|++.+..
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHH
Confidence 2335677777777654
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.69 E-value=0.75 Score=42.53 Aligned_cols=95 Identities=9% Similarity=-0.020 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
+...|+.+=.+|.+.|++++|...|++-.+. .||. .+|..+-.+|.+.|++++|.+.|.+..+.+- | .+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn-----~-~f 146 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN-----L-KF 146 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----h-hH
Confidence 5678999999999999999999999985544 4885 4699999999999999999999999987542 3 23
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHhhhc
Q 026993 192 VGKVLSK--GLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~--~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..+.+ .+....+.++..+++++..+.
T Consensus 147 --~~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 147 --STILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred --HHHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 22222 233444555777888877765
No 164
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.52 E-value=2.5 Score=37.15 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCC----------------HHHHHHHHHHhhhCC-CCCHHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGL----------------TGEVDRLIGELEEID-GGDGRGLS 155 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~----------------~~~A~~lf~~M~~~g-~pd~~tyn 155 (229)
+.++++-....+..|++- .. .|+-+|+.||+.+-|..- -+=|..++++|+..| .||--+--
T Consensus 84 ~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~ 162 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIED 162 (406)
T ss_pred ccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHH
Confidence 345566555556667654 55 899999999988766542 234789999999999 99999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHH
Q 026993 156 RVVRAVVEAGS-KESTVRIYGLMKR 179 (229)
Q Consensus 156 ~lI~~~~~~g~-~~~A~~~f~~M~~ 179 (229)
.||++|.+.+. ..+..++.--|.+
T Consensus 163 ~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 163 ILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHhccccccHHHHHHHHHhhhh
Confidence 99999999884 3455555555543
No 165
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.51 E-value=5.1 Score=37.38 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=96.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCHHHH-HHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGE-LEEIDGGDGRGL-SRVVRAVVE 163 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~-M~~~g~pd~~ty-n~lI~~~~~ 163 (229)
.+....|..-++.|..+|-..++. .. +++++|+++|.-+|. |+..-|.++|+- |.. .||...| +--+.-+.+
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~-h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVG-HHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCC-cceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHH
Confidence 566777778899999999999887 56 999999999998886 556789999975 554 3565433 456666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-++-+.|..+|+.-++.= . -+ ...|-.+|+-=...|++.-+..+-+.|.+..|
T Consensus 479 inde~naraLFetsv~r~-~----~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 479 INDEENARALFETSVERL-E----KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hCcHHHHHHHHHHhHHHH-H----HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 899999999998554421 1 23 46899999999999999888888887777543
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.51 E-value=4.8 Score=30.40 Aligned_cols=87 Identities=17% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHH-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---H-HHHHHHHHHHHHc
Q 026993 91 ELIRQGECAVAVHVFSTIQRE-YQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD---G-RGLSRVVRAVVEA 164 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~-~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd---~-~tyn~lI~~~~~~ 164 (229)
.+-..|+.++|+.+|+.-... ...++ ...+-.+=+.|..-|++++|..+|++.... .|+ . .....+--++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHHC
Confidence 344567777777777766543 21011 123334445666777777777777765543 233 1 1111222355666
Q ss_pred CCHHHHHHHHHHHH
Q 026993 165 GSKESTVRIYGLMK 178 (229)
Q Consensus 165 g~~~~A~~~f~~M~ 178 (229)
|+.++|++.+-.-.
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777665444
No 167
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.47 E-value=8.1 Score=37.67 Aligned_cols=92 Identities=13% Similarity=-0.057 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 124 INTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
..-+-+.|++..|..+++..-+...-+...|=.-+.--..+.++|.|..+|.+-...+ |...+|.--++-.--.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s------gTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS------GTERVWMKSANLERYL 664 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC------CcchhhHHHhHHHHHh
Confidence 3445567888888888887766542256778788888888888888888888776543 6666665555666667
Q ss_pred CCHHHHHHHHHHhhhcCC
Q 026993 204 GEEELANEVEREFCWVPG 221 (229)
Q Consensus 204 g~~~~A~~v~~e~~~~~~ 221 (229)
+.+|+|.++++|.-+.++
T Consensus 665 d~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFP 682 (913)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 888888888887766543
No 168
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.01 E-value=6.9 Score=31.24 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
+.++..=.+.++.+.+..+++.++-- -..+.+-++-.+| +.+.|++.+|.++|+++.+.+ -...|..-+-++|-.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 34555556778999999999999753 1124555666665 568999999999999997653 223455556667766
Q ss_pred CCHHHHHHHHH-HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 165 GSKESTVRIYG-LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 165 g~~~~A~~~f~-~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
..-|...+.+- +..+.|.. |+.. .|++.+.+......|...
T Consensus 90 ~~~D~~Wr~~A~evle~~~d----~~a~---~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGAD----PDAR---ALVRALLARADLEPAHEA 131 (160)
T ss_pred HcCChHHHHHHHHHHhcCCC----hHHH---HHHHHHHHhccccchhhh
Confidence 67777777774 46666543 4443 367777666666555553
No 169
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.86 E-value=4.3 Score=35.65 Aligned_cols=27 Identities=4% Similarity=0.144 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhCC----CCCHHHHHHHHHH
Q 026993 134 GEVDRLIGELEEID----GGDGRGLSRVVRA 160 (229)
Q Consensus 134 ~~A~~lf~~M~~~g----~pd~~tyn~lI~~ 160 (229)
..|..+|+.|++.. .++.+++.+|+.+
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 33445555554443 3344445444443
No 170
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.74 E-value=6.6 Score=34.49 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCC-
Q 026993 97 ECAVAVHVFSTIQRE--Y-QQQDLGLLTDLINTLAKNGL----TGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGS- 166 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~--~-~~pd~~ty~~LI~~~~k~g~----~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~- 166 (229)
....|..+|+.|++. + ..++-+.+.+|+.+ ..+. .++++..|+.+...| +-|..-+-+-|-+++..-.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 355789999999988 2 24788899999877 3333 466788899998888 5566667777767765543
Q ss_pred --HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC--C---HHHHHHHHHHhhhcC
Q 026993 167 --KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG--E---EELANEVEREFCWVP 220 (229)
Q Consensus 167 --~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g--~---~~~A~~v~~e~~~~~ 220 (229)
..++.++++.+.+.|+. +-...|.++ ..++-.+ . ++.-.++.+++++..
T Consensus 196 ~~v~r~~~l~~~l~~~~~k----ik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~~k 251 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVK----IKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKEQK 251 (297)
T ss_pred HHHHHHHHHHHHHHHcCCc----cccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhhCc
Confidence 34688999999999996 666667643 3333233 3 333455555555543
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.45 E-value=6 Score=33.55 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH-
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLL---TDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVE- 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty---~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~- 163 (229)
-..+.+.|+++.|.+.|+.+...+. -..... -.+..+|-+.|++++|...|++..+.. .-..+-|.-.+.|.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3445678999999999999987643 222333 245678899999999999999988765 2223456666666653
Q ss_pred -cC------------------CHHHHHHHHHHHHHc
Q 026993 164 -AG------------------SKESTVRIYGLMKRS 180 (229)
Q Consensus 164 -~g------------------~~~~A~~~f~~M~~~ 180 (229)
.+ ...+|++.|++.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 11 135677788877764
No 172
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.43 E-value=0.053 Score=41.62 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+++.+.+.+.+......++.+.+. .. -+....|.++..|++.++.++..+++... +..-...++.-|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~~------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKTS------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSS------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHcccc------cccCHHHHHHHHHhcch
Confidence 444444455555555555555433 22 33455555555555555545554444411 11223345555555555
Q ss_pred HHHHHHHHHHH
Q 026993 167 KESTVRIYGLM 177 (229)
Q Consensus 167 ~~~A~~~f~~M 177 (229)
+++|.-+|.+|
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555544
No 173
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.19 E-value=22 Score=35.68 Aligned_cols=118 Identities=10% Similarity=-0.006 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
|+.++|..++.++.++-. .+...|-+|=..|=..|+++++...+----....-|.--|-.+=.-..+.|.++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666666666666554422 3444566666666666666665554433322222234455555555555555556655555
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-+...- +|.--+-==..-|-+.|+...|..=|.++-..
T Consensus 232 rAI~~~p-----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 232 RAIQANP-----SNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHhcCC-----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 5554321 12111111223344455555555555544443
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.14 E-value=4.3 Score=35.63 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=72.6
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.+.+++.+|+..|.+-.+ +..-|.+.|.-=--+|++.|+++.|++=-+.-..-+..-..+|..|=.+|...|++++|.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 345678888888877654 3313677787778899999999999887666544321125799999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHH
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
-|++-.+ +. ||--+|-.
T Consensus 171 aykKaLe--ld----P~Ne~~K~ 187 (304)
T KOG0553|consen 171 AYKKALE--LD----PDNESYKS 187 (304)
T ss_pred HHHhhhc--cC----CCcHHHHH
Confidence 9987765 33 88888754
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.98 E-value=2.6 Score=37.36 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
+-+..|.-+...|+...|.++-.+-+ .||-.-|-..|.+|+..|++++-.++-.. .-. | +-|-..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs----P--IGyepFv~ 245 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS----P--IGYEPFVE 245 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC----C--CChHHHHH
Confidence 45566777888999999988877764 58999999999999999999977664332 212 4 67888999
Q ss_pred HHHhcCCHHHHHHHHHH
Q 026993 199 GLRRFGEEELANEVERE 215 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e 215 (229)
.|.+.|+..+|.++...
T Consensus 246 ~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 99999999999988765
No 176
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.86 E-value=14 Score=37.47 Aligned_cols=121 Identities=8% Similarity=0.014 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-------------
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG------------- 151 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~------------- 151 (229)
..++..+.+.+++++|.++.+.-.+... .+....|..+ .|...++.++|..+ .+...-..+.
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence 3567777799999999998885444321 1333444444 67777778887776 3221111111
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 152 ------RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 152 ------~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
..+-+|-.+|-+.|+.++|..+|++..+-.. -|..+.|-+--.|... ++++|.+++...
T Consensus 111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-----~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-----DNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3444455566677999999999999998764 4667777777788888 999998887643
No 177
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.63 E-value=10 Score=37.85 Aligned_cols=124 Identities=11% Similarity=0.009 Sum_probs=80.1
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC--HHHHHHHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGGD--GRGLSRVVRAVV 162 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~pd--~~tyn~lI~~~~ 162 (229)
...|+++.|...++.........+ ...++.+-..+...|++++|...+.+.... |.+. ..+++.+-..+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 467888999888877654321022 134455556677889999999988876542 2111 245566666788
Q ss_pred HcCCHHHHHHHHHHHHH----cCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 163 EAGSKESTVRIYGLMKR----SGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~----~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
..|++++|.+.+.+... .|... .| ....+..+-..+...|++++|...+++...
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQ--LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 89999999998877644 23210 01 334455566667777999998888876644
No 178
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.52 E-value=7.9 Score=36.81 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=46.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhc
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRF 203 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~ 203 (229)
-|--.|.++.|..-|+.-.....-|...||-|=..+....+.++|+.-|.+-++.- |+- +=||.=| +|...
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~yVR~RyNlgI-S~mNl 511 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PGYVRVRYNLGI-SCMNL 511 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CCeeeeehhhhh-hhhhh
Confidence 34445666666666665544321145566666666666666666666666665431 332 3455333 34566
Q ss_pred CCHHHHHHHHHH
Q 026993 204 GEEELANEVERE 215 (229)
Q Consensus 204 g~~~~A~~v~~e 215 (229)
|.+++|.+.|-+
T Consensus 512 G~ykEA~~hlL~ 523 (579)
T KOG1125|consen 512 GAYKEAVKHLLE 523 (579)
T ss_pred hhHHHHHHHHHH
Confidence 666666666654
No 179
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.04 E-value=11 Score=37.55 Aligned_cols=126 Identities=11% Similarity=-0.074 Sum_probs=84.9
Q ss_pred HHhcCCHHHHHHHHHHHHHH---cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC----CHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE---YQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGG----DGRGLSRVV 158 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~---~~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~p----d~~tyn~lI 158 (229)
+...|+++.|...+.+.... ...+. ..+++.+-..+...|++++|...+++.... |.+ ....+..+-
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 45689999999999887643 22122 234555666788899999999998875432 211 223455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS--GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..+...|++++|.+.+.+.... .... ......+..+-......|+.++|.+.+.+....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677889999999999887542 1110 012344555666788899999999998877554
No 180
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=88.74 E-value=19 Score=32.88 Aligned_cols=120 Identities=9% Similarity=0.005 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
.|++..|.++...-.+.-. --+..|..=..+--..|+.+.|.....+.-+.. .++...+=+.-.-....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 6899999987766443222 224456666677788899999999999988764 77788888899999999999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 174 YGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..+..+.+- -+..........|.+.|++.....++..+.+..
T Consensus 176 v~~ll~~~p-----r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 176 VDQLLEMTP-----RHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHhCc-----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 999988774 467788999999999999999999998888753
No 181
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.62 E-value=6 Score=29.32 Aligned_cols=61 Identities=13% Similarity=-0.070 Sum_probs=49.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+.+-..|++++|..+.+.+. .||...|-.|-. .|.|..+++..-+.+|..+|- |-..+|.+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~---~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~-----p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC---YPDLEPWLALCE--WRLGLGSALESRLNRLAASGD-----PRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCC---CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCC-----HHHHHHHH
Confidence 45677899999999888775 589999988765 588888888888889998886 77777753
No 182
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.57 E-value=4.1 Score=36.94 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHH-cCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 97 ECAVAVHVFSTIQRE-YQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~-~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
++..|.+.|+-+-+. .. -|.+ -=-++-+.+.-..++++..-.++.++.-- .-|.+-|| +-.++|..|.+.+|.++
T Consensus 338 HlKiAqqffqlVG~Sa~e-cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALE-CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHH
Confidence 566778777666443 22 1221 12234455555667899888888887655 55666676 56889999999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHh
Q 026993 174 YGLMKRSGVGCSWKVDEYVGK-VLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~-~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|-......+ -|-++|. .|-+++.+.++.+.|..++-.+
T Consensus 416 f~~is~~~i-----kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 416 FIRISGPEI-----KNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhhhcChhh-----hhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 976654444 5788985 5567889999999999887643
No 183
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=9.3 Score=35.98 Aligned_cols=124 Identities=7% Similarity=-0.072 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
|....+-.+..+.|+.-..--. .||+ |..==.++.-.+++++|..=|++-.+-..-+...|-.+=-+..|.++++++
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554433211 1333 322223333445778888888877654322567777777788899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+..|++-+++ ++ -...+|+-.-..+...++++.|.+.|+-..+..+.
T Consensus 448 m~~Fee~kkk-FP----~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 448 MKTFEEAKKK-FP----NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHh-CC----CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999998875 32 23345666777889999999999999876665443
No 184
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.29 E-value=5.9 Score=39.21 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH-----------
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV----------- 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l----------- 157 (229)
.+.|...|+++.|.++|-+- -.++.-|++|+++|+.++|.++-.+.... .-..+.|-+=
T Consensus 772 adhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhHHhhcchh
Confidence 34455566777776666322 23667777888888888887776553210 1122333222
Q ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 ---------------VRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 ---------------I~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|..|-+.|+.|+.+++.++-. ||. -|---+-+-|...|++..|++-|.|.+++
T Consensus 842 eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h---------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 842 EAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH---------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred hhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC---------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 333444444444443333221 333 34445666777778888888777766553
No 185
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=3.4 Score=36.77 Aligned_cols=84 Identities=8% Similarity=-0.030 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHH
Q 026993 95 QGECAVAVHVFSTIQRE----YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~----~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+++.+...+-.++.. +. |+...|+. | -++-.-+.+++..+...=.+-| .||.++++.+|+.+.+.++..+
T Consensus 77 ~~~idd~~~~LyKlRhs~~a~~~-~~~~~~~~-i-rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~ 153 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRHSPNAWYL-RNWTIHTW-I-RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKD 153 (418)
T ss_pred ccchhHHHHHHHHHhcCcchhhh-ccccHHHH-H-HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHH
Confidence 45666776666666543 34 55444332 2 3344456778888888888889 9999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 026993 170 TVRIYGLMKRSG 181 (229)
Q Consensus 170 A~~~f~~M~~~g 181 (229)
|.++.-+|....
T Consensus 154 aa~vvt~~~~qe 165 (418)
T KOG4570|consen 154 AASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHHHH
Confidence 999887776443
No 186
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.66 E-value=12 Score=34.86 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=92.9
Q ss_pred hhhcHHHHHHHHHhcCCHHHHHHHHHHHHHH--cCCC----CHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCC
Q 026993 81 IKHDLLAALRELIRQGECAVAVHVFSTIQRE--YQQQ----DLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGD 150 (229)
Q Consensus 81 ~~~d~~~vl~~l~~~g~~~~A~~vf~~m~~~--~~~p----d~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd 150 (229)
+.+.+..++.-+.=.|+-+.+++.+..-.+. +..| -...|..++..++- ....++|.++++++.++ -|+
T Consensus 187 LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~ 265 (468)
T PF10300_consen 187 LPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPN 265 (468)
T ss_pred CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCC
Confidence 4455566777777789999999888765432 1101 23456666655554 56889999999999876 688
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 151 GRGLSRVVRAV-VEAGSKESTVRIYGLMKRS--GVGCSWK-VDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 151 ~~tyn~lI~~~-~~~g~~~~A~~~f~~M~~~--g~~~~~~-Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
...|.-.-.-+ ...|++++|++.|++.... ... + .....|... -.+.-.+++++|.+.|.++.+..
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~---Ql~~l~~~El~-w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK---QLHHLCYFELA-WCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH---hHHHHHHHHHH-HHHHHHchHHHHHHHHHHHHhcc
Confidence 88776665443 4678999999999976531 211 1 344555544 44667899999999999988754
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.46 E-value=5.6 Score=32.51 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=58.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh
Q 026993 126 TLAKNGLTGEVDRLIGELEEID--GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
.+...|++++|.+.|+++.... .|- ....=.+..++.+.|++++|...|++..+.--. .|. .-|...+.|.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~-~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPK-ADYALYMLGLSY 89 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TT-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---Ccc-hhhHHHHHHHHH
Confidence 4567899999999999998754 121 245667889999999999999999998765211 132 334444444443
Q ss_pred c-------------CCHHHHHHHHHHhhhcCCC
Q 026993 203 F-------------GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 203 ~-------------g~~~~A~~v~~e~~~~~~~ 222 (229)
. +....|...|+++-+..|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 2 2234566667666554443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=15 Score=32.08 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQ-QQDLGL-LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~t-y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
|.-+=..+.+.|+.+.|..-|..-.+--. +|++.. |...+..-.-.....+|..+|+++.....-|+.+-.-|=-++.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44455667777888888887777654322 244433 3333322222234566788888877654224455555556777
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 026993 163 EAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g 181 (229)
..|++.+|...+..|.+..
T Consensus 239 e~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HcccHHHHHHHHHHHHhcC
Confidence 8888888888888887764
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.45 E-value=8.6 Score=32.58 Aligned_cols=74 Identities=9% Similarity=-0.035 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC-CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 124 INTLAKNGLTGEVDRLIGELEEID-GGDGRG--LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g-~pd~~t--yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
-..+.+.|++++|.+.|+++...- .+.... .=-+..+|.+.|++++|...|++..+.--. .|+ +-|.....|+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~-~~~a~Y~~g~ 114 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPN-IDYVLYMRGL 114 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCc-hHHHHHHHHH
Confidence 334567899999999999998765 322221 124567889999999999999999875322 143 3555556665
Q ss_pred H
Q 026993 201 R 201 (229)
Q Consensus 201 ~ 201 (229)
+
T Consensus 115 ~ 115 (243)
T PRK10866 115 T 115 (243)
T ss_pred h
Confidence 4
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.11 E-value=6.4 Score=37.29 Aligned_cols=64 Identities=11% Similarity=-0.010 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
+...|.++--.+...|+.++|...|++..+.. |+...|+.+-..|...|+.++|.+.|.+-...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45677777555666799999999999987664 78889999999999999999999999887654
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.10 E-value=1.7 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
+|+.|=..|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4666777777777777777777764
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.95 E-value=17 Score=30.29 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID----GGDGRGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g----~pd~~tyn~lI~~~ 161 (229)
.+-.++.+.|+..+|...|++-... +- .|...--.+-.+...-+++.+|...++++-+.. .||.. -.+-+.|
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~l 170 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTL 170 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHH
Confidence 4567788899999999999988777 66 677777777888888999999999999876653 45543 3455778
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.-.|+.++|..-|+.....- |+...-.----.+.+.|+.++|..-+.
T Consensus 171 aa~g~~a~Aesafe~a~~~y------pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 171 AAQGKYADAESAFEVAISYY------PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HhcCCchhHHHHHHHHHHhC------CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 88899999999898877642 443222223344667888777754433
No 193
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.37 E-value=25 Score=33.87 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=85.3
Q ss_pred HHHHHHhcCCHHHHHHHHH--------HHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--C-CCCH----
Q 026993 88 ALRELIRQGECAVAVHVFS--------TIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI--D-GGDG---- 151 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~--------~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~--g-~pd~---- 151 (229)
.+.-...+|+++.|++++. .+.+- +. |- +-.+++..|.+.+.-+-|-.++++-... . .+..
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~-P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHL-PG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC-hh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 3444567899999999988 33222 33 54 4557888899988888888888764321 1 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
.+|.-...--.+.|+-++|..+++++.+..- +|.-+..-++.+|++. +.+.|..+-+.+
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-----~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFNP-----NDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3444555555688999999999999998653 8999999999999975 677777766543
No 194
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.20 E-value=15 Score=29.06 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.++..=.+.++.+++..+.+.|+-- -+.+.+-++-..| +.+.|+.+||.++|.+..+.+ ....|..-+-++|-..
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHh
Confidence 3343344588899999999988753 1124555666666 458899999999999998764 2236777888888887
Q ss_pred CHHHHHHHH-HHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 166 SKESTVRIY-GLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 166 ~~~~A~~~f-~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
.-|-.-+.+ .++.+.|-. ||.+. |++.+.
T Consensus 91 l~Dp~Wr~~A~~~le~~~~----~~a~~---Lv~al~ 120 (153)
T TIGR02561 91 KGDAEWHVHADEVLARDAD----ADAVA---LVRALL 120 (153)
T ss_pred cCChHHHHHHHHHHHhCCC----HhHHH---HHHHHh
Confidence 777777777 456666643 44443 555554
No 195
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.96 E-value=8.5 Score=37.41 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCH--HHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE------YQQQDLGLLTDLINTLAKNGLTGE---VDRLIGELEEIDGGDG--RGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~------~~~pd~~ty~~LI~~~~k~g~~~~---A~~lf~~M~~~g~pd~--~tyn 155 (229)
..+.-|++.+++++|-+.+..+..+ .++.+...|+-+-+-.+++-+.-. ...++..+..+ .+|. ..|+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r-ftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR-FTDQLGFLWC 252 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc-CcHHHHHHHH
Confidence 4577788899999999888877532 122566778877777776644333 34444444322 5664 7999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
+|-+-|.+.|++|+|.++|++-...- -.+.-|+.+.++|.....-
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v------~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV------MTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh------eehhhHHHHHHHHHHHHHH
Confidence 99999999999999999998866542 3455677888888765443
No 196
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=85.37 E-value=20 Score=35.17 Aligned_cols=28 Identities=18% Similarity=0.006 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.||.+-.++.+.|+-.+|...++|.-+.
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 4555555555555555555555554443
No 197
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.10 E-value=15 Score=35.07 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCCCCCHHHH-
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID-GG-DGRGLSRVVRAVVEAGSKESTVRIYGL-MKRSGVGCSWKVDEYVG- 193 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~-M~~~g~~~~~~Pd~~Ty- 193 (229)
.+|...|+.--|..-++-|+.+|.+..+.+ .+ ++..++++|.-||. ++.+-|+++|+- |+.- +|+-.|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-------~d~p~yv 438 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-------GDSPEYV 438 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-------CCChHHH
Confidence 467788888888888999999999998888 55 88899999998875 578899999974 4443 454444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..-++-+...++-.-|+.+|+..-.-
T Consensus 439 ~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 439 LKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 56788888999888899999866543
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=84.95 E-value=14 Score=29.63 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=55.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g 165 (229)
--.+-.+|++++|..+|..+... . | |.--|..|=.++=..|++++|..+|..--.-+ .|-.+-| +=..|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~--agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF--TGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch--HHHHHHHhC
Confidence 34456788999999998887553 2 2 22234444455555688888888887543322 2333222 234577888
Q ss_pred CHHHHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKR 179 (229)
Q Consensus 166 ~~~~A~~~f~~M~~ 179 (229)
+.+.|.+.|..-.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88899888877665
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.73 E-value=13 Score=32.05 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTD---LINTLAKNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAVVE 163 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~---LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~~~ 163 (229)
-.+.+.|++..|.+.|....+.|. -+.++-|+ |-..+...|++++|-.+|..+.++- .|-. .+.=-|-....+
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 346688999999999999888754 33333333 6678999999999999999987653 2221 344445556678
Q ss_pred cCCHHHHHHHHHHHHHc
Q 026993 164 AGSKESTVRIYGLMKRS 180 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~ 180 (229)
.|+.|+|..+|.+..+.
T Consensus 228 l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 228 LGNTDEACATLQQVIKR 244 (262)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999998875
No 200
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=84.64 E-value=21 Score=30.67 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID------GGDGR--GLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g------~pd~~--tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
+..+...+.+.|++++|.++|++....- +.++. .++.+| .+...|+...|.+.|++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 4444455666666666666666554321 11111 122222 3444455666666665554
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.64 E-value=14 Score=32.55 Aligned_cols=88 Identities=18% Similarity=-0.007 Sum_probs=70.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCC
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~ 205 (229)
+.+.+++++|...+.+-.+-..-|.+-|..==.+|++.|.++.|++=-+.-+.-. | -.-+|..|=-+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID------PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCc
Confidence 5678999999999999776542367888888899999999999998665544432 3 34689999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 026993 206 EELANEVEREFCWVP 220 (229)
Q Consensus 206 ~~~A~~v~~e~~~~~ 220 (229)
+++|.+-|+..-++-
T Consensus 165 ~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 165 YEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHhhhccC
Confidence 999999987655543
No 202
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.49 E-value=50 Score=34.20 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...|..|-.+-.+.|.+.+|.+-|-+-. |...|--+|....+.|.+|+-++.+ .|.++... ||.+- +.|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL-~MaRkk~~---E~~id--~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYL-LMARKKVR---EPYID--SEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHH-HHHHHhhc---Cccch--HHH
Confidence 3457777788888888888877664432 6678888999999999999888866 45444433 36554 458
Q ss_pred HHHHHhcCCHHHHHHHH
Q 026993 197 SKGLRRFGEEELANEVE 213 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~ 213 (229)
|-+|++.+++.+-++..
T Consensus 1173 i~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHhchHHHHHHHh
Confidence 88888888876655443
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.31 E-value=2.8 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
+|..+-..|.+.|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46677788888888888888888887753
No 204
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.65 E-value=5.5 Score=35.48 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID----GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g----~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
...+-..+|..-....++++|...+.++...- .|+...| +.|.- |-.=+.++++-+...=+.-|+- ||-+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF----~dqf 136 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIF----PDQF 136 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccc----cchh
Confidence 44455566666666789999999998887532 3332222 23333 3344778999999988999997 9999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|++.||+.|.+.|+..+|..|.-+|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888876654
No 205
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.57 E-value=8.2 Score=33.66 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+++.++..+...|+.|.+.+.+++...... -|.--|..|+.+|.+.|+...|...++.+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-----YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5888999999999999999999999998765 59999999999999999999999999988773
No 206
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.49 E-value=15 Score=29.35 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 126 TLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.-.+.++.+++..+++.|.--. .|...++-..|. .+.|++++|.++|+++.+.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC
Confidence 3456779999999999997543 455667777775 89999999999999987654
No 207
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.40 E-value=6.8 Score=31.65 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
||..+|..++..+...|+.++|+++.++++.+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7888888788888888888888888887777655
No 208
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=82.17 E-value=5.9 Score=38.75 Aligned_cols=80 Identities=19% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
.+-..+-+.|-+.+|..+|+... .|--.|..|+..|+.++|-++-..-.++ . ||..-|..|.+...
T Consensus 403 ~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~----~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--D----PDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--C----CcchhHHHhhhhcc
Confidence 45577899999999999999886 5889999999999999999988777762 3 99999999999987
Q ss_pred hcCCHHHHHHHHHH
Q 026993 202 RFGEEELANEVERE 215 (229)
Q Consensus 202 ~~g~~~~A~~v~~e 215 (229)
.-.-+|.|-++++.
T Consensus 469 d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 469 DPSLYEKAWELSNY 482 (777)
T ss_pred ChHHHHHHHHHhhh
Confidence 77777778777763
No 209
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=81.95 E-value=11 Score=31.14 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHH-HHHHcCC--HHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVR-AVVEAGS--KESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~-~~~~~g~--~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
++-+....-.....|++++|..-++++.+.= +.-.-.|+-+.. |||..+. +-+|.-+|.-....+.+ .|+.
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~p---s~~E 105 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLP---SPEE 105 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC---CHHH
Confidence 3345555556667788888888887765421 123457888877 8888884 45777777666655443 1331
Q ss_pred --HHHHHHHHHH--------------HhcCCHHHHHHHHHHhhh
Q 026993 191 --YVGKVLSKGL--------------RRFGEEELANEVEREFCW 218 (229)
Q Consensus 191 --~Ty~~Li~~~--------------~~~g~~~~A~~v~~e~~~ 218 (229)
+.+-.-|.|+ .+.|+++.|++.++=|.+
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444456665 456888998777765444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=20 Score=31.34 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=72.9
Q ss_pred HhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 93 IRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINT-----LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~-----~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
-+.|+.+.|...|+.+.+. -+ .|-.+.+.++.. |.-.+++-+|.+.|++....+..|.+.-|.=--...-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 3579999999999988776 55 677777777753 4456788899999999988764455555543333344678
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
..+|+...+.|++.- |...+-++++-.++
T Consensus 302 l~DAiK~~e~~~~~~------P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQD------PRHYLHESVLFNLT 330 (366)
T ss_pred HHHHHHHHHHHhccC------CccchhhhHHHHHH
Confidence 999999999998753 66666665554444
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.43 E-value=3.8 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
++..+-..+...|++++|++++++.-+..|.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566788999999999999999999888766653
No 212
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.89 E-value=4.4 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
.++|.|-..|...|++++|.+++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666666667777777766666554
No 213
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.83 E-value=41 Score=31.30 Aligned_cols=57 Identities=7% Similarity=-0.106 Sum_probs=41.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 161 VVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+...|+.++|.=-|..-+...- -+.-.|.-|+.+|...|++.||.-.-++..+..+.
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap-----~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAP-----YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHhccchHHHHHHHHHHHhcch-----hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 4466778888887877665431 37788889999999999998887777776665443
No 214
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.79 E-value=28 Score=28.00 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCCCCCH-
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGSKESTVRIYGLMK---RSGVGCSWKVDE- 190 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~~~~A~~~f~~M~---~~g~~~~~~Pd~- 190 (229)
..|..+-+.|++.|+.++|.+.|.++.+.. .+. ...+=.+|....-.|++..+.....+.. +.|.. ++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d----~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD----WERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch----HHHH
Confidence 357778888888999999999888887765 433 3466677888888888888877766553 33322 222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 191 ---YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 191 ---~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-+|..|-. ...|++.+|-+.|-+.--.
T Consensus 113 nrlk~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 23333322 3357888888888766443
No 215
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.71 E-value=4.9 Score=23.10 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
.+++.|-..|...|++++|..++.+..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788899999999999999999988653
No 216
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=24 Score=33.42 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=78.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~~~A 170 (229)
.+..|+++.|+..|-.-..--. +|.+.|..=+.+|.+.|++++|.+=-.+-.+. .||. ..|+-.=.++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL-NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc-CCchhhHHHHhHHHHHhcccHHHH
Confidence 4567899999999976544334 79999999999999999999997654443322 6774 7899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+.-|.+=.+..- -|..-++-|.++.
T Consensus 90 ~~ay~~GL~~d~-----~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-----SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCC-----chHHHHHhHHHhh
Confidence 999988766432 3556666666655
No 217
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.19 E-value=0.23 Score=38.02 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
.+|+.|-+.+.++.+...++.+...+ .-+....|.++..|++.+..++..++++ ... + +-...+++-|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~~-------~-yd~~~~~~~c 80 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TSN-------N-YDLDKALRLC 80 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SSS-------S-S-CTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---ccc-------c-cCHHHHHHHH
Confidence 45666667777777777777777666 5567777888888888777777777665 111 1 3334566677
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 026993 201 RRFGEEELANEVEREFCWV 219 (229)
Q Consensus 201 ~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|.+++|..++..++.+
T Consensus 81 ~~~~l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKLGNH 99 (143)
T ss_dssp HTTTSHHHHHHHHHCCTTH
T ss_pred HhcchHHHHHHHHHHcccH
Confidence 7777777777777766654
No 218
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=79.77 E-value=24 Score=26.61 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=61.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHH
Q 026993 125 NTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLS 197 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li 197 (229)
.++-..|+.++|..+|++-.+.| ..+ ...+=.+=+.|-..|++|+|..+|++-...- || ...-..+-
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~------p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF------PDDELNAALRVFLA 82 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCccccHHHHHHHH
Confidence 35667789999999999988877 322 2456667778889999999999998876531 43 11112234
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 026993 198 KGLRRFGEEELANEVERE 215 (229)
Q Consensus 198 ~~~~~~g~~~~A~~v~~e 215 (229)
-++...|+.++|.+.+.+
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 477889999999887754
No 219
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=79.67 E-value=12 Score=37.40 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=68.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 127 LAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
....+++..|....+.+..+. .+-...+-+++. .|.|+.++|..+++.....+. -|..|..++-..|-+.|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl--~r~gk~~ea~~~Le~~~~~~~-----~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSL--FRLGKGDEALKLLEALYGLKG-----TDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHH--HHhcCchhHHHHHhhhccCCC-----CchHHHHHHHHHHHHHh
Confidence 345678889999998876553 333345555543 689999999999988876665 49999999999999999
Q ss_pred CHHHHHHHHHHhhhcCCC
Q 026993 205 EEELANEVEREFCWVPGG 222 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~ 222 (229)
+.|+|..+++..-...|.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhhHHHHHHHHHHhhCCc
Confidence 999999999876555443
No 220
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.61 E-value=19 Score=28.48 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 130 NGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.++++++..+++.|.--- .+...+|-..|. ...|++++|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccC
Confidence 789999999999996443 445567777775 89999999999999998876
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.55 E-value=34 Score=32.33 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 123 LINTLAKNGLTGEVDRLIGELEEID-G-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M~~~g-~-pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
|=.++-|.|+.+||.+.|.+|.+.. . -+.-..-.||.++.-.++++++-.++.+=.+...+ +--...|+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp---kSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP---KSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC---chHHHHHHHHH
Confidence 4455667899999999999997543 2 23446778999999999999999999886544442 12346676544
No 222
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=79.25 E-value=78 Score=32.29 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
+.+++...+..++.....+.+.|.. +. -+-..+-+|-.+|-+.|+.++|..+++++.+-..-|...-|-+=..|...
T Consensus 87 v~~l~~~~~~~~~~~ve~~~~~i~~-~~-~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 87 LNLIDSFSQNLKWAIVEHICDKILL-YG-ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhhcccccchhHHHHHHHHHHh-hh-hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 3445555555556444444444433 33 34445666666677777777777777766655422445555555555555
Q ss_pred CHHHHHHHHHHHHHcC----------------CCCCCCCCHH---------------------HHHHHHHHHHhcCCHHH
Q 026993 166 SKESTVRIYGLMKRSG----------------VGCSWKVDEY---------------------VGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g----------------~~~~~~Pd~~---------------------Ty~~Li~~~~~~g~~~~ 208 (229)
++++|.+++.+-...- |.+ .||.+ ++-.|-..|-+..++++
T Consensus 164 dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 5555555544332200 000 14433 33344466777778888
Q ss_pred HHHHHHHhhhcCCC
Q 026993 209 ANEVEREFCWVPGG 222 (229)
Q Consensus 209 A~~v~~e~~~~~~~ 222 (229)
+.++++..-++.+.
T Consensus 242 ~i~iLK~iL~~~~~ 255 (906)
T PRK14720 242 VIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHhcCCc
Confidence 98888877766443
No 223
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=79.21 E-value=4.3 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
+|..|-+.|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5778899999999999999999873
No 224
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=78.92 E-value=36 Score=28.18 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=56.5
Q ss_pred hcCCHHHHHHHHHHHHHH---cCCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHhhhCCCCCH----HHHHHHHHHHH-
Q 026993 94 RQGECAVAVHVFSTIQRE---YQQQDLGLLTDLIN-TLAKNGL--TGEVDRLIGELEEIDGGDG----RGLSRVVRAVV- 162 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~---~~~pd~~ty~~LI~-~~~k~g~--~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~- 162 (229)
-.|++++|.+-.+.+.+. .+ .-.-.|..+.. ++|..+. +-||.-++.-....+.|.. +.+-.-|.|.+
T Consensus 41 H~~~~eeA~~~l~~a~~~v~~Lk-~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D 119 (204)
T COG2178 41 HRGDFEEAEKKLKKASEAVEKLK-RLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLAD 119 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHH
Confidence 456788887777776543 22 23345667776 7787774 5567777777765554432 44445666665
Q ss_pred -------------HcCCHHHHHHHHHHHHH
Q 026993 163 -------------EAGSKESTVRIYGLMKR 179 (229)
Q Consensus 163 -------------~~g~~~~A~~~f~~M~~ 179 (229)
+.|+++.|.+.++-|..
T Consensus 120 ~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 120 AVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 78999999999999975
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.92 E-value=15 Score=36.19 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
..+..|...|+-..|.++-.+.+ -||-..|--=|.+++..++.++-+++-.+++ ...-|--.+.+|.+.|+
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHhccc
Confidence 46677778888888886554443 2898899999999999999988877776665 35678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.++|...+.+. ++.. -..++|.+.|++.+|.++--
T Consensus 760 ~~EA~KYiprv----------~~l~---ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 760 KDEAKKYIPRV----------GGLQ---EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhhhhhcc----------CChH---HHHHHHHHhccHHHHHHHHH
Confidence 99999877432 3333 57888999999999876543
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.42 E-value=42 Score=28.77 Aligned_cols=61 Identities=16% Similarity=0.004 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 152 RGLSRVVRAVVEAGSKE---STVRIYGLMKRSGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~---~A~~~f~~M~~~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+...|+.+|...+..+ +|.++.+.+.... || ..+|-.=++.+.+.++.+++.+++.+|-+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 45556666666655433 4444444443221 22 22222234444445566666666655544
No 227
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.83 E-value=27 Score=28.94 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=62.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCCCCCHHHHHHHHHHHHh
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS---GVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~---g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
-..+.|+ ++|.+.|-.+...+.-+...--.-+..|.-..+.++|..++.+..+. +-. +|.-.+.+|.+.+-+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~----~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDN----FNPEILKSLASIYQK 190 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHHH
Confidence 4455565 78999999998777445565666667777788999999999887653 323 889999999999999
Q ss_pred cCCHHHHH
Q 026993 203 FGEEELAN 210 (229)
Q Consensus 203 ~g~~~~A~ 210 (229)
.|+.+.|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99998874
No 228
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.57 E-value=65 Score=33.46 Aligned_cols=87 Identities=9% Similarity=-0.032 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
-|...|-.+|+...+.|..++-.+.+..-.++. .|.+. +.||-+|.+-+++.+-.++. .| ||..-.
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~g------pN~A~i 1197 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-----AG------PNVANI 1197 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----cC------CCchhH
Confidence 467789999999999999999888887766666 77665 48999999998887654422 12 666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 026993 194 KVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~ 214 (229)
--+-+-|-..|.+|.|.-++.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH
Confidence 666666666676666665554
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.47 E-value=34 Score=31.80 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH----------------cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE----------------YQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~----------------~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~ 148 (229)
..+++-|.++|..+.|+++-..-..+ .. -.+...|..|=+...+.|+++-|++.|.+...
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--- 375 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--- 375 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----
T ss_pred HHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---
Confidence 35666677777777776653222111 11 14566788888888888888888888877753
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|..|.--|.-.|+.+.-.++-+.-...|. +|+-..++.-.|++++..+++.+-+++
T Consensus 376 -----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----------~n~af~~~~~lgd~~~cv~lL~~~~~~ 431 (443)
T PF04053_consen 376 -----FSGLLLLYSSTGDREKLSKLAKIAEERGD----------INIAFQAALLLGDVEECVDLLIETGRL 431 (443)
T ss_dssp -----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHT-HHHHHHHHHHTT-H
T ss_pred -----ccccHHHHHHhCCHHHHHHHHHHHHHccC----------HHHHHHHHHHcCCHHHHHHHHHHcCCc
Confidence 66777777777777666665555555553 455555666678888888888876654
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.43 E-value=33 Score=26.93 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
-...-++.+.+.|+-|.-.++..++.+.+.++....--+=.||-+.|...+|-+++.+-=++|.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455567777777777777777777654456666666677777777777777777777777776
No 231
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.27 E-value=46 Score=31.55 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=57.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH-------------------------HHHHhcCCHHHHHHHHHHhhh
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI-------------------------NTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI-------------------------~~~~k~g~~~~A~~lf~~M~~ 145 (229)
++.+.++.+.|++.|.....+++.||+.+-..-. +.+.+.|++.+|.+.++++.+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 4455667777887777765542225544333222 356777888888888888777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 146 IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 146 ~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
+..-|...|..-=-+|.+.|.+..|+.--+.-.+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6533567788777777888877777765444333
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=27 Score=31.92 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=80.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHH--cC--C----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQRE--YQ--Q----------QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~--~~--~----------pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
.+.+.|++..|..-|+...+. +. . .=+.+++.|--+|.|.+++.+|.+.-+...+.+.+|+...=-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 567889999999998875443 11 0 124567788889999999999999888877655556653322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-HhcCCHHHH-HHHHHHh
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL-RRFGEEELA-NEVEREF 216 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~-~~~g~~~~A-~~v~~e~ 216 (229)
==.+|...|.++.|...|.++++.- |+.-.-+.=|..| .+..+.+.. .++|.-|
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~------P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLE------PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346667778999999999998753 7666655444444 444444333 5566544
No 233
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.45 E-value=52 Score=28.80 Aligned_cols=106 Identities=8% Similarity=-0.136 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELE-EID-GGDGR-GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYV 192 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~-~~g-~pd~~-tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~T 192 (229)
|...|--|=..|-+.|++++|..-|..-. -.| +|+.. .|-..+..-.......+|.++|+++.+..- -|..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-----~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-----ANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-----ccHHH
Confidence 67789999999999999999999998754 455 66653 344433322222256799999999997653 35555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCC
Q 026993 193 GKVLSKGLRRFGEEELANEVEREFCWVPGGSLEN 226 (229)
Q Consensus 193 y~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~~ 226 (229)
-.-|=-++...|++.+|...++-|-+..+++.+-
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 5667778889999999999999999887776653
No 234
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=76.10 E-value=85 Score=31.01 Aligned_cols=132 Identities=12% Similarity=-0.015 Sum_probs=107.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
.++..-..|.+.+.++-|..||....+.+. -+-.+|...+..=-..|..++-..+|.+....-.-..+.|-....-+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 356677888889999999999988877665 5778898888888888999999999998876432245678778888889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+|++..|..++....+..- -+.-.|-+-++-......+|.|+.+|.......+
T Consensus 597 agdv~~ar~il~~af~~~p-----nseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANP-----NSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred cCCcHHHHHHHHHHHHhCC-----CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 9999999999998877542 2566788888999999999999999988776544
No 235
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.68 E-value=3.7 Score=22.40 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=11.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCC
Q 026993 199 GLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+.+.|+.++|.++|+++-+..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 34445555555555555554444
No 236
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.42 E-value=2.5 Score=32.81 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHH
Q 026993 126 TLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAV 161 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~ 161 (229)
.+-+.|.-.+|..+|.+|.++| .|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4566677788999999999999 777 488887653
No 237
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.28 E-value=55 Score=28.42 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=84.5
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
-.|++++|+++++.+.++-. .|.++|--=|-..-..|+--+|.+-+++-.+.---|.-.|--+=.-|...|++++|.-+
T Consensus 98 a~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred HhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35788899999998876544 57778876666666666666887777766554334888999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHH-HHHHHHH---HhcCCHHHHHHHHHHhhhcCC
Q 026993 174 YGLMKRSGVGCSWKVDEYVG-KVLSKGL---RRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty-~~Li~~~---~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+++|.-.. |-..-| .-+-..+ +...+++.|++++...-+..+
T Consensus 177 lEE~ll~~------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 177 LEELLLIQ------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHcC------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99998643 543333 3333332 334566678888776555443
No 238
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.97 E-value=25 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~ 144 (229)
||..+|..++..+...|+.++|.++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555555444443
No 239
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.55 E-value=11 Score=35.30 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=55.1
Q ss_pred hcCCHHHHHHHHHHHHHH---cC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE---YQ-----------QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-----GGDGRGL 154 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~---~~-----------~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-----~pd~~ty 154 (229)
++++.+.|++.+..+... .. .+|.+.-+..++++.+.|++.|++.+++.|..+= .=|..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999999888654 11 0455666788899999999999999999887643 3578899
Q ss_pred HHHHHHHHHc
Q 026993 155 SRVVRAVVEA 164 (229)
Q Consensus 155 n~lI~~~~~~ 164 (229)
|.++-.+.++
T Consensus 171 d~~vlmlsrS 180 (549)
T PF07079_consen 171 DRAVLMLSRS 180 (549)
T ss_pred HHHHHHHhHH
Confidence 9977777664
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=73.95 E-value=36 Score=29.22 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 130 NGLTGEVDRLIGELEEID--GG-DGRGLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g--~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
.|++++|.+.|+.+..+. .| ...+-=.++.++.+.++.++|....++..
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444332 11 12233334444444444444444444433
No 241
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=77 Score=29.55 Aligned_cols=121 Identities=15% Similarity=0.075 Sum_probs=81.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----hhhC---------------------
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGE----LEEI--------------------- 146 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~----M~~~--------------------- 146 (229)
+...|+.++|.-.|..-+. ...-+..+|--||+.|...|++.||.-+-++ |...
T Consensus 344 L~~~~R~~~A~IaFR~Aq~-Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQM-LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HHhccchHHHHHHHHHHHh-cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHH
Confidence 4556788888888876643 2202677899999999999999887654432 2221
Q ss_pred -------C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 147 -------D---GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 147 -------g---~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
| .|+ ...-+.+-.-+...|+.++++.+++.-... . ||..--+.|-+.+.....+.+|...|.-
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~-----~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-F-----PDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-c-----cccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 222 133444555566778888888887766542 2 8888888888888888888888777765
Q ss_pred hhhc
Q 026993 216 FCWV 219 (229)
Q Consensus 216 ~~~~ 219 (229)
.-+.
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 5444
No 242
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.83 E-value=95 Score=30.55 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEE-------IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE-- 190 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~-------~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-- 190 (229)
-+--|.-+++.++.++|-+.+..... .|+.+...|+-+-+-..+.-+.-..+.+ +...+.|+.- .+|-
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~r--ftDq~g 248 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRR--FTDQLG 248 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhccc--CcHHHH
Confidence 45566778888888888877765542 2345667788777766665544333332 2222333320 2665
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 191 YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 191 ~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.-|++|-+-|.+.|.+|.|+.+++|...
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5679999999999999999999987644
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=73.70 E-value=45 Score=26.75 Aligned_cols=88 Identities=7% Similarity=-0.123 Sum_probs=62.8
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-+-..|++++|..+|.-+..-+.-|..=|..|=..|=..|++++|.+.|...-..+.. .|-.+-| .-.++...|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~--agqC~l~l~~ 120 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFF--TGQCQLLMRK 120 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccch--HHHHHHHhCC
Confidence 3556899999999999887665224444566666666778999999999876554432 1444444 4567888999
Q ss_pred HHHHHHHHHHhhh
Q 026993 206 EELANEVEREFCW 218 (229)
Q Consensus 206 ~~~A~~v~~e~~~ 218 (229)
.+.|++-|.-..+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988875444
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.56 E-value=74 Score=29.16 Aligned_cols=90 Identities=9% Similarity=0.087 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHH-HHHHHHHHHc
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGL-SRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ty-n~lI~~~~~~ 164 (229)
.+..++.|.+++..|++.-+.... ...+|+- .|.- =.+|...|+++.|+..|..+.+. .|+...- +-|+..--+.
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe-~~~~N~KALyRr-G~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLE-LDPNNVKALYRR-GQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh-cCCCchhHHHHH-HHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHH
Confidence 455667788899999887777654 2213332 1221 13556667899999999999876 4555544 4455544444
Q ss_pred CC-HHHHHHHHHHHHH
Q 026993 165 GS-KESTVRIYGLMKR 179 (229)
Q Consensus 165 g~-~~~A~~~f~~M~~ 179 (229)
.. .++..++|..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 43 3455888988865
No 245
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=72.99 E-value=60 Score=27.82 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHc---CCCCH--HHHHHHHHHHHhc-CCHHHHHHHHHHhh----hCCCCC--HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREY---QQQDL--GLLTDLINTLAKN-GLTGEVDRLIGELE----EIDGGD--GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~---~~pd~--~ty~~LI~~~~k~-g~~~~A~~lf~~M~----~~g~pd--~~tyn~lI~ 159 (229)
+.+.+++++|+..+.....-+ ++++. ..+..+=..|-+. |++++|.+.|.+-. ..|.+. ..++.-+..
T Consensus 84 ~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 84 CYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344558888888777765541 11222 2455555566677 89999999887633 223111 357788889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCS-WKVDE--YVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~-~~Pd~--~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
.+.+.|++++|.++|++....-.... .+.+. +.++++| .+...|+...|.+.+++.+...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999876543200 01222 2345555 4445799999999999988764
No 246
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.92 E-value=53 Score=31.47 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=70.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHh
Q 026993 126 TLAKNGLTGEVDRLIGELEEI-D-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRR 202 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~-g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~ 202 (229)
.+.....+.+..++|-++-.. + .+|...++.|=--|--.|.+|+|++.|+.-.... | |..+||=|--.++.
T Consensus 403 s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~------Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 403 SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK------PNDYLLWNRLGATLAN 476 (579)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC------CchHHHHHHhhHHhcC
Confidence 333444566778888887544 4 5788888888888889999999999999887643 5 67789999999999
Q ss_pred cCCHHHHHHHHHHhhhcCC
Q 026993 203 FGEEELANEVEREFCWVPG 221 (229)
Q Consensus 203 ~g~~~~A~~v~~e~~~~~~ 221 (229)
..+-++|..-|++....-|
T Consensus 477 ~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQP 495 (579)
T ss_pred CcccHHHHHHHHHHHhcCC
Confidence 9999999999988776533
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.27 E-value=14 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
.+|..+-..|...|++++|++.|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666777777777777777776654
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.89 E-value=46 Score=26.09 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-.+.-++...+.|+-|.--+++.+..+.+- ++....--+-++|.+.|...+|.+++++..+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~-----~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEE-----INPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455667788889999988899988876553 67777777999999999999999999987653
No 249
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.86 E-value=46 Score=31.61 Aligned_cols=122 Identities=11% Similarity=0.117 Sum_probs=88.9
Q ss_pred hcCCHHHH-HHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 94 RQGECAVA-VHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 94 ~~g~~~~A-~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
..|++-.| .++|+.++.. .. |+.+...+.| +...|.+|.|..++......=.....+--.+++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~-p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQD-PVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCC-chhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555544 6778777765 44 8888777776 356789999999887764311345678889999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+-+.|....+. .|.++|..+ -.--..|-+|++.-.++.+-+..++.
T Consensus 378 s~a~~~l~~eie---~~ei~~iaa--~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIE---DEEVLTVAA--GSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccC---Chhheeeec--ccHHHHhHHHHHHHHHHHHhccCChh
Confidence 999999988875 355555433 23345688999999998888775543
No 250
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=71.25 E-value=48 Score=32.90 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=68.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 112 YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 112 ~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
+. -|..+|-.|--++.++|+++.+-+.|++-...-.--...|+.+=..|..+|..-.|+.+.++-....-. |+..
T Consensus 319 ~q-nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~----ps~~ 393 (799)
T KOG4162|consen 319 FQ-NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ----PSDI 393 (799)
T ss_pred hc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC----CCcc
Confidence 44 689999999999999999999999999865321334578999999999999999999999765433312 5444
Q ss_pred HHHHHHHHHH--hcCCHHHHHHH
Q 026993 192 VGKVLSKGLR--RFGEEELANEV 212 (229)
Q Consensus 192 Ty~~Li~~~~--~~g~~~~A~~v 212 (229)
+--.++...| +.|.+++|..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldY 416 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDY 416 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHH
Confidence 4444444443 34555555443
No 251
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.97 E-value=49 Score=25.96 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEI------DGGDGRGLSRVVRAVVEAGS-KESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g~pd~~tyn~lI~~~~~~g~-~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
...|.++.-+...+.+.-...+++.+..- |.-|-.+|++++.+..+... --.+..+|+-|++.+.. +..
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~----~t~ 115 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIE----FTP 115 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCC----CCH
Confidence 45788888888888888888887777421 12355689999999988776 56788899999987775 888
Q ss_pred HHHHHHHHHHHhc
Q 026993 191 YVGKVLSKGLRRF 203 (229)
Q Consensus 191 ~Ty~~Li~~~~~~ 203 (229)
.-|..||+++.+-
T Consensus 116 ~dy~~li~~~l~g 128 (145)
T PF13762_consen 116 SDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHcC
Confidence 8899999998764
No 252
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=70.88 E-value=1e+02 Score=30.21 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
...+-+.|+++.|+...+.-.. .+ |..+ .|-+=-..++.+|.+++|...+++-.+-+.+|...=.-=..-..++.+.
T Consensus 378 aqh~D~~g~~~~A~~yId~AId-HT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAID-HT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhc-cC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 4455567888888876665432 33 4432 3444447789999999999999998876566664332334445678999
Q ss_pred HHHHHHHHHHHHcCCC-CCCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHhhhc
Q 026993 168 ESTVRIYGLMKRSGVG-CSWKVDEYVGKVL------SKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~-~~~~Pd~~Ty~~L------i~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
++|.++....-+.|.. + -|..-.-++ -.+|.+.|++.+|.+=|.+..++
T Consensus 456 ~eA~~~~skFTr~~~~~~---~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGFGAV---NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHHHhhhcccchh---hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999988877742 0 122111111 24667778888887766665554
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=75 Score=28.02 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
.-..++...|+..+|..+|+.....-. -+.-.--.|..+|...|++++|..+++.++..-
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 345667788999999999988876522 233345578889999999999999999887653
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=69.32 E-value=37 Score=32.11 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG--DGRGLSRVVR 159 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p--d~~tyn~lI~ 159 (229)
..+-+.|+.++|++.|.+|.+++. .-+..+.-.||.+|...+++.|+..++.+-.+...| -..+||.-+-
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 344578999999999999987643 124457888999999999999999999887543233 3578887553
No 255
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.21 E-value=13 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 026993 122 DLINTLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~ 144 (229)
.+|.||...|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45555555555555555555544
No 256
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.97 E-value=81 Score=27.70 Aligned_cols=112 Identities=9% Similarity=0.104 Sum_probs=76.6
Q ss_pred HHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHhhhC-C-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 99 AVAVHVFSTIQ--REYQQQDLGLLTDLINTLAK-NG-LTGEVDRLIGELEEI-D-GGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 99 ~~A~~vf~~m~--~~~~~pd~~ty~~LI~~~~k-~g-~~~~A~~lf~~M~~~-g-~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.+|+++|+... +..- -|..+-..|+..+.. .+ ...--.++.+-+... | .++..+--++|..++..+++++-++
T Consensus 145 v~aL~L~~~~~~~~~Ii-~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 145 VEALKLYDGLNPDESII-FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHhhccCccccee-eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 35666665321 1122 344445555555555 22 333334555555433 4 7888899999999999999999999
Q ss_pred HHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 173 IYGLMKRS-GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 173 ~f~~M~~~-g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
+.+.-... +.. -|...|...|+.....|+....+++..+
T Consensus 224 fW~~~~~~~~~~----~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPG----NDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCC----CCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88776554 333 6999999999999999999999988763
No 257
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.36 E-value=17 Score=23.96 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 132 LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 132 ~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
.++++.++++.+... +.|-.-.=.+|.||...|+.++|.+..+++..
T Consensus 5 ~~~~~~~~~~~lR~~-RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ-RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555321 22444444677777777777777777766643
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=67.18 E-value=36 Score=27.35 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
...|..+-.-|++.|+.++|++.|.+|.+.... |.. -.+-.+|....-.|+++.+.......+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 368889999999999999999999999886543 332 34456788888899999998888777664
No 259
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.73 E-value=24 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
++.++|..|..+|+. .--..-|..--.-+...|++++|.+|++
T Consensus 81 ~~~~if~~l~~~~IG---~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG---TKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTS---TTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc---HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666665554 2344455555555666666666666654
No 260
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.89 E-value=46 Score=23.79 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=19.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 129 KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
..|+.+.|.++.+.+. +| .-.|...+.++-..|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg---~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK---EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC---CcHHHHHHHHHHHcCchhhh
Confidence 3455555555555555 43 12455555555555554444
No 261
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.59 E-value=25 Score=21.84 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 026993 130 NGLTGEVDRLIGELEEID 147 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g 147 (229)
.|-+.++..++++|.+.|
T Consensus 15 ~GlI~~~~~~l~~l~~~g 32 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAG 32 (48)
T ss_pred cCChhhHHHHHHHHHHcC
Confidence 333444444444444444
No 262
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=64.68 E-value=38 Score=33.30 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH----
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY---- 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~---- 191 (229)
+..+.-.+-.-+-+...+.-|-++|..|-. . -+++......+++++|+.+-+...+- . ||++
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~---ksiVqlHve~~~W~eAFalAe~hPe~--~----~dVy~pya 811 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD-----L---KSLVQLHVETQRWDEAFALAEKHPEF--K----DDVYMPYA 811 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc-----H---HHHhhheeecccchHhHhhhhhCccc--c----ccccchHH
Confidence 444444444556667788889999999853 2 37888899999999999988766542 1 5543
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 192 -------VGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 192 -------Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
-|----++|.++|+..||.++++.+-+
T Consensus 812 qwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 233445788899999999999887754
No 263
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.73 E-value=21 Score=31.78 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=45.1
Q ss_pred HHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 127 LAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
+.|.|+.++|.+-|++-.+-| .-..+.||.-+.. .+.|+.+.|++.-.+++++|+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI 209 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence 568899999999999876665 4457889987754 567899999999999998874
No 264
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.52 E-value=22 Score=26.37 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI 124 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI 124 (229)
+.|+++.|-+++..|..+|+.++.++. .....|.-+|
T Consensus 50 aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 50 AALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 567777777777777777777766654 3333566655
No 265
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=63.36 E-value=23 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI 124 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI 124 (229)
+.|+++.|-+++..|..+|+.++.++. .+..+|..++
T Consensus 47 aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~l 83 (103)
T cd00923 47 AALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHH
Confidence 567788888888888888877765554 4444666655
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=63.30 E-value=98 Score=26.63 Aligned_cols=59 Identities=8% Similarity=0.002 Sum_probs=36.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 159 RAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-|.+.|....|..-|++|.+. ... ..--.-..-.|..+|-..|-.++|.+.-+-++.-
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~-t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPD-TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-ccc-ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456777777777777788775 210 0011123445667777788888887777666554
No 267
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.65 E-value=49 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
|..|+..|-..|+.++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666555544
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=62.34 E-value=54 Score=24.31 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 135 EVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 135 ~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+..+-++.+-... .|+.....+.+.+|-|..++..|+++|+-.+.+ |. +..-.|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~----~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CG----NKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----T-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cc----ChHHHHHHHHHHH
Confidence 4556666666666 788888888888888888888888888776543 22 2222676666543
No 269
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.45 E-value=45 Score=24.59 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-CCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRS--G-VGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~--g-~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-|+.|+.-|-..|+.++|++++.+.... + ..- .+..-...++|+.+.+.|.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~--~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEED--PFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhccccccccc--ccccCchhHHHHHHHhCCh
Confidence 5999999999999999999999998771 1 110 0122233346888888775
No 270
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.19 E-value=16 Score=19.31 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 026993 195 VLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~ 214 (229)
.+-..+...|+.++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555666666665554
No 271
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.15 E-value=37 Score=21.07 Aligned_cols=35 Identities=6% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
-.-+.|..+++..++++|.+.|+. -+.-.|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~----is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFR----ISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcc----cCHHHHHHHHH
Confidence 346788889999999999999997 56666665554
No 272
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.14 E-value=68 Score=24.06 Aligned_cols=86 Identities=12% Similarity=-0.039 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
.-++|..|.+++...-. -.-+.--+-+..+-+.|++++| +..-. .. .||...|-+|=. .|.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~--~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQ--CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHT--TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcc--cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45678888888765311 1122222334568889999999 22222 23 799999987755 68999999999999
Q ss_pred HHHHcCCCCCCCCCHHHHH
Q 026993 176 LMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~ 194 (229)
++..+|- |-...|.
T Consensus 94 rla~~g~-----~~~q~Fa 107 (116)
T PF09477_consen 94 RLASSGS-----PELQAFA 107 (116)
T ss_dssp HHCT-SS-----HHHHHHH
T ss_pred HHHhCCC-----HHHHHHH
Confidence 9988885 6666664
No 273
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.77 E-value=32 Score=23.06 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
|....++-|+..+++..-++++...+++..++|.-+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5566777777777777777888777777777774466666666666665
No 274
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.38 E-value=59 Score=23.28 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=44.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 136 VDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 136 A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
+.++++.+.++|.-+..-.+.+..+=-..|+.+.|.++..... .|-. -|+..++++...|.-+.|.+
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--------aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEG--------WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--------HHHHHHHHHHHcCchhhhhc
Confidence 4566666666662233333444443345678888888888887 7765 67788888888888777765
No 275
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.20 E-value=51 Score=28.06 Aligned_cols=123 Identities=14% Similarity=0.021 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---HhhhCCCCCHHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIG---ELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~---~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
..+.+|.+.+.+.+|+..-..-.+.-. .|.-+=..++.-||-.|+.+.|..=++ +|.-...+-..+|..+|.+=.-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~ 84 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAA 84 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 457788999999999987655444322 355666778999999999999965444 4433224455678888773211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhh
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL-RRFGEEELANEVEREFCW 218 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~-~~~g~~~~A~~v~~e~~~ 218 (229)
. -++|.-=..=|+.. -|...=...|..++ ++.+...+|.+-++|...
T Consensus 85 R------~evfag~~~Pgflg--~p~p~wva~L~aala~h~dg~gea~~alreqal 132 (273)
T COG4455 85 R------NEVFAGGAVPGFLG--GPSPEWVAALLAALALHSDGAGEARTALREQAL 132 (273)
T ss_pred H------HHHhccCCCCCCcC--CCCHHHHHHHHHHHhcccCCcchHHHHHHHHHH
Confidence 1 12232111112210 02333334444444 455556677776665544
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.99 E-value=21 Score=33.18 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEI-----------------D-GGDGRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~-----------------g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
--++.++..+-+.|..+.|..+-.+-..+ . ..+...|..|=....+.|+++-|.+.|.+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34777787777777777777665432211 1 12445666666666666666666666554
No 277
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.95 E-value=6.2 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=25.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
-+.|.-.+|..+|.+|.++|-+ ||. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~p----Pdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNP----PDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCC----Ccc--HHHHHHHh
Confidence 3456777999999999999998 985 56666543
No 278
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=59.57 E-value=68 Score=23.58 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 134 GEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 134 ~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
-++.+-++.+.... .|+....++-++||-|..++..|+++|+-.+.+ |. .+.-.|..+++-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~----~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CG----AHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cc----CchhhHHHHHHHH
Confidence 35566666666666 788888888888888888888898888766532 22 3445677666543
No 279
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.42 E-value=21 Score=31.41 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=28.8
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 149 GDG-RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 149 pd~-~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
||. .=||.-|..-.+.|++++|+.+.+|-++.|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 454 35788899999999999999999999888885
No 280
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=59.16 E-value=39 Score=25.50 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVR 159 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~ 159 (229)
++|+-+-+|.-.++|.++.+-|.++|.-+.-.=+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 57888999999999999999999998444443344433
No 281
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=59.14 E-value=41 Score=34.05 Aligned_cols=95 Identities=16% Similarity=0.056 Sum_probs=54.7
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-------CCCC
Q 026993 116 DLGLLTDLIN--TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR-SG-------VGCS 185 (229)
Q Consensus 116 d~~ty~~LI~--~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-~g-------~~~~ 185 (229)
|..|=-++++ .|.--|.+|+|.+-..-+++ ...|..|-+.|.+-.++|-|.=++..|.. .| ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-- 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-- 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh--
Confidence 4455555554 36666777777777666653 35677777777777777777777777743 11 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 186 WKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 186 ~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+||.---.+-+ --...|.+|+|..+++..+++
T Consensus 798 -~~~e~eakvAv-LAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 798 -NGEEDEAKVAV-LAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred -CCcchhhHHHH-HHHHHhhHHHHHHHHHHHHHH
Confidence 13221111111 113566777777777766664
No 282
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.64 E-value=1.3e+02 Score=27.01 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHH-HHHHHHHc
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSR-VVRAVVEA 164 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~-lI~~~~~~ 164 (229)
.+++-.+.+..++..|+++...-.+.-. .+..--+.|=++|-+..++.+|-..++++... .|-..-|-- --..+.++
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHh
Confidence 3444444555555555544433322111 13333444445555555555555555555332 222211111 01233455
Q ss_pred CCHHHHHHHHHHHH
Q 026993 165 GSKESTVRIYGLMK 178 (229)
Q Consensus 165 g~~~~A~~~f~~M~ 178 (229)
+.+.+|+++...|.
T Consensus 92 ~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 92 CIYADALRVAFLLL 105 (459)
T ss_pred cccHHHHHHHHHhc
Confidence 55555555555443
No 283
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.32 E-value=1.3e+02 Score=26.15 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=94.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQDL-GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd~-~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-+....|+.+.|....+.++.++. .+-+ ..+..++. -.|+.++|.++++.+.+.+.-|.++|--=|...-..|+.
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE---a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE---ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH---HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 344567889999999999987742 1222 23444333 367899999999999887644678887777777777888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-+|++-..+-.+. +. -|.-.|--|-.-|...|+++.|.--++|+--..|
T Consensus 137 l~aIk~ln~YL~~-F~----~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FM----NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHHHHHH-hc----CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 8998888877764 33 6889999999999999999999999998876644
No 284
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=57.10 E-value=40 Score=25.99 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
|...|.++...|. |.+|.+..+.||. +...|+++.|+++..-.++.|..
T Consensus 32 Y~p~v~g~L~~g~--------------g~qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 32 YLPWVEGVLASGS--------------GAQDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHHHHHHHHHcCC--------------CCcCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCCC
Confidence 6677777665433 2456655555554 67888888888888888888876
No 285
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.74 E-value=64 Score=24.55 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
+++.++|..|...|+. .--..-|...-.-+...|++.+|.+||+
T Consensus 80 ~dp~~if~~L~~~~IG---~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIG---TKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcc---hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4466677777777765 2344455666666677777777777765
No 286
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.37 E-value=1e+02 Score=24.20 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGL-TGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.|-.+|.+++.++++... ---+..+|+-|++.+ +.+..-|-.||.++.+. ...+.+
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g-~~~~~~ 134 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG-YFHDSL 134 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCcch
Confidence 566789999999988777 445788999999988 99999999999987664 444443
No 287
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.30 E-value=48 Score=23.54 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
++|+.+.+|.-.++|.++++-|.++|.-+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 678899999999999999999999883343
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.06 E-value=24 Score=19.25 Aligned_cols=28 Identities=21% Similarity=-0.003 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|..+-..+...|+.++|.+.|++.-++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455556666677777777777665544
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.99 E-value=2.2e+02 Score=27.97 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=61.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
..+.|+++.|.++-.+. -+..-|..|=++..+.|++..|.+-|..-.. |..|+-.+...|+-+--.
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHH
Confidence 34555565555544333 2334477777777777777777777765432 456666666666655444
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
.+=..-++.|. +.. -.-++-..|+++++.+++.+-++++
T Consensus 713 ~la~~~~~~g~------~N~----AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNL----AFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHHhhcc------cch----HHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 44444455553 222 2334556788888888888776654
No 290
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.65 E-value=48 Score=27.59 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCC
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKR--------SGVGCSW--KVDEYVGKVLSKGLRRFGEEELANEVEREFCWV-PGGS 223 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~--------~g~~~~~--~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~-~~~~ 223 (229)
-++|..|-+.-++.++..+.+.|.+ .|+.+++ .+--...|+-..-|.+.|.+|-|..+++|-.++ ..+.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLreseWii~t~l 215 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESEWIISTPL 215 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccceeecCCC
Confidence 3677788888899999999998876 2332111 134466778888899999999999999999887 5555
Q ss_pred CC
Q 026993 224 LE 225 (229)
Q Consensus 224 ~~ 225 (229)
||
T Consensus 216 WP 217 (233)
T PF14669_consen 216 WP 217 (233)
T ss_pred CC
Confidence 55
No 291
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.15 E-value=1.7e+02 Score=26.61 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHhhhCCCCCHH-HHH---HHHHHHHH---cCCHH
Q 026993 99 AVAVHVFSTIQREYQQQDLGLLTDL---INTLAKNGLTGEVDRLIGELEEIDGGDGR-GLS---RVVRAVVE---AGSKE 168 (229)
Q Consensus 99 ~~A~~vf~~m~~~~~~pd~~ty~~L---I~~~~k~g~~~~A~~lf~~M~~~g~pd~~-tyn---~lI~~~~~---~g~~~ 168 (229)
.+..+....|+++...|++.+-..+ +-.|-...+++.-.+|.+.|..--.+++. +-+ -..-|+-+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 3344445566655211333332333 33577788888889999999764211111 111 12223445 88999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+|.+++.......-. ++.-||..+-..|
T Consensus 200 ~Al~il~~~l~~~~~----~~~d~~gL~GRIy 227 (374)
T PF13281_consen 200 KALQILLPVLESDEN----PDPDTLGLLGRIY 227 (374)
T ss_pred HHHHHHHHHHhccCC----CChHHHHHHHHHH
Confidence 999999886554433 7777888776665
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.84 E-value=34 Score=18.42 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=10.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 026993 157 VVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
+=..|.+.|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344445555555555555444
No 293
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=53.34 E-value=1.9e+02 Score=26.87 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGL--LTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~t--y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.|+.+.|.+-|+.|... |.... ...|.-.--+.|.-+-|...-+.--+. -|. .-.|.+.+...|..|++|.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHH
Confidence 57788888888877542 22111 111222223445555555554443322 233 356677777777777777777
Q ss_pred HHHHHHHH
Q 026993 172 RIYGLMKR 179 (229)
Q Consensus 172 ~~f~~M~~ 179 (229)
++.+.-++
T Consensus 209 kLvd~~~~ 216 (531)
T COG3898 209 KLVDAQRA 216 (531)
T ss_pred HHHHHHHH
Confidence 77765443
No 294
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=53.19 E-value=2.5e+02 Score=28.12 Aligned_cols=122 Identities=13% Similarity=0.063 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHc
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEA 164 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~ 164 (229)
+..-..+.+.+..++|..-..+..+.+. -....|.-.=..+-..|..+||.+.|..-..- .|| +.+-+++=..+.+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-dP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-DPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHh
Confidence 3344445667777777655545544332 33455555545666778888888888765433 355 45778888888889
Q ss_pred CCHHHHHH--HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 165 GSKESTVR--IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 165 g~~~~A~~--~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
|+..-|.. +..+|.+.+- -|--.|=-|-..+-+.|+.+.|.+-|.
T Consensus 732 G~~~la~~~~~L~dalr~dp-----~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDP-----LNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred CCcchHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 97777777 8888988775 355566668888899999999988887
No 295
>PRK11906 transcriptional regulator; Provisional
Probab=52.62 E-value=1.8e+02 Score=27.29 Aligned_cols=83 Identities=13% Similarity=0.014 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 132 LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 132 ~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
...+|.++-+.-.+.+.-|...-..+=.+....|+++.|..+|++-....-. .++.+.|..++..+ .|+.++|.+
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~--~G~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFH--NEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHH--cCCHHHHHH
Confidence 3445555555555544334444444444345555577777777766654322 14555666665555 367777777
Q ss_pred HHHHhhhc
Q 026993 212 VEREFCWV 219 (229)
Q Consensus 212 v~~e~~~~ 219 (229)
.+++..+.
T Consensus 394 ~i~~alrL 401 (458)
T PRK11906 394 CIDKSLQL 401 (458)
T ss_pred HHHHHhcc
Confidence 76664443
No 296
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=52.53 E-value=1.9e+02 Score=26.51 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=62.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCC----H------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGD----G------------RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV 188 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd----~------------~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P 188 (229)
+.+.|.|.+++|..=|+...... |+ . ...-..+..+...|+...|.+....+.+--. -
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-----W 187 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-----W 187 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-----c
Confidence 35778899999988888876543 21 1 1122344556677888888888888887543 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 189 DEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 189 d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
|..-|..=-++|...|++..|..=++..-+....+.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT 223 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT 223 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch
Confidence 777777777888888887777655554444444433
No 297
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=52.52 E-value=47 Score=23.00 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.+.++|.+|.+.|.- .||...+ |...+...|+.|.+.+|.+
T Consensus 38 ~~~dlf~~Le~~~~i---~~~nl~~--L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 38 SGLDLFEELEKRGLI---SPDNLSL--LKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp SHHHHHHHHHHTTSS---STTBHHH--HHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHcCCC---CCccHHH--HHHHHHHhCHHHHHHHHHH
Confidence 467777777777763 2555544 7777777777777777654
No 298
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.85 E-value=99 Score=25.48 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 026993 126 TLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~ 144 (229)
.|.++|.+++|.++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444445555544444443
No 299
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.22 E-value=90 Score=27.75 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
+++..-..|..+|.+.+|.++......-.- .++..|-.|++.|...|+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-----L~e~~nk~lm~~la~~gD 328 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-----LSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-----hhhHHHHHHHHHHHHhcc
Confidence 344444555555566666555554443321 455555555555555555
No 300
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.06 E-value=62 Score=27.58 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHcCCCCCCCCCHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGL---MKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~---M~~~g~~~~~~Pd~~Ty~~ 195 (229)
|-+..|+.+.+.+++.+|..+..+=.+...-|.-+=..++.-||-.|++++|..-.+- |..+ .. +-..+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~-~t----~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ-DT----VGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc-cc----hHHHHHHH
Confidence 4567788999999999999988775544333567888999999999999999865543 3322 22 66788888
Q ss_pred HHHHH
Q 026993 196 LSKGL 200 (229)
Q Consensus 196 Li~~~ 200 (229)
+|.+-
T Consensus 78 lir~e 82 (273)
T COG4455 78 LIRCE 82 (273)
T ss_pred HHHHH
Confidence 88754
No 301
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=50.00 E-value=1e+02 Score=22.79 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCC
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQ----DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~p----d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~ 166 (229)
+...|+.+.|...|..... .. | ....+......+...++.++|...+.+....... +...+..+-..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LD-PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 4455555555555555422 21 2 1222333333344555555555555555433211 24445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 026993 167 KESTVRIYGLMKR 179 (229)
Q Consensus 167 ~~~A~~~f~~M~~ 179 (229)
.+.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
No 302
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.37 E-value=34 Score=21.01 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 124 INTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
=.+|.+.|+.+.|.+++++....|
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Confidence 346777777777777777766544
No 303
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.16 E-value=2e+02 Score=25.97 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH---cCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCHH-HHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE---YQQQDLGLLTD--LINTLAKNGLTGEVDRLIGELEE-----ID-GGDGR-GLSR 156 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~---~~~pd~~ty~~--LI~~~~k~g~~~~A~~lf~~M~~-----~g-~pd~~-tyn~ 156 (229)
+....+.++.++|++..+.+.++ ++.||.+.|-. +...+...|++.++++++++.++ .| .|+++ .|+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 33444556899999999999876 33477776654 45556678999999999998877 45 55553 5666
Q ss_pred HHHHHHHc
Q 026993 157 VVRAVVEA 164 (229)
Q Consensus 157 lI~~~~~~ 164 (229)
+=+-|.+.
T Consensus 162 lssqYyk~ 169 (380)
T KOG2908|consen 162 LSSQYYKK 169 (380)
T ss_pred HHHHHHHH
Confidence 66666553
No 304
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.05 E-value=34 Score=16.89 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
+|..+-..|...|++++|...|.+-.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 305
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=48.19 E-value=1.7e+02 Score=30.34 Aligned_cols=91 Identities=7% Similarity=-0.109 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI--NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI--~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+.+.+..+|++|..+.-..-+.-. .-...+|-+- -.|-+.++..+|..-|..-..-..-|.-.|..+..+|-.+|
T Consensus 532 ~adtyae~~~we~a~~I~l~~~qka~-a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 532 SADTYAEESTWEEAFEICLRAAQKAP-AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred HHHHhhccccHHHHHHHHHHHhhhch-HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 45566666677777666221111100 0011111111 12445566666666665544332225667777888888888
Q ss_pred CHHHHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKR 179 (229)
Q Consensus 166 ~~~~A~~~f~~M~~ 179 (229)
+...|..+|.+...
T Consensus 611 ry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 611 RYSHALKVFTKASL 624 (1238)
T ss_pred ceehHHHhhhhhHh
Confidence 88888888866654
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.18 E-value=33 Score=31.14 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=70.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..|.++|.+++|+.-|..-..-+. .|.++|..=-.+|.|.+++..|+.=-+.-.. .=-.-|.+|.+.|.-.+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-------Ld~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIA-------LDKLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHH-------hhHHHHHHHHHHHHHHH
Confidence 567899999999988865433232 3888888888899999998877654444332 11245789999888888
Q ss_pred HHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 170 TVRIYGLMKRSGV-GCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 170 A~~~f~~M~~~g~-~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
++....+-++.-- ..-+||+.. -|=+.+.+...+.++.-+
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~---ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNI---ELKKSLARINSLRERKIA 217 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccH---HHHHHHHHhcchHhhhHH
Confidence 8877766654210 001247732 344455555554444433
No 307
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.64 E-value=1.7e+02 Score=24.60 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMK----RSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~----~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
-|=.-|.+.|++++|.++|+.+. +.|.. .+...+...|..+..+.|+.+....+--||.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~---~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWW---SLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44566889999999999998874 35664 4677777888999999999998888777664
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.39 E-value=1.6e+02 Score=24.38 Aligned_cols=71 Identities=13% Similarity=0.011 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 100 VAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE---ID-GGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 100 ~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~---~g-~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.|++.|-.+...-.--|......|-..|. ..+.++|..++.+..+ .+ .+|...+.+|.+.|-+.|+.+.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46666666644311024555556665565 6788999998887553 34 788999999999999999999885
No 309
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.93 E-value=1.2e+02 Score=27.73 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=52.1
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHHHHhcC
Q 026993 129 KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE----YVGKVLSKGLRRFG 204 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~Li~~~~~~g 204 (229)
-+|+..+|...++++.+.-.-|...++--=++|.-.|+.+.-...+++..-. |.||. ++-.+.-=|+...|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-----wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-----WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-----cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3566667777777766533335667777777777777777777777666543 11333 33344444566677
Q ss_pred CHHHHHHHHHHhhhc
Q 026993 205 EEELANEVEREFCWV 219 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~ 219 (229)
-+++|++.-++...+
T Consensus 190 ~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 190 IYDDAEKQADRALQI 204 (491)
T ss_pred cchhHHHHHHhhccC
Confidence 777777766655444
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=46.92 E-value=23 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVD 137 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~ 137 (229)
|...|+.|=..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455555556666666666554
No 311
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.51 E-value=1.1e+02 Score=27.71 Aligned_cols=57 Identities=4% Similarity=-0.005 Sum_probs=33.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS--GVGCSWKVDEYVG--KVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~Pd~~Ty--~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
...-+.++.++|++..+++++. -+. +||.+.| +.+.+.+...|+..++++++.|.+.
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~---e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYK---EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3334444666777777666543 222 3666666 3444555566677777777776665
No 312
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=46.10 E-value=41 Score=31.82 Aligned_cols=37 Identities=19% Similarity=0.009 Sum_probs=32.1
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 188 VDEYVG-KVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 188 Pd~~Ty-~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
|+.+|+ +.+++-+-+.|..+.|++++..+...+|.++
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl 494 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSL 494 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccH
Confidence 788887 7788888889999999999999999888876
No 313
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.99 E-value=80 Score=21.10 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
|+...+|.|+..+++..-.++++...++....|. -+.-+|---++.+++.-
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-----I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-----IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999997 57777777777777643
No 314
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.29 E-value=64 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=6.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQ 109 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~ 109 (229)
.+.+-..|+..+....
T Consensus 18 ~~~~~~~Al~~W~~aL 33 (80)
T PF10579_consen 18 HQNETQQALQKWRKAL 33 (80)
T ss_pred ccchHHHHHHHHHHHH
Confidence 3444444444444443
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=45.22 E-value=1.2e+02 Score=22.34 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHH-HHHHcCCH
Q 026993 92 LIRQGECAVAVHVFSTIQR--EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVR-AVVEAGSK 167 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~--~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~-~~~~~g~~ 167 (229)
+...+....+...+..... ... .....|..+-..+...+..++|.+.+....... .+ ...+...-. .+...|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 146 (291)
T COG0457 69 LLKLGRLEEALELLEKALELELLP-NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDY 146 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCH
Confidence 3344444444444444332 111 233344444444455555555555555544332 11 111111222 45555555
Q ss_pred HHHHHHHHHH
Q 026993 168 ESTVRIYGLM 177 (229)
Q Consensus 168 ~~A~~~f~~M 177 (229)
+.|...|.+.
T Consensus 147 ~~a~~~~~~~ 156 (291)
T COG0457 147 EEALELYEKA 156 (291)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 316
>cd08336 DED_FADD Death Effector Domain found in Fas-Associated via Death Domain. Death Effector Domain (DED) found in Fas-Associated via Death Domain (FADD). DEDs comprise a subfamily of the Death Domain (DD) superfamily. FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor and its DED recruits the initiator caspases 8 and 10 to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily incl
Probab=45.14 E-value=61 Score=22.62 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
+...+.++|.+|.+.|.- .||...+ |-.-+...|+.|.+.+|
T Consensus 37 ~~~s~l~lf~~Le~~~~i---~~~nl~~--L~~lL~~i~R~DL~~~i 78 (82)
T cd08336 37 KVQSGLQLFSALMERNLI---SPENTAF--LRELLQSIKRDDLIQKL 78 (82)
T ss_pred ccCCHHHHHHHHHHcCCC---CcchHHH--HHHHHHHcCHHHHHHHH
Confidence 455778888888888764 2666555 66777777877777655
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=44.21 E-value=1.1e+02 Score=31.15 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
..|+++.|+.+++.-+. |-+++...|-.|++++|-++-++-. |.-..=-|-+.|-..|++.+|+.+
T Consensus 924 S~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35677777777655543 5567777788888888888877654 444444566777777888888777
Q ss_pred HHHH
Q 026993 174 YGLM 177 (229)
Q Consensus 174 f~~M 177 (229)
|.+-
T Consensus 990 fTrA 993 (1416)
T KOG3617|consen 990 FTRA 993 (1416)
T ss_pred HHHH
Confidence 7654
No 318
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.94 E-value=1.8e+02 Score=24.03 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
..+--|.+.|.+++|.+++++..+. ||..+...-+-...+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d-------~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD-------PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC-------CCchhHHHHHHHHHHccc
Confidence 3456789999999999999988752 666666665555555443
No 319
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.39 E-value=85 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 135 EVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 135 ~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
++.++|..|..+| .--..-|..-=.-+-+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888888888777 33345666666667778888888888753
No 320
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=42.13 E-value=1e+02 Score=30.46 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=56.6
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-----------HHHHHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-----------RGLSRVVRAV 161 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-----------~tyn~lI~~~ 161 (229)
.+...+..|-++|..|-. -.+++......++..||..+-+..++- .||+ .-|---=.+|
T Consensus 758 k~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~-~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF-KDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc-cccccchHHHHhhhhhhHHHHHHHH
Confidence 344566677777777632 345777888889999999988877653 3444 2344556789
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 026993 162 VEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g 181 (229)
-|+|+..+|+++++++....
T Consensus 828 hkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHhcchHHHHHHHHHhhhhh
Confidence 99999999999999886543
No 321
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.10 E-value=2.7e+02 Score=25.41 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHH----HHHHcCCHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVR----AVVEAGSKESTV 171 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~----~~~~~g~~~~A~ 171 (229)
|+..+|-..++.+.+.+. .|...++-.=+++.-+|+.+.-...|+++.-.=.+|...|.-+=. |+-..|-+++|.
T Consensus 117 g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444455555555555455 566666666666666666666666666654321234333322211 222455555555
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
+.-++-.+-+ +-|...--++-..+.-.|+..+|.+..
T Consensus 196 k~A~ralqiN-----~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 196 KQADRALQIN-----RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHhhccCC-----CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 4433332221 134455555555555555555555443
No 322
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.09 E-value=83 Score=26.34 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 026993 123 LINTLAKNGLTGEVDRLIGEL 143 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M 143 (229)
+|..+.+.|+.+.|..++.-+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444445555554444444
No 323
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.93 E-value=75 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTI 108 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m 108 (229)
+..+|.++...|+.++|..-+.++
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 345666777777777776666554
No 324
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=41.66 E-value=67 Score=25.92 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 026993 151 GRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A 170 (229)
.-.++.+...|+..|....+
T Consensus 116 ~gl~~Vl~qrY~~RgkSk~~ 135 (176)
T PF06576_consen 116 PGLINVLRQRYCGRGKSKRK 135 (176)
T ss_pred cchHHHHHHHHHcccccHHH
Confidence 34555666666665544433
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=41.54 E-value=64 Score=23.99 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
+..+.++|++.+|+.+-+.+ +. ||+..|-+|- =.|.|.-+.+..=+..|...|.|-...|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~---~~-pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL---CY-PDLEPWLALC--EWRLGLGSALESRLNRLAASGDPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCC---CC-chHHHHHHHH--HHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45677899999999776555 45 9999998874 457888888888888898887666655543
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.90 E-value=71 Score=22.45 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 026993 129 KNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
...+-++|...|....++- .|+. .+...|+.+|+..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888766554 3343 4788899999999999888764
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.48 E-value=4.1e+02 Score=27.02 Aligned_cols=47 Identities=11% Similarity=0.201 Sum_probs=20.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
+|.-|..+.+..+-...++.+.+.|+. +.---+.|+++|.+.++.+.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-----~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-----NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-----cchhHHHHHHHHHHhcchHH
Confidence 344444444444444444444444442 22222334444444444433
No 328
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.47 E-value=1.8e+02 Score=27.08 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 125 NTLAKNGLTGEVDRLIGELEEID----GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g----~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+...|.|.+.+|.+.+.+-..-. .|+...|-..=....+.|+.++|+.--++-.+- -+.+...-+..|-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------D~syikall~ra~ 329 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------DSSYIKALLRRAN 329 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------CHHHHHHHHHHHH
Q ss_pred Hhc--CCHHHHHHHHHHhhhcCCC
Q 026993 201 RRF--GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 201 ~~~--g~~~~A~~v~~e~~~~~~~ 222 (229)
|.. +++++|.+-++....-.+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
No 329
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.46 E-value=2.8e+02 Score=26.28 Aligned_cols=34 Identities=9% Similarity=0.250 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
+...+..++.+....+....|+.++.+|.+.|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d 280 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQD 280 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Confidence 4445566666655555567899999999999975
No 330
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=40.12 E-value=67 Score=21.52 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-.|+.+.+.+++++..+.|.. |..+....+..++-+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~----~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYP----PEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSS----TTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHH
Confidence 456777788888877777776 777777777777766553
No 331
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.80 E-value=1.3e+02 Score=21.07 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
++.|..-.-...+..-+.+.|.++.+.++.+| ..+|.++.+++-..|+.+-|
T Consensus 29 ~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG---~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 29 GVFTPDMIEEIQAAGSRRDQARQLLIDLETRG---KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCchHHH
Confidence 33444444444445566777888888877765 44677777777776665544
No 332
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=39.76 E-value=2.5e+02 Score=29.26 Aligned_cols=117 Identities=15% Similarity=0.010 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH--HHHcCCHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA--VVEAGSKESTVRIY 174 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~--~~~~g~~~~A~~~f 174 (229)
+...|.+-|+.-.+ ....|...+..+.+.|++....++|..+.-.--++..--...||-+-.| |...+++.+|+.-|
T Consensus 507 Dm~RA~kCf~KAFe-LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFE-LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhc-CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 44455555544432 2213566788899999999999999998433333221123345544444 56788999999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..-.+... -|.-.|..|-.+|.+.|+..-|.++|...-..
T Consensus 586 QsALR~dP-----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 586 QSALRTDP-----KDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHhcCCc-----hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 88776553 48889999999999999999999999655443
No 333
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=39.66 E-value=3e+02 Score=25.22 Aligned_cols=126 Identities=16% Similarity=0.097 Sum_probs=86.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHH-cC-CCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQRE-YQ-QQDLGLLT------------DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~-~~-~pd~~ty~------------~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
.+.++|+++.|..=|+.+.+. -. ..+...+. ..+..+.-.|+...|......+.+-..=|...|-.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 367899999999999988653 11 01111122 23345667889999999999888754236667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
=-.+|...|.+..|+.=++.-.+..- -+.-++=-+-.-+-..|+.+.+....+|+-+..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-----DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-----DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 77889999999999874433332222 3444444466677788999999999999887654
No 334
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=38.80 E-value=1.1e+02 Score=21.42 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
+.+++++..-.+... .+.-|...|+.++.+.|+-+.|++|.
T Consensus 43 eq~~~mL~~W~~~~~-----~~~atv~~L~~AL~~~gr~dlae~l~ 83 (86)
T cd08779 43 EQIFDMLFSWAQRQA-----GDPDAVGKLVTALEESGRQDLADEVR 83 (86)
T ss_pred HHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHcCHHHHHHHHH
Confidence 445555544443322 23346677777777777777777664
No 335
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.65 E-value=2.7e+02 Score=24.29 Aligned_cols=119 Identities=12% Similarity=-0.009 Sum_probs=78.6
Q ss_pred HhcCCHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCH-HHHHHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQ-----QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GGDG-RGLSRVVRAV 161 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~-----~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~pd~-~tyn~lI~~~ 161 (229)
...-++++|++++..-..-+. +--.-.|..+=..|.+..+++||-..|.+-..- . -++. ..|-+.|-.|
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 345578889988877543211 012345777777888888999887766543211 1 2232 3466667777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWK-VDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~-Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
....++..|..+|++--..+-.+ . -|..+..-||.+| ..|+.|++.+|..
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 78889999999998854432111 1 3678888899998 5799999888763
No 336
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=38.40 E-value=1.1e+02 Score=20.92 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
..+.+.+++..-.... ++..|...|+.++.+.|+.+.|+.+
T Consensus 45 ~~~~~~~lL~~W~~~~------g~~at~~~L~~aL~~~~~~d~a~~i 85 (88)
T smart00005 45 LAEQSVQLLRLWEQRE------GKNATLGTLLEALRKMGRDDAVELL 85 (88)
T ss_pred HHHHHHHHHHHHHHcc------chhhHHHHHHHHHHHcChHHHHHHH
Confidence 3456666666555443 3346777777777777777776655
No 337
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=38.33 E-value=1.5e+02 Score=23.25 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
+++..|+++.|.+.|.+-..--.-+...||.=-.++--.|+.++|++=+++-.+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
No 338
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.46 E-value=1.5e+02 Score=21.00 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 129 KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..-+.+.+.++++.++.+| ..+|.++..++-..|...-
T Consensus 46 ~~t~~~k~~~Lld~L~~RG---~~AF~~F~~aL~~~~~~~L 83 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRG---PRAFSAFCEALRETSQEHL 83 (90)
T ss_pred CCCcHHHHHHHHHHHHHhC---hhHHHHHHHHHHhcChHHH
Confidence 4456677888888888775 3477777777765554433
No 339
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.35 E-value=61 Score=22.73 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 026993 191 YVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 191 ~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
.|...|+.++.+.|.-+.|+++|
T Consensus 64 AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 64 ATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred ccHHHHHHHHHHcCcHHHHHhhC
Confidence 46666777777776666666654
No 340
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=36.97 E-value=88 Score=20.85 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
.+.+.+++....... ++..|...|++++.+.|+.+.|+++
T Consensus 38 ~~~~~~mL~~W~~~~------~~~at~~~L~~aL~~~~~~~~a~~~ 77 (79)
T cd01670 38 REQAYQLLLKWEERE------GDNATVGNLIEALREIGRRDDAAKL 77 (79)
T ss_pred HHHHHHHHHHHHhcc------CcCcHHHHHHHHHHHcCHHHHHHHh
Confidence 355555555554432 3345666666666666665555443
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.95 E-value=1.8e+02 Score=25.90 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHH----HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 118 GLLTDLI----NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 118 ~ty~~LI----~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
.+|..++ ..|.++|.+.+|..+......-+..+...|-.||..+...|+--.|..-|++|.+
T Consensus 276 ~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 276 QLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455555 5788999999999999888766566788999999999999999999999988854
No 342
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.85 E-value=1.8e+02 Score=27.45 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh
Q 026993 123 LINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
|+.-|--.|.+.||.+...++..--....+.+-++|-+.-+.|+-..-+.++++--.+|. +|-+-|-+||.+
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl--------IT~nQMtkGf~R 586 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL--------ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc--------eeHHHhhhhhhh
Confidence 444566667777777776665321122456777777777777776666666665555554 466667777755
Q ss_pred c
Q 026993 203 F 203 (229)
Q Consensus 203 ~ 203 (229)
.
T Consensus 587 V 587 (645)
T KOG0403|consen 587 V 587 (645)
T ss_pred h
Confidence 4
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.79 E-value=4.7e+02 Score=27.69 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=50.9
Q ss_pred cCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCC
Q 026993 112 YQQQDLGLLTDLINTLA----KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWK 187 (229)
Q Consensus 112 ~~~pd~~ty~~LI~~~~----k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~ 187 (229)
++ ||...|..+..+|+ ..++.++|--+|+..-+ ----+.+|-.+|++++|+.+-.+|...
T Consensus 931 y~-~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~------- 994 (1265)
T KOG1920|consen 931 YK-PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG------- 994 (1265)
T ss_pred ec-cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC-------
Confidence 45 77777766664443 35666666655554321 112356667777777777776666431
Q ss_pred CCHHH--HHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 188 VDEYV--GKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 188 Pd~~T--y~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
-|... --.|+.-+...|+.-+|-++..|.
T Consensus 995 ~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 995 KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 23333 244666666666666666666554
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=36.65 E-value=3.2e+02 Score=25.09 Aligned_cols=52 Identities=12% Similarity=-0.148 Sum_probs=33.8
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
-|.|.|+++||...+..-..- .| |.|+|..=-.+|.+..++..|..=-..-+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 466777777777777653322 34 77777777778888877776655444433
No 345
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=36.52 E-value=51 Score=22.65 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
+...+.++|.+|.+.|.- .||.. ..|-..+-..|+.|.+.++
T Consensus 35 ~~~s~l~lf~~Le~~~~l---~~~nl--~~L~~lL~~i~R~DL~~~i 76 (77)
T cd00045 35 KIKTPFDLFLVLERQGKL---GEDNL--SYLEELLRSIGRNDLLKKV 76 (77)
T ss_pred ccCCHHHHHHHHHHcCCC---CCchH--HHHHHHHHHcCHHHHHHHh
Confidence 455678888888888864 26544 3477777777888777654
No 346
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.39 E-value=2.1e+02 Score=28.49 Aligned_cols=94 Identities=10% Similarity=0.171 Sum_probs=61.0
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHH------HHHHHHHHhhhCCCCCHHH
Q 026993 82 KHDLLAALRELIRQGECAVAVHVFSTIQREYQ--QQDLGLLTDLINTLAKNGLTG------EVDRLIGELEEIDGGDGRG 153 (229)
Q Consensus 82 ~~d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~--~pd~~ty~~LI~~~~k~g~~~------~A~~lf~~M~~~g~pd~~t 153 (229)
+.|..+++++|...|++..+.++++....--+ +.=+-.||.-|....++|.++ .|.++++.-.- .-|..|
T Consensus 28 ~~~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l--n~d~~t 105 (1117)
T COG5108 28 KSGTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL--NGDSLT 105 (1117)
T ss_pred ccchHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc--CCcchH
Confidence 45667899999999999999988877653211 122456888888889999654 34444444333 347889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
|..|+.+-..--+-.-..-+..+.
T Consensus 106 ~all~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 106 YALLCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHHHHHhhcChHhHHhccHHHHHH
Confidence 999988766533333333344333
No 347
>smart00031 DED Death effector domain.
Probab=36.30 E-value=55 Score=22.56 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
...+.++|.+|.+.|.- .||.. ..|...+...|+.|....++
T Consensus 37 ~~~~ldlf~~Le~~~~l---~~~nl--~~L~elL~~i~R~DLl~~i~ 78 (79)
T smart00031 37 IKTFLDLFSALEEQGLL---SEDNL--SLLAELLYRLRRLDLLRRLF 78 (79)
T ss_pred cCCHHHHHHHHHHcCCC---CCccH--HHHHHHHHHcCHHHHHHHhc
Confidence 46778888888887763 14433 34777777788887776654
No 348
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.27 E-value=1.5e+02 Score=20.75 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=44.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 026993 136 VDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELAN 210 (229)
Q Consensus 136 A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~ 210 (229)
+..+++.+.++| +.|..-.-.--+..-+.++|.++.+.....|- ..|.+..+++-..|....|.
T Consensus 18 ~~~v~~~L~~~~---Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~--------~AF~~F~~aL~~~~~~~LA~ 81 (84)
T cd08326 18 PKYLWDHLLSRG---VFTPDMIEEIQAAGSRRDQARQLLIDLETRGK--------QAFPAFLSALRETGQTDLAE 81 (84)
T ss_pred HHHHHHHHHhcC---CCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHhcCchHHHH
Confidence 345777777776 22222222222355678999999999988885 58899999999888877765
No 349
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=35.76 E-value=1e+02 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
.+.|.+++..-.+.. ....|+..|+.++.+.|+-|.++++
T Consensus 44 ~eq~~~mL~~W~~r~------g~~at~~~L~~AL~~i~r~Di~~~~ 83 (84)
T cd08317 44 AQQAQAMLKLWLERE------GKKATGNSLEKALKKIGRDDIVEKC 83 (84)
T ss_pred HHHHHHHHHHHHHhc------CCcchHHHHHHHHHHcChHHHHHHh
Confidence 356666665554432 2236777777777777777766654
No 350
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=35.50 E-value=3.2e+02 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE 111 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~ 111 (229)
.+++.|.+.|.+++|++++..+++-
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L 135 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRL 135 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHH
Confidence 5677888888888888888777654
No 351
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=34.84 E-value=2.7e+02 Score=23.29 Aligned_cols=105 Identities=13% Similarity=-0.036 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
|.+.---.|-.++.+.|+..||...|.+-...- .-|.-..-.+-++...-++...|...++..-+..-.. -.||..-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-r~pd~~L- 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-RSPDGHL- 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-CCCCchH-
Confidence 666555667889999999999999999987522 5677777888888889999999999998876642110 0266543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+-+.|...|+.+.|+.-|+..-.+.++
T Consensus 165 -l~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 165 -LFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred -HHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 4668888899999999999877766443
No 352
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.83 E-value=2.2e+02 Score=28.43 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC--C-CCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCCCCCHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEI--D-GGDGRGLSRVVRAVVEAGSKE------STVRIYGLMKRSGVGCSWKVDEYV 192 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~--g-~pd~~tyn~lI~~~~~~g~~~------~A~~~f~~M~~~g~~~~~~Pd~~T 192 (229)
+|..+|..+|++-.+..+++..... | +.=...||.-|+.+.+.|.++ .|.++++. .-+. -|.-|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln----~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLN----GDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcC----CcchH
Confidence 8999999999999999999987643 3 444578999999999999775 33333332 2343 68899
Q ss_pred HHHHHHHHHh
Q 026993 193 GKVLSKGLRR 202 (229)
Q Consensus 193 y~~Li~~~~~ 202 (229)
|..|+.+-..
T Consensus 106 ~all~~~sln 115 (1117)
T COG5108 106 YALLCQASLN 115 (1117)
T ss_pred HHHHHHhhcC
Confidence 9999877543
No 353
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.51 E-value=3.2e+02 Score=24.02 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=62.7
Q ss_pred HHHHHHh-cC-CHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-C-CCCHHHHHHHHHHHH
Q 026993 88 ALRELIR-QG-ECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI-D-GGDGRGLSRVVRAVV 162 (229)
Q Consensus 88 vl~~l~~-~g-~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~-g-~pd~~tyn~lI~~~~ 162 (229)
+|+.+.. .+ ....-.++.+.+...++ .++.-+-.++|..+++.++...-.++++.-... + .-|...|..+|+...
T Consensus 170 LL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~ 249 (292)
T PF13929_consen 170 LLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIV 249 (292)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHH
Confidence 3455544 22 22233444444544422 367777889999999999999999999886654 4 668899999999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 026993 163 EAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g 181 (229)
..|+..-.. .++..|
T Consensus 250 ~sgD~~~~~----kiI~~G 264 (292)
T PF13929_consen 250 ESGDQEVMR----KIIDDG 264 (292)
T ss_pred HcCCHHHHH----HHhhCC
Confidence 999876554 455555
No 354
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=34.13 E-value=48 Score=22.30 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+.+.+++..-... . ++..|...|+.++.+.|+.+.|+.+-+.
T Consensus 40 ~~~~~~~L~~W~~~--~----~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 40 REQTYEMLQRWRQR--E----GPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHH--H----GSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--c----CCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 45666666666554 1 3345777788888888888877776553
No 355
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.59 E-value=86 Score=22.40 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+.+..+.+|-.+.+ .+|.++|=..|+|++..++.... +++..+.+
T Consensus 40 ~~~~il~l~l~~L~-------d~DsyVYL~aI~~L~~La~~~p~-~vl~~L~~ 84 (92)
T PF10363_consen 40 DIPKILDLFLSQLK-------DEDSYVYLNAIKGLAALADRHPD-EVLPILLD 84 (92)
T ss_pred hHHHHHHHHHHHcC-------CCCchHHHHHHHHHHHHHHHChH-HHHHHHHH
Confidence 35556666665543 28999999999999988877654 44444443
No 356
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.15 E-value=1.8e+02 Score=26.22 Aligned_cols=122 Identities=9% Similarity=-0.017 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhhCC----CCC-HHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-----YQQQDLGLLTDLINTL-AKNGLTGEVDRLIGELEEID----GGD-GRGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-----~~~pd~~ty~~LI~~~-~k~g~~~~A~~lf~~M~~~g----~pd-~~tyn 155 (229)
....-+|+.|+-+.|++.+...-+. .+ -|++.|..=+.-+ ....-+.+-.+.-+.|.++| +.| ..+|-
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~ktvs~g~k-iDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~ 187 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEKTVSLGHK-IDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQ 187 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHH
Confidence 4566788999999999998876544 34 7887776655432 23333445555555555555 334 35776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.|-.. ...++.+|-.+|-+-... .+- --++.++|+ ++.|+....+.|.-.+|.+
T Consensus 188 Gly~m--svR~Fk~Aa~Lfld~vsTFtS~El~--~Y~~~v~Yt-v~~g~i~leR~dlktKVi~ 245 (393)
T KOG0687|consen 188 GLYCM--SVRNFKEAADLFLDSVSTFTSYELM--SYETFVRYT-VITGLIALERVDLKTKVIK 245 (393)
T ss_pred HHHHH--HHHhHHHHHHHHHHHcccccceecc--cHHHHHHHH-HHHhhheeccchHHhhhcC
Confidence 65433 334678888888665431 111 026788887 4556667888887777665
No 357
>PRK11906 transcriptional regulator; Provisional
Probab=33.04 E-value=4.2e+02 Score=24.90 Aligned_cols=91 Identities=9% Similarity=-0.153 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCCCCCHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGL-MKRSGVGCSWKVDEYV 192 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~-M~~~g~~~~~~Pd~~T 192 (229)
|.+.-..+=..+.-.|+++.|..+|+.-..-+ .++...|..++. +-+|+.++|.+.+++ +..+-.. --...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~--~~~G~~~~a~~~i~~alrLsP~~----~~~~~ 410 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH--FHNEKIEEARICIDKSLQLEPRR----RKAVV 410 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCchh----hHHHH
Confidence 55554444445566777888888888766544 334455666555 557888999888887 4433222 23334
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 026993 193 GKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 193 y~~Li~~~~~~g~~~~A~~v~ 213 (229)
..-.|+-|+.. .+|.|.+++
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHH
Confidence 44455566554 356666555
No 358
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=32.45 E-value=4.2e+02 Score=24.73 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhCCCCCH--HHHHHHHHHHHHcCCHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTL--AKNGLTGEVDRLIGELEEIDGGDG--RGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~--~k~g~~~~A~~lf~~M~~~g~pd~--~tyn~lI~~~~~~g~~~~A 170 (229)
.|+-.+|.++-.+-.+.+. .|..-.--|+.+- --.|+.++|.+-|+.|... |.. .-.-.|.-.--+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~lls-sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLS-SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4677777776666554433 3433222333322 2369999999999999852 322 2222333334477888888
Q ss_pred HHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 171 VRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
.+.-++--+.- | -.....+++...|..|+++.|.++.+.-+
T Consensus 174 r~yAe~Aa~~A------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 174 RHYAERAAEKA------PQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHhhc------cCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 87666655432 3 23677889999999999999999997543
No 359
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.90 E-value=1.5e+02 Score=19.44 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHH-----HcCCHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVV-----EAGSKESTVRI 173 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~-----~~g~~~~A~~~ 173 (229)
+-..|++-+|.++++++=... .+....|-.||.... +.|+.+-|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 334566666666666653222 233444555554332 44555555444
No 360
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.65 E-value=3.7e+02 Score=27.37 Aligned_cols=78 Identities=8% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
|.+.|++++|..-+-+-..... | ..+|.-|-...++.+--..++.+.++|.-+...-+.|+++|.|.++.++-.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le-~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLE-P-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCC-h-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHH
Confidence 3456677777665543322122 1 245566666666777777777777777334444567888888888777655
Q ss_pred HHHH
Q 026993 172 RIYG 175 (229)
Q Consensus 172 ~~f~ 175 (229)
++.+
T Consensus 452 efI~ 455 (933)
T KOG2114|consen 452 EFIS 455 (933)
T ss_pred HHHh
Confidence 5443
No 361
>cd08340 DED_c-FLIP_repeat2 Death Effector Domain, repeat 2, of cellular FLICE-Inhibitory Protein. Death Effector Domain (DED), repeat 2, similar to that found in cellular FLICE-inhibitory protein (c-FLIP/CASH, also known as Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of the Death Inducing Signalling Complex (DISC). At low levels, c-FLIP has been shown to enhance apoptotic signaling by allosterically activating caspase-8. As a modulator of the initiator caspases, c-FLIP regulates life and death in various types of cells and tissues. All members contain two N-terminal DEDs and a C-terminal pseudo-caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-as
Probab=31.52 E-value=1e+02 Score=21.47 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
....+.++|.+|.+.|.- .||..++ |-..|...++.|...+|
T Consensus 37 ~~~s~l~lf~~Lek~~~l---~~~nl~~--L~elL~~I~R~DLl~~i 78 (81)
T cd08340 37 KDKSFLELVLELEKLNLV---SPNKVDL--LEDCLRNIRRIDLKKKI 78 (81)
T ss_pred ccCCHHHHHHHHHhcCCC---CCccHHH--HHHHHHHcCHHHHHHHH
Confidence 445677888888887764 3665544 56666666777666443
No 362
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=30.80 E-value=6.4e+02 Score=26.34 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCC----------------------HHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGL----------------------TGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 120 y~~LI~~~~k~g~----------------------~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
=++||.++++.|. .+.-.+.|.++..-= .-|..+|..-..-+...|++..|..+..+
T Consensus 1177 k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~k 1256 (1304)
T KOG1114|consen 1177 KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLK 1256 (1304)
T ss_pred HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHH
Confidence 4578888888763 222334444443322 34667777777788888999999999888
Q ss_pred HHH-cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 177 MKR-SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 177 M~~-~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
..+ .|-. ++.-.|--++.-+...|--..|--+.+.|.=.++.++
T Consensus 1257 liee~~es----~t~~~~~~~~el~~~Lgw~H~~t~~~~~~~v~~p~Sy 1301 (1304)
T KOG1114|consen 1257 LIEENGES----ATKDVAVLLAELLENLGWNHLATFVKNWMRVPFPYSY 1301 (1304)
T ss_pred HHHhcccc----chhHHHHHHHHHHHHhCchHhHHHHhhheeccCCccc
Confidence 865 4443 7777777677777766655444433333333356655
No 363
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.50 E-value=1.7e+02 Score=26.62 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 133 TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 133 ~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
+-+|+++|..-.+. -..+|+ ++.+...--...+-|.+.... --++.-.-|-.+--+.|+..+|.++
T Consensus 232 i~~AE~l~k~ALka---~e~~yr-------~sqq~qh~~~~~da~~rRDtn----vl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKA---GETIYR-------QSQQCQHQSPQHEAQLRRDTN----VLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHH---HHHHHh-------hHHHHhhhccchhhhhhcccc----hhhHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHhhhcCC
Q 026993 213 EREFCWVPG 221 (229)
Q Consensus 213 ~~e~~~~~~ 221 (229)
++++.+..+
T Consensus 298 ~RDL~ke~p 306 (556)
T KOG3807|consen 298 MRDLMKEFP 306 (556)
T ss_pred HHHHhhhcc
No 364
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=30.18 E-value=1.8e+02 Score=20.38 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 129 KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
..|+.+.|..+++.+. +| .-.|..++.|+-..|..+-|
T Consensus 44 ~~G~~~aa~~Ll~~L~-r~---~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 44 NSGNIKAAWTLLDTLV-RR---DNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred cCChHHHHHHHHHHHh-cc---CChHHHHHHHHHHcCCHHHH
Confidence 4566666666666666 32 12456666666666655544
No 365
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.17 E-value=2e+02 Score=20.32 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 137 DRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 137 ~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
..+++.+.++|.-+..-+..+- ...-+.+++.++++.....|- ..|.++.+++...|....|.-+
T Consensus 23 ~~v~~~L~~~gvlt~~~~~~I~---~~~t~~~k~~~Lld~L~~RG~--------~AF~~F~~aL~~~~~~~La~lL 87 (90)
T cd08332 23 DELLIHLLQKDILTDSMAESIM---AKPTSFSQNVALLNLLPKRGP--------RAFSAFCEALRETSQEHLCDLL 87 (90)
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---cCCCcHHHHHHHHHHHHHhCh--------hHHHHHHHHHHhcChHHHHHHH
Confidence 3466666666522222222222 234578999999999998885 4889999999877776666544
No 366
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.04 E-value=68 Score=23.09 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG--SKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g--~~~~A~~~f~~M~~~g~~ 183 (229)
+.+|..|...|+.+||..-+.++....... ..-..+|..+...+ ..+.+..++..+...+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~-~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHH-EVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHH-HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 456778888899999999999875422111 23334444444442 345566777777776663
No 367
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.03 E-value=2.8e+02 Score=29.29 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDL--GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~--~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.+.++...|+|.+|+.+-..+.. . .|- .+--.|+.-+...|+.-||-++..+-.+. +.-.+.-||++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--G-KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--C-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHh
Confidence 45556666777777766665532 1 222 23467888888899999988888776542 445677888999
Q ss_pred CHHHHHHHHHH
Q 026993 166 SKESTVRIYGL 176 (229)
Q Consensus 166 ~~~~A~~~f~~ 176 (229)
.+++|.++-..
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 99999886543
No 368
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=29.70 E-value=74 Score=28.27 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSR 156 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~ 156 (229)
.|++.+.++|.+++|.++....+.-. .|+......
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~ 147 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKS 147 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHH
Confidence 45666777777777777666654433 566443333
No 369
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.41 E-value=5e+02 Score=24.61 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 026993 152 RGLSRVVRAVVEAGSK------ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA 209 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~------~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A 209 (229)
.+|.+|++.+|..... ++....+.+....+.. +-|..--.+.|++++..|.....
T Consensus 419 l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~LkaLGN~g~~~~i 479 (574)
T smart00638 419 LAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS---KGDEEEIQLYLKALGNAGHPSSI 479 (574)
T ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh---cCCchheeeHHHhhhccCChhHH
Confidence 6777888877766642 4444544444333221 12333345578888888876544
No 370
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.19 E-value=3.8e+02 Score=23.27 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
|.....-.|+.. |-.+++++|.+++.+.-+.|+.
T Consensus 237 PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 237 PHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYS 270 (333)
T ss_pred CChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCC
Confidence 455555555554 3445677777777777777775
No 371
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=28.39 E-value=1.8e+02 Score=20.50 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 131 GLTGEVDRLIGELEE-IDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 131 g~~~~A~~lf~~M~~-~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
|..+.|..+++.+.. +| |+ .|..+|.|+-+.|..+-|
T Consensus 48 g~~~aa~~Ll~~L~~~r~-~~--wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 48 GNIAAAEELLDRLERCDK-PG--WFQAFLDALRRTGNDDLA 85 (88)
T ss_pred ChHHHHHHHHHHHHHhcc-CC--cHHHHHHHHHHcCCccHH
Confidence 666667777776664 32 22 456667776666654444
No 372
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.35 E-value=1.6e+02 Score=19.69 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEID-GGDG---RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~---~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
+.++..+..|+++-+..|++ .| .++. .-+|.|..+ +..|+ .++.+.+.+.|+.
T Consensus 28 ~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A-~~~~~----~~~~~~Ll~~g~~ 84 (89)
T PF12796_consen 28 TALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYA-AENGN----LEIVKLLLEHGAD 84 (89)
T ss_dssp BHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHH-HHTTH----HHHHHHHHHTTT-
T ss_pred CHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCC
Confidence 45556666666544444443 44 3333 244555443 34444 3344555566654
No 373
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=28.33 E-value=2.6e+02 Score=21.09 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH-HhhhCC-CCCHHHHHHHHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIG-ELEEID-GGDGRGLSRVVRAVV 162 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~-~M~~~g-~pd~~tyn~lI~~~~ 162 (229)
+.-++|.++.++|...| +++++ +|..++ .-|..-||-++--+|
T Consensus 23 ~~Dvs~SSv~sMLLELG-----LRVYeaQ~erkes~Fnq~eFnK~lLE~v 67 (118)
T PRK13713 23 EKDVSFSSVASMLLELG-----LRVYEAQMERKESGFNQTEFNKLLLECV 67 (118)
T ss_pred ccCccHHHHHHHHHHHh-----HHHHHHHHHhhcCcccHHHHHHHHHHHH
Confidence 44466777777765544 44444 354444 556666765554333
No 374
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.24 E-value=1.8e+02 Score=20.25 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMK 178 (229)
Q Consensus 166 ~~~~A~~~f~~M~ 178 (229)
.+..|.+-|++|.
T Consensus 60 ~L~~aL~ey~~~~ 72 (82)
T PF11123_consen 60 ELAAALEEYKKMV 72 (82)
T ss_pred HHHHHHHHHHHHc
Confidence 3445555566654
No 375
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=28.23 E-value=4.6e+02 Score=23.90 Aligned_cols=138 Identities=14% Similarity=0.051 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH--cCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCC-CCCHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE--YQQQ-DLGLLTDLINTLAK---NGLTGEVDRLIGELEEID-GGDGRGLSRVVR 159 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~--~~~p-d~~ty~~LI~~~~k---~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~ 159 (229)
.++-+|....+++.-+++.+.+..- +..+ ...+---.--++-| .|+-++|.+++..+.... .++.-||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555666677777777777777553 1000 11111122235556 778888888887744333 455555544443
Q ss_pred HHH----H-----cCCHHHHHHHHHHHH-----------------------------------------HcCCCCCCCCC
Q 026993 160 AVV----E-----AGSKESTVRIYGLMK-----------------------------------------RSGVGCSWKVD 189 (229)
Q Consensus 160 ~~~----~-----~g~~~~A~~~f~~M~-----------------------------------------~~g~~~~~~Pd 189 (229)
.|- . ...+++|.+.|.+=- ++|.. +-..|
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~-~~~~d 304 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL-EKMQD 304 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc-ccccc
Confidence 332 1 113445555554321 12221 00234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 190 EYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 190 ~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
-.-+.++..+..-.|+.+.|.+..+.|-+..++.|+
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 455566666666677777777777777776666664
No 376
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.08 E-value=3.3e+02 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTI 108 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m 108 (229)
+-+++.+.|+++.|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554
No 377
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.69 E-value=26 Score=22.80 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH
Q 026993 133 TGEVDRLIGELEEID-GGDGRGLSRVVRAVVE 163 (229)
Q Consensus 133 ~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~ 163 (229)
-++...+|..|..+. .|....||-.+.=|..
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 356778888888888 8888888877776654
No 378
>cd08333 DED_Caspase_8_repeat1 Death effector domain, repeat 1, of Caspase-8. Death effector domain (DED) found in caspase-8 (CASP8, FLICE), repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-10, and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 also plays many important non-apoptotic functions including roles in embryonic development, cell adhesion and motility, immune cell proliferation and differentiation, T-cell activation, and NFkappaB signaling. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the
Probab=27.41 E-value=1.2e+02 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.+...|.++|.+|.+.|.- .||...| |-.-+.+.|+.|...++++
T Consensus 34 e~~~s~ldlf~~Lek~~~L---~~~nl~~--L~elL~~I~R~DLl~~~l~ 78 (82)
T cd08333 34 ENIKDALALFQALQEKGLL---EEGNLSF--LKELLYRIGRIDLLTSHLG 78 (82)
T ss_pred hccCCHHHHHHHHHHcCCC---CcchHHH--HHHHHHHcCHHHHHHHHhc
Confidence 3456788888888888864 2554443 5555667777777666553
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.14 E-value=2e+02 Score=24.82 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHH
Q 026993 96 GECAVAVHVFSTI 108 (229)
Q Consensus 96 g~~~~A~~vf~~m 108 (229)
+.+++|-++|..-
T Consensus 28 ~k~eeAadl~~~A 40 (288)
T KOG1586|consen 28 NKYEEAAELYERA 40 (288)
T ss_pred cchHHHHHHHHHH
Confidence 4566666666554
No 380
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=27.11 E-value=1.8e+02 Score=22.70 Aligned_cols=97 Identities=7% Similarity=-0.049 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCC
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDG---G----DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWK 187 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~---p----d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~ 187 (229)
|+..++.-.|....-.-.+|-.-++.+.=.+... | +...|.+||-|+-....+-.--.++.|-.+..-.
T Consensus 16 ~~~e~f~~ai~e~lV~EmYE~igKlRN~~~~G~~~~lp~~A~~~A~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~r---- 91 (143)
T PF07827_consen 16 PESEEFRQAIREFLVGEMYEFIGKLRNARQSGPHTYLPYLAMQLAWYGAMLIGLHNRTLYTTSARVLPEALSLPSR---- 91 (143)
T ss_dssp --HHHHHHHHHHHHHHTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHCT---SSCCCHHHHHTTSSS-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccCchhhhHHHHHHHHHHHHHHHHHhccceeeccccccHHHhcCCCC----
Confidence 5555555555444433334444444433322111 1 3456777888877777666666666666554433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|+.+= -|+. +...|++-++.+|++.+..
T Consensus 92 P~Gyd--~l~~-lvm~G~L~d~~~i~~~cE~ 119 (143)
T PF07827_consen 92 PSGYD--ELAQ-LVMSGQLTDPEKIYESCEA 119 (143)
T ss_dssp -TTHH--HHHH-HHHHTB---HHHHHHHHHH
T ss_pred CccHH--HHHH-HHhccccCCHHHHHHHHHH
Confidence 55433 3444 3356777777777766543
No 381
>PRK09857 putative transposase; Provisional
Probab=26.60 E-value=4.3e+02 Score=22.99 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
..++++-..+.|+.++-.++++.+.+.........-++-.-+-+.|.-+++.++-.+|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566766677788877888887776543112223335556667778778888889999999985
No 382
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.55 E-value=3e+02 Score=26.47 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 026993 122 DLINTLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~ 144 (229)
.||.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34445555555555555555554
No 383
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.41 E-value=2.3e+02 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=15.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 026993 158 VRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~ 179 (229)
-......|+.++|++.+++-++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3345677888888888877654
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.32 E-value=1.4e+02 Score=26.42 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 115 QDLGL-LTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 115 pd~~t-y~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
||..+ ||.-|..-.+.|++++|+.|.+|-+.-|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 67665 7799999999999999999999999888
No 385
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.21 E-value=56 Score=30.56 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH----HHHHHHHHhcCC
Q 026993 130 NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG----KVLSKGLRRFGE 205 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty----~~Li~~~~~~g~ 205 (229)
...++||.++-++-.+.|.|-. -|.+-.|.+++.++.++|+. ||.+|= --.++||+-.|-
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~S------------Igl~GNaaei~~~l~~r~~~----pD~vtDQTsaHdp~~GY~P~G~ 279 (561)
T COG2987 216 AETLDEALALAEEATAAGEPIS------------IGLLGNAAEILPELLRRGIR----PDLVTDQTSAHDPLNGYLPVGY 279 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceE------------EEEeccHHHHHHHHHHcCCC----CceecccccccCcccCcCCCcC
Confidence 3467777777777666554332 23445677888888888876 877764 235666766663
Q ss_pred -HHHHHHHH
Q 026993 206 -EELANEVE 213 (229)
Q Consensus 206 -~~~A~~v~ 213 (229)
+|++.++.
T Consensus 280 s~ee~~~lr 288 (561)
T COG2987 280 TVEEADELR 288 (561)
T ss_pred CHHHHHHHH
Confidence 44454443
No 386
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.85 E-value=5.6e+02 Score=24.03 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
....||++ .+.++.+.|+.++.+|...|.. |..+.=..++.+.-..|
T Consensus 246 ~i~~li~s-i~~~d~~~Al~~l~~ll~~Ged----p~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 246 VVRDYINA-IFNGDVKRVFTVLDDVYYSGKD----YEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcc
Confidence 34455554 3668899999999999888875 66655555544444444
No 387
>cd08338 DED_PEA15 Death Effector Domain of Astrocyte phosphoprotein PEA-15. Death Effector Domain (DED) similar to that found in PEA-15 (Astrocyte phosphoprotein PEA-15). PEA-15 is a multifunctional phosphoprotein that modulates signaling pathways, like the ERK MAP kinase cascade by binding to ERK and changing its subcellular localization. It has been implicated in apoptosis, cell proliferation, and glucose metabolism. It does not possess enzymatic activity and mainly acts as an adaptor protein. PEA-15 contains an N-terminal DED domain and a C-terminal disordered region. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can
Probab=25.79 E-value=1.7e+02 Score=20.49 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
....+.++|.+|.+.|.- .||...| |-.-|...++.|...++.
T Consensus 37 ~~~s~ldlf~~Lek~~~L---~~dnl~~--L~elL~~i~R~DLl~~i~ 79 (84)
T cd08338 37 EITSGRDWFSFLEKHDKL---SQDNLSY--IEHVFEISRRPDLLTMVV 79 (84)
T ss_pred ccCCHHHHHHHHHHcCCC---CCchHHH--HHHHHHHcCHHHHHHHHH
Confidence 444666777777777653 2544433 455555666666655544
No 388
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=25.17 E-value=82 Score=20.95 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHhhhCC
Q 026993 132 LTGEVDRLIGELEEID 147 (229)
Q Consensus 132 ~~~~A~~lf~~M~~~g 147 (229)
+++.|...|.+++..|
T Consensus 40 d~~~Al~~F~~lk~~~ 55 (63)
T smart00804 40 DYERALKNFTELKSEG 55 (63)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4566666666666555
No 389
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=4.5e+02 Score=22.73 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=30.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH----HHHHHHhcCCHHH--HHHHHHHhhh
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV----LSKGLRRFGEEEL--ANEVEREFCW 218 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~----Li~~~~~~g~~~~--A~~v~~e~~~ 218 (229)
..|++.+|+++|++....... -+..-|++ +-.|+|.....|+ +..-+++-++
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~----n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD----NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 456788999999999877664 44444542 3445565554443 3344444333
No 390
>cd08792 DED_Caspase_8_10_repeat1 Death effector domain, repeat 1, of initator caspases 8 and 10. Death Effector Domain (DED) found in caspase-8 and caspase-10, repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis, and they play partially redundant roles. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. They contain two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains foun
Probab=25.01 E-value=1.2e+02 Score=20.81 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELAN 210 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~ 210 (229)
....|.++|.+|.+.|.- .+|...| |-.-+...|+.|...
T Consensus 35 ~~~s~ldlf~~Le~~~~l---~~dnl~~--L~elL~~I~R~DLl~ 74 (77)
T cd08792 35 TVSSGKDLFLQLEEKGLL---EVEDLFF--LAELLYRINRHDLLR 74 (77)
T ss_pred ccCCHHHHHHHHHHcCCC---CcchHHH--HHHHHHHcCHHHHHH
Confidence 344678888888887763 2444443 566666667666654
No 391
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.77 E-value=1.4e+02 Score=21.75 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=32.2
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 128 AKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 128 ~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
.+...++.|..+|..++++|.++.-.+.-|-.-+..-++.|-- ...+.=++.-+.
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gll~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~ 89 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGRCDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVC 89 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCC
Confidence 4446778888899998888844443434555555555665544 433333333443
No 392
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.49 E-value=4.6e+02 Score=22.60 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC----CCCCCCCCHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA---GSKESTVRIYGLMKRSG----VGCSWKVDEYV 192 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~---g~~~~A~~~f~~M~~~g----~~~~~~Pd~~T 192 (229)
-...|..+...|++..|.++..+..+- ...+-.-.|=. .++++-.+..++|.+.. |. .=|.-.
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~~-------l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~ 199 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQL-------LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDK 199 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-------HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHH
Confidence 445566777888888888888877642 11111111111 12333334444433321 11 257788
Q ss_pred HHHHHHHHHhcCCHHHH
Q 026993 193 GKVLSKGLRRFGEEELA 209 (229)
Q Consensus 193 y~~Li~~~~~~g~~~~A 209 (229)
|..++.||.-.|+...+
T Consensus 200 Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 200 YSKVQEAYQLLGKTQSA 216 (291)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 88899998888876654
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.45 E-value=3.4e+02 Score=26.10 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=56.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC-------HHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDL-GLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD-------GRG 153 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~-~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd-------~~t 153 (229)
+...++..|.+.+++++|..+...|-=. +. ... ..-+.+.+.+.|..--.+.+..++...-.= .|. +.-
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g-~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~e 488 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMG-EQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLE 488 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 3457889999999999999999888432 22 111 345667788888766666666666654322 222 234
Q ss_pred HHHHHHHHH--------HcCCHHHHHHHHHH
Q 026993 154 LSRVVRAVV--------EAGSKESTVRIYGL 176 (229)
Q Consensus 154 yn~lI~~~~--------~~g~~~~A~~~f~~ 176 (229)
|-.-|+.|. |.+++++|+.+=.+
T Consensus 489 y~d~V~~~aRRfFhhLLR~~rfekAFlLAvd 519 (545)
T PF11768_consen 489 YRDPVSDLARRFFHHLLRYQRFEKAFLLAVD 519 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 444444443 56666776654433
No 394
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.41 E-value=3.3e+02 Score=25.83 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
-.+|++|.-.|...+|-+-..++---+- ..-+.|-+||.++-+.|+-..-+.|+.+.-.. ..+|-|.|-.||-|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s---glIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKS---GLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CceeHHHhhhhhhhh
Confidence 3578999999999999876655522122 45678999999999999988778888877665 467889999999764
No 395
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=24.31 E-value=1.4e+02 Score=26.36 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=51.4
Q ss_pred HHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 141 GELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 141 ~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.||+.+| .-+...|++.+-. ...+-..++|.+..+.|..| -+..||.+-..++.+....+++.++.+
T Consensus 19 tELe~rG~~l~~plWSa~~l~----~~peiv~~vh~df~~aGa~i---i~T~TYqa~~~~~~e~~~~~~~~~l~~ 86 (300)
T COG2040 19 TELERRGCDLSDPLWSALALV----DEPEIVRNVHADFLRAGADI---ITTATYQATPEGFAERVSEDEAKQLIR 86 (300)
T ss_pred HHHHhcCCCCCchhhhhhhcc----cCHHHHHHHHHHHHHhcCcE---EeehhhhcCHHHHHHhcchhHHHHHHH
Confidence 4778888 4444488876542 23778888998888888765 789999999999999888888877765
No 396
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.20 E-value=5.1e+02 Score=24.67 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 026993 127 LAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~ 145 (229)
++...+++.|...|....+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3344455555555554433
No 397
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.93 E-value=4.5e+02 Score=22.33 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHH--c---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 98 CAVAVHVFSTIQRE--Y---QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 98 ~~~A~~vf~~m~~~--~---~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
...|.+.|+.+... - . .+.-.-..++....+.|..++...+++..... .+..--+.++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~-i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~--~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESS-IPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS--TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTST-S-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT--STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccc-cchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc--CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45678888887664 2 3 45566677788888888877766666666543 467778899999999988888888
Q ss_pred HHHHHHHcC-CCCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 026993 173 IYGLMKRSG-VGCSWKVDEYVGKVLSKGLRRFGEE--ELANEVER 214 (229)
Q Consensus 173 ~f~~M~~~g-~~~~~~Pd~~Ty~~Li~~~~~~g~~--~~A~~v~~ 214 (229)
+++.....+ +. +.. . ..++.++...+.. +.+.+.++
T Consensus 223 ~l~~~l~~~~v~----~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR----SQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-----TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc----cHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888877754 54 333 2 3355566644443 56655554
No 398
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=23.31 E-value=1.6e+02 Score=21.54 Aligned_cols=52 Identities=12% Similarity=-0.071 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHhhhCC--CC
Q 026993 97 ECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTG---EVDRLIGELEEID--GG 149 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~---~A~~lf~~M~~~g--~p 149 (229)
+.+.+++........ .- |+.+|-+.+|+.+.++..+. ||.-+=..+...| .|
T Consensus 11 Dp~~GIk~~~~~~~~tv~-~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGyL~P 68 (99)
T cd04445 11 DPEKGIKELNLEKDKKVF-NHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGYLQP 68 (99)
T ss_pred CcccchhhhhHHHhhccc-cceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCCeee
Confidence 444455544444333 44 88899999999999988765 7888888888888 55
No 399
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.22 E-value=2e+02 Score=20.08 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLI 140 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf 140 (229)
.+.+.+++...++... .-.|...|+.++.++|.-+-|..+|
T Consensus 46 ~eq~~~mL~~W~~r~g--~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDREG--SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhcC--ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 3445555555544322 2246777777777777777777665
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=22.59 E-value=1.3e+02 Score=15.50 Aligned_cols=12 Identities=0% Similarity=-0.020 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 026993 133 TGEVDRLIGELE 144 (229)
Q Consensus 133 ~~~A~~lf~~M~ 144 (229)
.+.|..+|+.+.
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 401
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.50 E-value=5.7e+02 Score=25.75 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
+-+-.|.-+..-|+..+|.++-.+-+ .||-..|--=|.++...+++++-.++=+.++. - +=|--.+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskks-P---------IGy~PFVe 752 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-P---------IGYLPFVE 752 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C---------CCchhHHH
Confidence 34555667778899999988877765 58988999999999999999987776555542 1 34555778
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 026993 199 GLRRFGEEELANEVEREFC 217 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~ 217 (229)
.|.+.|+.+||.+++-.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhcccHHHHhhhhhccC
Confidence 8999999999999886543
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.49 E-value=2.4e+02 Score=20.23 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=23.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCH
Q 026993 123 LINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~ 167 (229)
++..+...+..-.|.++++++.+++ ..+..|-=-.++.+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444444444445666666666655 44544433344445555543
No 403
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.15 E-value=2e+02 Score=20.66 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGE 135 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~ 135 (229)
.+++.+...+..-.|.++++.++++ .. .+..|---.|+.+.+.|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~-i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPS-ISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhCCCEEE
Confidence 5667777766666788888888776 44 565554445566677665543
No 404
>cd08775 DED_Caspase-like_repeat2 Death effector domain, repeat 2, of initator caspase-like proteins. Death Effector Domain (DED), second repeat, found in initator caspase-like proteins like caspase-8, -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DISC.
Probab=22.04 E-value=1.9e+02 Score=20.11 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELAN 210 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~ 210 (229)
....+.++|.+|.+.|.- .||...+ |-.-|...++.+...
T Consensus 37 ~~~s~ldlf~~Lek~~lL---~~~nl~~--L~elL~~I~R~dLl~ 76 (81)
T cd08775 37 DDMNFLDIVIEMENRVLL---GPGKVDI--LKRMLRQLRRKDLLK 76 (81)
T ss_pred ccCCHHHHHHHHHHcCCC---CCccHHH--HHHHHHHcCHHHHHH
Confidence 344567777777777764 3654433 444455555555553
No 405
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=21.96 E-value=2.6e+02 Score=20.16 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.|...+++..-.... ...-+|..||.+|-+++.-.-|++|...+++
T Consensus 49 ~Eq~~qmL~~W~~~~------G~~a~~~~Li~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 49 AEQKVQLLRAWYQSH------GKTGAYRTLIKTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHHHHHHHHHHh------CCCchHHHHHHHHHHccchhHHHHHHHHHHh
Confidence 455556665443321 2335678888888888888788877665554
No 406
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=21.94 E-value=3.1e+02 Score=19.69 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLI 140 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf 140 (229)
..|-+.|-.+.+.+.+..+++.-+ .. .|-..|+.++-.|+.-.-|+.++
T Consensus 40 ~~y~r~gL~EqvyQ~L~~W~~~eg-~~-Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 40 YEYDREGLYEQAYQLLRRFIQSEG-KK-ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hhcccccHHHHHHHHHHHHHHhcc-cc-chHHHHHHHHHHccchHHHHHHh
Confidence 345556666666666666654311 11 55666777777777666666554
No 407
>KOG4104 consensus Ganglioside-induced differentiation associated protein 3 [Signal transduction mechanisms]
Probab=21.63 E-value=1.2e+02 Score=21.97 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 186 WKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 186 ~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|.||..+|.-|.+.+--.|-+.+-.+.|+|-
T Consensus 58 wYPnh~~~h~Lmk~LRf~GLfrDeHqdF~de 88 (113)
T KOG4104|consen 58 WYPNHPMFHYLMKMLRFHGLFRDEHQDFRDE 88 (113)
T ss_pred hccCchHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4588888888888888888777766666543
No 408
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.61 E-value=3.1e+02 Score=19.56 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQ 109 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~ 109 (229)
+..++.++...+++++|.+-+.++.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhC
Confidence 4456777778888888877776664
No 409
>cd08791 DED_DEDD2 Death Effector Domain of DEDD2. Death Effector Domain (DED) found in DEDD2. DEDD2 has been shown to bind to itself, DEDD, and to the two tandem DED-containing caspases, caspase-8 and -10. It may play a role in apoptosis. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways.
Probab=21.49 E-value=1.6e+02 Score=21.77 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 132 LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 132 ~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
++....++|..+.++|..|..-+.-|+.-+.--++.|-+-.+=.+ +..-+. ||.++|
T Consensus 48 ~i~SGldLf~~Leer~~l~e~Nt~~L~qLLr~i~RhDLl~~v~~k-~r~~v~----p~~~~~ 104 (106)
T cd08791 48 RPKSGVELLLELERRGYCDESNLRPLLQLLRVLTRHDLLPFVSQK-RRRTVS----PERYKY 104 (106)
T ss_pred hccCHHHHHHHHHHhCcCChhhHHHHHHHHHHhhHHHHHHHHHHh-ccCCCC----cchhcc
Confidence 556678888888888855555555666666666666655443222 223343 887776
No 410
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=1.4e+02 Score=27.73 Aligned_cols=57 Identities=12% Similarity=-0.041 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHH
Q 026993 133 TGEVDRLIGELEEID-GG----DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEE 207 (229)
Q Consensus 133 ~~~A~~lf~~M~~~g-~p----d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~ 207 (229)
.++|.++|.++.+++ .. -++|||-+-.-|... |+ ||..|+..++..++..+++-
T Consensus 147 ~eka~~~~~~ll~~~~~~~~t~~Vvt~nef~tlc~~~----------------~~-----~~~~t~~l~l~~l~~~k~i~ 205 (439)
T KOG2911|consen 147 KEKALDVYAELLHEEVLSECTGAVVTLNEFQTLCSNL----------------GK-----PDEETKDLVLCWLAYQKHII 205 (439)
T ss_pred HHHHHHHHHHHHhhhhhhccCceeeeHHHHHHHhccC----------------CC-----CcHHHHHHHHHHHHhhhhee
Confidence 467888887766665 21 256777776655433 54 99999999999998887765
Q ss_pred HHH
Q 026993 208 LAN 210 (229)
Q Consensus 208 ~A~ 210 (229)
.+.
T Consensus 206 vg~ 208 (439)
T KOG2911|consen 206 VGE 208 (439)
T ss_pred eeh
Confidence 544
No 411
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.24 E-value=2.6e+02 Score=18.55 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 026993 135 EVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA 209 (229)
Q Consensus 135 ~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A 209 (229)
....+++.+.++|.-+..=+..+-. ...+.++|.++++.+...|- .+|..+++++.+.+..+.|
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~---~~~~~~k~~~Lld~l~~kg~--------~af~~F~~~L~~~~~~~L~ 77 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRS---ESTRQDKARKLLDILPRKGP--------KAFQSFLQALQETDQPHLA 77 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHc---CCChHHHHHHHHHHHHhcCh--------HHHHHHHHHHHhcCChhHH
Confidence 4455555665555223333333222 12256666666666665553 3566666666555544443
No 412
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=21.07 E-value=5.4e+02 Score=23.43 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG-----------LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g-----------~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
++..|.++++.+ |+.--|...|.---+.| .+++-.++++.+.+.| -.....+.|+.|.+..
T Consensus 31 Df~dAv~FH~SL------P~HKrF~~~lE~a~~~~k~l~Qpragv~lLdehielL~tl~eeG--qADlLp~tIDSyTR~N 102 (485)
T COG4865 31 DFEDAVKFHQSL------PEHKRFSLALEKADKEGKTLSQPRAGVALLDEHIELLKTLQEEG--QADLLPSTIDSYTRLN 102 (485)
T ss_pred cHHHHHHHHhcC------CchhhHHHHHHhhhhcCceecccccCcchHHHHHHHHHHHHHhc--cccccchhhhhhhhhh
Confidence 455666666555 77777777775433322 4677777777777765 4577888888888888
Q ss_pred CHHHHHHHHHHHHHcC
Q 026993 166 SKESTVRIYGLMKRSG 181 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g 181 (229)
++|+|...+++-++.|
T Consensus 103 ~Ye~AavgL~~Sie~~ 118 (485)
T COG4865 103 RYEEAAVGLKKSIEAG 118 (485)
T ss_pred hHHHHHHHHHHhhhcC
Confidence 8888888777766654
No 413
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=20.83 E-value=4.5e+02 Score=23.96 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS-KESTVRIYGL 176 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~-~~~A~~~f~~ 176 (229)
+++-.++++.+.++.. .|. ..+.|+.|-|.+.+++|...+.+-.+.| ++.++||=-... ++.|.++.+.
T Consensus 72 LdehielL~tl~eeGq-ADl--Lp~tIDSyTR~N~Ye~AavgL~~Sie~~-------~S~LNGFP~vNhGv~~cR~i~~~ 141 (485)
T COG4865 72 LDEHIELLKTLQEEGQ-ADL--LPSTIDSYTRLNRYEEAAVGLKKSIEAG-------TSKLNGFPVVNHGVAACRRLTET 141 (485)
T ss_pred HHHHHHHHHHHHHhcc-ccc--cchhhhhhhhhhhHHHHHHHHHHhhhcC-------chhhcCCcccchhHHHHHHHHHh
Confidence 4455555555554434 554 5588999999999999999888776654 233333322221 2334444444
Q ss_pred HH-----HcCCCCCCCCCHHHH--HHHHHHHH
Q 026993 177 MK-----RSGVGCSWKVDEYVG--KVLSKGLR 201 (229)
Q Consensus 177 M~-----~~g~~~~~~Pd~~Ty--~~Li~~~~ 201 (229)
.. +.|- ||.... -+|..||.
T Consensus 142 V~~PlQirHGt-----PDARLLaeV~LasGF~ 168 (485)
T COG4865 142 VQKPLQIRHGT-----PDARLLAEVSLASGFT 168 (485)
T ss_pred cccceeeccCC-----ccHHHHHHHHHhcccc
Confidence 32 2343 888654 45666653
No 414
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=20.83 E-value=3.1e+02 Score=26.62 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---------------C-------
Q 026993 97 ECAVAVHVFSTIQRE------YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID---------------G------- 148 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~------~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---------------~------- 148 (229)
++.+|+++++.|..- |- -|+.+||++|++.- ++...++.-|+..| +
T Consensus 595 nI~~a~~my~~i~e~~RlyssCf-KN~iIYNaVISgIh-----eqmK~lmkl~PR~~iL~DiHF~aLL~K~kKp~K~~~t 668 (782)
T PF07218_consen 595 NIYEALQMYSYIAEYIRLYSSCF-KNMIIYNAVISGIH-----EQMKNLMKLMPRKPILKDIHFEALLNKEKKPQKITRT 668 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHH-----HHHHHHHHhCCCcchhHHHHHHHHhhhcccccccccc
Confidence 667788888777543 33 69999999998742 22333333333222 1
Q ss_pred ------CCHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHH-------cC--CCCCCCCCHHHHHHHHHHHHhc
Q 026993 149 ------GDGRGL----------SRVVRAVVEAGSKESTVRIYGLMKR-------SG--VGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 149 ------pd~~ty----------n~lI~~~~~~g~~~~A~~~f~~M~~-------~g--~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
|++.+| -++|++|.....- +-..+..+|+- .+ ++.+--||.--+.-||+-|-+
T Consensus 669 d~v~YdPTVKsyAL~~LeR~PmvsvInsfFEaKKK-~Ls~i~aqmKLDlfSL~nedlKiP~d~~~nsKL~~kLiskYK~- 746 (782)
T PF07218_consen 669 DYVLYDPTVKSYALTELEREPMVSVINSFFEAKKK-DLSDIMAQMKLDLFSLTNEDLKIPNDKGANSKLTAKLISKYKK- 746 (782)
T ss_pred cceecCchHHHHHhhhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhhHHhhccccccCCCCCCcchHHHHHHHHHHHH-
Confidence 334333 3566666655432 22233344432 11 110002777778888888864
Q ss_pred CCHHHHHHHHHHhhh
Q 026993 204 GEEELANEVEREFCW 218 (229)
Q Consensus 204 g~~~~A~~v~~e~~~ 218 (229)
|-+.+|+||..
T Consensus 747 ----EIK~~FkEMr~ 757 (782)
T PF07218_consen 747 ----EIKKLFKEMRD 757 (782)
T ss_pred ----HHHHHHHHHHH
Confidence 66788888864
No 415
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=20.47 E-value=92 Score=27.40 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=41.1
Q ss_pred HHHHhhhCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 139 LIGELEEIDGGDGRGLS-----RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 139 lf~~M~~~g~pd~~tyn-----~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
+++.|.+.| ||++.+| .+.....+...+++-+++++..++.+ |+..|-+.+|=|+ -...++-.+.+
T Consensus 158 ~l~~l~~aG-~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~------pgi~~~TgiIVGl--GETeee~~etl 228 (302)
T TIGR00510 158 ALDILLDAP-PDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYL------PNLPTKSGIMVGL--GETNEEIKQTL 228 (302)
T ss_pred HHHHHHHcC-chhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhC------CCCeecceEEEEC--CCCHHHHHHHH
Confidence 455555443 3433332 44444455557777777777776642 5666777777777 23344556666
Q ss_pred HHhhhc
Q 026993 214 REFCWV 219 (229)
Q Consensus 214 ~e~~~~ 219 (229)
+.+++.
T Consensus 229 ~~Lrel 234 (302)
T TIGR00510 229 KDLRDH 234 (302)
T ss_pred HHHHhc
Confidence 666554
No 416
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.39 E-value=7.6e+02 Score=24.66 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHhhhCC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 130 NGLTGEVDRLIGELEEID--------------GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g--------------~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
.|.+.+|..++++....| ..+....-.|+.++.+ |+...+++++++|...|..
T Consensus 211 ~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 211 AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 467777777776544322 1233445566776655 8899999999999999875
No 417
>PLN03025 replication factor C subunit; Provisional
Probab=20.27 E-value=5.7e+02 Score=22.14 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
....-..++.+. ..+++++|+..+.+|...|.. |..+.. .|...+.
T Consensus 224 ~~~~i~~~i~~~-~~~~~~~a~~~l~~ll~~g~~----~~~Il~-~l~~~~~ 269 (319)
T PLN03025 224 HPLHVKNIVRNC-LKGKFDDACDGLKQLYDLGYS----PTDIIT-TLFRVVK 269 (319)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC----HHHHHH-HHHHHHH
Confidence 334445566654 468999999999999999986 665444 3444443
No 418
>PHA02053 hypothetical protein
Probab=20.23 E-value=1.5e+02 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.0
Q ss_pred CCcccCCCCHHHHHHHHHHHHh
Q 026993 43 PLVKGRILSTEAIQAVQFLKRA 64 (229)
Q Consensus 43 ~~~~~r~l~~ea~~~~~~l~~~ 64 (229)
..|.||...+.|..+|+....-
T Consensus 15 r~~~gri~e~kak~iIe~Ya~k 36 (115)
T PHA02053 15 RCWSGRITEPKAKAIIEKYASK 36 (115)
T ss_pred HHhccccCcHHHHHHHHHHHHH
Confidence 4567888888898888887653
No 419
>cd08334 DED_Caspase_8_10_repeat2 Death effector domain, repeat 2, of initator caspases 8 and 10. Death Effector Domain (DED) found in caspase-8 and caspase-10, repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis, and they play partially redundant roles. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. They contain two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains foun
Probab=20.14 E-value=2.2e+02 Score=19.84 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
....+.++|.+|.+.|.- .||...| |-.-|... +.+.+.+|
T Consensus 38 ~~~s~ldlf~~Lek~~~l---~~~nl~~--L~elL~~i-r~dLl~~I 78 (83)
T cd08334 38 DNKTLLDVFVEMEKQGLL---GEDNLDE--LKRILKSL-DKKLAKKI 78 (83)
T ss_pred ccCCHHHHHHHHHHcCCC---CCccHHH--HHHHHHHH-HHHHHHHH
Confidence 334678888888888764 2654443 44444444 55555554
No 420
>PRK12928 lipoyl synthase; Provisional
Probab=20.09 E-value=1.2e+02 Score=26.48 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.+....++....++..++++...+.| |+..+-+.+|-|+ ....++-.+.+..+.+.|
T Consensus 176 ~vl~~m~r~~t~e~~le~l~~ak~~g-p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 176 RLQKAVRRGADYQRSLDLLARAKELA-PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhC-CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 34444444444555555555444432 4444444555554 223444444444444443
Done!