Query 026993
Match_columns 229
No_of_seqs 234 out of 1812
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.1E-33 227.3 20.1 151 52-219 43-204 (501)
2 4g26_A Pentatricopeptide repea 99.9 5E-27 1.7E-31 217.1 18.0 128 87-219 31-169 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2.6E-25 9E-30 216.4 9.0 123 85-212 130-258 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 6.6E-23 2.3E-27 199.6 13.8 100 116-219 126-230 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 2E-12 6.9E-17 118.3 19.9 127 87-219 378-504 (597)
6 2xpi_A Anaphase-promoting comp 99.5 2.8E-12 9.4E-17 117.4 20.3 129 87-220 412-546 (597)
7 2fo7_A Synthetic consensus TPR 99.2 1.5E-09 5.2E-14 78.4 18.1 128 88-221 7-134 (136)
8 1w3b_A UDP-N-acetylglucosamine 99.1 8E-09 2.7E-13 89.7 17.3 128 88-221 243-370 (388)
9 3as5_A MAMA; tetratricopeptide 99.0 6.8E-08 2.3E-12 73.6 17.7 130 87-222 47-176 (186)
10 1w3b_A UDP-N-acetylglucosamine 99.0 5.7E-08 2E-12 84.2 18.8 126 91-222 212-337 (388)
11 2y4t_A DNAJ homolog subfamily 99.0 2.9E-08 9.8E-13 87.3 17.0 128 89-222 150-289 (450)
12 2vq2_A PILW, putative fimbrial 98.9 1.3E-07 4.6E-12 74.5 19.1 129 87-221 47-178 (225)
13 2y4t_A DNAJ homolog subfamily 98.9 6.4E-08 2.2E-12 85.0 18.2 129 87-222 31-175 (450)
14 2ho1_A Type 4 fimbrial biogene 98.9 1.7E-07 5.7E-12 76.0 19.1 128 88-221 77-206 (252)
15 2vq2_A PILW, putative fimbrial 98.9 1.9E-07 6.6E-12 73.6 18.7 133 87-223 81-215 (225)
16 2q7f_A YRRB protein; TPR, prot 98.9 1.4E-07 4.8E-12 75.6 17.3 129 88-222 97-225 (243)
17 3as5_A MAMA; tetratricopeptide 98.9 8.4E-08 2.9E-12 73.1 15.2 129 88-222 14-142 (186)
18 2q7f_A YRRB protein; TPR, prot 98.9 2.4E-07 8.1E-12 74.2 18.1 130 87-222 62-191 (243)
19 2ho1_A Type 4 fimbrial biogene 98.9 1.7E-07 5.7E-12 76.0 17.1 131 88-223 111-242 (252)
20 3mkr_A Coatomer subunit epsilo 98.8 3.3E-07 1.1E-11 77.9 17.5 128 88-222 136-267 (291)
21 1xnf_A Lipoprotein NLPI; TPR, 98.8 5.2E-07 1.8E-11 73.6 17.1 129 87-222 48-176 (275)
22 3hym_B Cell division cycle pro 98.8 1.5E-06 5.1E-11 72.4 19.9 126 88-219 96-222 (330)
23 4eqf_A PEX5-related protein; a 98.7 7E-07 2.4E-11 76.5 18.1 57 89-146 106-162 (365)
24 3cv0_A Peroxisome targeting si 98.7 4.6E-07 1.6E-11 75.5 16.1 125 92-222 148-272 (327)
25 4eqf_A PEX5-related protein; a 98.7 1.6E-07 5.6E-12 80.5 13.3 126 90-220 185-311 (365)
26 1fch_A Peroxisomal targeting s 98.7 3.6E-07 1.2E-11 77.8 14.6 128 89-221 188-316 (368)
27 1fch_A Peroxisomal targeting s 98.7 2E-06 6.8E-11 73.2 18.9 126 88-219 104-280 (368)
28 3cv0_A Peroxisome targeting si 98.7 1.1E-06 3.7E-11 73.2 16.7 126 88-218 178-314 (327)
29 1na0_A Designed protein CTPR3; 98.7 2.7E-06 9.4E-11 60.3 16.7 92 89-181 16-107 (125)
30 3hym_B Cell division cycle pro 98.7 1.2E-06 4.1E-11 73.1 16.6 131 87-223 61-192 (330)
31 1na0_A Designed protein CTPR3; 98.7 1.3E-06 4.3E-11 62.1 14.3 101 117-222 9-109 (125)
32 3mkr_A Coatomer subunit epsilo 98.7 1.1E-06 3.6E-11 74.7 16.1 122 90-223 109-233 (291)
33 2fo7_A Synthetic consensus TPR 98.6 1E-06 3.5E-11 63.1 13.3 99 119-222 3-101 (136)
34 3uq3_A Heat shock protein STI1 98.6 1.6E-06 5.5E-11 69.7 15.6 127 88-220 85-237 (258)
35 3uq3_A Heat shock protein STI1 98.6 2.5E-06 8.6E-11 68.5 16.2 130 87-222 43-205 (258)
36 3vtx_A MAMA; tetratricopeptide 98.6 9.2E-06 3.2E-10 62.7 18.8 128 87-220 44-171 (184)
37 1xnf_A Lipoprotein NLPI; TPR, 98.6 5.7E-07 2E-11 73.3 12.3 125 94-223 17-144 (275)
38 1a17_A Serine/threonine protei 98.6 4.3E-06 1.5E-10 62.8 16.3 125 88-218 19-145 (166)
39 3u4t_A TPR repeat-containing p 98.6 2.3E-06 7.7E-11 69.9 15.7 124 90-219 11-137 (272)
40 3vtx_A MAMA; tetratricopeptide 98.6 1E-05 3.4E-10 62.5 18.6 128 90-223 13-140 (184)
41 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.9E-06 9.9E-11 67.0 15.1 128 90-221 14-152 (213)
42 2pl2_A Hypothetical conserved 98.5 6.6E-06 2.2E-10 66.3 17.1 124 91-221 48-182 (217)
43 3ieg_A DNAJ homolog subfamily 98.5 7.3E-06 2.5E-10 68.7 18.0 92 125-221 128-219 (359)
44 3ieg_A DNAJ homolog subfamily 98.5 1.3E-05 4.4E-10 67.2 19.3 128 89-222 127-266 (359)
45 2gw1_A Mitochondrial precursor 98.5 4.5E-06 1.5E-10 74.0 15.2 126 90-221 346-480 (514)
46 2vyi_A SGTA protein; chaperone 98.4 1.6E-05 5.6E-10 56.6 15.5 112 88-205 18-129 (131)
47 2pl2_A Hypothetical conserved 98.4 1.3E-05 4.5E-10 64.5 16.4 126 89-220 12-148 (217)
48 2e2e_A Formate-dependent nitri 98.4 5.1E-06 1.7E-10 64.1 13.2 124 94-223 22-148 (177)
49 4i17_A Hypothetical protein; T 98.4 4.5E-05 1.5E-09 61.0 19.2 128 89-222 14-149 (228)
50 3fp2_A TPR repeat-containing p 98.4 7.3E-06 2.5E-10 73.3 15.8 123 91-219 285-407 (537)
51 3nf1_A KLC 1, kinesin light ch 98.4 2.4E-06 8E-11 70.6 11.4 130 88-220 117-308 (311)
52 2gw1_A Mitochondrial precursor 98.4 5.5E-06 1.9E-10 73.4 13.8 124 89-219 244-367 (514)
53 3fp2_A TPR repeat-containing p 98.4 1.1E-05 3.9E-10 72.0 15.8 127 90-223 251-377 (537)
54 3edt_B KLC 2, kinesin light ch 98.4 5.7E-06 1.9E-10 67.0 12.6 129 88-219 91-281 (283)
55 1elw_A TPR1-domain of HOP; HOP 98.3 2.4E-05 8.3E-10 54.7 13.9 91 89-180 11-101 (118)
56 2ond_A Cleavage stimulation fa 98.3 2.8E-05 9.5E-10 65.8 16.3 129 90-223 142-274 (308)
57 2kck_A TPR repeat; tetratricop 98.3 1.1E-05 3.8E-10 56.1 11.6 102 117-223 6-110 (112)
58 3edt_B KLC 2, kinesin light ch 98.3 7.5E-06 2.5E-10 66.3 12.2 128 88-219 49-198 (283)
59 3u4t_A TPR repeat-containing p 98.3 4.3E-05 1.5E-09 62.1 16.5 129 89-222 44-174 (272)
60 2vsy_A XCC0866; transferase, g 98.3 4.4E-05 1.5E-09 70.1 18.3 130 88-223 29-161 (568)
61 4gyw_A UDP-N-acetylglucosamine 98.3 4.8E-05 1.7E-09 72.9 19.1 125 88-219 49-174 (723)
62 3nf1_A KLC 1, kinesin light ch 98.3 1E-05 3.4E-10 66.8 12.6 127 90-219 35-182 (311)
63 2vyi_A SGTA protein; chaperone 98.3 3.1E-05 1.1E-09 55.1 13.8 102 116-222 11-112 (131)
64 2lni_A Stress-induced-phosphop 98.3 3E-05 1E-09 55.7 13.6 111 88-204 22-132 (133)
65 2ond_A Cleavage stimulation fa 98.3 4.2E-05 1.5E-09 64.6 16.0 126 87-219 104-232 (308)
66 2lni_A Stress-induced-phosphop 98.2 2E-05 6.9E-10 56.7 12.0 102 115-221 14-115 (133)
67 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00026 9.1E-09 56.9 19.1 133 87-226 46-220 (225)
68 3mv2_B Coatomer subunit epsilo 98.2 3.9E-05 1.3E-09 66.4 14.6 124 87-218 105-239 (310)
69 1elw_A TPR1-domain of HOP; HOP 98.2 0.00024 8.1E-09 49.5 16.2 103 116-223 3-105 (118)
70 4abn_A Tetratricopeptide repea 98.2 3E-05 1E-09 70.2 14.1 120 92-218 112-249 (474)
71 1b89_A Protein (clathrin heavy 98.2 2.1E-07 7.1E-12 84.4 -0.4 112 85-217 64-175 (449)
72 1elr_A TPR2A-domain of HOP; HO 98.2 4.9E-05 1.7E-09 54.2 12.4 103 88-197 10-119 (131)
73 1elr_A TPR2A-domain of HOP; HO 98.1 4.9E-05 1.7E-09 54.2 11.9 102 118-221 5-110 (131)
74 3gyz_A Chaperone protein IPGC; 98.1 5.2E-05 1.8E-09 58.3 12.4 93 88-181 42-134 (151)
75 4gco_A Protein STI-1; structur 98.1 0.00013 4.3E-09 53.9 14.0 89 91-180 22-110 (126)
76 1p5q_A FKBP52, FK506-binding p 98.1 0.00012 4.2E-09 63.1 16.0 121 89-215 154-290 (336)
77 4gco_A Protein STI-1; structur 98.1 0.00012 4.3E-09 53.9 13.9 100 119-223 15-114 (126)
78 2dba_A Smooth muscle cell asso 98.1 0.00017 5.9E-09 52.7 14.6 92 87-180 33-128 (148)
79 2vsy_A XCC0866; transferase, g 98.1 6.3E-05 2.1E-09 69.0 14.7 122 95-222 2-123 (568)
80 3urz_A Uncharacterized protein 98.1 0.00024 8.1E-09 56.6 16.2 124 92-222 64-189 (208)
81 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00022 7.5E-09 54.2 15.4 93 88-181 17-109 (164)
82 4gyw_A UDP-N-acetylglucosamine 98.1 0.00013 4.5E-09 69.9 17.1 127 90-222 17-143 (723)
83 3sz7_A HSC70 cochaperone (SGT) 98.1 9.9E-05 3.4E-09 56.2 13.4 103 116-223 10-112 (164)
84 2vgx_A Chaperone SYCD; alterna 98.1 7.5E-05 2.5E-09 56.7 12.6 92 88-180 27-118 (148)
85 3q49_B STIP1 homology and U bo 98.1 0.00021 7.1E-09 52.0 14.5 91 88-179 15-105 (137)
86 2h6f_A Protein farnesyltransfe 98.1 9.9E-05 3.4E-09 65.3 15.0 122 92-219 107-229 (382)
87 1b89_A Protein (clathrin heavy 98.1 8.3E-06 2.8E-10 73.9 7.7 111 84-217 124-234 (449)
88 3qky_A Outer membrane assembly 98.1 0.00021 7.3E-09 58.3 15.7 128 88-222 21-180 (261)
89 2kck_A TPR repeat; tetratricop 98.0 0.00011 3.7E-09 50.9 12.1 91 90-181 14-107 (112)
90 3gyz_A Chaperone protein IPGC; 98.0 0.0003 1E-08 54.0 15.5 101 117-222 36-136 (151)
91 2xcb_A PCRH, regulatory protei 98.0 8.3E-05 2.8E-09 55.4 11.9 92 88-180 24-115 (142)
92 4abn_A Tetratricopeptide repea 98.0 6.4E-05 2.2E-09 68.0 13.3 119 97-222 83-211 (474)
93 3qky_A Outer membrane assembly 98.0 0.00042 1.4E-08 56.5 16.9 132 88-223 58-228 (261)
94 1a17_A Serine/threonine protei 98.0 0.00025 8.6E-09 52.9 14.4 100 118-222 14-113 (166)
95 4i17_A Hypothetical protein; T 98.0 0.00018 6.2E-09 57.3 14.3 128 89-223 49-213 (228)
96 3qou_A Protein YBBN; thioredox 98.0 0.00018 6.3E-09 60.4 14.9 128 87-221 122-250 (287)
97 3upv_A Heat shock protein STI1 98.0 0.0002 6.8E-09 51.7 13.0 91 89-180 11-101 (126)
98 3u3w_A Transcriptional activat 98.0 0.00026 8.9E-09 59.2 15.3 128 88-219 81-225 (293)
99 4ga2_A E3 SUMO-protein ligase 98.0 0.00033 1.1E-08 53.0 14.5 110 88-204 37-148 (150)
100 4ga2_A E3 SUMO-protein ligase 98.0 2.9E-05 9.8E-10 59.0 8.3 122 94-222 9-132 (150)
101 3n71_A Histone lysine methyltr 98.0 0.00024 8.2E-09 65.1 15.8 130 87-219 314-464 (490)
102 3upv_A Heat shock protein STI1 98.0 0.00043 1.5E-08 49.9 14.2 98 118-220 5-102 (126)
103 2xcb_A PCRH, regulatory protei 97.9 0.00039 1.3E-08 51.7 13.9 100 117-221 18-117 (142)
104 3q49_B STIP1 homology and U bo 97.9 0.00052 1.8E-08 49.8 14.2 102 115-221 7-108 (137)
105 3ro2_A PINS homolog, G-protein 97.9 0.00028 9.7E-09 58.0 14.2 130 88-220 189-333 (338)
106 2r5s_A Uncharacterized protein 97.9 0.00024 8.2E-09 54.8 12.9 77 136-215 93-169 (176)
107 2xev_A YBGF; tetratricopeptide 97.9 0.0004 1.4E-08 49.8 13.3 93 87-181 7-106 (129)
108 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00041 1.4E-08 54.4 14.3 116 90-210 46-176 (198)
109 2xev_A YBGF; tetratricopeptide 97.9 0.001 3.4E-08 47.6 15.3 98 122-223 7-109 (129)
110 1qqe_A Vesicular transport pro 97.9 0.00071 2.4E-08 56.7 16.5 132 87-221 82-230 (292)
111 3ro3_A PINS homolog, G-protein 97.9 0.00085 2.9E-08 49.0 15.1 128 89-219 16-158 (164)
112 2vgx_A Chaperone SYCD; alterna 97.9 0.00055 1.9E-08 51.8 13.9 101 116-221 20-120 (148)
113 2dba_A Smooth muscle cell asso 97.8 0.001 3.6E-08 48.4 14.8 103 115-223 26-132 (148)
114 2ooe_A Cleavage stimulation fa 97.8 0.00067 2.3E-08 61.5 16.5 126 87-220 326-455 (530)
115 3sf4_A G-protein-signaling mod 97.8 0.00065 2.2E-08 57.9 15.5 129 88-219 193-336 (406)
116 1wao_1 Serine/threonine protei 97.8 0.00014 4.9E-09 66.0 11.8 120 92-215 16-135 (477)
117 4a1s_A PINS, partner of inscut 97.8 0.00024 8.2E-09 61.3 12.7 129 88-219 229-372 (411)
118 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0012 4.1E-08 51.5 15.6 94 87-181 42-151 (213)
119 3gw4_A Uncharacterized protein 97.8 0.00034 1.1E-08 54.1 12.2 125 90-219 34-176 (203)
120 3gw4_A Uncharacterized protein 97.8 0.00019 6.5E-09 55.5 10.6 121 93-218 3-135 (203)
121 2e2e_A Formate-dependent nitri 97.8 0.0007 2.4E-08 51.7 13.3 93 88-181 50-145 (177)
122 2h6f_A Protein farnesyltransfe 97.8 0.00047 1.6E-08 60.9 13.9 126 89-220 138-270 (382)
123 1hxi_A PEX5, peroxisome target 97.8 0.00055 1.9E-08 49.9 12.0 94 86-180 21-114 (121)
124 2pzi_A Probable serine/threoni 97.8 0.0004 1.4E-08 65.7 14.0 127 88-221 439-565 (681)
125 1ouv_A Conserved hypothetical 97.7 0.0042 1.4E-07 50.6 18.5 119 89-219 45-179 (273)
126 2qfc_A PLCR protein; TPR, HTH, 97.7 0.0025 8.7E-08 53.0 17.3 132 86-219 79-225 (293)
127 1hxi_A PEX5, peroxisome target 97.7 0.00063 2.1E-08 49.6 11.9 97 120-221 20-116 (121)
128 2ooe_A Cleavage stimulation fa 97.7 0.00058 2E-08 61.9 13.9 129 88-221 362-494 (530)
129 3ro2_A PINS homolog, G-protein 97.7 0.00059 2E-08 56.0 12.8 126 89-218 12-171 (338)
130 4a1s_A PINS, partner of inscut 97.7 0.00041 1.4E-08 59.8 11.8 127 88-218 54-211 (411)
131 4gcn_A Protein STI-1; structur 97.7 0.0023 7.8E-08 46.9 14.1 90 90-180 16-112 (127)
132 2qfc_A PLCR protein; TPR, HTH, 97.7 0.0011 3.8E-08 55.3 13.8 124 91-217 124-264 (293)
133 1qqe_A Vesicular transport pro 97.6 0.0016 5.5E-08 54.5 14.7 131 89-222 44-190 (292)
134 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.0019 6.4E-08 51.8 14.5 129 89-223 11-180 (225)
135 3mv2_B Coatomer subunit epsilo 97.6 0.0011 3.8E-08 57.2 13.8 127 87-222 141-285 (310)
136 3k9i_A BH0479 protein; putativ 97.6 0.00011 3.9E-09 52.8 6.2 102 95-200 3-107 (117)
137 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0015 5.2E-08 58.7 14.1 117 89-211 275-406 (457)
138 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0031 1.1E-07 49.1 14.3 101 117-222 38-154 (198)
139 3k9i_A BH0479 protein; putativ 97.5 0.00017 5.8E-09 51.9 6.2 88 129-221 2-92 (117)
140 3rkv_A Putative peptidylprolyl 97.5 0.0023 7.9E-08 48.2 13.0 91 90-181 19-127 (162)
141 2r5s_A Uncharacterized protein 97.5 0.00098 3.3E-08 51.2 11.0 129 87-222 11-140 (176)
142 3ulq_A Response regulator aspa 97.5 0.0065 2.2E-07 52.2 17.4 127 89-219 150-293 (383)
143 4gcn_A Protein STI-1; structur 97.5 0.0014 4.8E-08 48.0 11.0 99 119-219 10-112 (127)
144 3qou_A Protein YBBN; thioredox 97.5 0.0007 2.4E-08 56.8 10.3 124 87-215 156-280 (287)
145 2c2l_A CHIP, carboxy terminus 97.5 0.0018 6.1E-08 54.2 12.7 92 88-180 10-101 (281)
146 3sf4_A G-protein-signaling mod 97.5 0.0029 9.8E-08 53.8 14.3 125 90-218 17-175 (406)
147 1ihg_A Cyclophilin 40; ppiase 97.5 0.003 1E-07 55.3 14.6 119 88-211 229-362 (370)
148 3u3w_A Transcriptional activat 97.5 0.0022 7.5E-08 53.4 13.1 123 92-218 125-265 (293)
149 1ouv_A Conserved hypothetical 97.5 0.018 6.2E-07 46.7 18.4 118 90-219 82-215 (273)
150 1p5q_A FKBP52, FK506-binding p 97.4 0.0025 8.7E-08 54.7 13.4 101 116-222 146-262 (336)
151 2ifu_A Gamma-SNAP; membrane fu 97.4 0.004 1.4E-07 52.4 14.3 125 88-217 82-222 (307)
152 3rkv_A Putative peptidylprolyl 97.4 0.0019 6.4E-08 48.7 11.2 99 119-222 13-129 (162)
153 2l6j_A TPR repeat-containing p 97.4 0.00021 7.2E-09 49.8 5.3 65 116-180 3-67 (111)
154 2c2l_A CHIP, carboxy terminus 97.4 0.0049 1.7E-07 51.4 14.5 56 89-145 45-100 (281)
155 4f3v_A ESX-1 secretion system 97.4 0.0014 4.8E-08 55.8 10.8 128 87-222 107-240 (282)
156 3urz_A Uncharacterized protein 97.4 0.0032 1.1E-07 49.9 12.2 113 86-205 8-137 (208)
157 3q15_A PSP28, response regulat 97.3 0.014 4.7E-07 50.2 17.0 127 89-219 148-290 (378)
158 2pzi_A Probable serine/threoni 97.3 0.0011 3.9E-08 62.6 10.8 123 93-222 402-532 (681)
159 2kat_A Uncharacterized protein 97.3 0.0023 7.7E-08 45.4 9.9 98 101-202 4-101 (115)
160 1na3_A Designed protein CTPR2; 97.2 0.0093 3.2E-07 39.5 11.3 81 117-202 9-89 (91)
161 1hz4_A MALT regulatory protein 97.2 0.016 5.4E-07 49.3 15.3 127 90-219 61-203 (373)
162 1hz4_A MALT regulatory protein 97.1 0.035 1.2E-06 47.1 17.4 89 92-180 103-203 (373)
163 2kat_A Uncharacterized protein 97.1 0.0039 1.3E-07 44.1 9.5 81 134-219 2-82 (115)
164 3qwp_A SET and MYND domain-con 97.1 0.0059 2E-07 54.8 12.2 94 84-178 289-398 (429)
165 3ulq_A Response regulator aspa 97.1 0.017 5.8E-07 49.6 14.6 125 91-218 112-252 (383)
166 2ifu_A Gamma-SNAP; membrane fu 97.0 0.012 4E-07 49.5 13.0 126 89-219 43-184 (307)
167 3ro3_A PINS homolog, G-protein 97.0 0.006 2.1E-07 44.3 9.6 99 118-219 10-118 (164)
168 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0016 5.5E-08 56.1 7.4 125 90-222 187-331 (338)
169 1wao_1 Serine/threonine protei 96.9 0.0074 2.5E-07 54.6 11.8 93 126-223 15-107 (477)
170 3q15_A PSP28, response regulat 96.9 0.018 6.1E-07 49.4 13.7 124 92-218 111-250 (378)
171 1ihg_A Cyclophilin 40; ppiase 96.9 0.011 3.7E-07 51.7 12.1 99 119-222 225-339 (370)
172 3qww_A SET and MYND domain-con 96.9 0.013 4.6E-07 52.6 12.8 84 94-178 310-409 (433)
173 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.018 6E-07 51.6 13.7 101 117-222 268-383 (457)
174 3ma5_A Tetratricopeptide repea 96.9 0.0066 2.3E-07 42.3 8.6 84 116-202 6-89 (100)
175 2l6j_A TPR repeat-containing p 96.7 0.0037 1.3E-07 43.2 6.2 85 88-174 10-101 (111)
176 2hr2_A Hypothetical protein; a 96.7 0.044 1.5E-06 42.5 13.0 90 88-179 17-130 (159)
177 3qww_A SET and MYND domain-con 96.7 0.0085 2.9E-07 53.9 10.1 88 129-219 310-411 (433)
178 1na3_A Designed protein CTPR2; 96.7 0.047 1.6E-06 35.9 11.6 75 89-164 16-90 (91)
179 3n71_A Histone lysine methyltr 96.7 0.012 4.2E-07 53.7 11.0 91 125-218 317-421 (490)
180 4b4t_Q 26S proteasome regulato 96.6 0.14 4.6E-06 44.1 17.2 132 85-218 58-203 (434)
181 2hr2_A Hypothetical protein; a 96.6 0.021 7.2E-07 44.4 10.7 96 120-219 14-131 (159)
182 3qwp_A SET and MYND domain-con 96.6 0.02 7E-07 51.2 11.7 94 123-219 293-400 (429)
183 4g1t_A Interferon-induced prot 96.5 0.031 1.1E-06 48.8 12.5 50 96-146 227-276 (472)
184 4g1t_A Interferon-induced prot 96.5 0.099 3.4E-06 45.5 15.2 130 88-222 253-404 (472)
185 2if4_A ATFKBP42; FKBP-like, al 96.5 0.015 5.2E-07 49.9 9.7 99 118-222 180-296 (338)
186 4e6h_A MRNA 3'-END-processing 96.5 0.041 1.4E-06 52.2 13.4 135 86-223 438-574 (679)
187 4e6h_A MRNA 3'-END-processing 96.4 0.087 3E-06 50.0 15.3 126 88-221 384-535 (679)
188 1xi4_A Clathrin heavy chain; a 96.3 0.064 2.2E-06 54.9 14.5 108 84-214 1197-1304(1630)
189 3rjv_A Putative SEL1 repeat pr 96.3 0.3 1E-05 38.4 15.8 116 94-218 30-157 (212)
190 3ma5_A Tetratricopeptide repea 96.2 0.034 1.2E-06 38.4 8.9 65 150-219 6-70 (100)
191 1xi4_A Clathrin heavy chain; a 96.1 0.12 4E-06 53.1 14.9 74 88-168 1111-1184(1630)
192 3dra_A Protein farnesyltransfe 96.0 0.085 2.9E-06 45.1 11.9 31 188-218 256-286 (306)
193 2kc7_A BFR218_protein; tetratr 96.0 0.047 1.6E-06 36.9 8.4 57 90-147 8-65 (99)
194 4b4t_Q 26S proteasome regulato 95.9 0.07 2.4E-06 46.0 11.3 127 89-219 11-164 (434)
195 2kc7_A BFR218_protein; tetratr 95.9 0.018 6.1E-07 39.2 6.0 58 124-181 7-65 (99)
196 1zu2_A Mitochondrial import re 95.7 0.11 3.6E-06 40.3 10.2 114 92-219 12-147 (158)
197 3mkq_A Coatomer beta'-subunit; 95.7 0.16 5.6E-06 47.5 13.5 85 116-218 680-764 (814)
198 2xm6_A Protein corresponding t 95.6 1.1 3.7E-05 39.6 18.0 48 130-179 200-251 (490)
199 2xm6_A Protein corresponding t 95.6 0.95 3.3E-05 40.0 17.6 112 96-219 310-432 (490)
200 1dce_A Protein (RAB geranylger 95.6 1.2 4E-05 41.1 18.6 118 98-221 89-223 (567)
201 3rjv_A Putative SEL1 repeat pr 95.4 0.24 8.3E-06 38.9 11.7 107 101-220 5-119 (212)
202 1klx_A Cysteine rich protein B 95.3 0.57 1.9E-05 34.3 13.6 109 97-219 10-126 (138)
203 4f3v_A ESX-1 secretion system 95.2 0.064 2.2E-06 45.5 7.9 90 121-218 106-199 (282)
204 3dra_A Protein farnesyltransfe 94.6 1.7 5.8E-05 36.9 15.6 116 97-218 84-214 (306)
205 3e4b_A ALGK; tetratricopeptide 93.7 0.82 2.8E-05 40.4 12.1 92 119-217 178-278 (452)
206 3dss_A Geranylgeranyl transfer 93.7 3.1 0.00011 35.8 15.4 118 98-221 90-224 (331)
207 1zu2_A Mitochondrial import re 93.6 0.21 7.3E-06 38.6 7.0 92 127-223 12-124 (158)
208 3ly7_A Transcriptional activat 93.6 2 6.7E-05 37.7 14.0 117 97-221 214-341 (372)
209 2uy1_A Cleavage stimulation fa 93.5 1.2 4.3E-05 40.1 13.2 121 87-219 291-413 (493)
210 3q7a_A Farnesyltransferase alp 93.4 2.4 8.1E-05 36.8 14.2 120 94-219 100-237 (349)
211 3e4b_A ALGK; tetratricopeptide 92.9 3.2 0.00011 36.6 14.8 114 92-217 186-314 (452)
212 1dce_A Protein (RAB geranylger 92.8 4.8 0.00017 36.9 16.3 125 89-220 35-174 (567)
213 3dss_A Geranylgeranyl transfer 92.6 4.3 0.00015 34.8 14.6 120 97-222 125-270 (331)
214 1pc2_A Mitochondria fission pr 92.1 1.6 5.6E-05 33.3 10.1 65 115-180 30-100 (152)
215 3bee_A Putative YFRE protein; 91.7 1.6 5.4E-05 30.0 9.0 66 116-181 5-73 (93)
216 2v5f_A Prolyl 4-hydroxylase su 90.9 2 6.8E-05 29.7 9.0 64 117-180 5-75 (104)
217 3q7a_A Farnesyltransferase alp 90.9 7.4 0.00025 33.7 15.1 125 87-218 58-195 (349)
218 2ff4_A Probable regulatory pro 90.8 1.6 5.4E-05 38.2 10.0 71 122-196 176-251 (388)
219 3mkq_A Coatomer beta'-subunit; 90.5 0.94 3.2E-05 42.2 8.9 111 87-218 634-751 (814)
220 2v5f_A Prolyl 4-hydroxylase su 90.0 2.2 7.5E-05 29.4 8.5 68 83-151 6-79 (104)
221 3mkq_B Coatomer subunit alpha; 89.7 6.1 0.00021 30.9 14.5 52 154-218 92-143 (177)
222 3ly7_A Transcriptional activat 88.6 3.2 0.00011 36.4 10.1 73 115-194 275-347 (372)
223 2uy1_A Cleavage stimulation fa 87.6 4.1 0.00014 36.6 10.6 80 95-179 333-412 (493)
224 3u64_A Protein TP_0956; tetrat 87.6 5.3 0.00018 34.0 10.5 93 117-220 199-299 (301)
225 2p58_C Putative type III secre 87.3 4.4 0.00015 29.0 8.2 85 97-195 22-108 (116)
226 1pc2_A Mitochondria fission pr 87.0 6.3 0.00022 30.0 9.8 80 135-220 16-101 (152)
227 2uwj_G Type III export protein 86.1 4.3 0.00015 29.1 7.6 84 98-195 22-107 (115)
228 2ff4_A Probable regulatory pro 84.6 5 0.00017 34.9 9.3 61 153-218 173-233 (388)
229 1klx_A Cysteine rich protein B 84.5 9.3 0.00032 27.5 13.2 84 94-182 37-128 (138)
230 1nzn_A CGI-135 protein, fissio 82.4 12 0.0004 27.6 9.1 66 115-180 33-103 (126)
231 3u64_A Protein TP_0956; tetrat 81.4 6.2 0.00021 33.5 8.2 100 116-222 153-272 (301)
232 2nsz_A Programmed cell death p 78.0 7.3 0.00025 28.5 6.8 74 85-162 10-85 (129)
233 1wy6_A Hypothetical protein ST 77.1 22 0.00075 27.1 12.7 82 129-219 73-154 (172)
234 1v54_E Cytochrome C oxidase po 75.2 17 0.00059 25.9 7.6 63 133-200 26-89 (109)
235 2ion_A PDCD4, programmed cell 71.6 7.3 0.00025 29.5 5.5 104 85-204 12-118 (152)
236 3bee_A Putative YFRE protein; 70.8 21 0.00073 24.0 9.6 68 150-222 5-75 (93)
237 1wy6_A Hypothetical protein ST 70.1 34 0.0012 26.0 10.8 67 116-182 90-156 (172)
238 1nzn_A CGI-135 protein, fissio 66.7 35 0.0012 24.9 10.4 83 134-222 18-106 (126)
239 2d2s_A Exocyst complex compone 65.9 50 0.0017 26.7 9.8 94 84-179 20-119 (235)
240 4h7y_A Dual specificity protei 62.4 50 0.0017 25.2 10.9 109 85-200 16-138 (161)
241 3esl_A Checkpoint serine/threo 62.3 45 0.0015 26.5 8.5 54 130-183 92-147 (202)
242 1v54_E Cytochrome C oxidase po 61.9 21 0.0007 25.5 5.7 37 87-124 50-86 (109)
243 2nsz_A Programmed cell death p 58.9 29 0.001 25.2 6.5 64 120-183 10-75 (129)
244 3mkq_B Coatomer subunit alpha; 58.0 63 0.0022 25.0 12.7 104 91-218 14-117 (177)
245 4b4t_R RPN7, 26S proteasome re 55.6 32 0.0011 30.2 7.3 94 119-218 133-236 (429)
246 2y69_E Cytochrome C oxidase su 55.3 64 0.0022 24.2 8.5 62 134-200 70-132 (152)
247 2ion_A PDCD4, programmed cell 55.2 14 0.00047 27.9 4.2 76 119-202 11-88 (152)
248 3ygs_P Procaspase 9; apoptosis 54.2 40 0.0014 23.1 6.3 38 166-211 52-89 (97)
249 4a1g_A Mitotic checkpoint seri 52.4 25 0.00086 26.6 5.3 49 134-182 82-132 (152)
250 2d2s_A Exocyst complex compone 50.1 98 0.0034 24.9 10.9 31 115-145 89-119 (235)
251 4fhn_B Nucleoporin NUP120; pro 47.8 1E+02 0.0035 30.6 10.2 121 87-214 817-962 (1139)
252 2p1h_A APAF-1, apoptotic prote 46.8 61 0.0021 21.7 6.2 35 130-167 49-83 (94)
253 2wvi_A Mitotic checkpoint seri 46.8 38 0.0013 26.0 5.5 54 134-191 77-132 (164)
254 2y69_E Cytochrome C oxidase su 46.8 45 0.0016 25.1 5.7 37 87-124 93-129 (152)
255 4gns_B Protein CSD3, chitin bi 46.6 2E+02 0.0068 27.4 15.5 122 89-216 255-397 (754)
256 4aez_C MAD3, mitotic spindle c 45.7 38 0.0013 27.4 5.6 50 134-183 131-182 (223)
257 3eiq_C Programmed cell death p 45.6 48 0.0017 28.6 6.7 63 120-182 220-284 (358)
258 4gns_B Protein CSD3, chitin bi 45.3 54 0.0018 31.3 7.5 51 92-144 347-398 (754)
259 2zu6_B Programmed cell death p 43.1 42 0.0014 28.3 5.8 22 122-143 171-192 (307)
260 4b4t_P 26S proteasome regulato 42.4 1.7E+02 0.006 25.5 11.6 90 89-179 144-246 (445)
261 4b4t_P 26S proteasome regulato 41.9 1.8E+02 0.0061 25.5 11.0 94 121-218 141-246 (445)
262 2b7e_A PRE-mRNA processing pro 41.5 12 0.00042 23.7 1.6 33 134-166 3-37 (59)
263 3ygs_P Procaspase 9; apoptosis 41.0 46 0.0016 22.8 4.8 38 131-171 51-88 (97)
264 2p58_C Putative type III secre 40.1 34 0.0011 24.4 3.9 61 89-155 47-107 (116)
265 4fhn_B Nucleoporin NUP120; pro 40.1 1.5E+02 0.0053 29.3 10.2 113 90-208 850-989 (1139)
266 3esl_A Checkpoint serine/threo 37.6 1.5E+02 0.0051 23.4 9.6 52 98-149 95-148 (202)
267 1zbp_A Hypothetical protein VP 37.1 1.1E+02 0.0038 25.4 7.3 116 89-219 4-129 (273)
268 2uwj_G Type III export protein 34.1 33 0.0011 24.5 3.0 61 89-155 46-106 (115)
269 4a1g_A Mitotic checkpoint seri 33.9 90 0.0031 23.5 5.8 44 168-214 82-125 (152)
270 2f6m_A Suppressor protein STP2 33.0 90 0.0031 20.1 4.8 44 120-163 5-48 (65)
271 1k1a_A B-cell lymphoma 3-encod 32.8 64 0.0022 24.4 5.1 121 87-215 11-138 (241)
272 1ug3_A EIF4GI, eukaryotic prot 31.1 39 0.0013 28.7 3.7 102 85-202 14-116 (339)
273 3lxu_X Tripeptidyl-peptidase 2 30.3 4.6E+02 0.016 26.9 11.7 100 120-225 1237-1352(1354)
274 2wvi_A Mitotic checkpoint seri 30.0 1.2E+02 0.004 23.1 5.9 52 100-151 78-131 (164)
275 4b4t_R RPN7, 26S proteasome re 27.9 2.9E+02 0.01 23.8 12.6 91 87-179 136-236 (429)
276 1s6c_A KV4 potassium channel-i 26.5 1.8E+02 0.0062 20.9 7.5 85 132-219 54-152 (183)
277 1zbp_A Hypothetical protein VP 26.4 2.1E+02 0.007 23.7 7.2 57 124-180 4-60 (273)
278 2f6m_A Suppressor protein STP2 26.3 1.1E+02 0.0038 19.6 4.3 50 152-206 3-52 (65)
279 2yru_A Steroid receptor RNA ac 26.0 1.2E+02 0.004 21.8 5.0 41 139-179 48-89 (118)
280 3txn_A 26S proteasome regulato 26.0 3.2E+02 0.011 23.6 10.1 95 120-216 102-207 (394)
281 3txn_A 26S proteasome regulato 26.0 3.2E+02 0.011 23.6 11.7 90 88-178 105-208 (394)
282 3aji_A 26S proteasome non-ATPa 25.4 62 0.0021 24.5 3.7 113 89-214 10-127 (231)
283 4aez_C MAD3, mitotic spindle c 24.1 1.4E+02 0.0048 23.9 5.6 44 168-214 131-174 (223)
284 2ijq_A Hypothetical protein; s 24.0 2.4E+02 0.008 21.3 7.2 53 127-179 42-103 (161)
285 1ug3_A EIF4GI, eukaryotic prot 23.5 1.6E+02 0.0053 24.8 6.2 72 138-215 89-166 (339)
286 3l6a_A Eukaryotic translation 23.3 1.5E+02 0.0052 25.4 6.1 126 85-218 15-150 (364)
287 3eiq_C Programmed cell death p 23.2 1.2E+02 0.0041 26.1 5.4 62 152-218 218-281 (358)
288 3ezq_B Protein FADD; apoptosis 22.9 1.2E+02 0.004 21.8 4.5 45 167-218 46-91 (122)
289 1s6c_A KV4 potassium channel-i 20.4 2.4E+02 0.0083 20.2 8.2 122 85-214 41-180 (183)
290 2zu6_B Programmed cell death p 20.3 1.5E+02 0.005 24.9 5.3 74 85-162 169-244 (307)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=227.28 Aligned_cols=151 Identities=10% Similarity=0.005 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchHHhhhhhhhcHHHHHHHHHhcC---------CHHHHHHHHHHHHHH-cCCCCHHHHH
Q 026993 52 TEAIQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQG---------ECAVAVHVFSTIQRE-YQQQDLGLLT 121 (229)
Q Consensus 52 ~ea~~~~~~l~~~~~~~~~~~~~~~~~~l~~~d~~~vl~~l~~~g---------~~~~A~~vf~~m~~~-~~~pd~~ty~ 121 (229)
.+|..+++.|++. +..|+.+.+ .++|.+|++.+ .++.|.++|++|.+. +. ||.+|||
T Consensus 43 ~~A~~lf~~M~~~-Gv~pd~~ty-----------n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-Pd~~tyn 109 (501)
T 4g26_A 43 LEALRLYDEARRN-GVQLSQYHY-----------NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV-PNEATFT 109 (501)
T ss_dssp HHHHHHHHHHHHH-TCCCCHHHH-----------HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-CCHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCHhHH-----------HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-CCHHHHH
Confidence 5777777777763 455552221 24566666554 378899999999887 88 9999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+||++|++.|++++|.++|++|.+.| .||.+|||+||.+||+.|++++|.++|++|.+.|+. ||.+||++||++|
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~----Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV----PEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999997 9999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 026993 201 RRFGEEELANEVEREFCWV 219 (229)
Q Consensus 201 ~~~g~~~~A~~v~~e~~~~ 219 (229)
++.|++++|.+++++|++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999985
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5e-27 Score=217.06 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=123.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHhhhCC-CCCHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGL---------TGEVDRLIGELEEID-GGDGRGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~---------~~~A~~lf~~M~~~g-~pd~~tyn 155 (229)
.+|+.|+|.|++++|+++|++|++. +. ||.+|||+||++|++.+. +++|.++|++|.+.| .||.+|||
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5789999999999999999999988 88 999999999999998775 789999999999999 99999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+||++||+.|++++|.++|++|.+.|+. ||.+|||+||++|++.|++++|.++|++|.+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~----Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQ----PRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----CccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999997 99999999999999999999999999999886
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=216.39 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---H-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQR---E-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVR 159 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~---~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~ 159 (229)
+.++|++||+.|++++|.++|++|.+ . +. ||++|||+||+||||.|++++|.++|++|.+.| .||++|||+||+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 45789999999999999999999864 2 77 999999999999999999999999999999999 999999999999
Q ss_pred HHHHcCCH-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 160 AVVEAGSK-ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 160 ~~~~~g~~-~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
|||+.|+. ++|.++|++|.+.|+. ||.+||++++++..+.+-++..+++
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~----PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLK----LQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCC----SHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCC----CChhhcccccChhhHHHHHHHHHHh
Confidence 99999984 7899999999999997 9999999999988876655444444
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=199.63 Aligned_cols=100 Identities=9% Similarity=-0.051 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEE---ID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~---~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
-..|||+||++|||+|++++|.++|++|.+ +| .||++|||+||+|||+.|++++|.++|++|.+.|+. ||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~----PDvv 201 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT----PDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----CCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CcHH
Confidence 357999999999999999999999988764 57 999999999999999999999999999999999997 9999
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHhhhc
Q 026993 192 VGKVLSKGLRRFGE-EELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~~~~~~g~-~~~A~~v~~e~~~~ 219 (229)
|||+||+|||+.|+ .++|.++|+||.+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999999999998 57899999999875
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.49 E-value=2e-12 Score=118.31 Aligned_cols=127 Identities=9% Similarity=-0.132 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+++|+.+.+... .+..+|+.++.+|++.|++++|.++|++|.+.+..+..+|+.++.+|++.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 345677788888888888888765433 4677888888888888888888888888876654477888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|.++|++|.+..- .|..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 457 ~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQ-----YDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888877643 56788888888888888888888888887665
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.48 E-value=2.8e-12 Score=117.40 Aligned_cols=129 Identities=10% Similarity=-0.028 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+++|+.+.+... .|..+|+.++.+|.+.|++++|.++|++|.+....|..+|+.++..|++.|+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 445566667777777777776654333 4566677777777777777777777777665443356667777777777777
Q ss_pred HHHHHHHHHHHHHc----CCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 167 KESTVRIYGLMKRS----GVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 167 ~~~A~~~f~~M~~~----g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+++|.++|++|.+. |.. |+ ..+|..+..+|.+.|++++|.++++++.+..
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~----p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSN----EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC----SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhccccc----hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 77777777776554 544 66 5667777777777777777777776665543
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=1.5e-09 Score=78.42 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+.+|+.+.+... .+...|..+...+.+.|++++|..+|+++.+.+..+...|..+...|.+.|++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 44557788999999999999876544 57788999999999999999999999998876544678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.++|+++.+..- .+..++..+...+.+.|+.++|.+.++++.+..+
T Consensus 86 ~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 86 DEAIEYYQKALELDP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999988653 4678889999999999999999999999877654
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.06 E-value=8e-09 Score=89.67 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|++.|+.+.+... .+..+|+.+...|.+.|++++|...|+++.+....+..+|+.+...|.+.|++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 44556778888888888887765322 34667888888888888888888888887765444677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.+.|+++.+.. + .+..+|..+...+.+.|++++|.+.++++-+..|
T Consensus 322 ~~A~~~~~~al~~~-p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 322 EEAVRLYRKALEVF-P----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTSC-T----TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcC-C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888887643 2 4567788888888888888888888887776544
No 9
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.97 E-value=6.8e-08 Score=73.61 Aligned_cols=130 Identities=11% Similarity=0.015 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|...|+...+... .+...|..+...|.+.|++++|.+.|++..+....+...|..+...|.+.|+
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 47 HLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc
Confidence 344567789999999999999876544 5778899999999999999999999999877654467899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|++..+..- .+..++..+...+.+.|+.++|.+.+++..+..+.
T Consensus 126 ~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 126 FDEAIDSFKIALGLRP-----NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999987753 57789999999999999999999999987765433
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.96 E-value=5.7e-08 Score=84.20 Aligned_cols=126 Identities=16% Similarity=-0.006 Sum_probs=102.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|++++|+..|....+... -+..+|+.+...|.+.|++++|...|+++.+.+.-+..+|+.+...|.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666666544322 35788999999999999999999999999876533567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+.|+++.+.. + .+..+|..+...+.+.|++++|.+.++++-+..+.
T Consensus 291 ~~~~~~al~~~-p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 291 EDCYNTALRLC-P----THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHHHC-T----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHhhC-c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999998764 3 68889999999999999999999999998876554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=2.9e-08 Score=87.27 Aligned_cols=128 Identities=10% Similarity=0.017 Sum_probs=108.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|++++|+..|+.+.+... .+..+|+.+..+|.+.|++++|.+.|+++.+....+..+|+.+...|.+.|+++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3447789999999999999976555 578899999999999999999999999998655447899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVL------------SKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L------------i~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|.+.|+++.+..- .+...+..+ ...+.+.|++++|.++++++-+..+.
T Consensus 229 ~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 229 LSLSEVRECLKLDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999987542 344445555 78999999999999999998876554
No 12
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.95 E-value=1.3e-07 Score=74.49 Aligned_cols=129 Identities=7% Similarity=-0.210 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCC-CCC-HHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN-GLTGEVDRLIGELEEID-GGD-GRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~-g~~~~A~~lf~~M~~~g-~pd-~~tyn~lI~~~~~ 163 (229)
.+...+.+.|++++|++.|+...+... .+..+|..+...|.+. |++++|...|+++.+.+ .|+ ...|..+...|.+
T Consensus 47 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 47 VRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 345667789999999999998876544 5678899999999999 99999999999988744 454 5789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.|++++|.+.|.++.+..- -+...+..+...+.+.|+.++|.+++++..+..+
T Consensus 126 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp TTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999987653 4578889999999999999999999998877644
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.93 E-value=6.4e-08 Score=85.01 Aligned_cols=129 Identities=11% Similarity=-0.023 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+.+|+.+.+... .+..+|..+..+|.+.|++++|...|+++.+.+..+..+|+.+...|.+.|+
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 455678899999999999999976554 5788999999999999999999999999987653468899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHH------------HHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDE----YVGKVLSKG------------LRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~Li~~------------~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|+++.+.. |+. .++..++.. +.+.|++++|.++++++.+..+.
T Consensus 110 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998754 544 566666554 89999999999999998776544
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.92 E-value=1.7e-07 Score=75.98 Aligned_cols=128 Identities=11% Similarity=-0.044 Sum_probs=88.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC-CHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG-DGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p-d~~tyn~lI~~~~~~g 165 (229)
+...+.+.|++++|++.|+...+... .+...|..+...|.+.|++++|.+.|++..+.+ .| +...|..+...|.+.|
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 34456677778888877777665433 456677777777777788888888777776633 34 3466777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++++|.+.|.+..+..- .+..++..+...+...|+.++|.+++++..+..+
T Consensus 156 ~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp CHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777777766542 3566777777777777777777777777665443
No 15
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.91 E-value=1.9e-07 Score=73.59 Aligned_cols=133 Identities=12% Similarity=-0.076 Sum_probs=107.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 87 AALRELIRQ-GECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~-g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
.+...+.+. |++++|+..|+.+.+. ....+...|..+...|.+.|++++|...|+++.+...-+...|..+...|.+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 345567788 9999999999998762 12023678899999999999999999999998765533578899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|++++|.+.|++..+..-. .+...+..+...+...|+.+.|..+++.+.+..+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEV----LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 9999999999998875421 366778888888899999999999999987665543
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.89 E-value=1.4e-07 Score=75.59 Aligned_cols=129 Identities=11% Similarity=-0.034 Sum_probs=93.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|++.|+...+... .+...|..+...|.+.|++++|...|++..+....+...|..+...|.+.|++
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 34455667788888888877765444 46667777777888888888888888777654433566777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|.+..+..- .+..+|..+...+.+.|+.++|.+.+++..+..+.
T Consensus 176 ~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-----GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 888888877776542 45667777888888888888888888777665544
No 17
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.88 E-value=8.4e-08 Score=73.10 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=109.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+.+.+... .+...|..+...|.+.|++++|...|++..+....+...|..+...|...|++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence 34456788999999999987754333 57788999999999999999999999998765534678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|++..+..- .+...+..+...+.+.|++++|.+++++..+..+.
T Consensus 93 ~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 93 DLAVPLLIKVAEANP-----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCc-----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 999999999987653 57788899999999999999999999988776543
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.87 E-value=2.4e-07 Score=74.21 Aligned_cols=130 Identities=9% Similarity=-0.076 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+..|+...+... .+...|..+...|.+.|++++|.+.|++..+....+...|..+...|.+.|+
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 345567789999999999999876544 5788899999999999999999999999887654467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|++..+..- .+...+..+...+.+.|++++|.+++++..+..+.
T Consensus 141 ~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 141 PKLALPYLQRAVELNE-----NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999987653 47788999999999999999999999988776443
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.87 E-value=1.7e-07 Score=75.98 Aligned_cols=131 Identities=8% Similarity=0.000 Sum_probs=110.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+...+.+.|++++|++.|+...+. ....+...|..+...|.+.|++++|...|++..+....+...|..+...|.+.|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 455677899999999999998662 2203567889999999999999999999999876553357899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.++|.+.|++..+..- .+...+..+...+.+.|+.++|.++++++.+..+.+
T Consensus 191 ~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-----QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHHTTSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 9999999999987543 577788999999999999999999999998876554
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.80 E-value=3.3e-07 Score=77.92 Aligned_cols=128 Identities=11% Similarity=0.010 Sum_probs=82.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGL---LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t---y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
....+.+.|++++|.+.|+.+.+. . ||... ...++..+...|++++|..+|+++.+....+...|+.+-..|.+.
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~-~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ-D-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh-C-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 345566777777777777777553 3 44321 123334444557777777777777665433567777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhcCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL-ANEVEREFCWVPGG 222 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~-A~~v~~e~~~~~~~ 222 (229)
|++++|.+.|++..+..- -|..++.-++..+...|+.++ +.++++.+.+..|.
T Consensus 214 g~~~eA~~~l~~al~~~p-----~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDS-----GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 777777777777766532 255567777777777777765 46677766665443
No 21
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.77 E-value=5.2e-07 Score=73.57 Aligned_cols=129 Identities=12% Similarity=-0.070 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+-..+.+.|++++|+..|+...+... .+..+|..+-..|.+.|++++|...|++..+....+..+|..+-..|.+.|+
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 48 ERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence 345567789999999999999876544 5688999999999999999999999999887553367899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|+++.+.. |+...+...+..+...|+.++|.+.+++..+..+.
T Consensus 127 ~~~A~~~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDD------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 999999999998754 55555556666677889999999999776665433
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.76 E-value=1.5e-06 Score=72.43 Aligned_cols=126 Identities=9% Similarity=-0.119 Sum_probs=94.0
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+-..+...| ++++|++.|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 344556677 78888888877754333 3566788888888888888888888888776542245667778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|.+.|++..+..- .+..++..+...+...|++++|.+.+++..+.
T Consensus 175 ~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-----EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8888888888876542 46677888888888888888888888877664
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.75 E-value=7e-07 Score=76.49 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI 146 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~ 146 (229)
-..+.+.|++++|+..|+...+... .+..+|..+...|.+.|++++|...|+++.+.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 3445556666666666666544322 34556666666666666666666666665543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.73 E-value=4.6e-07 Score=75.51 Aligned_cols=125 Identities=9% Similarity=0.011 Sum_probs=108.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
+...|++++|+..|+...+... .+..++..+...|.+.|++++|...|++..+....+..+|..+...|.+.|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5567788999999999876554 578899999999999999999999999987655335789999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+.|++..+..- .+..+|..+...+.+.|++++|.+.+++..+..+.
T Consensus 227 ~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 227 DAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999987653 46788999999999999999999999988776443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.72 E-value=1.6e-07 Score=80.50 Aligned_cols=126 Identities=10% Similarity=-0.068 Sum_probs=106.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
..+.+.|++++|+..|+.+.+... ..+..+|+.+...|.+.|++++|...|++..+....+..+|+.+...|.+.|+++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 355667899999999999877533 1268899999999999999999999999987765346889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+|.+.|++..+..- -+..+|..+...+.+.|++++|.+.+++.-+..
T Consensus 265 ~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 265 EAVEAYTRALEIQP-----GFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999988642 458889999999999999999999999877653
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.70 E-value=3.6e-07 Score=77.85 Aligned_cols=128 Identities=13% Similarity=-0.037 Sum_probs=108.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+..+.+.|++++|+..|+.+.+... .++..+|..+...|.+.|++++|...|++..+....+..+|+.+...|.+.|++
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 3444577899999999999876532 126889999999999999999999999998765433578999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.+.|++..+..- .+..+|..+...+.+.|++++|.+.+++..+..+
T Consensus 268 ~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 268 EEAVAAYRRALELQP-----GYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999987642 4678999999999999999999999998776533
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.69 E-value=2e-06 Score=73.21 Aligned_cols=126 Identities=10% Similarity=0.000 Sum_probs=71.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-C----------------
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-G-G---------------- 149 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~-p---------------- 149 (229)
+-..+.+.|++++|+..|+...+... .+..+|..+...|.+.|++++|.+.|+++.+.. . +
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhccc
Confidence 34445566777777777766654433 356666777777777777777777777666544 1 1
Q ss_pred ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 150 ---------------------------------DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 150 ---------------------------------d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
+..+|+.+...|.+.|++++|.+.|++..+..- .+..+|..+
T Consensus 183 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l 257 (368)
T 1fch_A 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKL 257 (368)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CCHHHHHHH
Confidence 234455555555555555555555555554421 234555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 026993 197 SKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
...+.+.|++++|.+.+++.-+.
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555554443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.68 E-value=1.1e-06 Score=73.23 Aligned_cols=126 Identities=12% Similarity=-0.039 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+..|+...+... .+..+|..+...|.+.|++++|...|++..+....+..+|..+...|.+.|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 44567789999999999999876544 56788999999999999999999999998765433678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 168 ESTVRIYGLMKRSGVGCSWKV-----------DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~P-----------d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++|.+.|++..+..-. . +..+|..+...+.+.|+.++|.+++++.-+
T Consensus 257 ~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVG----GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTT----SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCc----cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999998765321 1 478899999999999999999999875433
No 29
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=2.7e-06 Score=60.29 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+.+.|+++.|++.|+.+.+... .+..+|..+...|.+.|++++|...|+++.+....+..+|..+...|.+.|+++
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 94 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH
Confidence 3445667777777777777665433 456667777777777777777777777776544335667777777777777777
Q ss_pred HHHHHHHHHHHcC
Q 026993 169 STVRIYGLMKRSG 181 (229)
Q Consensus 169 ~A~~~f~~M~~~g 181 (229)
+|.+.|+++.+..
T Consensus 95 ~A~~~~~~~~~~~ 107 (125)
T 1na0_A 95 EAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776643
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.67 E-value=1.2e-06 Score=73.05 Aligned_cols=131 Identities=6% Similarity=-0.043 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.....+.+.|++++|+.+|+.+.+... .+...|..+-..|.+.| ++++|...|++..+....+...|..+...|...|
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 456777888999999999998876544 46778888999999999 9999999999987665335678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
++++|.+.|++..+..- .+..++..+...+...|++++|.+.+++.-+..+.+
T Consensus 140 ~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMK-----GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp CHHHHHHHHHHHHHHTT-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 99999999999987653 345667779999999999999999999888775543
No 31
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.3e-06 Score=62.11 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...|..+...|.+.|++++|.++|+++.+....+..+|..+...|.+.|++++|..+|+++.+..- .+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----ccHHHHHHH
Confidence 567888899999999999999999998765534678999999999999999999999999988653 577889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
...+...|++++|.+.++++.+..+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988776554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.65 E-value=1.1e-06 Score=74.73 Aligned_cols=122 Identities=12% Similarity=0.027 Sum_probs=100.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHH---HHHHHHHHHcCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGL---SRVVRAVVEAGS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ty---n~lI~~~~~~g~ 166 (229)
..+.+.|++++|++.|+. . .+...+..+...|.+.|++++|.+.|+++.+.. ||...+ ...+..+...|+
T Consensus 109 ~~~~~~g~~~~Al~~l~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-----G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQD-EDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-----C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHCCCHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchH
Confidence 567899999999999876 3 788899999999999999999999999998764 553211 223344445689
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+++|..+|+++.+. .+ .|...|+.+-..+.+.|++++|.+.+++.-+..|..
T Consensus 182 ~~eA~~~~~~~l~~-~p----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 182 LQDAYYIFQEMADK-CS----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHHHHHHHHHHH-SC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999987 33 688899999999999999999999999877765543
No 33
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=1e-06 Score=63.14 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
.|..+...|.+.|++++|..+|+++.+.+..+...|..+...+...|++++|.++|+++...+- .+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----CchHHHHHHHH
Confidence 5778889999999999999999998876534678899999999999999999999999988753 57788899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 199 GLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+...|++++|.++++++.+..+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999988776543
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.6e-06 Score=69.66 Aligned_cols=127 Identities=9% Similarity=-0.124 Sum_probs=104.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-------------------------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE-------------------------YQQQ-DLGLLTDLINTLAKNGLTGEVDRLIG 141 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~-------------------------~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~ 141 (229)
+-..+.+.|++++|+..|+...+. .. | +...|..+-..|.+.|++++|...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345566778888888888777652 12 3 35678888899999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 142 ELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 142 ~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+..+....+..+|..+-..|.+.|++++|.+.|++..+..- .+..+|..+-..+.+.|+.++|.+.+++..+..
T Consensus 164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 98776534678999999999999999999999999988653 467889999999999999999999999876654
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.5e-06 Score=68.49 Aligned_cols=130 Identities=10% Similarity=-0.023 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------------
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE---YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-------------- 145 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~---~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-------------- 145 (229)
.+-..+.+.|++++|+..|....+. .. ++ ..+|..+-..|.+.|++++|...|++..+
T Consensus 43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 43 NRAAAEYEKGEYETAISTLNDAVEQGREMR-ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 3445678899999999999998664 22 23 57899999999999999999999999876
Q ss_pred ------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 146 ------------IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 146 ------------~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
...-+...|..+-..|.+.|++++|.+.|++..+..- .+..+|..+...+.+.|++++|.+.+
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2212356888999999999999999999999988653 57888999999999999999999999
Q ss_pred HHhhhcCCC
Q 026993 214 REFCWVPGG 222 (229)
Q Consensus 214 ~e~~~~~~~ 222 (229)
++.-+..+.
T Consensus 197 ~~al~~~~~ 205 (258)
T 3uq3_A 197 NKAIEKDPN 205 (258)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCHH
Confidence 988776543
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.60 E-value=9.2e-06 Score=62.73 Aligned_cols=128 Identities=5% Similarity=-0.143 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+-..+.+.|+++.|+..+........ -+...+..+-..+.+.++.++|...+.+..+...-+...|..+-..|.+.|+
T Consensus 44 ~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 44 KLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC
Confidence 344567788999999988888766544 4566777788888899999999999988766543357788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+++|++.|++..+..- -+..+|..+-..+.+.|+.++|.+.|++.-+..
T Consensus 123 ~~~A~~~~~~~l~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKP-----GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhcc-----hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999999999887653 467788889999999999999999998776553
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.59 E-value=5.7e-07 Score=73.30 Aligned_cols=125 Identities=12% Similarity=0.005 Sum_probs=105.7
Q ss_pred hcCCHHHHHHHHHHHHHHc-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 94 RQGECAVAVHVFSTIQREY-Q-Q-QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~-~-~-pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
..|++++|+..|+.+.+.. . . .+..+|..+-..|.+.|++++|...|++..+....+..+|..+-..|.+.|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4578999999999987641 1 0 14678999999999999999999999998876534688999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+.|++..+..- .+..+|..+...+.+.|++++|.+.++++.+..+..
T Consensus 97 ~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 97 YEAFDSVLELDP-----TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCc-----cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 999999988642 467889999999999999999999999988765543
No 38
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=4.3e-06 Score=62.82 Aligned_cols=125 Identities=10% Similarity=-0.012 Sum_probs=100.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|+++.|+..|....+... .+..+|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 34456789999999999998876544 57888999999999999999999999998765433678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVG--KVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty--~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++|.+.|++..+..- -+...+ -.+...+.+.|++++|.+.+.....
T Consensus 98 ~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 98 RAALRDYETVVKVKP-----HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999987653 244444 4444447888999999999886654
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.59 E-value=2.3e-06 Score=69.86 Aligned_cols=124 Identities=9% Similarity=-0.000 Sum_probs=68.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~ 166 (229)
..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.+ .|+ ..+|..+-..|.+.|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 344555666666666665544322 233355555556666666666666666655433 222 2345566666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|.+.|++..+..- -+..+|..+-..+...|++++|.+.+++.-+.
T Consensus 90 ~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDT-----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 6666666666555432 23345555666666666666666666555444
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.58 E-value=1e-05 Score=62.52 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=104.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|++.|+...+.-. -+...|..+-..|.+.|++++|...+........-+...|..+-..+...++++.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHH
Confidence 456788999999999988866433 3677888999999999999999999998876543356778888888899999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|.+.+.+..+..- -+...+..+-..+.+.|++++|.+.+++.-+..|..
T Consensus 92 a~~~~~~a~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 92 AIDALQRAIALNT-----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCc-----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 9999998877643 467788888999999999999999999887765543
No 41
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=2.9e-06 Score=66.99 Aligned_cols=128 Identities=9% Similarity=-0.109 Sum_probs=104.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|+..|+.. .. |+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a---~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV---QD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS---SS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHH---cC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 4567889999999998766 34 8889999999999999999999999999876543367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCC----------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 170 TVRIYGLMKRSGVGCS----------WKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~----------~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
|.+.|++..+..-... ..| +...|..+-..+.+.|+.++|.+.+++..+..+
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999987532100 001 226778899999999999999999998877755
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.54 E-value=6.6e-06 Score=66.31 Aligned_cols=124 Identities=10% Similarity=-0.038 Sum_probs=73.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN-----------GLTGEVDRLIGELEEIDGGDGRGLSRVVR 159 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~-----------g~~~~A~~lf~~M~~~g~pd~~tyn~lI~ 159 (229)
.+.+.|++++|+..|+...+... -+...|..+-..|.+. |++++|...|++..+...-+...|..+=.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34556666666666666544322 2445566666666666 66666666666655432113456666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.|...|++++|.+.|++..+.. . +...+..+-..+...|++++|.+.+++.-+..|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~-~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE-D-----TPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCChHHHHHHHHHHHhcc-c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6666666666666666665544 3 444555566666666666666666666555433
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.54 E-value=7.3e-06 Score=68.73 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=54.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
..+.+.|++++|.++|+++.+....+...|..+-..|.+.|++++|.+.|++..+..- .+..+|..+...+...|
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-----DNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-----CCHHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Confidence 4555666666666666665544333455666666666666666666666666655432 35556666666666666
Q ss_pred CHHHHHHHHHHhhhcCC
Q 026993 205 EEELANEVEREFCWVPG 221 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~ 221 (229)
++++|.+.+++..+..+
T Consensus 203 ~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQ 219 (359)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhhCc
Confidence 66666666666555433
No 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.53 E-value=1.3e-05 Score=67.21 Aligned_cols=128 Identities=9% Similarity=0.000 Sum_probs=106.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+.+.|++++|++.|+.+.+... .+...|..+-..|.+.|++++|...|++..+....+..+|..+...|.+.|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3567789999999999999877655 578889999999999999999999999998765446789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGK------------VLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~------------~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|.+.|++..+..- .+..++. .+...+.+.|++++|.+.+++..+..+.
T Consensus 206 ~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 206 LSLSEVRECLKLDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhhCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999987643 2333333 2356689999999999999988776544
No 45
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.5e-06 Score=74.00 Aligned_cols=126 Identities=9% Similarity=-0.042 Sum_probs=87.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRVVRAVVE 163 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~lI~~~~~ 163 (229)
..+.+.|++++|+..|+.+.+... .+..+|..+...|.+.|++++|...|+++.+.. .++ ..+|..+...|.+
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 344566777777777777665433 355667777777788888888888877765543 222 3477777777777
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 ---AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ---~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.|++++|.+.|++..+..- -+..++..+...+.+.|+.++|.+.+++..+..+
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhcCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 7888888888877776542 3566777778888888888888888877666544
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=1.6e-05 Score=56.63 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=89.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+...|+++.|+..|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH
Confidence 34556788999999999988876544 56788889999999999999999999988765433577888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
++|.+.|++..+..- -+...+..+...+.+.|+
T Consensus 97 ~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 97 VEAVAYYKKALELDP-----DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHhc
Confidence 999999999887642 366677777777776665
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.44 E-value=1.3e-05 Score=64.48 Aligned_cols=126 Identities=18% Similarity=0.043 Sum_probs=105.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc----
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA---- 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~---- 164 (229)
-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence 3457789999999999988765333 46778999999999999999999999998765422567899999999999
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 165 -------GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 165 -------g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
|++++|.+.|++..+..- -+...|..+-..+...|+.++|.+.+++.-+..
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNP-----RYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhcccccCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999999999999987642 356788889999999999999999999876544
No 48
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=5.1e-06 Score=64.05 Aligned_cols=124 Identities=8% Similarity=-0.083 Sum_probs=71.7
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAGSK--EST 170 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g~~--~~A 170 (229)
..|+++.|+..|....+... .+...|..+-..|...|++++|...|++..+....+...|..+-.. |.+.|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556666666655544333 3455666666666777777777777766554332245555555555 5566666 777
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+.|++..+..- -+...+..+-..+...|+.++|.+.+++..+..+.+
T Consensus 101 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDS-----NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCC-----CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 777766665432 245556666666667777777777776666654443
No 49
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.43 E-value=4.5e-05 Score=60.96 Aligned_cols=128 Identities=10% Similarity=-0.081 Sum_probs=105.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-..+.+.|++++|+..|+...+. -. +|...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++
T Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 14 GNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH
Confidence 34567899999999999988765 32 56777777889999999999999999998766422567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDE-------YVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~-------~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|++..+..- -|. .+|..+-..+...|++++|.+.+++.-+..+.
T Consensus 93 ~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 93 QEYIATLTEGIKAVP-----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999999999987542 233 45777888889999999999999988776543
No 50
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.42 E-value=7.3e-06 Score=73.33 Aligned_cols=123 Identities=7% Similarity=-0.107 Sum_probs=91.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|++++|+..|....+... .+..+|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456778888888877765444 45677888888888888888888888887665422456788888888888888888
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|++..+..- .+..+|..+...+...|++++|.+.++++.+.
T Consensus 364 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 364 EAFFNETKLKFP-----TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888876642 35567777888888888888888888876554
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=2.4e-06 Score=70.61 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=102.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-----C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCC-HH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-----Q-QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GGD-GR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-----~-~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~pd-~~ 152 (229)
+-..+...|++++|+..|+...+.. . .| ....|+.+-..|.+.|++++|.+.|++..+. + .|+ ..
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3455667899999999999886542 1 12 3567888889999999999999999987664 2 333 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------------------CCCC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSG-----------------------------------------------VGCS 185 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g-----------------------------------------------~~~~ 185 (229)
+|+.+-..|.+.|++++|.+.|++..+.. ..
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 274 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-- 274 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC--
Confidence 89999999999999999999999987531 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 186 WKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 186 ~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..+..+|..+...|.+.|++++|.+++++.-+..
T Consensus 275 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 275 -PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 0345678899999999999999999999876653
No 52
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.38 E-value=5.5e-06 Score=73.45 Aligned_cols=124 Identities=6% Similarity=-0.143 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|++++|+..|+...+. . |+...|..+...|.+.|++++|...|++..+....+..+|..+...|.+.|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL-F-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-C-CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455667777777777666442 2 335556666666666666666666666655443224455666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+.|++..+..- .+..++..+...+...|++++|.++++++.+.
T Consensus 322 ~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 322 QAGKDFDKAKELDP-----ENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHHHHHHHHHHTCS-----SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666655432 24445555666666666666666666655544
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.37 E-value=1.1e-05 Score=72.03 Aligned_cols=127 Identities=9% Similarity=-0.116 Sum_probs=109.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+...|++++|+..|+...+ .. |+...|..+-..|.+.|++++|...|++..+...-+..+|..+...|.+.|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESIN-LH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHh-cC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 456778999999999998865 44 7788899999999999999999999999876653367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|.+.|++..+..- -+..+|..+...+...|++++|.+++++.-+..+..
T Consensus 329 A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 329 AKEDFQKAQSLNP-----ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp HHHHHHHHHHHCT-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999988653 356788899999999999999999999888775543
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.37 E-value=5.7e-06 Score=67.04 Aligned_cols=129 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH----cC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCC-HH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE----YQ--QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GGD-GR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~----~~--~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~pd-~~ 152 (229)
+-..+...|++++|+..|....+. .. .| ...+|..+-..|.+.|++++|...|++..+. + .|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 445667889999999999987653 22 02 3567888999999999999999999987664 2 232 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------------------CCCC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSG-----------------------------------------------VGCS 185 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g-----------------------------------------------~~~~ 185 (229)
+|..+-..|.+.|++++|.+.|++..+.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-- 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--
Confidence 89999999999999999999999887530 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 186 WKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 186 ~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..+..+|..|...+.+.|++++|.+++++.-+.
T Consensus 249 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 -PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 023457888999999999999999999987554
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=2.4e-05 Score=54.74 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|+++.|...|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|+++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH
Confidence 3344556666666666665544332 345555556666666666666666666554433223455566666666666666
Q ss_pred HHHHHHHHHHHc
Q 026993 169 STVRIYGLMKRS 180 (229)
Q Consensus 169 ~A~~~f~~M~~~ 180 (229)
+|.+.|.+..+.
T Consensus 90 ~A~~~~~~~~~~ 101 (118)
T 1elw_A 90 EAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 666666655543
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.32 E-value=2.8e-05 Score=65.78 Aligned_cols=129 Identities=7% Similarity=-0.081 Sum_probs=79.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLA-KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~-k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
..+.+.|++++|..+|+...+... .+...|........ ..|+.++|..+|+...+...-+...|..++..+.+.|+.+
T Consensus 142 ~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 142 KFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 334455566666666655543211 22233332222211 2466666666666654432114667788888888888888
Q ss_pred HHHHHHHHHHHcC-CCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 169 STVRIYGLMKRSG-VGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 169 ~A~~~f~~M~~~g-~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+|..+|++..+.. +. | +...|..++....+.|+.+.|.++++++.+..|.+
T Consensus 221 ~A~~~~~~al~~~~l~----p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 221 NTRVLFERVLTSGSLP----PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHSSSSC----GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 8888888887753 33 5 35677777888888888888888888877766553
No 57
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=1.1e-05 Score=56.11 Aligned_cols=102 Identities=15% Similarity=-0.041 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC--CHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGK 194 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P--d~~Ty~ 194 (229)
...|..+-..+.+.|++++|...|++..+....+...|..+-..|.+.|++++|.+.|++..+..- - +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-----DEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----ccchHHHHH
Confidence 344566666777788888888888776654433566777777778888888888888877776531 2 467777
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhhcCCCC
Q 026993 195 VLSKGLRRF-GEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 195 ~Li~~~~~~-g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+...+.+. |+.++|.+.+++.-+..+++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777778888 88888888888777765543
No 58
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.31 E-value=7.5e-06 Score=66.32 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=102.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-----C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCC-HH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-----Q-QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GGD-GR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-----~-~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~pd-~~ 152 (229)
+-..+...|++++|+..|+...+.. . .| ...+|+.+-..|...|++++|...|.+..+. . .|+ ..
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 4455778999999999999876541 1 12 3567889999999999999999999987654 1 233 57
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRS------GVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~------g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|..+-..|...|++++|.+.|++..+. +.. | +..++..+-..+.+.|++++|.+++++..+.
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD----PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999998765 222 3 4578889999999999999999999977664
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.30 E-value=4.3e-05 Score=62.11 Aligned_cols=129 Identities=10% Similarity=-0.082 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
-..+.+.|++++|+..|+...+....++ ...|..+-..|.+.|++++|...|++..+...-+..+|..+-..|.+.|+
T Consensus 44 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence 3356778888888888887765311122 33477778888888888888888888766542345678888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|++..+..- -+..+|..+-..+...+++++|.+.+++.-+..+.
T Consensus 124 ~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHGGGCCSSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8888888887766521 35555655552444456888888888877666544
No 60
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.30 E-value=4.4e-05 Score=70.05 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=109.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|++.|+...+... .+...|..+-..|.+.|++++|.+.|++..+...-+...|..+-..|.+.|++
T Consensus 29 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 29 LADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778999999999988765433 46778999999999999999999999998765433578999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhcCCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF---GEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~---g~~~~A~~v~~e~~~~~~~~ 223 (229)
++|.+.|++..+..- -+...+..+...+... |+.++|.+.+++.-+..+..
T Consensus 108 ~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999987653 3677888899999999 99999999999887776554
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.29 E-value=4.8e-05 Score=72.92 Aligned_cols=125 Identities=12% Similarity=-0.009 Sum_probs=87.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+-..+.+.|++++|++.|++..+. . | +...|+.|=..|.+.|++++|.+.|++..+...-+...|+.+=..|.+.|+
T Consensus 49 Lg~~l~~~g~~~eA~~~~~~Al~l-~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 49 LASVLQQQGKLQEALMHYKEAIRI-S-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888877776542 3 4 456777777788888888888888877655431245677788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|++.|++..+..- =+...|..|...+...|++++|.+.++++.+.
T Consensus 127 ~~eAi~~~~~Al~l~P-----~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 127 IPEAIASYRTALKLKP-----DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 8888888877766531 24566777777888888888887777766554
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.29 E-value=1e-05 Score=66.76 Aligned_cols=127 Identities=11% Similarity=-0.026 Sum_probs=100.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH----c--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CC-CHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE----Y--QQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GG-DGRGL 154 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~----~--~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~p-d~~ty 154 (229)
..+...|++++|+.+|+...+. . ..| ...+|..+-..|...|++++|...|++..+. + .| ...+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4467889999999999988653 1 102 3567888999999999999999999987654 2 23 35789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRS------GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~------g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.+-..|...|++++|.+.|.+..+. +.. .....++..+...+...|++++|.+++++..+.
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 332 024567888999999999999999999877654
No 63
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=3.1e-05 Score=55.13 Aligned_cols=102 Identities=10% Similarity=-0.067 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..+-..+...|++++|...|++..+....+...|..+-..|...|++++|.+.|.+..+..- .+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----AYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----cCHHHHHH
Confidence 4567888888999999999999999998765433678899999999999999999999999987643 46778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+...+.+.|++++|.+.+++..+..+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999988776554
No 64
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=3e-05 Score=55.74 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=80.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|+++.|+..|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH
Confidence 34456778889999988888765333 46778888888888899999999999887765433567888888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
++|.+.|++..+..- -+...+..+-..+.+.|
T Consensus 101 ~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 101 TKAMDVYQKALDLDS-----SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHCG-----GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHhc
Confidence 999999988876532 23345555555554443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.25 E-value=4.2e-05 Score=64.63 Aligned_cols=126 Identities=6% Similarity=-0.084 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH-H
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQD-LG-LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV-E 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~-~ 163 (229)
.....+.+.|++++|..+|+...+ .. |+ .. .|..+...+.+.|++++|..+|++..+...++...|........ .
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-SS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-cc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 445556788999999999998875 33 43 33 89999999999999999999999988765334555654433322 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.|+.++|.++|++..+.. + -+...|..++..+.+.|+.++|+.+|+..-+.
T Consensus 182 ~~~~~~A~~~~~~al~~~-p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-G----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-T----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhC-C----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 699999999999987753 2 36678889999999999999999999988774
No 66
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.25 E-value=2e-05 Score=56.67 Aligned_cols=102 Identities=8% Similarity=-0.140 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
.+...|..+-..+.+.|++++|...|++..+...-+...|..+-..|...|++++|.+.|++..+..- .+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----TFIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----TCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CchHHHH
Confidence 35667888999999999999999999998765533678999999999999999999999999987643 4678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+-..+.+.|++++|.+.+++..+..+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999998776644
No 67
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.21 E-value=0.00026 Score=56.86 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHhhhC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQDL-GLLTDLINTLAK------------------NGLTGEVDRLIGELEEI 146 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~-~ty~~LI~~~~k------------------~g~~~~A~~lf~~M~~~ 146 (229)
.+-..+.+.|++++|+..|+...+.+. .+.. ..|..+-..|.+ .|+.++|...|++..+.
T Consensus 46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 345667889999999999999877532 1221 123223233332 57899999999999876
Q ss_pred CCCCH-HHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHHHHhcC
Q 026993 147 DGGDG-RGLS-----------------RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE----YVGKVLSKGLRRFG 204 (229)
Q Consensus 147 g~pd~-~tyn-----------------~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~Li~~~~~~g 204 (229)
. |+. ..+. .+-..|.+.|++++|...|+++.+.- |+. -.+..+...+.+.|
T Consensus 126 ~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 126 Y-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY------PDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp C-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTSHHHHHHHHHHHHHHHHTT
T ss_pred C-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC------cCCCccHHHHHHHHHHHHHcC
Confidence 4 332 2222 34456889999999999999998753 442 45777999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCCC
Q 026993 205 EEELANEVEREFCWVPGGSLEN 226 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~~~~~ 226 (229)
+.++|.+.++.+....+.+++.
T Consensus 199 ~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCC
T ss_pred CcHHHHHHHHHHHhhCCCchhh
Confidence 9999999999999998888763
No 68
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.20 E-value=3.9e-05 Score=66.44 Aligned_cols=124 Identities=8% Similarity=-0.044 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----CHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ--QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-----DGRGLSRVVR 159 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~--~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p-----d~~tyn~lI~ 159 (229)
.+-..+...|+.++|++++...... . .-+...+..++..|.+.|+.+.|.+++++|.+. .| +..+...|..
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CccccccchHHHHHHHH
Confidence 3456677789999999999876431 1 025677889999999999999999999999764 45 3566677776
Q ss_pred H--HHHcC--CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 160 A--VVEAG--SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 160 ~--~~~~g--~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+ ....| +..+|+.+|+++.+. . |+..+-..|++++.+.|++++|+++++.+.+
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~-~-----p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT-F-----PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT-S-----CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh-C-----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 33334 999999999998654 2 7756666777799999999999999986554
No 69
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=0.00024 Score=49.48 Aligned_cols=103 Identities=12% Similarity=-0.115 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..+...+...|++++|...|++.......+...|..+-..|.+.|++++|.+.|++..+..- .+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 77 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----DWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----ccHHHHHH
Confidence 3456788888999999999999999998765433678899999999999999999999999987653 46788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+...+...|+.++|.+.+++..+..+..
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999988876543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.17 E-value=3e-05 Score=70.15 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=55.8
Q ss_pred HHhcCCH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc------
Q 026993 92 LIRQGEC-AVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA------ 164 (229)
Q Consensus 92 l~~~g~~-~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~------ 164 (229)
+...|++ ++|++.|+...+... -+...|..+-..|.+.|++++|.+.|++..+.. |+...|..+-..|...
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CCHHHHHHHHHHHTTCCCSCHH
T ss_pred HHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHhccCChh
Confidence 3445555 555555555443221 234445555555555555555555555544332 3344444444444444
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhh
Q 026993 165 ---GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF--------GEEELANEVEREFCW 218 (229)
Q Consensus 165 ---g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~--------g~~~~A~~v~~e~~~ 218 (229)
|++++|.+.|++..+..- -+...|..+-..+... |++++|.+.|++.-+
T Consensus 190 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMDV-----LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 555555555554444321 2334444444444444 444444444444333
No 71
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.17 E-value=2.1e-07 Score=84.41 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
...+...+.+.|++++|+..++..++. . ++..+++.|+.+|.|.|+++++.++|+ .|+..+|+.+-..|...
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~-~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKK-A-RESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT------CC---------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh-C-ccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHc
Confidence 345777788889999999877666553 3 567889999999999999999887774 26777999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|++++|...|..+ . .|..|.+.+.+.|++++|.+.++.+.
T Consensus 136 g~yeeA~~~Y~~a-----~--------n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 136 KMYDAAKLLYNNV-----S--------NFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -CTTTHHHHHHHT-----T--------CHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh-----h--------hHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 9999999999866 1 68889999999999999999988773
No 72
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=4.9e-05 Score=54.18 Aligned_cols=103 Identities=10% Similarity=0.111 Sum_probs=80.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCC----HHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGD----GRGLSRVVRA 160 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd----~~tyn~lI~~ 160 (229)
+-..+.+.|+++.|+..|....+... .+...|..+-..|.+.|++++|...|++..+.. .++ ..+|..+-..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 34456788999999999988876544 567788889999999999999999999876654 122 6788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 161 VVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
|.+.|++++|.+.|++..+.. ||......+-
T Consensus 89 ~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~l~ 119 (131)
T 1elr_A 89 YFKEEKYKDAIHFYNKSLAEH------RTPDVLKKCQ 119 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC------CCHHHHHHHH
Confidence 999999999999999988753 6654444443
No 73
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=4.9e-05 Score=54.17 Aligned_cols=102 Identities=10% Similarity=-0.075 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVG 193 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty 193 (229)
..|..+-..+.+.|++++|...|++..+....+...|..+-..|.+.|++++|...|.+..+..-.. .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 4577888899999999999999999876553467889999999999999999999999987653210 023 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
..+-..+.+.|++++|.+.+++..+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8899999999999999999998877654
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.11 E-value=5.2e-05 Score=58.35 Aligned_cols=93 Identities=8% Similarity=-0.001 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|+..|+...+.-. -|...|..+=.+|.+.|++++|...|++..+...-+...|..+=.+|.+.|++
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 33456678888888888887765332 35667777878888888888888888877655422456777788888888888
Q ss_pred HHHHHHHHHHHHcC
Q 026993 168 ESTVRIYGLMKRSG 181 (229)
Q Consensus 168 ~~A~~~f~~M~~~g 181 (229)
++|.+.|++..+..
T Consensus 121 ~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 121 LKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877653
No 75
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.10 E-value=0.00013 Score=53.88 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|++++|++.|+...+... .+...|..+-.+|.+.|++++|...|++..+....+...|..+-..|.+.|++++|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHH
Confidence 45677788888888777655333 35667777777788888888888888776654433566777777778888888888
Q ss_pred HHHHHHHHHc
Q 026993 171 VRIYGLMKRS 180 (229)
Q Consensus 171 ~~~f~~M~~~ 180 (229)
.+.|++..+.
T Consensus 101 ~~~~~~al~l 110 (126)
T 4gco_A 101 QRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=0.00012 Score=63.12 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=100.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD---------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRG 153 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd---------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~t 153 (229)
-..+.+.|++++|+..|+...+... .+ ...|+.+-.+|.+.|++++|...|++..+...-+...
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 232 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKG 232 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTT-TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhh-ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 4456788999999999998866432 22 5889999999999999999999999987655336789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA-NEVERE 215 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A-~~v~~e 215 (229)
|..+-.+|.+.|++++|.+.|++..+..- -+...+..+-..+.+.|+.++| .++++.
T Consensus 233 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 233 LSRRGEAHLAVNDFELARADFQKVLQLYP-----NNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987642 3677888899999999999998 344443
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.10 E-value=0.00012 Score=53.92 Aligned_cols=100 Identities=12% Similarity=-0.138 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
.|...=..|.+.|++++|.+.|++..+...-+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~ 89 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-----KFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----hhhHHHHHHHH
Confidence 4555667899999999999999997765534678999999999999999999999999988653 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 199 GLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+...|++++|.+.|++.-+..|..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999888876654
No 78
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=0.00017 Score=52.68 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
..-..+.+.|+++.|++.|+...+ .. |+ ...|..+-..|.+.|++++|...|++..+....+...|..+-..|.
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALG-LD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHT-SC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-Hc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence 344556677888888877777654 33 54 5667777777777888888888887765543224667777777777
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 026993 163 EAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~ 180 (229)
+.|++++|.+.|++..+.
T Consensus 111 ~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 888888888888777664
No 79
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.09 E-value=6.3e-05 Score=69.02 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.|++++|++.|++..+... -+...|..+-..|.+.|++++|.+.|++..+...-+...|..+-..|.+.|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678889988888755333 457789999999999999999999999987665335789999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++..+..- -+...|..+-..+.+.|+.++|.+.+++.-+..+.
T Consensus 81 ~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 81 QQASDAAP-----EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99987652 46788999999999999999999999988776554
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.08 E-value=0.00024 Score=56.60 Aligned_cols=124 Identities=7% Similarity=-0.039 Sum_probs=56.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC--HHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS--KES 169 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~--~~~ 169 (229)
+.+.|++++|+..|+...+... -|...|..+-..|.+.|++++|...|++..+...-+..+|..+-..|...|. .+.
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555555555443222 2344455555555555555555555555443321133445444444443332 222
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+...|..... .. |+...+--+-.++...|+.++|.+.|++.-+..|.
T Consensus 143 ~~~~~~~~~~--~~----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLSS--PT----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC---C--CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhC--CC----chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3333333211 11 22222222233344567788888888877766553
No 81
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=0.00022 Score=54.17 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=79.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence 34457789999999999998876544 47788999999999999999999999998766533578999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 026993 168 ESTVRIYGLMKRSG 181 (229)
Q Consensus 168 ~~A~~~f~~M~~~g 181 (229)
++|.+.|++..+..
T Consensus 96 ~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 96 KGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.08 E-value=0.00013 Score=69.88 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=107.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.++|++++|++.|++..+... -+...|+.|=..|.+.|++++|...|++..+...-+...|+.+=..|.+.|++++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 457789999999999998866332 3577899999999999999999999998776542247899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|.+.|++-.+..- -+...|+.|-..+.+.|++++|.+.|++.-+..+.
T Consensus 96 A~~~~~kAl~l~P-----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 96 ALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999887642 35778999999999999999999999987776554
No 83
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=9.9e-05 Score=56.17 Aligned_cols=103 Identities=14% Similarity=-0.054 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-----KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHH
Confidence 4556778888999999999999999998765433678999999999999999999999999988653 46788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+-..+.+.|++++|.+.|++.-+..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999887765443
No 84
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.08 E-value=7.5e-05 Score=56.67 Aligned_cols=92 Identities=12% Similarity=-0.048 Sum_probs=70.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... .|...|..+=.+|.+.|++++|...|++..+...-+...|..+-..|...|++
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 34556788899999988888765433 46777888888888889999999998887655422456778888888889999
Q ss_pred HHHHHHHHHHHHc
Q 026993 168 ESTVRIYGLMKRS 180 (229)
Q Consensus 168 ~~A~~~f~~M~~~ 180 (229)
++|.+.|++..+.
T Consensus 106 ~~A~~~~~~al~~ 118 (148)
T 2vgx_A 106 AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 85
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.07 E-value=0.00021 Score=51.96 Aligned_cols=91 Identities=10% Similarity=-0.065 Sum_probs=54.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|....+... .+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH
Confidence 33445566666666666666544333 34556666666666666666666666665544322455666666666666666
Q ss_pred HHHHHHHHHHHH
Q 026993 168 ESTVRIYGLMKR 179 (229)
Q Consensus 168 ~~A~~~f~~M~~ 179 (229)
++|.+.|.+..+
T Consensus 94 ~~A~~~~~~a~~ 105 (137)
T 3q49_B 94 DEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.07 E-value=9.9e-05 Score=65.35 Aligned_cols=122 Identities=7% Similarity=-0.138 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL-TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+.+.|++++|+..|+...+.-. -+...|+.+-..|.+.|+ +++|...|++..+...-+...|+.+=..|.+.|++++|
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Confidence 3445555555555555543221 234445555555555554 55555555555443311344555555555555555555
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+..|++..+..- -|...|.-+-..+.+.|++++|.+.++++-+.
T Consensus 186 l~~~~kal~ldP-----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 186 LEFIADILNQDA-----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 555555554432 24445555555555555555555555544443
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.05 E-value=8.3e-06 Score=73.93 Aligned_cols=111 Identities=14% Similarity=-0.027 Sum_probs=79.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
.+..+-..|...|.+++|...|..+. .|..|.++|++.|++++|.+.+.++. +..+|..++.+|+.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~---------n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh---------hHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHH
Confidence 34567778888889999998887662 38899999999999999999999883 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
.|+++.|..+...+. .. ||... .++..|.+.|++++|.++++..-
T Consensus 190 ~~ef~lA~~~~l~L~---~~----ad~l~--~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV---VH----ADELE--ELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTCHHHHHHTTTTTT---TC----HHHHH--HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHH---hC----HhhHH--HHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999966554422 22 77633 58899999999999988887543
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.05 E-value=0.00021 Score=58.33 Aligned_cols=128 Identities=11% Similarity=-0.038 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-HHHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD---LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-GRGLSRVVRAV 161 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd---~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-~~tyn~lI~~~ 161 (229)
.-..+.+.|++++|+..|+.+.+... -+ ...+..+-..|.+.|++++|...|+...+.. .|+ ...|..+-..|
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 34457789999999999999876532 23 5677888889999999999999999987653 333 35677777778
Q ss_pred HH--------cCCHHHHHHHHHHHHHcCCCCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 026993 162 VE--------AGSKESTVRIYGLMKRSGVGCSWKVD-EYVG-----------------KVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 162 ~~--------~g~~~~A~~~f~~M~~~g~~~~~~Pd-~~Ty-----------------~~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+ .|++++|.+.|++..+.. |+ .... -.+-..+.+.|++++|.+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY------PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88 999999999999998754 32 2233 3457778999999999999998
Q ss_pred hhhcCCC
Q 026993 216 FCWVPGG 222 (229)
Q Consensus 216 ~~~~~~~ 222 (229)
+-+..|.
T Consensus 174 ~l~~~p~ 180 (261)
T 3qky_A 174 VFDAYPD 180 (261)
T ss_dssp HHHHCTT
T ss_pred HHHHCCC
Confidence 8776554
No 89
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.05 E-value=0.00011 Score=50.91 Aligned_cols=91 Identities=8% Similarity=-0.089 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHc-CC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG--DGRGLSRVVRAVVEA-GS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p--d~~tyn~lI~~~~~~-g~ 166 (229)
..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.... +...|..+-..|.+. |+
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC
Confidence 446788999999999999876544 56778999999999999999999999998876533 578999999999999 99
Q ss_pred HHHHHHHHHHHHHcC
Q 026993 167 KESTVRIYGLMKRSG 181 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g 181 (229)
+++|.+.|.+.....
T Consensus 93 ~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 93 EVEAEIAEARAKLEH 107 (112)
T ss_dssp SHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999988754
No 90
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.04 E-value=0.0003 Score=53.98 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...+..+=..|.+.|++++|...|+...+...-|...|..+=..|.+.|++++|.+.|++..+..- -+...|.-+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-----~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-----NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----SCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-----CCcHHHHHH
Confidence 445677777899999999999999998866433678999999999999999999999999987653 245677889
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-..|.+.|+.++|.+.|+..-+..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987776543
No 91
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.03 E-value=8.3e-05 Score=55.45 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... .|...|..+=..|.+.|++++|...|+...+...-+...|..+-..|...|++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 34556788999999999988765433 46777888888889999999999999887765422456777888888999999
Q ss_pred HHHHHHHHHHHHc
Q 026993 168 ESTVRIYGLMKRS 180 (229)
Q Consensus 168 ~~A~~~f~~M~~~ 180 (229)
++|.+.|++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887664
No 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.03 E-value=6.4e-05 Score=67.95 Aligned_cols=119 Identities=10% Similarity=-0.045 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLT-GEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~-~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
.++.+++.++....... .+...|..+=..|...|++ ++|.+.|++..+...-+...|+.+-..|.+.|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777776543333 4678888888999999999 999999999876542357899999999999999999999999
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCC
Q 026993 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRF---------GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~---------g~~~~A~~v~~e~~~~~~~ 222 (229)
+..+. . |+...|..+-..+... |++++|.+.+++.-+..+.
T Consensus 162 ~al~~--~----p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 162 GALTH--C----KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp HHHTT--C----CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhh--C----CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 99865 3 8889999999999999 9999999999988776554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.02 E-value=0.00042 Score=56.51 Aligned_cols=132 Identities=10% Similarity=-0.069 Sum_probs=98.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhCCCCC-HHHH--
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAK--------NGLTGEVDRLIGELEEIDGGD-GRGL-- 154 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k--------~g~~~~A~~lf~~M~~~g~pd-~~ty-- 154 (229)
+-..+.+.|++++|+..|+...+.+. .|+ ...|..+-..|.+ .|++++|...|++..+.. |+ ...+
T Consensus 58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 136 (261)
T 3qky_A 58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDA 136 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHH
Confidence 44567889999999999999877532 133 3456677778888 999999999999987654 32 2233
Q ss_pred ---------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhc----------CCHHH
Q 026993 155 ---------------SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRF----------GEEEL 208 (229)
Q Consensus 155 ---------------n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~----------g~~~~ 208 (229)
-.+-..|.+.|++++|...|++..+..-. .| ....+..+...+.+. |++++
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD---TPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 45577789999999999999999875321 01 234566677777766 89999
Q ss_pred HHHHHHHhhhcCCCC
Q 026993 209 ANEVEREFCWVPGGS 223 (229)
Q Consensus 209 A~~v~~e~~~~~~~~ 223 (229)
|.+.++++-+..|.+
T Consensus 214 A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 214 AVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCC
Confidence 999999888876654
No 94
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.01 E-value=0.00025 Score=52.86 Aligned_cols=100 Identities=8% Similarity=-0.174 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
..|..+-..+.+.|++++|...|++..+....+..+|..+-..|.+.|++++|.+.|.+..+..- .+..+|..+-
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHHHH
Confidence 45777778899999999999999998765533678999999999999999999999999887642 4678888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 198 KGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 198 ~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..+...|++++|.+.+++.-+..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999988776554
No 95
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.01 E-value=0.00018 Score=57.31 Aligned_cols=128 Identities=10% Similarity=-0.096 Sum_probs=100.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-------HHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-------RGLSRVVRAV 161 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-------~tyn~lI~~~ 161 (229)
-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+. ..|..+=..+
T Consensus 49 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 49 GVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence 3456788999999999988865332 3566889999999999999999999999876541133 4577777888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCC---HHHHHHHHHHHHhcCCH---------------------------HHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVD---EYVGKVLSKGLRRFGEE---------------------------ELANE 211 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd---~~Ty~~Li~~~~~~g~~---------------------------~~A~~ 211 (229)
.+.|++++|.+.|++..+.. |+ ...|..+-..+...|+. ++|.+
T Consensus 128 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVT------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVD 201 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998653 66 46777777888887877 88888
Q ss_pred HHHHhhhcCCCC
Q 026993 212 VEREFCWVPGGS 223 (229)
Q Consensus 212 v~~e~~~~~~~~ 223 (229)
.+++..+..|..
T Consensus 202 ~~~~a~~l~p~~ 213 (228)
T 4i17_A 202 YLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHhhcCCCC
Confidence 888877765544
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.01 E-value=0.00018 Score=60.40 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH-HHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV-VRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l-I~~~~~~g 165 (229)
..-..+.+.|++++|...|+...+... -+...+..+-..|.+.|++++|..+|++.... .|+...+... -..+.+.|
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHHHhhc
Confidence 344556789999999999998876433 36678889999999999999999999987543 3443322222 22255666
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.++|.+.|.+..+..- .|...+..+-..+...|+.++|.+.+++.-+..|
T Consensus 200 ~~~~a~~~l~~al~~~P-----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENP-----EDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp TSCHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccCccHHHHHHHHhcCC-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 66677777776665542 3455666677777777777777777776655543
No 97
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.0002 Score=51.75 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|++++|+..|....+... .+...|..+-.+|.+.|++++|...|++..+...-+...|..+-..|...|+++
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHH
Confidence 3456677888888888877655433 456777777778888888888888887766544224667777777788888888
Q ss_pred HHHHHHHHHHHc
Q 026993 169 STVRIYGLMKRS 180 (229)
Q Consensus 169 ~A~~~f~~M~~~ 180 (229)
+|.+.|++..+.
T Consensus 90 ~A~~~~~~al~~ 101 (126)
T 3upv_A 90 SALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888776653
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.98 E-value=0.00026 Score=59.18 Aligned_cols=128 Identities=9% Similarity=-0.087 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
.+..+.+.|++++|..+++...+... .|+. ..|..+...+...|++++|...|++..+.. .+| ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678899999999999999876421 1442 244557777788889999999999987643 334 237999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----c-CCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKR----S-GVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~----~-g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|-..|...|++++|.+.|++..+ . +.. +.. .+|.-+-..|.+.|+.++|.+.+++.-+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 2 222 333 37888999999999999999999866543
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.98 E-value=0.00033 Score=53.00 Aligned_cols=110 Identities=10% Similarity=-0.038 Sum_probs=81.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|++.|+...+.-. -+...|..+=..|.+.|++++|...|++..+...-+...|..+-..|.+.|+.
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 34457788999999999988766433 36778888999999999999999999987765422467888888899999998
Q ss_pred HHHHHHH-HHHHHcCCCCCCCC-CHHHHHHHHHHHHhcC
Q 026993 168 ESTVRIY-GLMKRSGVGCSWKV-DEYVGKVLSKGLRRFG 204 (229)
Q Consensus 168 ~~A~~~f-~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g 204 (229)
++|.+.| ++..+.. | +..+|...-.-+...|
T Consensus 116 ~~aa~~~~~~al~l~------P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 116 DGRAKYWVERAAKLF------PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SSHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHhC
Confidence 8877665 6666543 4 4566666555555555
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.96 E-value=2.9e-05 Score=59.01 Aligned_cols=122 Identities=5% Similarity=-0.101 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
..|+++.|+..+...... . | +...+-.|=..|.+.|++++|.+.|++..+...-+..+|..+=..|.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~-~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS-P-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS-H-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhccc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 346778888777655321 1 2 233455677889999999999999999876542367899999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhhcCCC
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV-EREFCWVPGG 222 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v-~~e~~~~~~~ 222 (229)
.|++..+..- -+..+|..+-..+.+.|+.++|.+. ++..-+..|.
T Consensus 87 ~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 87 CYRRSVELNP-----TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHCT-----TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 9999987642 2567888899999999999877665 4666655443
No 101
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=0.00024 Score=65.12 Aligned_cols=130 Identities=9% Similarity=-0.033 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----cC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--CCCH-
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE----YQ--QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEE-----ID--GGDG- 151 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~----~~--~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-----~g--~pd~- 151 (229)
..+..+..+|++++|+.+++...+. +. .|+ ..+++.|-..|...|++++|..++.+..+ -| .|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455677899999999999887543 44 133 35799999999999999999999987543 34 5554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEY-VGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+||.|=..|...|++++|..+|++-.+ .|-. .|+.. +.+.|-..+...|+.++|+.+++.+++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999987543 3533 36554 4466667777888999999999988773
No 102
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00043 Score=49.92 Aligned_cols=98 Identities=10% Similarity=-0.185 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
..|..+=..+.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...|..+-
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CcHHHHHHHH
Confidence 35666677889999999999999998765433678999999999999999999999999988653 4678899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcC
Q 026993 198 KGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 198 ~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..+...|++++|.+.+++.-+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999877654
No 103
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.93 E-value=0.00039 Score=51.71 Aligned_cols=100 Identities=13% Similarity=0.016 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...+..+-..+.+.|++++|...|++......-+...|..+=..|.+.|++++|...|++..+..- -|...|..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-----NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCcHHHHHH
Confidence 345556667889999999999999998765433678899999999999999999999999988653 355677889
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-..+...|++++|.+.++...+..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999998776543
No 104
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.92 E-value=0.00052 Score=49.75 Aligned_cols=102 Identities=8% Similarity=-0.156 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
.+...|..+-..+.+.|++++|...|.+..+...-+...|..+-..|.+.|++++|...|++..+..- -+...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----QSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----hhHHHHH
Confidence 46778889999999999999999999997765533578999999999999999999999999988653 4678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+-..+...|++++|.+.+++.-+..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999999998776533
No 105
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.92 E-value=0.00028 Score=57.95 Aligned_cols=130 Identities=9% Similarity=-0.099 Sum_probs=99.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
+-..+...|++++|+..|+...+... .++ ..+|..+-..|.+.|++++|...|++..+.. ..+ ..+|..
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34456678999999999988765411 022 3478888899999999999999998865432 222 568889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+-..|.+.|++++|.+.|++..+. +-. .....++..+-..+.+.|++++|.+.+++..+..
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDR---IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999987653 211 0124578889999999999999999999887764
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.91 E-value=0.00024 Score=54.78 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=43.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 136 VDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 136 A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
|...|++..+...-|...|..+-..+.+.|++++|.+.|.+..+..-. ..+...+..|...+...|+.++|...+++
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG---AQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---TTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc---cChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 455555544332113556666666666666666666666666554311 01244566666666666666666666653
No 107
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.0004 Score=49.82 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----HHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDL---GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----GRGLSRVVR 159 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~---~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----~~tyn~lI~ 159 (229)
..-..+.+.|++++|+..|+...+... .+. ..+..+-..|.+.|++++|...|++..+.. |+ ...+..+-.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 344567788999999999988866532 222 366677778889999999999998877654 32 466778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 026993 160 AVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.|.+.|+.++|.+.|++..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8889999999999998887753
No 108
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.90 E-value=0.00041 Score=54.35 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=91.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQD--------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGL 154 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd--------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ty 154 (229)
..+.+.|++++|+..|....+... .|+ ...|..+-.+|.+.|++++|...|++..+....+...|
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 125 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKAL 125 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHH
Confidence 346789999999999998876422 121 26888888999999999999999999876543467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELAN 210 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~ 210 (229)
..+-..|.+.|++++|.+.|++..+..- -+...+..+-..+...|+.+++.
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASLNP-----NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887642 35667777777777777776665
No 109
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=0.001 Score=47.65 Aligned_cols=98 Identities=11% Similarity=-0.042 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC-HHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGD-G---RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD-EYVGKVL 196 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~---~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd-~~Ty~~L 196 (229)
.+-..+.+.|++++|...|++..+.. |+ . ..|..+-..|.+.|++++|.+.|++..+..-. .+. ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHHHHHH
Confidence 34457788999999999999987654 33 2 47778888999999999999999999876421 011 5667778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-..+.+.|+.++|.+.++++-+..|.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 889999999999999999887765543
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.89 E-value=0.00071 Score=56.68 Aligned_cols=132 Identities=11% Similarity=-0.033 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCC--CCC----HHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKN-GLTGEVDRLIGELEEID--GGD----GRGL 154 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~-g~~~~A~~lf~~M~~~g--~pd----~~ty 154 (229)
.+-..+.+.|++++|+..|+...+... ..| ..+|+.+-..|.+. |++++|...|++-.+.. ..+ ..+|
T Consensus 82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 344567788999999999988765411 022 35788888899996 99999999998765432 112 3578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE-----YVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-----~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.+-..|.+.|++++|++.|++..+.... .++. .+|..+...+...|+.++|.+.+++..+..+
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMG---NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSS---CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhc---CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999875432 0221 1567777888999999999999998877544
No 111
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=0.00085 Score=48.98 Aligned_cols=128 Identities=9% Similarity=-0.108 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRV 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~l 157 (229)
-..+...|++++|+..|....+... ..+ ..+|..+-..|...|++++|...|++..+.. ..+ ...|..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3446678999999999988765411 022 2478888899999999999999999865432 222 4578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-..|...|++++|.+.|.+..+. +.. .....++..+-..+...|+.++|.+.+++..+.
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDR---IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccch---HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999887643 221 012457788889999999999999999977654
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.86 E-value=0.00055 Score=51.76 Aligned_cols=101 Identities=14% Similarity=0.021 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...+..+-..|.+.|++++|...|.+.......+...|..+=..|.+.|++++|.+.|++..+..- -|...|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-----XEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCchHHHH
Confidence 3456777778899999999999999998765433678899999999999999999999999987652 35577888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+-..+...|+.++|.+.|+..-+..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999998777644
No 113
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.001 Score=48.35 Aligned_cols=103 Identities=12% Similarity=-0.065 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
.+...|..+-..+.+.|++++|...|++..+.. |+ ...|..+-..|.+.|++++|.+.|++..+..- .+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~ 99 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----GDV 99 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----CCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----cCH
Confidence 456778888889999999999999999987654 55 67899999999999999999999999887642 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 191 YVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 191 ~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
..|..+-..+...|+.++|.+.+++..+..+..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 788889999999999999999999887765543
No 114
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.84 E-value=0.00067 Score=61.48 Aligned_cols=126 Identities=6% Similarity=-0.079 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH--HHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQD-L-GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS--RVVRAVV 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~-~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn--~lI~~~~ 162 (229)
.....+.+.|+++.|..+|+...+ .. |+ . ..|......+.+.|++++|..+|+.-.+....+...|- .++. +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~-~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME-YY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-SS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC-cc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH-HH
Confidence 344556678899999999988866 33 43 2 47888888888888899999998887654311222222 2221 33
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..|+.++|..+|++..+.. + -+...|..+++.+.+.|+.++|+.+|+..-...
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-G----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-T----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HcCChhHHHHHHHHHHHHC-C----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 5788888888888776642 1 256777888888888888888888888776653
No 115
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.83 E-value=0.00065 Score=57.89 Aligned_cols=129 Identities=10% Similarity=-0.085 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
+-..+...|++++|+..|+...+... .++ ..+|..+-..|.+.|++++|...|++..+.. ..+ ..+|..
T Consensus 193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 272 (406)
T 3sf4_A 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence 34456678999999999998765411 133 3478888899999999999999998865432 222 568899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-..|.+.|++++|.+.|.+..+..-. .+| ..++..+-..+.+.|++++|.+.+++.-+.
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999987653211 022 567888999999999999999999875543
No 116
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.83 E-value=0.00014 Score=65.95 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=91.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
+.+.|++++|++.|++..+... -+...|+.+-..|.+.|++++|.+.|++..+...-+..+|..+-..|.+.|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4567999999999998876443 468889999999999999999999999988765336789999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
+.|++..+..-. .++....-..+..+.+.|++++|.+++++
T Consensus 95 ~~~~~al~~~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 95 RDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHSTT---CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999998876422 14444444444448888999999999884
No 117
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.82 E-value=0.00024 Score=61.30 Aligned_cols=129 Identities=10% Similarity=-0.036 Sum_probs=99.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC----CHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GG----DGRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p----d~~tyn~ 156 (229)
+-..+.+.|++++|+..|++..+... ..+ ..+|..+-..|.+.|++++|...|++..+.. .. ...+|..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556788999999999988765411 022 3378889999999999999999998765432 11 2578899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-..|.+.|++++|.+.|++..+. +.. .-...+|..+-..+.+.|+.++|.+.+++..+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDR---IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999987653 211 012457888999999999999999999876654
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.81 E-value=0.0012 Score=51.55 Aligned_cols=94 Identities=6% Similarity=-0.188 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-C--------------C
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-G-G--------------D 150 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~-p--------------d 150 (229)
.+-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.. . + +
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 120 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccc
Confidence 344567789999999999998876544 567889999999999999999999999987754 1 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
...|..+-..|.+.|++++|.+.|++..+..
T Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 2788999999999999999999999998754
No 119
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.81 E-value=0.00034 Score=54.08 Aligned_cols=125 Identities=11% Similarity=-0.091 Sum_probs=94.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH---cCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-C----HHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE---YQQ--QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GG-D----GRGLSRV 157 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~---~~~--pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p-d----~~tyn~l 157 (229)
..+...|++++|+..|+...+. ... ....+|+.+-..|...|++++|...|++..+.. .+ + ...++.+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 4466789999999999987663 110 134578888889999999999999998765431 22 2 3568888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-..+...|++++|.+.|.+..+. +. +. ..++..+-..+...|+.++|.+.+++..+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADD-----QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999887632 22 22 344677888899999999999999866543
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.80 E-value=0.00019 Score=55.50 Aligned_cols=121 Identities=13% Similarity=-0.011 Sum_probs=89.9
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C--CCCHHHHHHHHHHHHHcCC
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI----D--GGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g--~pd~~tyn~lI~~~~~~g~ 166 (229)
...|++++|.++++.+..... ....+|+.+-..|...|++++|...|++..+. | .....+|+.+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996655543222 35678889999999999999999999886652 2 1234688889999999999
Q ss_pred HHHHHHHHHHHHHc----CCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 167 KESTVRIYGLMKRS----GVGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 167 ~~~A~~~f~~M~~~----g~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+++|.+.|.+-.+. |-. | ....+..+-..+...|++++|.+.+++..+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPED----PLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999886543 211 2 135678888899999999999999987654
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.77 E-value=0.0007 Score=51.70 Aligned_cols=93 Identities=6% Similarity=0.081 Sum_probs=77.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINT-LAKNGLT--GEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~-~~k~g~~--~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
+-..+...|+++.|+..|+...+... .+...|..+-.. |.+.|++ ++|...|++..+...-+...|..+-..|.+.
T Consensus 50 lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 34456789999999999999876544 467778888888 7799998 9999999998766533577888999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 026993 165 GSKESTVRIYGLMKRSG 181 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g 181 (229)
|++++|.+.|.+..+..
T Consensus 129 g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 99999999999998764
No 122
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.77 E-value=0.00047 Score=60.93 Aligned_cols=126 Identities=9% Similarity=-0.032 Sum_probs=102.1
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGE-CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~-~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-..+.+.|+ +++|+..|+...+.-. -+...|+.+=..|.+.|++++|...|++..+...-|...|+.+-..+.+.|++
T Consensus 138 g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 138 RVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 344667886 9999999999876433 46778999999999999999999999998876533688999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHhhhcC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR-FGEEELA-----NEVEREFCWVP 220 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~-~g~~~~A-----~~v~~e~~~~~ 220 (229)
++|++.|+++++..- -+...|+-+-..+.+ .|..++| .+.+++.-+..
T Consensus 217 ~eAl~~~~~al~l~P-----~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV-----RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp TTHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 999999999998764 477888888888988 6665777 36666554443
No 123
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.76 E-value=0.00055 Score=49.89 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
...-..+.+.|++++|+..|+...+... -+...|..+=..|.+.|+.++|...|++..+...-+...|..+-..|.+.|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444556778888888888887765433 356677777778888888888888888776544224567778888888888
Q ss_pred CHHHHHHHHHHHHHc
Q 026993 166 SKESTVRIYGLMKRS 180 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~ 180 (229)
++++|.+.|++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877653
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.75 E-value=0.0004 Score=65.68 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=104.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... -|...|..+=..|.+.|++++|...|++..+...-+...|+.+=..|.+.|++
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence 34456788999999999998876543 46678888888999999999999999997765422567889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++ .+.|++..+..- -+...|..+-..+.+.|+.++|.+.+++.-+..+
T Consensus 518 ~~-~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 518 DE-HKFYQTVWSTND-----GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp CT-TCHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred HH-HHHHHHHHHhCC-----chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 99 999999887653 3667888899999999999999999987766544
No 125
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0042 Score=50.60 Aligned_cols=119 Identities=8% Similarity=-0.103 Sum_probs=91.3
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 026993 89 LRELIR----QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGDGRGLSRVVRA 160 (229)
Q Consensus 89 l~~l~~----~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~ 160 (229)
-..+.+ .+++++|+..|+...+. -+...+..|-..|.+ .|++++|...|++..+.+ +...|..|=..
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 119 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDL---NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 344556 88899999888877552 356677778888888 899999999998877664 67788888888
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 161 VVE----AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 161 ~~~----~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
|.+ .|+.++|.+.|++-.+.+. + ..+..+-..+.. .++.++|.+.+++.-+.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~~-----~--~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLND-----G--DGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTTC-----H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcCc-----H--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 888 8899999999988887653 3 455556667777 88999999888876554
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.73 E-value=0.0025 Score=53.02 Aligned_cols=132 Identities=9% Similarity=-0.097 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCC--HHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID----GGD--GRGL 154 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g----~pd--~~ty 154 (229)
...+..+...|++++|++.+....+... .++ ...+..+-..|...|++++|...|.+..+.. .+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456778899999999999987765422 011 1234445566788899999999999876432 222 4589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRS--GVGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.+-..|...|++++|.+.|++..+. .... .+ +..+|.-+-..|.+.|++++|.+.+++.-+.
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999988631 1100 02 2258888999999999999999999876543
No 127
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.73 E-value=0.00063 Score=49.59 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKG 199 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~ 199 (229)
+..+-..+.+.|++++|...|++..+...-+...|..+=..+.+.|+.++|...|++..+..- -+...+..+-..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----KDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH
Confidence 344556788999999999999998765423678888899999999999999999999987652 366788889999
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC
Q 026993 200 LRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+...|+.++|.+.+++.-+..|
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998877644
No 128
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.71 E-value=0.00058 Score=61.89 Aligned_cols=129 Identities=8% Similarity=-0.051 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLT--DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~--~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
....+.+.|+.+.|.++|+...+... .+...|- +++ .+.+.|+.++|..+|+...+...-+...|..++..+.+.|
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~-~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHH-HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 34445678899999999988765322 2222232 333 2346899999999999876543225789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.++|..+|++....+-. .|+ ...|...+.-....|+.+.+.++++.+.+..|
T Consensus 440 ~~~~Ar~~~~~al~~~~~---~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSL---PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHSCCS---CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CHhhHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999886421 143 55788889988999999999999998887655
No 129
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00059 Score=56.00 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=97.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CC-CHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GG-DGRGLSRVV 158 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~p-d~~tyn~lI 158 (229)
-..+.+.|++++|+..|+...+... .| ...|..+-..|...|++++|...|++..+. + .| ...+|..+-
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3456789999999999999876532 23 467889999999999999999999876432 2 11 256889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 026993 159 RAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGE--------------------EELANEVER 214 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~--------------------~~~A~~v~~ 214 (229)
..|...|++++|.+.|.+..+..-. .++ ..+|..+-..+...|+ +++|.+.++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRE---LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999987543111 023 4488889999999999 999988887
Q ss_pred Hhhh
Q 026993 215 EFCW 218 (229)
Q Consensus 215 e~~~ 218 (229)
+..+
T Consensus 168 ~a~~ 171 (338)
T 3ro2_A 168 ENLS 171 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 130
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.67 E-value=0.00041 Score=59.81 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=98.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CC-CHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GG-DGRGLSRV 157 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~p-d~~tyn~l 157 (229)
.-..+.+.|++++|+..|+...+... .|. .+|..+-..|...|++++|...|++..+. + .| ...+|+.+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34457789999999999999876532 233 47888889999999999999999886543 2 12 34789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHh
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGE-----------------EELANEVEREF 216 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~-----------------~~~A~~v~~e~ 216 (229)
-..|...|++++|.+.|.+..+. +-. .-...+|..+-..+...|+ +++|.+.+++.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDR---LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999987653 221 0235678889999999999 99998888765
Q ss_pred hh
Q 026993 217 CW 218 (229)
Q Consensus 217 ~~ 218 (229)
.+
T Consensus 210 l~ 211 (411)
T 4a1s_A 210 LK 211 (411)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.66 E-value=0.0023 Score=46.86 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--C-CC----HHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--G-GD----GRGLSRVVRAVV 162 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~-pd----~~tyn~lI~~~~ 162 (229)
..+.+.|++++|+..|+...+... -+...|+.+=..|.+.|++++|.+.|++..+.. . ++ ..+|..+=..|.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 346788999999999988765433 467788888899999999999999998865433 1 12 246777777888
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 026993 163 EAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~ 180 (229)
..|++++|++.|++-.+.
T Consensus 95 ~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 999999999999887663
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.65 E-value=0.0011 Score=55.27 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHc-C--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREY-Q--QQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVV 158 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~-~--~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI 158 (229)
.+...|++++|+..|....+.. . .+. ..+|+.+-..|.+.|++++|...|++..+.- .|+ ..+|+.+-
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 3567789999999998876431 1 122 4588999999999999999999999876321 233 26899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELA-NEVEREFC 217 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A-~~v~~e~~ 217 (229)
..|.+.|++++|.+.|++-.+. +.. .--..+|..+-..+.+.|+.++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSM---ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBC---SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999986542 221 01267888899999999999999 77676543
No 133
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.64 E-value=0.0016 Score=54.46 Aligned_cols=131 Identities=8% Similarity=-0.089 Sum_probs=99.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH---cCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC--HHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE---YQQQ-D-LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGGD--GRGLSRV 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~---~~~p-d-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~pd--~~tyn~l 157 (229)
...+...|++++|+..|....+. ...+ + ..+|+.+-..|.+.|++++|...|++-.+- |.+. ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44567789999999999887543 2212 1 468999999999999999999999875432 2111 3588899
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 158 VRAVVEA-GSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 158 I~~~~~~-g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
=..|.+. |++++|++.|++-.+..-. ..+ ..+|.-+-..+.+.|++++|.+.+++.-+..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 9999996 9999999999987653110 011 357888999999999999999999988886543
No 134
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.64 E-value=0.0019 Score=51.77 Aligned_cols=129 Identities=9% Similarity=-0.002 Sum_probs=92.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAVVE 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~~~ 163 (229)
-..+.+.|++++|+..|+.+.+... .|. ...+..+-.+|.+.|++++|...|++..+.. .+.. ..|-.+-..+.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 3457788999999999999987532 122 3467778899999999999999999987654 2332 133333333333
Q ss_pred ------------------cCCHHHHHHHHHHHHHcCCCCCCCCCHH-HH-----------------HHHHHHHHhcCCHH
Q 026993 164 ------------------AGSKESTVRIYGLMKRSGVGCSWKVDEY-VG-----------------KVLSKGLRRFGEEE 207 (229)
Q Consensus 164 ------------------~g~~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty-----------------~~Li~~~~~~g~~~ 207 (229)
.|+.++|...|++..+.- |+.. .+ -.+-..+.+.|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY------PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTC------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 578999999999998753 4432 11 23455678899999
Q ss_pred HHHHHHHHhhhcCCCC
Q 026993 208 LANEVEREFCWVPGGS 223 (229)
Q Consensus 208 ~A~~v~~e~~~~~~~~ 223 (229)
+|...++++-+..|.+
T Consensus 165 ~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHCcCC
Confidence 9999999888765543
No 135
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.63 E-value=0.0011 Score=57.22 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHH----HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQ-----DLGLLTDLINT----LAKNGLTGEVDRLIGELEEIDGGDGRGLSRV 157 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~p-----d~~ty~~LI~~----~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l 157 (229)
..+..+.+.|+.+.|.+.++.|.+ .. | |-.+-.-|..+ .-..++..+|..+|+++.+. .|+..+-..+
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~-~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lL 217 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTN-AI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHH
Confidence 356778899999999999999965 34 6 23444445444 22234999999999999765 4664444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---------CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRSG---------VGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~g---------~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+++.+.|++++|.+.++.+.+.- -+ -|.-|..-+|......|+ +|.+++.+++...|.
T Consensus 218 ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p----~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 218 LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL----YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS----SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC----CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 558999999999999999776530 11 255566455555556787 899999999887653
No 136
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=0.00011 Score=52.81 Aligned_cols=102 Identities=11% Similarity=-0.114 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHHHHHHc--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 95 QGECAVAVHVFSTIQREY--QQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~--~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.|++++|+..|+...+.. . | +...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQG-KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 577788888887775431 1 3 35678888888999999999999999887654224678888889999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+.|.+..+..-. .|+...|.-.|..+
T Consensus 82 ~~~~~al~~~p~---~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSD---DETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCC---CHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHH
Confidence 999887765322 14444444444443
No 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.55 E-value=0.0015 Score=58.70 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=94.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD---------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRG 153 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd---------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~t 153 (229)
-..+.+.|++++|+..|+...+... .+ ...|+.+-.+|.+.|++++|...|++..+...-+...
T Consensus 275 G~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 275 GTVYFKGGKYMQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhc-ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 4557789999999999998876432 22 5889999999999999999999999987665336889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
|..+=.+|.+.|++++|...|++..+..- -+...|..+-..+.+.|+.++|.+
T Consensus 354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNP-----QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987542 245677778888888888888764
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.0031 Score=49.12 Aligned_cols=101 Identities=10% Similarity=-0.143 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD--------------GRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd--------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
...+..+=..+.+.|++++|...|++..+.. .|+ ...|..+-..|.+.|++++|.+.|.+..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456666678889999999999999987643 221 278889999999999999999999999876
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 181 GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 181 g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.- .+...|..+-..+...|++++|.+.|++..+..+.
T Consensus 118 ~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 118 DK-----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp ST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred Cc-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 42 47788888999999999999999999988776554
No 139
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.53 E-value=0.00017 Score=51.86 Aligned_cols=88 Identities=10% Similarity=-0.022 Sum_probs=70.0
Q ss_pred hcCCHHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 129 KNGLTGEVDRLIGELEEID--GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
..|++++|...|++..+.+ .|+ ...|..+-..|.+.|++++|.+.|++..+..- -+..+|..+-..+.+.|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----NHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHcCC
Confidence 4688999999999988764 243 57899999999999999999999999988753 357788889999999999
Q ss_pred HHHHHHHHHHhhhcCC
Q 026993 206 EELANEVEREFCWVPG 221 (229)
Q Consensus 206 ~~~A~~v~~e~~~~~~ 221 (229)
.++|.+.+++.-+..+
T Consensus 77 ~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 77 YEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999987766543
No 140
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.53 E-value=0.0023 Score=48.22 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHc-----------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 90 RELIRQGECAVAVHVFSTIQREY-----------------QQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~-----------------~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
..+.+.|+++.|+..|....+.. . | +...|..+-.+|.+.|++++|...+++..+...-+.
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 97 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE 97 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch
Confidence 45678999999999998875530 1 2 346788888999999999999999999876553367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
..|..+-.+|...|++++|.+.|.+-.+..
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 899999999999999999999999988753
No 141
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.53 E-value=0.00098 Score=51.25 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g 165 (229)
..-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|+...+.. |+...+..+-.. +.+.+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY-QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-CChHHHHHHHHHHHHhhc
Confidence 445567889999999999988754332 356788999999999999999999999876543 444433322111 22333
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
...+|.+.|++..+..- -|...+..+-..+...|+.++|.+.+++.-+..|.
T Consensus 89 ~~~~a~~~~~~al~~~P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 89 AESPELKRLEQELAANP-----DNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp TSCHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ccchHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 44568899998887542 25788888999999999999999999988877543
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.53 E-value=0.0065 Score=52.20 Aligned_cols=127 Identities=7% Similarity=-0.023 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
-..+...|+++.|+..|....+.+. .++ ..+|+.+=..|...|++++|...|++..+.. .+| ..+|+.
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3456678999999999988765421 122 3578888889999999999999998765432 222 258888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GV-GCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~-~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+=..|...|++++|.+.|++-.+. +. . -...++..+-..+.+.|+.++|.+.+++..+.
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILP----SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988662 33 2 34677888999999999999999999876543
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0014 Score=48.02 Aligned_cols=99 Identities=12% Similarity=-0.033 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGK 194 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~ 194 (229)
.|..|=+.|.+.|++++|...|++..+...-+...|+.+=..|.+.|++++|++.|++-.+..-.. .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHHHHHH
Confidence 455566788999999999999998776542357899999999999999999999999876532100 022 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-+-..+...|++++|.+.|++.-+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7788899999999999999876554
No 144
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.48 E-value=0.0007 Score=56.76 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI-NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI-~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.+-..+.+.|++++|...++.... .. |+........ ..+.+.|+.++|...|.+..+...-|...+..+-..|...|
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~~~-~~-p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTIPL-QD-QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG 233 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCG-GG-CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCch-hh-cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 345667789999999999987743 23 6554333322 33677888888999998876654335788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
++++|.+.|.+..+..-. ..+...+..|...+...|+.++|...+++
T Consensus 234 ~~~~A~~~l~~~l~~~p~---~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLT---AADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp CHHHHHHHHHHHHHHCTT---GGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccc---cccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999999999999876422 13367899999999999999999888875
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.48 E-value=0.0018 Score=54.15 Aligned_cols=92 Identities=10% Similarity=-0.072 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+...|+.+-.+|.+.|++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34567789999999999988766433 36788888999999999999999999988765433578899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 026993 168 ESTVRIYGLMKRS 180 (229)
Q Consensus 168 ~~A~~~f~~M~~~ 180 (229)
++|.+.|.+..+.
T Consensus 89 ~~A~~~~~~al~l 101 (281)
T 2c2l_A 89 DEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 146
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.48 E-value=0.0029 Score=53.79 Aligned_cols=125 Identities=11% Similarity=0.008 Sum_probs=96.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCC-HHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GGD-GRGLSRVVR 159 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~pd-~~tyn~lI~ 159 (229)
..+.+.|++++|+..|+...+... .| ..+|..+-..|...|++++|...|++..+. + .|+ ..+|..+-.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 456789999999999999876532 23 357888999999999999999999875432 2 222 468889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGE--------------------EELANEVERE 215 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~--------------------~~~A~~v~~e 215 (229)
.|...|++++|.+.|.+..+..-. .+| ..++..+-..+...|+ +++|.+.+++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRE---LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999987653110 022 4588889999999999 9999988876
Q ss_pred hhh
Q 026993 216 FCW 218 (229)
Q Consensus 216 ~~~ 218 (229)
..+
T Consensus 173 al~ 175 (406)
T 3sf4_A 173 NLS 175 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 147
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.47 E-value=0.003 Score=55.30 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE---------------YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~---------------~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ 152 (229)
.-..+.+.|++++|+..|+...+. ...-+..+|+.+-.+|.+.|++++|...+++..+...-+..
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 345667899999999999887651 11024567888889999999999999999998866533678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
.|..+=.+|.+.|++++|.+.|++..+..- -|...+..+-..+.+.++.+++.+
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-----~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEIAP-----EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887642 256666777777777776666644
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.46 E-value=0.0022 Score=53.40 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=95.0
Q ss_pred HHhcCCHHHHHHHHHHHHHH-cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----C-C-CCC-HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE-YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE----I-D-GGD-GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~-~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~-g-~pd-~~tyn~lI~ 159 (229)
+...|++++|+..|....+. ....| ..+|+.|-..|.+.|++++|...|++..+ . + .+. ..+|+.+-.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 44567999999999998764 22134 33689999999999999999999998763 1 2 222 348999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH----cCCCCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 026993 160 AVVEAGSKESTVRIYGLMKR----SGVGCSWKVD-EYVGKVLSKGLRRFG-EEELANEVEREFCW 218 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd-~~Ty~~Li~~~~~~g-~~~~A~~v~~e~~~ 218 (229)
.|.+.|++++|.+.|++-.+ .+.. +. ..+|..+-..+.+.| ..++|.+.+++.-.
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISCRINSM----ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBC----TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999999987654 2322 33 578888999999999 46999888876544
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.45 E-value=0.018 Score=46.73 Aligned_cols=118 Identities=8% Similarity=-0.088 Sum_probs=98.1
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026993 90 RELIR----QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAV 161 (229)
Q Consensus 90 ~~l~~----~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~ 161 (229)
..+.+ .+++++|+..|+...+. -+...+..|=..|.+ .|++++|...|++..+.+ +...+..+=..|
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL---KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc---CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 44556 89999999999887652 366788888889999 999999999999988765 667888888888
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 162 VE----AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 162 ~~----~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
.+ .++.++|++.|++-.+.+. ...+..+-..+.. .++.++|.+.+++.-+.
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKD-------SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 88 9999999999999888653 3566678888888 99999999999987665
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.43 E-value=0.0025 Score=54.72 Aligned_cols=101 Identities=6% Similarity=-0.135 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----------------GRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
+...|..+=..|.+.|++++|...|++..+.. |+ ...|+.+-..|.+.|++++|.+.|++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34568888889999999999999999877654 22 58999999999999999999999999988
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 180 SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 180 ~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..- -+...|..+-..+...|++++|.+.|++.-+..|.
T Consensus 225 ~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 225 LDS-----NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 652 47788999999999999999999999988776554
No 151
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.42 E-value=0.004 Score=52.39 Aligned_cols=125 Identities=11% Similarity=-0.087 Sum_probs=90.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--CHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY---QQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGG--DGRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~---~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~p--d~~tyn~ 156 (229)
+-..+.+.|++++|+..|+...+.+ .+++ ..+|+.+=..|.+ |++++|...|++-.+. |.+ -..+|+.
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3455667899999999988765431 1122 3467777778888 9999999999875432 211 1468888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
+-..|.+.|++++|++.|++..+. +.. ++. .+|..+...+...|+.++|.+.+++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENY----PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999988653 221 222 356666677777799999999999877
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0019 Score=48.73 Aligned_cols=99 Identities=10% Similarity=-0.118 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEI------------------DGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~------------------g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
.+...=..+.+.|++++|...|.+-.+. ..-+...|+.+-.+|.+.|++++|+..|.+..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666888999999999999876543 1112468999999999999999999999999876
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 181 GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 181 g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.- -+...|..+-.++...|++++|.+.++..-+..|.
T Consensus 93 ~p-----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 93 EE-----TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CC-----cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 53 46788899999999999999999999987776544
No 153
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00021 Score=49.81 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
+...|..+-..+.+.|++++|.+.|++..+....+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556677778888888888888888876544235677888888888888888888888888764
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.40 E-value=0.0049 Score=51.40 Aligned_cols=56 Identities=7% Similarity=-0.205 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
-..+.+.|++++|+..|+...+... -+...|..+-.+|.+.|++++|...|.+..+
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 45 ALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566777777777666543222 3455666666777777777777777766544
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.37 E-value=0.0014 Score=55.85 Aligned_cols=128 Identities=12% Similarity=-0.095 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVV 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~ 162 (229)
.....|...|++++|.++|+.+.. .. |+-...-.+-..+.+.|+.++|+..|+.... .||. ..+..+=.++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~-~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~--~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV-AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK--WPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC-TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc--cCCcccHHHHHHHHHHHHH
Confidence 345668889999999999977743 22 5443555566689999999999999985543 3432 35666777899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+.|++++|++.|++-...... |. .-..-..-.++.+.|+.++|..+|+++....|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~----P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAG----EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTT----TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HCCCHHHHHHHHHHHhcCCCC----ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999988754332 54 223445677788999999999999999887654
No 156
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.35 E-value=0.0032 Score=49.90 Aligned_cols=113 Identities=16% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhCCC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTD----------------LINTLAKNGLTGEVDRLIGELEEIDG 148 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~----------------LI~~~~k~g~~~~A~~lf~~M~~~g~ 148 (229)
+.--..+.+.|++++|+..|+...+. . | +...|.. +-..|.+.|++++|...|++..+...
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL-N-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33445677899999999999988663 2 4 3345555 77889999999999999999877653
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-+...|..+-..|...|++++|.+.|++..+..- -+..+|..+-..+...|+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-----DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhH
Confidence 3678999999999999999999999999988652 356777777777765554
No 157
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.33 E-value=0.014 Score=50.21 Aligned_cols=127 Identities=12% Similarity=-0.027 Sum_probs=98.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
-..+...|+++.|+..+....+.+. .++ ..+|+.+=..|...|++++|.+.|++..+.. .++ ..+|+.
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456778999999999988765411 122 4567788889999999999999998765421 122 357888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKR----SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|=..|...|++++|.+.|.+-.+ .+.+ -...++..+-..+.+.|+.++|.+.+++..+.
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPD----LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999998765 1332 23678888999999999999999999987765
No 158
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.33 E-value=0.0011 Score=62.59 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=101.3
Q ss_pred HhcCCHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 93 IRQGECAVAVHVFSTIQ--------REYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~--------~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
...|++++|++.|+... +... .+...|..+-..|.+.|++++|...|++..+...-|...|+.+=..|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 57899999999999887 3222 35677888889999999999999999998765433678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|++++|.+.|++..+..- -+...|..+-..+.+.|++++ .+.|++.-+..+.
T Consensus 481 g~~~~A~~~~~~al~l~P-----~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-----GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 999999999999987652 256778889999999999999 9998887665544
No 159
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0023 Score=45.35 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 101 AVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 101 A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
|+..|+...+... .+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555655544333 467788888899999999999999999887654335678899999999999999999999987654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh
Q 026993 181 GVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 181 g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
.-. .++.....-+...+.+
T Consensus 83 ~~~---~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 83 AQS---RGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHH---HTCHHHHHHHHHHHHH
T ss_pred ccc---cccHHHHHHHHHHHHH
Confidence 211 1344555444444443
No 160
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0093 Score=39.54 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCHHHHHHH
Confidence 345666667777888888888888776654322566777777888888888888888887776532 244455544
Q ss_pred HHHHHh
Q 026993 197 SKGLRR 202 (229)
Q Consensus 197 i~~~~~ 202 (229)
-..+.+
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444433
No 161
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.15 E-value=0.016 Score=49.32 Aligned_cols=127 Identities=7% Similarity=-0.116 Sum_probs=94.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH--cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-C--CC-HHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE--YQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEI----D-G--GD-GRGLS 155 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~--~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~--pd-~~tyn 155 (229)
..+...|+++.|...+.+.... -. .+. .+++.+-..|...|++++|...+++..+. + . |. ..+++
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 139 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 4456789999999999887654 12 332 33566777888999999999999876542 2 1 32 35677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+-..|...|++++|.+.+.+-.+..-.. .+ ...+|..+-..+...|++++|...+++....
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSY--QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888999999999999999888765320 01 2467888888999999999999999988776
No 162
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.14 E-value=0.035 Score=47.07 Aligned_cols=89 Identities=11% Similarity=-0.031 Sum_probs=48.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH---cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC----HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE---YQQQ----DLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD----GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~---~~~p----d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd----~~tyn~lI~ 159 (229)
+...|++++|...++...+. ...+ ....++.+-..|...|++++|...+++..... ... ..+|..+-.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 44566666666666665433 1101 12344445556666666666666666654433 221 235556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 026993 160 AVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~ 180 (229)
.+...|++++|.+.+++....
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 163
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.0039 Score=44.06 Aligned_cols=81 Identities=9% Similarity=-0.093 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 134 GEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 134 ~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...|..+-..+...|+.++|.+.+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3577778877665433678999999999999999999999999987653 46778888999999999999999999
Q ss_pred HHhhhc
Q 026993 214 REFCWV 219 (229)
Q Consensus 214 ~e~~~~ 219 (229)
++.-+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876554
No 164
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0059 Score=54.80 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--C
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE----YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-----ID--G 148 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~----~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-----~g--~ 148 (229)
+++..+..+.++|++++|+.+++...+. +. |+ ..+++.|...|...|++++|..++.+..+ -| .
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg-~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP-DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC-TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCC-ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 4556678888999999999999887643 34 33 35788999999999999999999987653 34 5
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 149 GDG-RGLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 149 pd~-~tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
|++ .+|+.|=..|...|++++|..+|++-.
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 554 789999999999999999999998654
No 165
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.05 E-value=0.017 Score=49.55 Aligned_cols=125 Identities=10% Similarity=-0.089 Sum_probs=96.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVV 158 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI 158 (229)
.+...|++++|+..|....+... .+| ..+|..+=..|...|++++|...|.+-.+.- .++ ..+++.+=
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34578999999999998865411 133 3578888899999999999999998765432 222 36888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
..|...|++++|.+.|.+..+. +.. .-...+|..+-..+...|+.++|.+.+++.-+
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQP---QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999887643 221 01124788899999999999999999987766
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.02 E-value=0.012 Score=49.49 Aligned_cols=126 Identities=10% Similarity=-0.080 Sum_probs=94.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH---cCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCC--HHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE---YQQQ--DLGLLTDLINTLAKNGLTGEVDRLIGELEE----IDGGD--GRGLSRV 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~---~~~p--d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g~pd--~~tyn~l 157 (229)
...+...|++++|...|.+..+. ...+ -..+|+.+-..|.+.|++++|...|++-.+ .|.++ ..+|+.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567789999999999887654 1101 145788899999999999999999986432 23222 3678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
=..|.+ |++++|++.|++-.+. |-. + -..+|.-+-..+.+.|++++|.+.+++.-+.
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERL----RQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888 9999999999887542 211 1 1467888899999999999999999877654
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.99 E-value=0.006 Score=44.25 Aligned_cols=99 Identities=16% Similarity=-0.019 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCC
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKRS----GVGCSWK 187 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~ 187 (229)
.+|..+-..|...|++++|...|.+..+.. .++ ..+|+.+-..|...|++++|.+.|++..+. +-. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~ 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---A 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---H
Confidence 457777788999999999999998865432 122 258889999999999999999999987643 211 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
....++..+-..+...|++++|.+.+++.-+.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11457788888999999999999999876543
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.98 E-value=0.0016 Score=56.11 Aligned_cols=125 Identities=12% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG------------------LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~------------------ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
..+.+.|++++|+..|....+. . |+.. .|+.+-.+|.+.|++++|...|++..+...-+.
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~-~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY-M-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH-S-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH-h-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3445688999999999886543 3 4433 788888899999999999999998776543367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE-YVGKVLSKG-LRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~-~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..|..+-.+|...|++++|.+.|.+..+.. |+. ..+..|-.. ....+..+.+.++++.+-...+.
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKYA------PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 899999999999999999999999886542 443 333333333 22345666777888776555443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.94 E-value=0.0074 Score=54.56 Aligned_cols=93 Identities=6% Similarity=-0.192 Sum_probs=79.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
.|.+.|++++|.+.|++..+...-+..+|+.+-..|.+.|++++|.+.|++..+..- -+...|..+-..+.+.|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCC
Confidence 456789999999999987765423578999999999999999999999999988642 467888999999999999
Q ss_pred HHHHHHHHHHhhhcCCCC
Q 026993 206 EELANEVEREFCWVPGGS 223 (229)
Q Consensus 206 ~~~A~~v~~e~~~~~~~~ 223 (229)
+++|.+.+++.-+..+..
T Consensus 90 ~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999887765443
No 170
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.93 E-value=0.018 Score=49.44 Aligned_cols=124 Identities=10% Similarity=-0.029 Sum_probs=94.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI~ 159 (229)
+...|++++|+..|....+... .+| ..+|+.+-..|...|++++|...+.+-.+.. .++ ..+|+.+=.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3578999999999998865411 133 4578888889999999999999998755422 122 458888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 160 AVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.|...|++++|.+.|.+-.+. |.. .....++..|-..+...|+.++|.+.+++.-+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999887542 221 01235777888899999999999999987665
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.90 E-value=0.011 Score=51.73 Aligned_cols=99 Identities=8% Similarity=-0.111 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEE----------------IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~----------------~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
.|..+=..|.+.|++++|.+.|++..+ ...-+..+|+.+-..|.+.|++++|.+.|++..+..-
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 466777789999999999999987664 1112457899999999999999999999999987542
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 183 GCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 183 ~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-+...|..+-.++.+.|++++|.+.+++..+..+.
T Consensus 305 -----~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 305 -----SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 36778888999999999999999999988776554
No 172
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.013 Score=52.59 Aligned_cols=84 Identities=5% Similarity=-0.068 Sum_probs=58.3
Q ss_pred hcCCHHHHHHHHHHHHHH----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--CCCH-HHHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE----YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-----ID--GGDG-RGLSRV 157 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~----~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-----~g--~pd~-~tyn~l 157 (229)
..|++++|+.+++...+. +. |+ ..+|+.|-..|...|++++|..++++..+ -| .|++ .+||.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456778888887775432 44 33 24677788888888888888888876542 24 4553 578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 026993 158 VRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~ 178 (229)
=..|...|++++|..+|++-.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 888888888888888877643
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.89 E-value=0.018 Score=51.62 Aligned_cols=101 Identities=9% Similarity=-0.121 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-------------GRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
...|..+=..|.+.|++++|...|++..+.. .++ ...|+.+-.+|.+.|++++|++.|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3467778889999999999999999876543 111 5899999999999999999999999998865
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 182 VGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 182 ~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
- -+...|.-+-.+|...|++++|.+.|++..+..+.
T Consensus 348 p-----~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 348 S-----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred C-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 46788888999999999999999999988877554
No 174
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.87 E-value=0.0066 Score=42.26 Aligned_cols=84 Identities=12% Similarity=-0.039 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
|...|..+-..|.+.|++++|...|++..+...-+...|..+=..|.+.|++++|.+.|++-.+..-. .+|.....-
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE---EGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc---CCchhHHHH
Confidence 45667777788888888888888888877654224567888888888888888888888876643211 155555554
Q ss_pred HHHHHHh
Q 026993 196 LSKGLRR 202 (229)
Q Consensus 196 Li~~~~~ 202 (229)
+-..+.+
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 175
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0037 Score=43.22 Aligned_cols=85 Identities=18% Similarity=0.067 Sum_probs=62.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-------HHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-------GRGLSRVVRA 160 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-------~~tyn~lI~~ 160 (229)
.-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.. |+ ...+..+-.+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHH
Confidence 33456789999999999999876544 467889999999999999999999999987654 33 3445555555
Q ss_pred HHHcCCHHHHHHHH
Q 026993 161 VVEAGSKESTVRIY 174 (229)
Q Consensus 161 ~~~~g~~~~A~~~f 174 (229)
+...|+.+.|.+.|
T Consensus 88 ~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 88 QGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHCCCCCSSSS
T ss_pred HHHHHhHhhhHhHH
Confidence 55555555554444
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.71 E-value=0.044 Score=42.54 Aligned_cols=90 Identities=12% Similarity=0.011 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC--------HH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhC----C--C
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD--------LG-----LLTDLINTLAKNGLTGEVDRLIGELEEI----D--G 148 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd--------~~-----ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g--~ 148 (229)
.=..+.+.|++++|+..|+...+. . |+ .. .|+.+=.++.+.|++++|...|++-.+. | .
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l-~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI-S-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-H-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh-C-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334567889999999999887653 2 33 22 7888888888999999998888876554 2 3
Q ss_pred CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 149 GD-GRGL----SRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 149 pd-~~ty----n~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
|| ...| ...=.++...|++++|+..|++-.+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 54 4577 7777888888889999888887654
No 177
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.71 E-value=0.0085 Score=53.90 Aligned_cols=88 Identities=6% Similarity=-0.064 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHhhh---C--C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCH-HHHH
Q 026993 129 KNGLTGEVDRLIGELEE---I--D--GGDG-RGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDE-YVGK 194 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~---~--g--~pd~-~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~-~Ty~ 194 (229)
+.|++++|..++++..+ + | .|++ .++|.|-..|...|++++|..++++..+ .|-. .||. .+|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---Hp~~a~~l~ 386 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY---SLNVASMWL 386 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS---CHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC---ChHHHHHHH
Confidence 35789999999987543 2 2 3443 6999999999999999999999998754 3543 3765 5789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-|-..|...|+.++|+.++++..++
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999866553
No 178
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.70 E-value=0.047 Score=35.94 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+...-+...+..+-..+.+.
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 3456788999999999998876443 46778889999999999999999999997765422456666665555543
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.67 E-value=0.012 Score=53.68 Aligned_cols=91 Identities=15% Similarity=-0.053 Sum_probs=72.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-----C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCH-
Q 026993 125 NTLAKNGLTGEVDRLIGELEEI-----D--GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDE- 190 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~-----g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~- 190 (229)
..+-..|++++|..++++..+. | .|+ ..++|.|-..|...|++++|..++++..+ .|-. .|+.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---Hp~~a 393 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN---NAQLG 393 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT---CHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC---CHHHH
Confidence 3466789999999999875432 2 344 36999999999999999999999988653 3543 3665
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 191 YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 191 ~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+|+-|-..|...|++++|+.++++..+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999986554
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.14 Score=44.11 Aligned_cols=132 Identities=8% Similarity=-0.129 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhh----CC-CCC-HHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREY-QQQDLG----LLTDLINTLAKNGLTGEVDRLIGELEE----ID-GGD-GRG 153 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~-~~pd~~----ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g-~pd-~~t 153 (229)
+..+...+.+.|++++|.+.+....+.. ..++.. +++.+=..+...|+.++|..++.+... .+ .+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3456677889999999999998876541 102221 222222334456899999999987643 23 333 468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRS--GVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+..|...|...|++++|..++.+.... +..- +|. ..+|..++..|...|++++|..+++....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDD--KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC--STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 889999999999999999999987542 2110 132 45788999999999999999999986654
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.64 E-value=0.021 Score=44.39 Aligned_cols=96 Identities=13% Similarity=-0.042 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID-G-G-----DG-----RGLSRVVRAVVEAGSKESTVRIYGLMKRS-----GV 182 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g-~-p-----d~-----~tyn~lI~~~~~~g~~~~A~~~f~~M~~~-----g~ 182 (229)
+...=..+.+.|++++|...|++-.+-. . | +. ..|+.+=.++.+.|++++|+..|++-++. -+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445567888999999999999866543 1 1 23 38999999999999999999999988775 11
Q ss_pred CCCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 183 GCSWKVDE-YVG----KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 183 ~~~~~Pd~-~Ty----~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
. ||. -.| .-.-.++...|++++|.+.|+..-+.
T Consensus 94 ~----pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N----QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T----STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C----CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 654 466 67788999999999999999977665
No 182
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.02 Score=51.24 Aligned_cols=94 Identities=12% Similarity=-0.139 Sum_probs=74.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCC
Q 026993 123 LINTLAKNGLTGEVDRLIGELEEID----GGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVD 189 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M~~~g----~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd 189 (229)
.|..+.+.|++++|..++++..+.. .|+ ..++|.|...|...|++++|..++.+..+ .|-. .|+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~---Hp~ 369 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS---HPV 369 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS---CHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC---ChH
Confidence 3556778899999999999876431 232 36999999999999999999999998753 3433 366
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 190 E-YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 190 ~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
. .+|+-|-..|...|++++|..++++..++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5 67899999999999999999999866553
No 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.031 Score=48.82 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI 146 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~ 146 (229)
|+.++|.+.++....... .+...++.+-..|.+.|++++|...|.+..+.
T Consensus 227 ~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp ---CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 456667777766544333 45566777777777777777777777765543
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.099 Score=45.54 Aligned_cols=130 Identities=12% Similarity=-0.048 Sum_probs=88.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHhhhCCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK-------------------NGLTGEVDRLIGELEEIDG 148 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k-------------------~g~~~~A~~lf~~M~~~g~ 148 (229)
+-..+.+.|+++.|+..|....+... -+..+|..+-..|.. .+..++|...|.+..+...
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 34556788999999999998866433 345566655444432 2346778888887665443
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSK-GLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~-~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+..+|..+-..|.+.|++++|.+.|++..+.... |+. ..+..+-. .....|+.++|.+.+++.-++.+.
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 34567888999999999999999999998876542 221 12222222 234789999999999887666543
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.46 E-value=0.015 Score=49.88 Aligned_cols=99 Identities=10% Similarity=-0.064 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR------------------GLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~------------------tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
..|..+=..|.+.|++++|...|.+.... .|+.. .|+.+-..|.+.|++++|.+.|.+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY-MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH-SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667788899999999999986543 24433 888999999999999999999999887
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 180 SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 180 ~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..- -+...|.-+-.++...|++++|.+.|++..+..+.
T Consensus 259 ~~p-----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 259 EEE-----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred hCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 642 46788899999999999999999999988776543
No 186
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.45 E-value=0.041 Score=52.24 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
+..++-..+.|..+.|..+|...++. .. .+.+++..+.|...+ .++.+.|..+|+...+.-.-+...|...+.-..+
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 34455556788999999999998765 22 144555555544322 3559999999998765422256678899998889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.|+.+.|..+|+.-....-. .+-....|...++-=.+.|..+.+.+|.+.+.+..|.+
T Consensus 517 ~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999988765321 00034678888888899999999999999999887654
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.40 E-value=0.087 Score=50.00 Aligned_cols=126 Identities=7% Similarity=-0.055 Sum_probs=92.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc----------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY----------QQQD------------LGLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~----------~~pd------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
.+.-..+.|+++.|.++|+...+.+ . |+ ..+|...+...-+.|.++.|..+|....+
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455567899999999999886531 2 32 24688888888899999999999999876
Q ss_pred C-C--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 146 I-D--GGDGRGLSRVVRAVVEA-GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 146 ~-g--~pd~~tyn~lI~~~~~~-g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
. + .+.+....+.|- .+. ++.+.|..+|+...+. ++ -+...+...++-+...|+.+.|+.+|+..-...+
T Consensus 463 ~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FA----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred hcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CC----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 5 4 333444444444 333 4589999999988775 42 2445557888888899999999999998766543
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.33 E-value=0.064 Score=54.93 Aligned_cols=108 Identities=12% Similarity=-0.055 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
++..+=..|...|++++|...|... ..|..+...|++.|++++|.+.+.+-. |..+|.-+-.+|..
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHHhh
Confidence 3344555566677777777777554 247788888888888888888877652 45666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.|.++.|..+.-... -+.-.+.-+++.|.+.|.+++|..+++
T Consensus 1263 ~~Ef~LA~~cgl~Ii---------v~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIV---------VHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred hhHHHHHHHHHHhhh---------cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655443221 122334467777777777777777664
No 189
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.28 E-value=0.3 Score=38.41 Aligned_cols=116 Identities=13% Similarity=0.014 Sum_probs=52.5
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cC
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG----LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AG 165 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g----~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g 165 (229)
..++.++|++.|....+. -+...+..|=..|.. | +.++|.+.|.+-.+.| +...++.|=..|.. .+
T Consensus 30 ~~~~~~~A~~~~~~a~~~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 30 SSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGAT 103 (212)
T ss_dssp HHTCHHHHHHHHHHHHHT---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcc
Confidence 345555555555544331 123333333334444 3 5555555555544433 33444444444443 44
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~ 218 (229)
+.++|++.|.+-.+.|.. .-+...+..|-..|.. .++.++|.+.|+..-+
T Consensus 104 d~~~A~~~~~~A~~~~~~---~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSES---DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp CHHHHHHHHHHHTSSTTS---HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC---cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 555555555555444320 0013344444444444 4455555555554433
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.25 E-value=0.034 Score=38.45 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|...|..+=..|.+.|++++|.+.|++..+..- -+...|..+-..+.+.|++++|.+.+++.-+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467888999999999999999999999988653 35568888999999999999999999866543
No 191
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.10 E-value=0.12 Score=53.08 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=39.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-+++.+.|++++|++-|..- -|...|.-++..+.+.|++++|.+.+..-.+.. ++....+.+..+|++.+++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCH
Confidence 334555566666666655221 344556666666666666666666665433322 1222222355556665555
Q ss_pred H
Q 026993 168 E 168 (229)
Q Consensus 168 ~ 168 (229)
+
T Consensus 1184 e 1184 (1630)
T 1xi4_A 1184 A 1184 (1630)
T ss_pred H
Confidence 5
No 192
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.01 E-value=0.085 Score=45.08 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+......+.+.+.+.|+.++|.++++++.+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4667888888999999999999999999875
No 193
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.95 E-value=0.047 Score=36.95 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
..+.+.|++++|+..|+...+... .+.. .|..+=..|.+.|++++|...|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677888888888877765433 3455 67777777888888888888888766544
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.07 Score=45.97 Aligned_cols=127 Identities=9% Similarity=0.011 Sum_probs=90.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQDL---------------GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD 150 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd~---------------~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd 150 (229)
-+.+.+.|++++|++.|..+.+... ..|. ..+..|...|.+.|++++|.+.+......- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567789999999999999876421 0111 236788899999999999999998875432 222
Q ss_pred H---HHHHHHHH-HHHHcCCHHHHHHHHHHHHH----cCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 151 G---RGLSRVVR-AVVEAGSKESTVRIYGLMKR----SGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 151 ~---~tyn~lI~-~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
. .....++. .+...|..++|.+++.+... .+.. +. ..++..|.+.+...|++++|.++++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV----FLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC----SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 2 22233333 33356799999999987753 3332 33 457788999999999999999999987765
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.91 E-value=0.018 Score=39.16 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 124 INTLAKNGLTGEVDRLIGELEEIDGGDGR-GLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g~pd~~-tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
-..+.+.|++++|...|++..+...-+.. .|..+=..|.+.|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34677899999999999998765422456 88889899999999999999999998764
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.70 E-value=0.11 Score=40.32 Aligned_cols=114 Identities=11% Similarity=-0.098 Sum_probs=83.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCC-CHHHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL----------TGEVDRLIGELEEIDGG-DGRGLSRVVRA 160 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~----------~~~A~~lf~~M~~~g~p-d~~tyn~lI~~ 160 (229)
..|.+.+++|++.++...+.-. -|...|+.+=.++.+.|+ +++|...|++-.+-. | +...|+.+=.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 4566778889988888766433 366677766667777665 569999999876654 4 46789999999
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 161 VVEAG-----------SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 161 ~~~~g-----------~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+.| ++++|.+.|++-.+.. |+..+|.--+... +.|.++.-++.+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~------P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ------PDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHH------HhCHhccCccccc
Confidence 98875 8999999999998753 8888886555433 4566666666665
No 197
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.68 E-value=0.16 Score=47.49 Aligned_cols=85 Identities=9% Similarity=-0.099 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..|=..+.+.|+++.|.+.|..+.. |..+..-|...|+.+...++-+.....|- |+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----------~~~ 741 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK----------FNL 741 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------HHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----------hHH
Confidence 445566666666666666666666666542 33444444445555544444333333332 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 026993 196 LSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
-...+.+.|++++|.+++.++.+
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHcCC
Confidence 34446667888888888776665
No 198
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.59 E-value=1.1 Score=39.60 Aligned_cols=48 Identities=4% Similarity=-0.062 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 026993 130 NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AGSKESTVRIYGLMKR 179 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g~~~~A~~~f~~M~~ 179 (229)
.++.++|.+.|.+-.+.| +...+..|-..|.. .++.++|.++|++-.+
T Consensus 200 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 344444444444433322 23333333333333 3444444444444443
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.59 E-value=0.95 Score=40.00 Aligned_cols=112 Identities=7% Similarity=-0.073 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG---LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AGSKE 168 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g---~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g~~~ 168 (229)
++.++|+..|....+. -+...+..|=..|.+.| +.++|.+.|.+-.+.| +...+..|=..|.. .++.+
T Consensus 310 ~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 5677777666665442 23345555555666555 6677777777766554 55667777777777 67778
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
+|++.|++-.+.|. | ..+..|-..|.+ .++.++|.+.|+...+.
T Consensus 385 ~A~~~~~~A~~~~~-----~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 385 QAAIWMRKAAEQGL-----S--AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHTTC-----H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----H--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 88888877776553 3 344445555555 67888887777765543
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.58 E-value=1.2 Score=41.14 Aligned_cols=118 Identities=8% Similarity=-0.068 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG--LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG-SKESTVRIY 174 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g--~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g-~~~~A~~~f 174 (229)
++++++.++.+.+... -+..+|+.=-..+.+.| ++++|.+.++++.+...-|..+|+---..+.+.| ..+++++.+
T Consensus 89 ~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 8899999999876543 46667877777788888 7799999999999876458899999988889999 899999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhcCC
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRF--------------GEEELANEVEREFCWVPG 221 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~--------------g~~~~A~~v~~e~~~~~~ 221 (229)
+++.+... -|...|+-.-..+.+. +.+++|.+.+++.-+..|
T Consensus 168 ~~~I~~~p-----~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 168 DSLITRNF-----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp HTTTTTTC-----CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHCC-----CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 99998765 4777777666666553 556788888776655433
No 201
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.39 E-value=0.24 Score=38.92 Aligned_cols=107 Identities=11% Similarity=0.033 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 026993 101 AVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG----SKESTVRIYGL 176 (229)
Q Consensus 101 A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g----~~~~A~~~f~~ 176 (229)
|++.|....+ . -|...+..|=..|...|++++|.+.|.+-.+.| +...++.|=..|.. | +.++|++.|++
T Consensus 5 A~~~~~~aa~--~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAE--A-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4455555443 1 466677778788888999999999999988766 56677777666777 6 89999999999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcC
Q 026993 177 MKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWVP 220 (229)
Q Consensus 177 M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~~ 220 (229)
-.+.|. | ..+..|-..|.. .++.++|.+.+++..+..
T Consensus 79 A~~~g~-----~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 79 AVEAGS-----K--SGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp HHHTTC-----H--HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred HHHCCC-----H--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 988775 3 445555556655 889999999999877654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.31 E-value=0.57 Score=34.34 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AGSKESTVR 172 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g~~~~A~~ 172 (229)
+.++|++.|..-.+.-. ++.. |=..|...+.+++|.+.|.+-.+.| +...++.|=..|.. .++.++|++
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 56678877777655322 4433 4455666678888999998877765 66777777777777 789999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
.|++-.+.|. | ..+..|-..|.. .++.++|.+.++...+.
T Consensus 83 ~~~~Aa~~g~-----~--~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLND-----Q--DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTTC-----H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCC-----H--HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9998888775 3 344446666666 78999999998876554
No 203
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.17 E-value=0.064 Score=45.51 Aligned_cols=90 Identities=8% Similarity=-0.138 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE----YVGKVL 196 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~L 196 (229)
-.....|...|++++|.++|+.+...+ |+....-.+-..+.+.|++++|+..|...... ||. ..+-.|
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~L 177 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHH
Confidence 445677889999999999999998654 54435555556899999999999999744321 322 356778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 026993 197 SKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~ 218 (229)
-.++.+.|++++|...|++.-.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999999999997753
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.65 E-value=1.7 Score=36.89 Aligned_cols=116 Identities=5% Similarity=-0.164 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH-
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTL----AKN---GLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE- 168 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~----~k~---g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~- 168 (229)
.++++++.++.+.+... -+..+|+.=-..+ .+. ++++++..+++.+.+...-|-.+|+---..+.+.|+.+
T Consensus 84 ~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 77777877777765422 2333344322222 334 67777888887777655336777777777777777777
Q ss_pred -HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhhh
Q 026993 169 -STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE------EELANEVEREFCW 218 (229)
Q Consensus 169 -~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~------~~~A~~v~~e~~~ 218 (229)
++++.+++|.+... -|-..|+---..+.+.|+ ++++.+.++++-+
T Consensus 163 ~~EL~~~~~~i~~d~-----~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 163 AKELSFVDKVIDTDL-----KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 77888888877665 366666544444555554 5666666554443
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.68 E-value=0.82 Score=40.44 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 119 LLTDLINTLAKNG---LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA----GSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 119 ty~~LI~~~~k~g---~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~----g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
.+..|=..|.+.| +.++|.+.|..-.+.|.++...+..|=..|... ++.++|++.|++.. .|. |+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~-----~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY-----PASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS-----THHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC-----HHHH
Confidence 5666666666666 666677777666665544444444444444333 46666666666655 443 3332
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHhh
Q 026993 192 VGKVL--SKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 192 Ty~~L--i~~~~~~g~~~~A~~v~~e~~ 217 (229)
..-.. ..+ ...|+.++|.+.|++.-
T Consensus 252 ~~Lg~~~~~~-~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 252 VSLAQLLYDF-PELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHHS-GGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHH
Confidence 22111 111 23566666666665443
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.67 E-value=3.1 Score=35.77 Aligned_cols=118 Identities=8% Similarity=-0.073 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG--LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS-KESTVRIY 174 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g--~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~-~~~A~~~f 174 (229)
+++++.+++.+..... -+..+|+.=-..+.+.| .++++..+++.+.+...-|...|+---..+.+.|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5678888888876544 46677777777777878 48999999999998765588999998888889998 69999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhcCC
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRF--------------GEEELANEVEREFCWVPG 221 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~--------------g~~~~A~~v~~e~~~~~~ 221 (229)
.++.+... -|...|+-.-..+.+. +.++++.+.++..-...|
T Consensus 169 ~~~I~~~p-----~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 169 DSLITRNF-----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp HHHHHHCS-----CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHCC-----CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 99998876 4776776555555544 456777777776555443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.58 E-value=0.21 Score=38.58 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=71.1
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK----------ESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~----------~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
.-|.+++++|.+.++.-.+...-|...|+.+=.++...|++ ++|+..|++-.+..- -+...|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-----~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-----CcHHHHHHH
Confidence 34667899999999987765423677888777788887764 599999999887652 256788889
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFG-----------EEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g-----------~~~~A~~v~~e~~~~~~~~ 223 (229)
-++|...| ++++|.+.|+..-+..|..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 99998774 8999999999887765543
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.55 E-value=2 Score=37.74 Aligned_cols=117 Identities=7% Similarity=-0.079 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH----hcC----CHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcC
Q 026993 97 ECAVAVHVFSTIQREYQQQD-LGLLTDLINTLA----KNG----LTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~----k~g----~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g 165 (229)
....|+.+|++..+ .. |+ ...|..+--+|. ..+ ..+....-+....... ..+..+|..+-..+...|
T Consensus 214 ~~~~A~~l~e~Al~-lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQ-SS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 35678888988765 33 54 234443332222 111 1111122222222212 457788888877778889
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++++|.+.+++..... |+...|..+-..+.-.|+.++|.+.+.+..+..|
T Consensus 292 d~d~A~~~l~rAl~Ln------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999874 8888888888999999999999999988777654
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.49 E-value=1.2 Score=40.07 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHc
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~ 164 (229)
..++-..+.+..+.|..+|+.. +... ..++....+.+...+ .++.+.|..+|+...+.. |+ ...|...|+-..+.
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHc
Confidence 3344445677899999999888 3211 023333334444333 336999999999876543 22 34577788888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|+.+.|..+|+.. . -....|...++-=...|+.+.+++++++....
T Consensus 368 ~~~~~aR~l~er~-----~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 368 GDEENARALFKRL-----E----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp TCHHHHHHHHHHS-----C----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999886 2 35677888888777889999999988877653
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.37 E-value=2.4 Score=36.82 Aligned_cols=120 Identities=5% Similarity=-0.216 Sum_probs=92.0
Q ss_pred hcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH--
Q 026993 94 RQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN-G-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE-- 168 (229)
Q Consensus 94 ~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~-g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~-- 168 (229)
..| .+++++++++.+.+... -+..+|+.--..+.+. + +.+++.++++.+.+...-|..+|+---..+.+.|+.+
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc
Confidence 345 59999999999876543 4666777766667666 6 8899999999999776448889998777777777777
Q ss_pred ------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHhhhc
Q 026993 169 ------STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE-------EELANEVEREFCWV 219 (229)
Q Consensus 169 ------~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~-------~~~A~~v~~e~~~~ 219 (229)
++++.+++|.+... -|...|+---..+.+.|+ ++++.+..++.-+.
T Consensus 179 ~~~~~~eELe~~~k~I~~dp-----~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDG-----RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 99999999999876 488888777777777776 56777766655443
No 211
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.93 E-value=3.2 Score=36.58 Aligned_cols=114 Identities=9% Similarity=0.002 Sum_probs=71.1
Q ss_pred HHhcC---CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-H--
Q 026993 92 LIRQG---ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN----GLTGEVDRLIGELEEIDGGDGRGLSRVVRA-V-- 161 (229)
Q Consensus 92 l~~~g---~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~----g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~-- 161 (229)
+.+.| +.++|++.|....+.-. ++...+..|=..|... ++.++|.+.|.... .| +...++.|=.. |
T Consensus 186 ~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g--~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 186 YQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG--YPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--STHHHHHHHHHHHHS
T ss_pred HHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHhC
Confidence 44567 77778877776655333 4555445555566544 68888888888876 44 33344444443 2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhh
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG-----EEELANEVEREFC 217 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g-----~~~~A~~v~~e~~ 217 (229)
...|+.++|++.|.+-.+.|. |+. +..|-..|. .| +.++|.+.|+..-
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g~-----~~A--~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAADQ-----PRA--ELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTTC-----HHH--HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHCCC-----HHH--HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 357788888888888877764 333 333434443 45 7778877776544
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.84 E-value=4.8 Score=36.94 Aligned_cols=125 Identities=6% Similarity=-0.110 Sum_probs=91.0
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 89 LRELIRQGEC-AVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGL----------TGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~-~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~----------~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
+.++.+.|+. ++|++.++.+.+. . |+ ...|+.==..+.+.|+ +++|.+.++++.+...-+..+|+-
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~-n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA-N-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH-C-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344455554 4679999888663 3 44 3445543333444455 999999999998765236788998
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhcC
Q 026993 157 VVRAVVEAG--SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG-EEELANEVEREFCWVP 220 (229)
Q Consensus 157 lI~~~~~~g--~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g-~~~~A~~v~~e~~~~~ 220 (229)
=-..+-+.| ++++|++.+++|.+... -|-..|+----.+.+.| ..+++.+.++++-+..
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~-----~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhcc-----ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 888888999 77999999999998765 57788877777778888 8888888877665543
No 213
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.58 E-value=4.3 Score=34.83 Aligned_cols=120 Identities=7% Similarity=-0.153 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc-----------
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL-TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA----------- 164 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~----------- 164 (229)
.+++++.+++.+.+... .|-..|+---..+.+.|. .+++.+.++++.+...-|...|+-.-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 48899999999987654 577778777777788888 69999999999877655788998887777765
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhcCCC
Q 026993 165 ---GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF-----------GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 165 ---g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~-----------g~~~~A~~v~~e~~~~~~~ 222 (229)
+.++++++.+.+.....- =|...|+-+--.+.+. +.++++.+.++|+-+..|.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P-----~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDP-----NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 568999999999887653 3666666443333333 4578888888888776553
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.06 E-value=1.6 Score=33.31 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 115 QDLGLLTDLINTLAKNG---LTGEVDRLIGELEEIDGG---DGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g---~~~~A~~lf~~M~~~g~p---d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
++..+...+=.+|++.+ +++++..+|++..+.+.| ....|+.=+ ||.+.|++++|.+.++...+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv-~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV-GNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH-HHHHccCHHHHHHHHHHHHhc
Confidence 56666666667788877 666888888887665434 124454444 568888888888888888764
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.72 E-value=1.6 Score=30.01 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 116 DLGLLTDLINTLAKNGL---TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~---~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
|...+..+-.++...+. .++|..+|++-.+...-++..+..+=..+.+.|++++|++.|.++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444444443332 6788888887665542245666666677788888888888888887654
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.94 E-value=2 Score=29.66 Aligned_cols=64 Identities=8% Similarity=-0.093 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEI-------DGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~-------g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
...+-.|=..+.+.|+++.|..-|++-.+. |.+....|..|-.+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344556667788899999999988775432 1334678999999999999999999999988875
No 217
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=90.88 E-value=7.4 Score=33.67 Aligned_cols=125 Identities=10% Similarity=-0.051 Sum_probs=83.8
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 87 AALRELIRQGE-CAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNG-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~-~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
..++++.+.+. -++|+++++.+.+. . | +...||.-=..+...| .++++.++++.+.+...-+..+|+---..+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~-n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM-N-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh-C-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33444444444 45789999888663 3 4 3445666556666777 59999999999988763367889988877777
Q ss_pred c-C-CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhh
Q 026993 164 A-G-SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEE--------LANEVEREFCW 218 (229)
Q Consensus 164 ~-g-~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~--------~A~~v~~e~~~ 218 (229)
. + +.++++++++++.+..- -|-..|+----.+.+.|..+ ++.+..+++-+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dp-----kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDP-----KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCT-----TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 7 7 89999999999987653 35666654333333444443 56666655544
No 218
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.76 E-value=1.6 Score=38.19 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~Ty~~L 196 (229)
.++..+.+.|+.++|......+.....-+...|-.+|.+|.+.|+..+|++.|....+ .|+. |...+=...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~----P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID----PGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC----CCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC----CCHHHHHHH
Confidence 4567788899999999988888765444788999999999999999999999988643 5986 988765433
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.54 E-value=0.94 Score=42.23 Aligned_cols=111 Identities=12% Similarity=-0.073 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+++-+.+.|.+++|+++.+.-.. -.....+.|++++|.++-.++. +...|..|=..+.+.|+
T Consensus 634 ~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A~~~~~~~~-----~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLARDLLTDES-----AEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHHHHHHTTCC-----CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHHHHHHHhhC-----cHhHHHHHHHHHHHcCC
Confidence 455556677777777754422111 1234567899999999876663 67899999999999999
Q ss_pred HHHHHHHHHHHHHcC-------CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 167 KESTVRIYGLMKRSG-------VGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g-------~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++.|.++|..+..-. .. -|.--..-+.+.....|+.+.|...+..+.+
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~----~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSF----NNKEGLVTLAKDAETTGKFNLAFNAYWIAGD 751 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHccChhhhHHHHHHc----CCHHHHHHHHHHHHHcCchHHHHHHHHHcCC
Confidence 999999999874211 00 1223344567777788888888888865543
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.00 E-value=2.2 Score=29.44 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=53.0
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 83 HDLLAALRELIRQGECAVAVHVFSTIQREY------QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 83 ~d~~~vl~~l~~~g~~~~A~~vf~~m~~~~------~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
.|...+=..+.+.|++..|...|+...+.. ..+...+|..|-.+|.+.|++++|..++++..+. .|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCC
Confidence 455667777889999999999998876542 1124567899999999999999999999988754 3543
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.68 E-value=6.1 Score=30.88 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
||.-...+.-.|++++++++|. +.|-. |..+.+. ...|--+.|.++..++.-
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~---~~~r~----~eA~~~A------~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFA---EGGSL----PLAYAVA------KANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH---HTTCH----HHHHHHH------HHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHH---HCCCh----HHHHHHH------HHcCcHHHHHHHHHHhCC
Confidence 5555666667778888877763 33432 4333332 125667778888777653
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.59 E-value=3.2 Score=36.42 Aligned_cols=73 Identities=8% Similarity=-0.131 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
.+..+|.++-..+...|++++|...++.....+ |+...|..+=..+.-.|+.++|.+.|.+-.... |...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~------P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR------PGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCcChHH
Confidence 578888888777777899999999999987764 787788777788889999999999998877653 7777875
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=87.63 E-value=4.1 Score=36.61 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.++.+.|..+|+...+.+. -+...+...|+...+.|+.+.|..+|+...+ ....|...+.-=...|..+.+..++
T Consensus 333 ~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4479999999999877654 3444567788888999999999999999843 5778999998888899999999999
Q ss_pred HHHHH
Q 026993 175 GLMKR 179 (229)
Q Consensus 175 ~~M~~ 179 (229)
+++..
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.56 E-value=5.3 Score=33.97 Aligned_cols=93 Identities=8% Similarity=-0.111 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCCC-C
Q 026993 117 LGLLTDLINTLAK-----NGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEA-GSKESTVRIYGLMKRSGVGCSWK-V 188 (229)
Q Consensus 117 ~~ty~~LI~~~~k-----~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~-g~~~~A~~~f~~M~~~g~~~~~~-P 188 (229)
-..|+.|-..|.+ .|+.++|.+.|++-.+-+ .-+..++...-..+|+. |+.++|.+.+++-...... . |
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~---~~P 275 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE---SVP 275 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG---GCS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC---CCC
Confidence 4567777777777 477788887777755443 22356666666777774 7777777777777665432 1 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 189 DEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 189 d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+....+ .++-++|+.++.+..+++
T Consensus 276 ~~~lan--------~~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 276 HNKLLV--------ILSQKRARWLKAHVQDFF 299 (301)
T ss_dssp SCHHHH--------HHHHHHHHHHHHTHHHHC
T ss_pred ChhHHH--------HHHHHHHHHHHHHhHHhc
Confidence 433222 223346666666665553
No 225
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.26 E-value=4.4 Score=29.02 Aligned_cols=85 Identities=12% Similarity=-0.068 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLI--NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI--~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.-++|.-|=+++... ++ .--.+|| +.+-..|++++|..+.+.+. .||...|-.|-. .|.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~---~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLK---GE-EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHT---TC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 344555555555431 33 2233344 46778899999999888776 589999988865 6889999999988
Q ss_pred HHHHHcCCCCCCCCCHHHHHH
Q 026993 175 GLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
.+|..+|- |-...|.+
T Consensus 93 ~~la~sg~-----p~~q~Fa~ 108 (116)
T 2p58_C 93 NRLARSQD-----PRIQTFVN 108 (116)
T ss_dssp HHHTTCCC-----HHHHHHHH
T ss_pred HHHHhCCC-----HHHHHHHH
Confidence 89988886 77777653
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.97 E-value=6.3 Score=29.98 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCCCC---CHHHHHHHHHHHHhcCCHHH
Q 026993 135 EVDRLIGELEEIDGGDGRGLSRVVRAVVEAG---SKESTVRIYGLMKRSGVGCSWKV---DEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 135 ~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g---~~~~A~~~f~~M~~~g~~~~~~P---d~~Ty~~Li~~~~~~g~~~~ 208 (229)
.+++-|.+..+.|.++..+.-.+=.++++++ +.++|+.+|++..+..- | ...-|+ |--|+.+.|+.++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-----p~~~rd~lY~-LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-----KEEQRDYVFY-LAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-----HHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----ccchHHHHHH-HHHHHHHccCHHH
Confidence 3444444433333334444444444455544 33355555555444331 2 223333 2223345555555
Q ss_pred HHHHHHHhhhcC
Q 026993 209 ANEVEREFCWVP 220 (229)
Q Consensus 209 A~~v~~e~~~~~ 220 (229)
|++.++.+-+..
T Consensus 90 A~~y~~~lL~ie 101 (152)
T 1pc2_A 90 ALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 555555444443
No 227
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.10 E-value=4.3 Score=29.05 Aligned_cols=84 Identities=13% Similarity=-0.072 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLI--NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI--~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
-++|.-|=+++... ++ .--.+|| +.+-..|++++|..+.+.+. .||...|-.|-. .|.|..+++..-+.
T Consensus 22 HqEA~tIAdwL~~~---~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 22 HEEALCIAEWLERL---GQ-DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp HHHHHHHHHHHHHT---TC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555331 33 2233343 46778899999998877766 589999988865 68999999999998
Q ss_pred HHHHcCCCCCCCCCHHHHHH
Q 026993 176 LMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+|..+|- |-...|.+
T Consensus 93 ~la~sg~-----p~~q~Fa~ 107 (115)
T 2uwj_G 93 GLGGSSD-----PALADFAA 107 (115)
T ss_dssp HHHTCSS-----HHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHH
Confidence 9998886 77777653
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.59 E-value=5 Score=34.92 Aligned_cols=61 Identities=10% Similarity=-0.056 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+...++..+...|+.++|........... + -++..|..|+.+|.+.|+..+|.++|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P----~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-P----YREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567888899999999999998887654 2 4889999999999999999999999987766
No 229
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.48 E-value=9.3 Score=27.48 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=67.6
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cC
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AG 165 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g 165 (229)
+.+.++.|++.|..-.+. -+...++.|=..|.. .++.++|.+.|..-.+.| +...+..|=..|.. .+
T Consensus 37 ~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 37 SQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred cCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCc
Confidence 345677788888776542 456677777777877 799999999999988776 67778888888888 89
Q ss_pred CHHHHHHHHHHHHHcCC
Q 026993 166 SKESTVRIYGLMKRSGV 182 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~ 182 (229)
+.++|.+.|++-.+.|.
T Consensus 112 d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 112 NEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999988886
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.43 E-value=12 Score=27.56 Aligned_cols=66 Identities=8% Similarity=-0.041 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 115 QDLGLLTDLINTLAKNGLTGE---VDRLIGELEEIDGG-DG-RGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~---A~~lf~~M~~~g~p-d~-~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
++..+--.+-.++.+....++ +..+++++...+.| +. ...=.|=-|+.|.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 555555556667777776666 77777777665434 11 22223444677888888888888777764
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=81.40 E-value=6.2 Score=33.52 Aligned_cols=100 Identities=8% Similarity=-0.094 Sum_probs=74.0
Q ss_pred CHHHHHHHHH-HHHhc--C------CHHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 026993 116 DLGLLTDLIN-TLAKN--G------LTGEVDRLIGELEEIDGGD---GRGLSRVVRAVVEA-----GSKESTVRIYGLMK 178 (229)
Q Consensus 116 d~~ty~~LI~-~~~k~--g------~~~~A~~lf~~M~~~g~pd---~~tyn~lI~~~~~~-----g~~~~A~~~f~~M~ 178 (229)
+...|..++. .+... | .+.+|..++++..+- .|+ ...|++|-.-|.+. |+.++|.+.|++-.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 3456776665 33332 2 245566666665443 354 57999999999994 99999999999998
Q ss_pred HcCCCCCCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCC
Q 026993 179 RSGVGCSWKV--DEYVGKVLSKGLRRF-GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 179 ~~g~~~~~~P--d~~Ty~~Li~~~~~~-g~~~~A~~v~~e~~~~~~~ 222 (229)
+.. | +.-++...-..++.. |+.++|.+.+++....++.
T Consensus 232 ~Ln------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 232 RYC------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHC------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhC------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 764 5 367777788999995 9999999999998887554
No 232
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.05 E-value=7.3 Score=28.55 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
+..+|++|...|+.++|.+-++++..... ...+++..+..++=+.+. -+.+..++..+...| ..|=+.+..|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~---~is~~q~~~Gf~ 85 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS---TITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT---CSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC---CcCHHHHHHHHH
Confidence 34678888888888888888877743211 234666777777777642 355677777776654 334445555543
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.12 E-value=22 Score=27.07 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=56.8
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 129 KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
+||.+.....-+-.+-. +.--++.-++.+...|+-|.--+++.++....- |+....-.+-++|.+.|+..+
T Consensus 73 ~C~NlKrVi~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~-----~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILKNNE-----VSASILVAIANALRRVGDERD 143 (172)
T ss_dssp GCSCTHHHHHHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC-----SCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhcHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC-----CChHHHHHHHHHHHHhcchhh
Confidence 34555544444444432 334566677788888888888888888644332 677777778999999999999
Q ss_pred HHHHHHHhhhc
Q 026993 209 ANEVEREFCWV 219 (229)
Q Consensus 209 A~~v~~e~~~~ 219 (229)
|.+++++..+-
T Consensus 144 a~eLl~~AC~k 154 (172)
T 1wy6_A 144 ATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.20 E-value=17 Score=25.91 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 133 TGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 133 ~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
.-++.+-++.+-... .|+.....+.++||-|..++..|+++|+-.+.+ |. +...+|..+++-+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~----~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AG----PHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TT----TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hc----CchhhHHHHHHHH
Confidence 346666777777667 888888899999999999999999988777643 32 4455677776543
No 235
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.62 E-value=7.3 Score=29.53 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
+..+|++|...|+.++|.+-++++..... ...+++..+..++=+.+. -+.+..|+..+...| .+|=+.+..|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~---~is~~q~~~Gf~ 87 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS---TITIDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT---CSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC---CcCHHHHHHHHH
Confidence 45689999999999999988888743211 245677777778777532 445677777777653 344445555543
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH-HHHHHHhcC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV-LSKGLRRFG 204 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~-Li~~~~~~g 204 (229)
+ -++...++.- .+ |+...|-. ++.-+...|
T Consensus 88 ~------vl~~ldDl~l-Di-----P~A~~~la~~v~~ai~~g 118 (152)
T 2ion_A 88 R------IYNEIPDINL-DV-----PHSYSVLERFVEECFQAG 118 (152)
T ss_dssp H------HHHHHHHHHH-HS-----TTHHHHHHHHHHHHHHTT
T ss_pred H------HHHhChHhcc-Cc-----cchHHHHHHHHHHHHHCC
Confidence 3 2333333322 23 88888743 444444444
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.78 E-value=21 Score=24.02 Aligned_cols=68 Identities=4% Similarity=-0.182 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 150 DGRGLSRVVRAVVEAGS---KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~---~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|...|..+-.++...+. .++|..+|++-.+..- -+......+-..+.+.|++++|...++.+-+..+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45556666666655544 7999999999987652 25566667778889999999999999999887655
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.12 E-value=34 Score=26.05 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
+..-.+.-++.+...|+-|+-.++..++..+..|+....-.+=.||-+-|...+|-++..+-=++|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344555667777777777777777775332255665566666777777777777777777777776
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=66.71 E-value=35 Score=24.94 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCCCCCC-C--HHHHHHHHHHHHhcCCHH
Q 026993 134 GEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES---TVRIYGLMKRSGVGCSWKV-D--EYVGKVLSKGLRRFGEEE 207 (229)
Q Consensus 134 ~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~---A~~~f~~M~~~g~~~~~~P-d--~~Ty~~Li~~~~~~g~~~ 207 (229)
..+++-+.+-...|.++..+--.+-.+++++...++ ++.++.+..+.+- | + ...|. |-=|+.+.|+++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-----p~~~Rd~lY~-LAvg~yklg~Y~ 91 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-----KEEQRDYVFY-LAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-----HHHHHHHHHH-HHHHHHHTTCHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----cchHHHHHHH-HHHHHHHhhhHH
Confidence 344444444433343444444445556666665554 6666666655542 3 2 22232 334556677777
Q ss_pred HHHHHHHHhhhcCCC
Q 026993 208 LANEVEREFCWVPGG 222 (229)
Q Consensus 208 ~A~~v~~e~~~~~~~ 222 (229)
+|++.++.+-+..|.
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 777766666655443
No 239
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.85 E-value=50 Score=26.65 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH---cCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE---YQQQ---DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV 157 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~---~~~p---d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l 157 (229)
|...-|+.+..+.++++|..+.+..++. ...+ +...-...|..-.....-.-|..|.+++.. ..+...--..
T Consensus 20 ~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~ 97 (235)
T 2d2s_A 20 EGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 3445677788888999999998888765 2201 112222333333343444445555555533 2345556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 026993 158 VRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~ 179 (229)
+..+.+-|+.++|.++|=+...
T Consensus 98 v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHHH
Confidence 7777888888888888766553
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=62.43 E-value=50 Score=25.25 Aligned_cols=109 Identities=8% Similarity=-0.029 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCH------HHHHHHHHHHHHHcCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHhhhCC-CCC
Q 026993 85 LLAALRELIRQGEC------AVAVHVFSTIQREYQQQDL----GLLTDLIN---TLAKNGLTGEVDRLIGELEEID-GGD 150 (229)
Q Consensus 85 ~~~vl~~l~~~g~~------~~A~~vf~~m~~~~~~pd~----~ty~~LI~---~~~k~g~~~~A~~lf~~M~~~g-~pd 150 (229)
+...+.-+.+.|+. +..+++|+....... |+. ..|--|-= .|-..+++++|.++|+.+.+.+ +-
T Consensus 16 W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF- 93 (161)
T 4h7y_A 16 WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF- 93 (161)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-
T ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-
Confidence 44555556666776 666777776655443 321 01111110 1123378999999999987655 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
...|-.-=.-=.+.|+++.|.++++.-+..|.. +.....+.|..+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-----~~~~le~a~~nl 138 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-----PLEMLEIALRNL 138 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-----cHHHHHHHHHhh
Confidence 666766666667899999999999999987763 445555555554
No 241
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.26 E-value=45 Score=26.47 Aligned_cols=54 Identities=6% Similarity=-0.150 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 130 NGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
++...++..+|..|..+| .--..-|-.-=.-+-..|++.+|.++|..=++.+-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 445678888888887777 334556666666677788888888888777776654
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=61.88 E-value=21 Score=25.51 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI 124 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI 124 (229)
+.|+++.|-+++..|..+|+.++.++. ..-.+|..++
T Consensus 50 aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~l 86 (109)
T 1v54_E 50 AALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 567777777777777777777766655 4444566655
No 243
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.93 E-value=29 Score=25.18 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG--SKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g--~~~~A~~~f~~M~~~g~~ 183 (229)
.+.+|.-|...|+.+||.+.+.++........+++..+..++=+.+ ..+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 5678899999999999999999996422224566777777777664 246788888888888863
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=58.01 E-value=63 Score=24.99 Aligned_cols=104 Identities=8% Similarity=-0.015 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
--...|+++.|+++-+.+ -+...|..|=....+.|+++-|++.|..... |..+.--|.-.|+.++-
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHH
Confidence 344678888888776555 4556788888888888888888888888763 44555555666776655
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
..+-+.-...|- +++-...+.-.|+++++.+++.+..+
T Consensus 80 ~kla~iA~~~g~----------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 80 SKMQNIAQTRED----------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCcc----------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 443333334442 23334445556677777777665554
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.63 E-value=32 Score=30.16 Aligned_cols=94 Identities=7% Similarity=-0.085 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCCCCCHH-
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGSKESTVRIYGLMKR---SGVGCSWKVDEY- 191 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~~~~A~~~f~~M~~---~g~~~~~~Pd~~- 191 (229)
++..+-..|.+.|++++|.+.|.++...- .+. ...|-.+|..+...+++..|....++... .+.. |+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d----~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD----WERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC----THHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC----HHHHH
Confidence 46667778888888888888888887643 222 35677778888888888888888776643 2322 4332
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 192 ---VGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 192 ---Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.|..++ +...+++..|.+.|.|.-.
T Consensus 209 ~lk~~~gl~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHG--GGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHhChHHHHHHHHHHHhc
Confidence 233332 3456778888877776543
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=55.31 E-value=64 Score=24.25 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 134 GEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 134 ~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
-|..+-++.+...+ .|+.....+-+++|-+..++..|+++|+-.+.+ |. +...+|..+++-+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~----~~~~iY~y~lqEl 132 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AG----PHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TT----TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cC----CchhhHHHHHHHH
Confidence 35666677777777 899999999999999999999999999877654 33 5566787776543
No 247
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.22 E-value=14 Score=27.94 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG--SKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g--~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
..+.+|.-|...|+++||.+.+.++........+++..+..++=+.+ ..+.+..++..+...|+- |-.-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i--------s~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI--------TIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS--------CHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc--------CHHHH
Confidence 35788999999999999999999986422334566777777777643 256788888888887763 44445
Q ss_pred HHHHHh
Q 026993 197 SKGLRR 202 (229)
Q Consensus 197 i~~~~~ 202 (229)
.+||.+
T Consensus 83 ~~Gf~~ 88 (152)
T 2ion_A 83 KRGYER 88 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 556554
No 248
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.19 E-value=40 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
+.+.|.++++.....|- ..|.++++++...|....|..
T Consensus 52 ~~~~ar~Lld~L~~rG~--------~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS--------QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp HHHHHHHHHHHHTTSCT--------THHHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCh--------HHHHHHHHHHHHcCcHHHHHH
Confidence 44555555555544442 144445555544454444443
No 249
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.44 E-value=25 Score=26.64 Aligned_cols=49 Identities=4% Similarity=-0.070 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 134 GEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 134 ~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
+++..+|..|..+| .--..-|-.-=.-+-..|++.+|.++|..=++.+-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34666666666666 33345666666666666677777666666655554
No 250
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.10 E-value=98 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
.+...-...+..+.|-|+-++|.++|-+...
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4556667778888999999999999887754
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.79 E-value=1e+02 Score=30.62 Aligned_cols=121 Identities=9% Similarity=-0.083 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CC-CCC-----------
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE----ID-GGD----------- 150 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g-~pd----------- 150 (229)
.++..+.+.++.+.|.++..+. . .|...--.+=-+|..+|++++|.+.|.+--. .+ ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~----~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL----N-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc----c-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455666777777766544333 2 3433321222356778899999998865321 00 010
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 026993 151 -------GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY--VGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 151 -------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~--Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
..=|.-++.-|-+.|.++.|.++-..-.+..-.. .++.. .|+.+.++....|++|+|...+.
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~--~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD--DEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC--CHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 1225667777888888888887655444332110 02222 47788888999999988876664
No 252
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=46.82 E-value=61 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 130 NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
....+.|.++++.+..+| ...|..++.++.+.|..
T Consensus 49 ~t~~~kar~Lld~l~~kG---~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD---NDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcC---HHHHHHHHHHHHHcCHH
Confidence 455555666666665543 34566666666555543
No 253
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.81 E-value=38 Score=25.97 Aligned_cols=54 Identities=7% Similarity=-0.161 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 134 GEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 134 ~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
+++..+|..|..+| .--..-|-.-=.-+-..|++.+|.+||..=++.+-. |-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~----P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE----PLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB----SHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHH
Confidence 45788899998888 445677888888888999999999999888877764 7543
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=46.79 E-value=45 Score=25.06 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI 124 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI 124 (229)
+.|+++.|-+++..|..+|+.++.++. +.-.+|.-+|
T Consensus 93 AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~l 129 (152)
T 2y69_E 93 AALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHH
Confidence 456666666666666666666665554 4444555554
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=46.60 E-value=2e+02 Score=27.40 Aligned_cols=122 Identities=10% Similarity=0.001 Sum_probs=74.1
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhh-------CC-CCCHH---HHH
Q 026993 89 LRELIRQGE-CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL-TGEVDRLIGELEE-------ID-GGDGR---GLS 155 (229)
Q Consensus 89 l~~l~~~g~-~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~-------~g-~pd~~---tyn 155 (229)
++-+...++ .+.|+.+|+.+.+.....++....++|..+-+.+. --+|.++..+..+ .- ..+.. ..+
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 333434555 57899999998765220233334455555444432 2234444444321 11 11211 111
Q ss_pred ---HH----HHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 156 ---RV----VRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 156 ---~l----I~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
.| ..-+...|+++-|+++=++-...- | +-.||-.|...|.+.|++|.|.-.++-+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELA------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12 344557899999999988877643 5 4679999999999999999998887755
No 256
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.70 E-value=38 Score=27.38 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 134 GEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 134 ~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
+++..+|..|..+| .--..-|-.-=.-+-..|++.+|.+||..=++.+-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 46677777777776 334566777777777777777777777766666553
No 257
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.62 E-value=48 Score=28.64 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG--SKESTVRIYGLMKRSGV 182 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g--~~~~A~~~f~~M~~~g~ 182 (229)
-+.+|.=|...|+++||.+.+.++..-.....+++..++.++=+.+ ..+....++..+...|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 4677777888888888888888876422112445566666665543 23556677777776665
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=45.31 E-value=54 Score=31.34 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~ 144 (229)
|...|+++.|+++=+.-.. +. | +-.+|..|...|.+.|+++.|.-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~-~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE-LA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh-cC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4467899999977655443 44 5 46789999999999999999999999986
No 259
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.06 E-value=42 Score=28.32 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 026993 122 DLINTLAKNGLTGEVDRLIGEL 143 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M 143 (229)
.+|.-|...|+++||.+.+.++
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3444444445555555555444
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.40 E-value=1.7e+02 Score=25.51 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=69.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CC-CCC--HHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE-YQQQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEE----ID-GGD--GRGLS 155 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~-~~~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g-~pd--~~tyn 155 (229)
.+-+...|++.+|..+...+..+ ++ .+ +..|...+..|...+++..|..+...... .. .|+ ..-|.
T Consensus 144 a~i~e~~g~~~eA~~iL~~l~~Et~~-~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 144 VEIKKEEGKIDEAADILCELQVETYG-SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 44566789999999999999877 55 32 45677888899999999999999988642 22 233 25678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
.++.-+...+++.+|.+.|.+..+
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888888899999999988887754
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.90 E-value=1.8e+02 Score=25.46 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCCCCH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEI--DGGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKR----SGVGCSWKVDE 190 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~--g~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd~ 190 (229)
..|...|-..|++.+|.+++.++... |.-| +-.|.-.+.-|...+++.+|..++.+... ..+. |+.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~----~~l 216 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY----ESL 216 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC----HHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc----HHH
Confidence 45667888999999999999998643 2112 25788899999999999999999988743 3332 443
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 191 --YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 191 --~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.-|..++.-+...+++.+|.+.|.|.-+
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4567888888889999999988887644
No 262
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.49 E-value=12 Score=23.72 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhCC-CCCHHHHHHHHHHH-HHcCC
Q 026993 134 GEVDRLIGELEEID-GGDGRGLSRVVRAV-VEAGS 166 (229)
Q Consensus 134 ~~A~~lf~~M~~~g-~pd~~tyn~lI~~~-~~~g~ 166 (229)
++|...|-+|.+.. .+..-||.-.|... ++..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 56777777766554 55556777777776 55443
No 263
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.01 E-value=46 Score=22.82 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 131 GLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 131 g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.+.+.|.+|++.++.+| ...|..++.++...|+.+-|-
T Consensus 51 t~~~~ar~Lld~L~~rG---~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG---SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC---TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC---hHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888775 347888888887767666553
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=40.10 E-value=34 Score=24.44 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS 155 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn 155 (229)
+..+.++|++.+|+.+.+.+ +. ||+..|-+|- =.|.|.-+++..=+.+|...|.|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~---c~-pdlepw~ALc--e~rlGl~s~le~rL~~la~sg~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKL---AY-PDLEPWLALC--EYRLGLGSALESRLNRLARSQDPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTS---CC-GGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC---CC-chHHHHHHHH--HHhcccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44677899999999765444 55 9999998884 45889999998888899887766655554
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.07 E-value=1.5e+02 Score=29.28 Aligned_cols=113 Identities=11% Similarity=-0.011 Sum_probs=77.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hhhC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ----------------------QQDLGLLTDLINTLAKNGLTGEVDRLIGE-LEEI 146 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~----------------------~pd~~ty~~LI~~~~k~g~~~~A~~lf~~-M~~~ 146 (229)
..+...|++++|.+.|........ ..-..-|..++.-+-+.|.++.|.++-.. +...
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 929 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345678999999999955321100 01123478888889999999988876653 3333
Q ss_pred C--CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 147 D--GGDG--RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 147 g--~pd~--~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
+ .++. ..|+.+.+++...|++++|....-.|...... .-...-||..+|..|.++.
T Consensus 930 ~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r------~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 930 ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK------KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC------HHHHHHHHHHHHHHCCHHH
T ss_pred cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH------HHHHHHHHHHHHhCCChhh
Confidence 2 2222 36999999999999999999999888765543 2345668888888876654
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.59 E-value=1.5e+02 Score=23.40 Aligned_cols=52 Identities=10% Similarity=-0.014 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC
Q 026993 98 CAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG 149 (229)
Q Consensus 98 ~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p 149 (229)
...+.++|..|... ++.--...|-..=..|-..|++.+|.++|..=.+++ +|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44666777777555 441233456666666666777777777777655555 55
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=37.10 E-value=1.1e+02 Score=25.40 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~~~~~~g 165 (229)
+..+.+.|.+++|+.-...-.+.-. -|.-.=..|+.-||=+|+.+.|.+=++-..+-. .|-..+|-.+|.+=-..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH-
Confidence 3456788999998876655444332 466677789999999999999988777665432 23344565555531111
Q ss_pred CHHHHHHHHHHHHHcC-----CCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhc
Q 026993 166 SKESTVRIYGLMKRSG-----VGCSWKVDEYVGKVLSKGLRR--FGEEELANEVEREFCWV 219 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g-----~~~~~~Pd~~Ty~~Li~~~~~--~g~~~~A~~v~~e~~~~ 219 (229)
.+...-+ +. +|.. -...|+.++.. .|+.+.|.++-.+..+.
T Consensus 82 ---------~~vfaG~~~P~~~g---~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 ---------KDFAQGAATAKVLG---ENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---------HHHTTSCCCEECCC---SCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCCCCCCCCC---CCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111111 11 1333 45667777754 59999998888776554
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=34.05 E-value=33 Score=24.48 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS 155 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn 155 (229)
+..+.++|++.+|+.+.+.+ +. ||+..|-+|- =.|.|.-+++..=+.+|...|.|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~---c~-pdlepw~ALc--e~rlGl~s~le~rL~~la~sg~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGN---PW-PALEPWFALC--EWHLGLGAALDRRLAGLGGSSDPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTC---CC-GGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCC---CC-chHHHHHHHH--HHhcccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34577899999998655433 55 9999998884 45899999999888899888766655554
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.86 E-value=90 Score=23.48 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
+++.++|..|...|+. .--..-|-.--.-+...|++.+|.+|++
T Consensus 82 ~dp~~if~~L~~~~IG---~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG---TLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp SCHHHHHHHHHTTTTT---TTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467777777777665 3556666677777777777777777775
No 270
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.00 E-value=90 Score=20.06 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
++-|++.+++..-+++|...+++..++|.-+..+|---++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34444455555555555555555554443344444444444443
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.78 E-value=64 Score=24.44 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC---HHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLG--LLTDLINTLAKNGLTGEVDRLIGELEEID-GGD---GRGLSRVVR 159 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~--ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd---~~tyn~lI~ 159 (229)
+.|..-++.|+.+....+.+.+.+. .. +|.. ...+.++.-++.|..+-+..++ +.| .++ ..-++. +.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-l~ 84 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLV----TAGASPMALDRHGQTA-AH 84 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCH-HH
Confidence 4556667889988877777766543 22 2211 1234566677788876555444 455 443 333444 44
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
..+..|+.+-+..+++.....++. .-..|..-.+.|. ..+..|+.+..+.+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~ 138 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALH-VAVNTECQETVQLLLER 138 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCC-TTCCCTTSCCHHH-HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcCCCcccc-ccccCcCCCcHHH-HHHHcCCHHHHHHHHHc
Confidence 456677765444433322211112 0013444445554 44567887776666653
No 272
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.08 E-value=39 Score=28.67 Aligned_cols=102 Identities=11% Similarity=0.050 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL-TGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
...++++|...|+.++|..-++++..... ...+++..+..++=+... -+.+..++..+.+. +..+-+.+..||-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~---~~is~~~~~~Gf~~ 89 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCA---GHLSTAQYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT---TSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHH
Confidence 45789999999999999988777743211 234556666666655432 23456677777654 34455566666533
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
+++.|....+.+ |+..+|-.-+-+.+-
T Consensus 90 ---------~~~~l~Dl~lDi---P~a~~~La~~v~~~i 116 (339)
T 1ug3_A 90 ---------ILELAEDMEIDI---PHVWLYLAELVTPIL 116 (339)
T ss_dssp ---------HHHHHHHHTTTC---TTHHHHHHHHHGGGG
T ss_pred ---------HHhhChHhhcCc---cchHHHHHHHHHHHH
Confidence 445555544442 999998665554443
No 273
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.30 E-value=4.6e+02 Score=26.85 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCC---------------HHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 120 LTDLINTLAKNGL---------------TGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 120 y~~LI~~~~k~g~---------------~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
=+.||++|+|.|. .++-.+.|.++.+-- .-|....-..+.--.+.|++..|+++..++.+.
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--- 1313 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--- 1313 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4679999998553 344455666665432 224433333344444789999999999999875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 184 CSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 184 ~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
+|....|.-++..+...|=-..+.-.-+.+--.+|+++.
T Consensus 1314 ---k~~~~~~~~~~~~~~~l~w~h~~~~~~~~~~~~~p~~~~ 1352 (1354)
T 3lxu_X 1314 ---KRTRDHFVELAAINGALGHEHIRTVINRMMITAFPSSFR 1352 (1354)
T ss_dssp ---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCC
T ss_pred ---cccHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhCcccCC
Confidence 388889999998888877665565555555555666553
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.03 E-value=1.2e+02 Score=23.11 Aligned_cols=52 Identities=6% Similarity=-0.021 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCH
Q 026993 100 VAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDG 151 (229)
Q Consensus 100 ~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~ 151 (229)
.+..+|..|... ++.--...|-.-=..|-..|++.+|.++|..=.+++ .|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 466788888765 441234456666667777888888888888766666 6644
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.94 E-value=2.9e+02 Score=23.79 Aligned_cols=91 Identities=3% Similarity=-0.089 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC-CCCH----HHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEE---ID-GGDG----RGLSR 156 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~---~g-~pd~----~tyn~ 156 (229)
.+-+-+.+.|+.+.|.+.|.+++.. .. ..-+-.|-.+|..+...++...|.....+... .+ .|+. ..|..
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 3455677889999999999999887 33 13356788899999999999999998887643 33 3433 34555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
++. ...+++.+|...|-+...
T Consensus 216 l~~--l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IHC--LAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HGG--GGTSCHHHHHHHHHHHHH
T ss_pred HHH--HHhChHHHHHHHHHHHhc
Confidence 543 467899999999988764
No 276
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=26.47 E-value=1.8e+02 Score=20.89 Aligned_cols=85 Identities=7% Similarity=0.049 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh-cCC---
Q 026993 132 LTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR-FGE--- 205 (229)
Q Consensus 132 ~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~-~g~--- 205 (229)
.-+++..+|..+-..| .-+..-|-.++.........++...+|..+-..|-. .-+.--+..++..+.. .|.
T Consensus 54 ~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G---~i~~~e~~~~~~~~~~~~g~~~~ 130 (183)
T 1s6c_A 54 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDG---YINKEEMMDIVKAIYDMMGKYTY 130 (183)
T ss_dssp CHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSS---CEEHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCC---eEcHHHHHHHHHHHHHHhccccC
Confidence 4566777888876554 334444444444444444455666777766443321 1333333333333311 142
Q ss_pred --------HHHHHHHHHHhhhc
Q 026993 206 --------EELANEVEREFCWV 219 (229)
Q Consensus 206 --------~~~A~~v~~e~~~~ 219 (229)
.+++.++++++..-
T Consensus 131 ~~~~~~~~~~~~~~~f~~~D~d 152 (183)
T 1s6c_A 131 PVLKEDTPRQHVDVFFQKMDKN 152 (183)
T ss_dssp -------CHHHHHHHHHHHCTT
T ss_pred cCccHHHHHHHHHHHHHHhCCC
Confidence 26677777776543
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=26.39 E-value=2.1e+02 Score=23.74 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 124 INTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
+..+.+.|.+++|..-..+-.+...-|...=..|+.-+|=.|+++.|..-++-..+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345667888888888776655544336777888888888888888888777666543
No 278
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.27 E-value=1.1e+02 Score=19.61 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
..++-|+..+....-.++|+...++..+.|. -+.-+|---++.+++.--+
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-----I~l~~ylK~vR~LaReQF~ 52 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-----IPLDTFVKQGRELARQQFL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999997 6888887778888775443
No 279
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.02 E-value=1.2e+02 Score=21.82 Aligned_cols=41 Identities=5% Similarity=-0.171 Sum_probs=19.8
Q ss_pred HHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 139 LIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 139 lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
||+.+.... .|++..-=.-|......++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444333 34443333334444555566666666655544
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=26.02 E-value=3.2e+02 Score=23.63 Aligned_cols=95 Identities=13% Similarity=-0.078 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCCCCCHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID-GGD-----GRGLSRVVRAVVEAGSKESTVRIYGLMKR--SGVGCSWKVDEY 191 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd-----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~--~g~~~~~~Pd~~ 191 (229)
=.-|..-|...|++.+|.+++.++.+.= ..| +-.|-.-|..|...|++.++...+..-.. ..+.| .|...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~--~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC--PPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC--CHHHH
Confidence 3468899999999999999998887532 222 24677888889999999999999876543 22210 14333
Q ss_pred HHHHHHHHH--H-hcCCHHHHHHHHHHh
Q 026993 192 VGKVLSKGL--R-RFGEEELANEVEREF 216 (229)
Q Consensus 192 Ty~~Li~~~--~-~~g~~~~A~~v~~e~ 216 (229)
..--+..|. . ..+++..|...|-|.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 222222222 3 678999998888765
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.97 E-value=3.2e+02 Score=23.62 Aligned_cols=90 Identities=6% Similarity=-0.077 Sum_probs=62.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--C-CCHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--G-GDGRGLSRVVR 159 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~-pd~~tyn~lI~ 159 (229)
+.+-+...|++.+|++++..+.++++..| +-+|-.-|.+|...|++.++...+..-.... . |+...- ..|+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHHH
Confidence 45667889999999999999988844123 3457778889999999999999887654322 2 333221 2222
Q ss_pred HH-----H-HcCCHHHHHHHHHHHH
Q 026993 160 AV-----V-EAGSKESTVRIYGLMK 178 (229)
Q Consensus 160 ~~-----~-~~g~~~~A~~~f~~M~ 178 (229)
.| . ..+++.+|...|-+-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 2 5678899988886653
No 282
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.42 E-value=62 Score=24.47 Aligned_cols=113 Identities=17% Similarity=0.083 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC---CHHHHHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG---DGRGLSRVVRAVVE 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p---d~~tyn~lI~~~~~ 163 (229)
|...++.|+.+....++..-... .. .|..- .+.++.-++.|+.+-+..+++ .| .+ |...++.|.. .++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g-~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~-A~~ 82 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATR-TDQDS-RTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHI-AAS 82 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTS-CCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHH-HHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhc-CCCCC-CCHHHHHHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHHH-HHH
Confidence 45567788888776666443221 11 23322 345556677888776665554 35 33 3344555544 455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.|+.+ +++.+.+.|.. .-.+|..-.+.|. ..+..|+.+..+.+++
T Consensus 83 ~~~~~----~v~~Ll~~g~~-~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAH-VNAVNQNGCTPLH-YAASKNRHEIAVMLLE 127 (231)
T ss_dssp HTCHH----HHHHHHHTTCC-TTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred cCHHH----HHHHHHHcCCC-CCCCCCCCCCHHH-HHHHcCCHHHHHHHHH
Confidence 66654 45556667764 0012333344444 4456788887766664
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.09 E-value=1.4e+02 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
+++.++|..|...|+. .--..-|-..-.-|...|++.+|.+||+
T Consensus 131 ~~p~~if~~L~~~~IG---~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG---QESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp SCHHHHHHHHHHTTCS---TTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcc---hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5777888888888876 3567777888888888888888888886
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.00 E-value=2.4e+02 Score=21.35 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=37.2
Q ss_pred HHhcCCHHHHHHHHHHhhhCC-CC--CHHHHHHHHH----H--HHHcCCHHHHHHHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEID-GG--DGRGLSRVVR----A--VVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g-~p--d~~tyn~lI~----~--~~~~g~~~~A~~~f~~M~~ 179 (229)
+...|++-+|.++|++.=... .+ +...|-.||. | ..+.|+..-|..++.+-..
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334588888888888874443 45 4566777777 2 2357899999999988754
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.52 E-value=1.6e+02 Score=24.81 Aligned_cols=72 Identities=10% Similarity=-0.053 Sum_probs=42.9
Q ss_pred HHHHHhhhCC--CCCHHHHHHHHHHHHH-cCCHH--H-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 138 RLIGELEEID--GGDGRGLSRVVRAVVE-AGSKE--S-TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 138 ~lf~~M~~~g--~pd~~tyn~lI~~~~~-~g~~~--~-A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
++++.|..-. .|+...|=.-+-+-+- .|-+. + .-.+.+.+...|. -......+++.+++....+...+
T Consensus 89 ~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~------~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 89 EILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK------AASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC------HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch------HHHHHHHHHHHHHHHcCHHHHHH
Confidence 3445555444 7887766665555444 44433 2 1234444555564 33555667888888888888888
Q ss_pred HHHH
Q 026993 212 VERE 215 (229)
Q Consensus 212 v~~e 215 (229)
++++
T Consensus 163 ~~~~ 166 (339)
T 1ug3_A 163 LWRE 166 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 286
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.29 E-value=1.5e+02 Score=25.41 Aligned_cols=126 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCC-CCCHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGE-VDRLIGELEEID-GGDGRGLSRVV 158 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~-A~~lf~~M~~~g-~pd~~tyn~lI 158 (229)
+..++.+|...|++++|.+-++++.. |+ .+.+..+..++=+...-.+ +-.++..+...| .+.......+.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~ 90 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFL 90 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHHcCCHH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 159 RAVVEAGSKE----STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 159 ~~~~~~g~~~----~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.-+-...++. .|..++.++...-+. -+..+.+-+-+-+..-+.......+++-+.+
T Consensus 91 ~lle~l~Dl~iDiP~a~~~la~f~ar~i~----~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 91 NVLDQCPKLEVDIPLVKSYLAQFAARAII----SELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HHHHTHHHHHHHCTTHHHHHHHHHHHHHH----TTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred HHHhhChHhccccccHHHHHHHHHHHHHH----cCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.24 E-value=1.2e+02 Score=26.09 Aligned_cols=62 Identities=10% Similarity=0.113 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE--EELANEVEREFCW 218 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~--~~~A~~v~~e~~~ 218 (229)
...+.+|.=|...|+.++|.++++++..-.+. ..+++.++..++-+.+. .+...+++..+.+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-----he~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-----HELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-----HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch-----HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999643332 46778888888887543 3445666665543
No 288
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.87 E-value=1.2e+02 Score=21.82 Aligned_cols=45 Identities=16% Similarity=-0.017 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHH-HcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 167 KESTVRIYGLMK-RSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 167 ~~~A~~~f~~M~-~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+.+.+++..-. +.|-. .|+..|+.+|.+.|+-+.|++|-..+++
T Consensus 46 ~eq~~~mL~~W~~r~G~~-------ATv~~L~~AL~~i~~~diAe~Ie~~l~~ 91 (122)
T 3ezq_B 46 TERVRESLRIWKNTEKEN-------ATVAHLVGALRSCQMNLVADLVQEVQQA 91 (122)
T ss_dssp HHHHHHHHHHHHHHCTTT-------CCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCC-------chHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355666665544 33422 3788888888888888888887766554
No 289
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=20.42 E-value=2.4e+02 Score=20.16 Aligned_cols=122 Identities=5% Similarity=0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026993 85 LLAALRELIRQ-GECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAV 161 (229)
Q Consensus 85 ~~~vl~~l~~~-g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~ 161 (229)
+..++..+... ........+|..+-.. .. -+..-+..++..+.....-++...+|..+-..| -..+++.-+...+
T Consensus 41 ~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~-i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~-~G~i~~~e~~~~~ 118 (183)
T 1s6c_A 41 FKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS-VKFEDFVTALSILLRGTVHEKLRWTFNLYDINK-DGYINKEEMMDIV 118 (183)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSC-EEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTC-SSCEEHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHhCCCCCCc-EeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCC-CCeEcHHHHHHHH
Confidence 33444444322 2344455566555322 11 222233334444444445567788888876544 1123444444444
Q ss_pred HHc----CC-----------HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 162 VEA----GS-----------KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 162 ~~~----g~-----------~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
... |. -+.+.++|..+-..|- ..++|.-++..+.+...+-.....+.
T Consensus 119 ~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~d------G~i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 119 KAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD------GIVTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp HHHHHHTC-----------CHHHHHHHHHHHCTTCS------SEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCC------CcEeHHHHHHHHhcChHHHHHHHHhh
Confidence 332 42 2667777777754432 33677777777766655545544443
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.31 E-value=1.5e+02 Score=24.88 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
+..+|++|...|+.++|.+-++++..-.. ...+++..+..++=+.+. -+....|+..+.+.| .+|=+.+..|+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~---~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS---TITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC---SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC---CCCHHHHHHHHH
Confidence 44789999999999999999888853211 234677788888877643 455678888887654 334445555553
Done!