BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026994
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1
Length = 351
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
G+LLEP+WG+ E L F +VN L + Y + YL+ + + G G L G
Sbjct: 86 GRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGV 145
Query: 61 LVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYL 119
LV +KQ + D L + +++ +P L+L L + + T + L + FG W+YL
Sbjct: 146 LVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYL 205
Query: 120 RYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCG----RRTETSGDDH 175
R+ Q+ ++ GD +D FAF++FFPE ++PV+ +A++ H +L ++T D
Sbjct: 206 RFYQR--HSRGRGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVG 263
Query: 176 GYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAEN 228
+ SLPG+DP +A RRR+ +AL ERL K QS+ S D E
Sbjct: 264 APSSITISLPGTDPQDAERRRQLALKALNERL---KRVEDQSIWPSMDDDEEE 313
>sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1
Length = 350
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
Query: 2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
G+LLEP+WG+ E L F +VN L + + Y + YL+ + + G G L G
Sbjct: 86 GRLLEPLWGALELLIFFSVVNVSVGLLGALAYLLTYMASFNLVYLFTIRIHGALGFLGGV 145
Query: 61 LVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYL 119
LV +KQ + D L + +++ +P L+L L + + T + L + FG W+YL
Sbjct: 146 LVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYL 205
Query: 120 RYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLC----GRRTETSGDDH 175
R+ Q+ + GD +D FAF++FFPE ++PV+ +A++ H +L ++T D
Sbjct: 206 RFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVG 263
Query: 176 GYTLGGASLPGSDPIEASRRRERGARALEERLA-TEKLAAAQSVEESKKDA 225
+ SLPG+DP +A RRR+ +AL ERL E +A S+++ +++A
Sbjct: 264 APSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSAWPSMDDDEEEA 314
>sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1
Length = 351
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 11/233 (4%)
Query: 2 GKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGF 60
G+LLEP+WG+ E L F +VN L + Y + YL+ + + G G L G
Sbjct: 86 GRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGV 145
Query: 61 LVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYL 119
LV +KQ + D L + +++ +P L+L L + + T + L + FG W+YL
Sbjct: 146 LVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLISSWVYL 205
Query: 120 RYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLC----GRRTETSGDDH 175
R+ Q+ + GD +D FAF++FFPE ++PV+ +A++ H +L ++T D
Sbjct: 206 RFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVG 263
Query: 176 GYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAEN 228
+ SLPG+DP +A RRR+ +AL ERL K QSV S D E
Sbjct: 264 APSSITISLPGTDPQDAERRRQLALKALNERL---KRVEDQSVWPSMDDDEEE 313
>sp|Q12239|YO107_YEAST Uncharacterized membrane protein YOL107W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1
SV=1
Length = 342
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)
Query: 2 GKLLEPVWGS-KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGF 60
G +E W S KE KFI ++ LT++ I + + + + + + L +PL G +L GF
Sbjct: 106 GSFIERNWNSSKEMFKFIIVLGSLTNVLIIMLTLLVSFFSN-KVRLDIPLDGNYTILIGF 164
Query: 61 LVGIKQIVPDQELYLLK--------IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGT 112
+ +Q++P+ + LK + K LP ++ A L ++
Sbjct: 165 PIIYRQLLPETTIIHLKTPQFLAKNFRFKLLPIFVMFTMTVTQIIWFHHFAQLFSIWVTF 224
Query: 113 YMGWIYLRYLQKK--------PETK-------LSGDPSDDFAFSSFFPEFIRPVIDPIAS 157
+ W YLR+ QK P T L GD SD F FFP+ I+P++ PI +
Sbjct: 225 FASWSYLRFFQKLAPLNCPSLPTTNSQGGQEILVGDASDTFQLIYFFPDLIKPILRPIFN 284
Query: 158 -IFHRMLCGRRTETSGDDHGYTLGG--ASLPGSDPIEA--SRRRERGARALEERLAT 209
I++ ++ + D +G A G+ I RRR+ + LEER+
Sbjct: 285 FIYNVVVVKFKVIKPFHDIDIDIGNTIAESRGAKKIMTVEERRRQLALQVLEERMVN 341
>sp|P47480|TIG_MYCGE Trigger factor OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=tig PE=1 SV=1
Length = 444
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 112 TYMGWIYLRYLQKKPET---------KLSGDPSDDFAFSSFFPEFIRPV--IDPIASIFH 160
T+ +++ LQ KP T KL P D+ F SF PE + + S FH
Sbjct: 225 TFPSDYHVKELQSKPVTFEVVLKAIKKLEFTPMDETNFKSFLPEQFQSFTSLKAFKSYFH 284
Query: 161 RMLCGRRTETSGDDHG-----YTLGGASLP----GSDPIEASR-RRERGARALEERLATE 210
+++ ++ ET ++ + L LP +EA+R + + ++A + ++ E
Sbjct: 285 KLMENKKQETILQENNQKIRQFLLTNTKLPFLPEALIKLEANRLLKLQQSQAEQYKIPFE 344
Query: 211 KLAAAQSV------EESKKDAAENV 229
KL +A ++ + + K+A ENV
Sbjct: 345 KLLSASNITLTELQDRNIKEAKENV 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,398,175
Number of Sequences: 539616
Number of extensions: 3258128
Number of successful extensions: 9118
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9102
Number of HSP's gapped (non-prelim): 15
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)