Query 026994
Match_columns 229
No_of_seqs 203 out of 1164
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.1 1E-09 3.5E-14 89.8 11.1 105 1-124 71-180 (181)
2 2nr9_A Protein GLPG homolog; i 98.9 2.1E-09 7.3E-14 89.0 5.4 108 1-125 76-186 (196)
3 1g70_B RSG-1.2 peptide; peptid 91.9 0.083 2.8E-06 28.2 1.7 18 186-203 6-23 (26)
4 2kxh_B Peptide of FAR upstream 50.6 8.4 0.00029 21.8 1.7 12 190-201 11-23 (31)
5 3c01_A Surface presentation of 37.4 29 0.001 21.6 2.9 23 188-210 16-38 (48)
6 4ffl_A PYLC; amino acid, biosy 37.4 16 0.00056 31.3 2.4 24 186-209 338-361 (363)
7 3bzy_A ESCU; auto cleavage pro 30.5 43 0.0015 21.4 2.9 23 188-210 22-44 (54)
8 3ha4_A MIX1; TPR-like, helix-t 25.2 24 0.00084 26.3 1.2 26 180-207 11-41 (154)
9 1q90_R Cytochrome B6-F complex 24.5 1.1E+02 0.0039 18.9 4.1 31 8-38 8-38 (49)
10 4aco_A Centromere DNA-binding 21.8 68 0.0023 31.7 3.8 25 108-134 281-305 (956)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.06 E-value=1e-09 Score=89.82 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=73.2
Q ss_pred ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH---HHhcCCeeEEee
Q 026994 1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIK---QIVPDQELYLLK 77 (229)
Q Consensus 1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~---ql~Pe~~v~l~~ 77 (229)
+|+.+|+.||+++|+.+|+++++.+++.+++ +.+. +..|+||+++|+++++. ...|+.++.
T Consensus 71 ~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~-------~~~~------~~vGaSGai~gl~g~~~~~~~~~p~~~~~--- 134 (181)
T 2xov_A 71 LGGAVEKRLGSGKLIVITLISALLSGYVQQK-------FSGP------WFGGLSGVVYALMGYVWLRGERDPQSGIY--- 134 (181)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------HHCS------CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-------hcCC------CceeHHHHHHHHHHHHHHHHhhCcCceee---
Confidence 4889999999999999999999999998743 1221 27799999999998764 467877652
Q ss_pred echhHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHhhc
Q 026994 78 IKAKWLPSLMLLLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYLQK 124 (229)
Q Consensus 78 ir~k~lp~~~l~~~~~~~~~~--~~~~~~~~~~l~G~l~gw~YlRf~q~ 124 (229)
++.+...+ +++.++.++.. ..+..+.+ |++|++.|+++...++|
T Consensus 135 l~~~~~~~--~~~~~~~~~~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 135 LQRGLIIF--ALIWIVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp CCHHHHHH--HHHHHHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHH--HHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHHhc
Confidence 22222211 11222333332 23566776 99999999999887765
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=98.85 E-value=2.1e-09 Score=89.00 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=68.8
Q ss_pred ChhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH---HhcCCeeEEee
Q 026994 1 MGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ---IVPDQELYLLK 77 (229)
Q Consensus 1 ~G~~lE~~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~g~lvA~~q---l~Pe~~v~l~~ 77 (229)
+|+.+|+.||+++|+.+|+++++++++.+++ +.++ ...|+||+++|+++++.. ..|+. + .++
T Consensus 76 ~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~-------~~~~------~~vGaSGai~gl~g~~~~~~~~~~~~-~-~~~ 140 (196)
T 2nr9_A 76 FGGMIERTFGSVKLLMLYVVASAITGYVQNY-------VSGP------AFFGLSGVVYAVLGYVFIRDKLNHHL-F-DLP 140 (196)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------HHCS------CCCCSHHHHHHHHHHHHHHHHSSTTS-C-CCC
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHHHHHHHH-------hcCC------CeeeHHHHHHHHHHHHHHHHHhcchh-h-cch
Confidence 4889999999999999999999999998743 2222 267999999999986543 23433 1 123
Q ss_pred echhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 026994 78 IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK 125 (229)
Q Consensus 78 ir~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~l~gw~YlRf~q~~ 125 (229)
.+...+..+++.+.+. ......++.+.+ |++|++.|+++...+.++
T Consensus 141 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 141 EGFFTMLLVGIALGFI-SPLFGVEMGNAA-HISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp CSSTTTTTTTTTHHHH-SCSSCCTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhccCCCccHHH-HHHHHHHHHHHHHHHHhc
Confidence 3332222222222221 110123556665 888888888877666554
No 3
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=91.89 E-value=0.083 Score=28.18 Aligned_cols=18 Identities=56% Similarity=0.733 Sum_probs=13.8
Q ss_pred CCCchhhhHHHHHHHHHH
Q 026994 186 GSDPIEASRRRERGARAL 203 (229)
Q Consensus 186 g~~~~eaeRRR~~AlkaL 203 (229)
|+.|.-|||||..|..|.
T Consensus 6 gsrpsgaerrrrraaaa~ 23 (26)
T 1g70_B 6 GSRPSGAERRRRRAAAAX 23 (26)
T ss_pred CCCCchHHHHHHHHHhhh
Confidence 566778999998887654
No 4
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=50.56 E-value=8.4 Score=21.76 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=9.6
Q ss_pred hhh-hHHHHHHHH
Q 026994 190 IEA-SRRRERGAR 201 (229)
Q Consensus 190 ~ea-eRRR~~Alk 201 (229)
+|| +|=||||.|
T Consensus 11 adA~~RaRQIaAK 23 (31)
T 2kxh_B 11 KDALQRARQIAAK 23 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 444 899999987
No 5
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=37.41 E-value=29 Score=21.64 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhcc
Q 026994 188 DPIEASRRRERGARALEERLATE 210 (229)
Q Consensus 188 ~~~eaeRRR~~AlkaL~eRl~~~ 210 (229)
||+--.|||+++-+....|+.++
T Consensus 16 dP~iK~~~R~~~~e~a~~~m~~~ 38 (48)
T 3c01_A 16 NPEVKSKRREVHMEILSEQVKSD 38 (48)
T ss_pred CHHHHHHHHHHHHHHHHhHHHhc
Confidence 78888999999999999999743
No 6
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=37.36 E-value=16 Score=31.29 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.9
Q ss_pred CCCchhhhHHHHHHHHHHHHHHhc
Q 026994 186 GSDPIEASRRRERGARALEERLAT 209 (229)
Q Consensus 186 g~~~~eaeRRR~~AlkaL~eRl~~ 209 (229)
|.|++||.+|.+.||+.+++|+.+
T Consensus 338 G~~~~eA~~k~~~al~~i~~~~g~ 361 (363)
T 4ffl_A 338 GKDREETGAKRCKGLSVLKERFGA 361 (363)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHCC
T ss_pred ECCHHHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999863
No 7
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=30.48 E-value=43 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhcc
Q 026994 188 DPIEASRRRERGARALEERLATE 210 (229)
Q Consensus 188 ~~~eaeRRR~~AlkaL~eRl~~~ 210 (229)
||+--.|||+++-+....|+.++
T Consensus 22 dP~iK~r~R~~~re~a~~~m~~~ 44 (54)
T 3bzy_A 22 NPEIKGERRRLHSEIQSGSLANN 44 (54)
T ss_pred CHHHHHHHHHHHHHHHHhHHHhc
Confidence 78888999999999999998643
No 8
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=25.24 E-value=24 Score=26.33 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=13.4
Q ss_pred cCCCCCCCCchhhhHHHHHH-----HHHHHHHH
Q 026994 180 GGASLPGSDPIEASRRRERG-----ARALEERL 207 (229)
Q Consensus 180 ~~~~lpg~~~~eaeRRR~~A-----lkaL~eRl 207 (229)
+...+| +.-||||||.-- --.|.||.
T Consensus 11 gp~~lp--deleae~rrrndprrppwpllhqr~ 41 (154)
T 3ha4_A 11 GPIELP--EELEAQRQRHNDPRRPPWPLLHQRV 41 (154)
T ss_dssp --------CCHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred CCccCc--HHHHHHHHhhCCCCCCCchhhhhhh
Confidence 446777 788999988642 23466664
No 9
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=24.50 E-value=1.1e+02 Score=18.92 Aligned_cols=31 Identities=3% Similarity=0.131 Sum_probs=18.3
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026994 8 VWGSKEFLKFIFIVNFLTSLCIFITAVALYY 38 (229)
Q Consensus 8 ~wGs~efl~f~lv~gi~~~l~~~~~~~~~y~ 38 (229)
-++.|+|+.+.++..+.......+..++.|+
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 3678999999987444443333444444443
No 10
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=21.84 E-value=68 Score=31.73 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccCCC
Q 026994 108 LIFGTYMGWIYLRYLQKKPETKLSGDP 134 (229)
Q Consensus 108 ~l~G~l~gw~YlRf~q~~~~~~~rGD~ 134 (229)
+-.+-+..|+|||||--. +..|||.
T Consensus 281 CPi~tLA~YlfLRFygvk--~vykGdG 305 (956)
T 4aco_A 281 CPQTTLAAYLYLRFYGIP--SVSKGDG 305 (956)
T ss_dssp CHHHHHHHHHHHHHHCBT--TTBCCCC
T ss_pred cchHHHHHHHHHHHhccc--ccccCCC
Confidence 567889999999999754 4578885
Done!